Query 027307
Match_columns 225
No_of_seqs 129 out of 319
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 13:01:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027307.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027307hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uklc_ a.38.1.1 (C:) SREBP-2 64.1 4.1 0.0003 26.3 4.1 28 117-144 31-58 (61)
2 d1hcia4 a.7.1.1 (A:633-746) al 58.4 7.1 0.00052 26.6 4.8 54 97-150 15-68 (114)
3 d1nkpa_ a.38.1.1 (A:) Myc prot 50.6 20 0.0015 24.0 6.1 31 118-148 51-81 (88)
4 d1am9a_ a.38.1.1 (A:) SREBP-1a 49.6 12 0.00091 24.9 4.7 30 117-146 48-77 (80)
5 d1nkpb_ a.38.1.1 (B:) Max prot 32.7 33 0.0024 22.6 4.7 32 117-148 45-76 (83)
6 d1urfa_ a.2.6.1 (A:) Protein k 32.4 59 0.0043 22.2 6.1 21 77-97 24-44 (81)
7 d1nlwa_ a.38.1.1 (A:) Mad prot 27.4 50 0.0037 21.4 4.9 30 118-147 46-75 (79)
8 d1fxkc_ a.2.5.1 (C:) Prefoldin 26.0 46 0.0033 23.2 4.8 32 119-150 8-39 (133)
9 d3coqa1 g.38.1.1 (A:8-48) Gal4 24.4 17 0.0013 21.4 1.8 16 41-56 2-17 (41)
10 d1slqa_ f.47.1.1 (A:) VP4 memb 22.4 27 0.002 29.2 3.2 35 111-145 229-263 (270)
11 d1pyia1 g.38.1.1 (A:30-71) PPR 21.9 23 0.0017 21.1 2.0 17 40-56 2-18 (42)
12 d1zmec1 g.38.1.1 (C:31-66) PUT 20.2 25 0.0018 20.5 1.8 15 41-55 2-16 (36)
No 1
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=64.11 E-value=4.1 Score=26.34 Aligned_cols=28 Identities=29% Similarity=0.172 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027307 117 CMGAISTLQQQVQCLQAELNVVRNEIIK 144 (225)
Q Consensus 117 CvG~I~~Lq~QI~~lqaEL~~vr~eL~~ 144 (225)
++-.|..||+|+..+++|+..++.+...
T Consensus 31 Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~ 58 (61)
T d1uklc_ 31 AIDYIKYLQQVNHKLRQENMVLKLANQK 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478999999999999999999887754
No 2
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.43 E-value=7.1 Score=26.65 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 027307 97 DAANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREA 150 (225)
Q Consensus 97 dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~~A 150 (225)
+-+.+-+-|+..-+.+|++|-.+.|..+..+.+.++++|...+..|........
T Consensus 15 ~~~~~Wi~e~~~~l~~~~~~~~~~ve~~l~~h~~~e~el~~~~~~i~~l~~~g~ 68 (114)
T d1hcia4 15 NAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQ 68 (114)
T ss_dssp HHHHHHHHHHHHHHHSCSCTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666778888888999999999999999999999999999999888765544
No 3
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.63 E-value=20 Score=24.01 Aligned_cols=31 Identities=23% Similarity=0.226 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027307 118 MGAISTLQQQVQCLQAELNVVRNEIIKYKYR 148 (225)
Q Consensus 118 vG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~ 148 (225)
+-.|..|+.++..++.+++.++.+....+.+
T Consensus 51 ~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~ 81 (88)
T d1nkpa_ 51 TAYILSVQAEEQKLISEEDLLRKRREQLKHK 81 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5568889999988888888888777665543
No 4
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.62 E-value=12 Score=24.87 Aligned_cols=30 Identities=30% Similarity=0.253 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027307 117 CMGAISTLQQQVQCLQAELNVVRNEIIKYK 146 (225)
Q Consensus 117 CvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~ 146 (225)
.+-.|..|+.+++.|++++..++.++...+
T Consensus 48 a~~yI~~L~~~~~~L~~e~~~lk~~~~~~~ 77 (80)
T d1am9a_ 48 AIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 466899999999999999999998887654
No 5
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.68 E-value=33 Score=22.62 Aligned_cols=32 Identities=6% Similarity=0.129 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027307 117 CMGAISTLQQQVQCLQAELNVVRNEIIKYKYR 148 (225)
Q Consensus 117 CvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~ 148 (225)
.+-.|..|+++++.++.++..++.+....+.+
T Consensus 45 A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~ 76 (83)
T d1nkpb_ 45 ATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44568889999999988888888777665543
No 6
>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.36 E-value=59 Score=22.19 Aligned_cols=21 Identities=19% Similarity=0.174 Sum_probs=15.9
Q ss_pred hhcchhHHHHHhcCCCcchHH
Q 027307 77 VFGASNVSKMLNDVPESQRAD 97 (225)
Q Consensus 77 vFG~SNV~kmL~~lp~~~R~d 97 (225)
.=|+.||++++..-...+|..
T Consensus 24 keGaEnm~k~~~~~~~~DrK~ 44 (81)
T d1urfa_ 24 KQGAENMIQTYSNGSTKDRKL 44 (81)
T ss_dssp HHHHHHHHHHHHHSSSCCHHH
T ss_pred HHHHHHHHHHHccCCcccHHH
Confidence 459999999999876556543
No 7
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.43 E-value=50 Score=21.40 Aligned_cols=30 Identities=13% Similarity=0.078 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027307 118 MGAISTLQQQVQCLQAELNVVRNEIIKYKY 147 (225)
Q Consensus 118 vG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~ 147 (225)
+-.|..|+.++..+..++..++.+....+.
T Consensus 46 ~~yI~~L~~~~~~l~~~~~~L~~~~~~L~~ 75 (79)
T d1nlwa_ 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKR 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 668899999999998888888877765543
No 8
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=26.02 E-value=46 Score=23.21 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 027307 119 GAISTLQQQVQCLQAELNVVRNEIIKYKYREA 150 (225)
Q Consensus 119 G~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~~A 150 (225)
+.+..|+++++.+++++..++..+..|.....
T Consensus 8 ~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~ 39 (133)
T d1fxkc_ 8 AQLNIYQSQVELIQQQMEAVRATISELEILEK 39 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777777777665443
No 9
>d3coqa1 g.38.1.1 (A:8-48) Gal4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.38 E-value=17 Score=21.41 Aligned_cols=16 Identities=31% Similarity=0.993 Sum_probs=12.9
Q ss_pred CCChhhhhhhcCCCCC
Q 027307 41 TPCAACKLLRRRCAQE 56 (225)
Q Consensus 41 ~~CAACK~lRRrC~~~ 56 (225)
++|..|+..+.||...
T Consensus 2 ~AC~~Cr~rK~KCd~~ 17 (41)
T d3coqa1 2 QACDICRLKKLKCSKE 17 (41)
T ss_dssp CCCHHHHHHTCCCCCC
T ss_pred cchHHHHHhCcccCCc
Confidence 5889999999999653
No 10
>d1slqa_ f.47.1.1 (A:) VP4 membrane interaction domain {Rhesus rotavirus [TaxId: 10969]}
Probab=22.43 E-value=27 Score=29.19 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=28.9
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027307 111 RDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKY 145 (225)
Q Consensus 111 rDPVyGCvG~I~~Lq~QI~~lqaEL~~vr~eL~~~ 145 (225)
+-|+--.+-+=+.|++||.+|++|.+.+-+|++.-
T Consensus 229 qTpi~Ns~TVrqDLErqi~dLr~efN~ls~eiais 263 (270)
T d1slqa_ 229 QTPITNSVTVRQDLERQLGELREEFNALSQEIAMS 263 (270)
T ss_dssp CCCCBCCEECCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCCccCceeehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34565666677899999999999999999998765
No 11
>d1pyia1 g.38.1.1 (A:30-71) PPR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.94 E-value=23 Score=21.08 Aligned_cols=17 Identities=41% Similarity=0.931 Sum_probs=13.7
Q ss_pred CCCChhhhhhhcCCCCC
Q 027307 40 ITPCAACKLLRRRCAQE 56 (225)
Q Consensus 40 ~~~CAACK~lRRrC~~~ 56 (225)
..+|..|+..+.||...
T Consensus 2 r~aC~~Cr~rK~kCd~~ 18 (42)
T d1pyia1 2 RTACKRCRLKKIKCDQE 18 (42)
T ss_dssp CCCCHHHHHHTCCCCCC
T ss_pred cHHHHHHHHhCcCCCCc
Confidence 46899999999999754
No 12
>d1zmec1 g.38.1.1 (C:31-66) PUT3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.16 E-value=25 Score=20.53 Aligned_cols=15 Identities=20% Similarity=0.740 Sum_probs=10.1
Q ss_pred CCChhhhhhhcCCCC
Q 027307 41 TPCAACKLLRRRCAQ 55 (225)
Q Consensus 41 ~~CAACK~lRRrC~~ 55 (225)
.+|-.||..+.||..
T Consensus 2 ~aC~~Cr~rK~kCd~ 16 (36)
T d1zmec1 2 VACLSCRKRHIKCPG 16 (36)
T ss_dssp CCCHHHHHHTCCCCC
T ss_pred ccHHHHHHhCCcCCC
Confidence 467777777777753
Done!