BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027308
         (225 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1L3A|A Chain A, Structure Of The Plant Transcriptional Regulator Pbf-2
 pdb|1L3A|B Chain B, Structure Of The Plant Transcriptional Regulator Pbf-2
 pdb|1L3A|C Chain C, Structure Of The Plant Transcriptional Regulator Pbf-2
 pdb|1L3A|D Chain D, Structure Of The Plant Transcriptional Regulator Pbf-2
          Length = 227

 Score =  212 bits (539), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 99/121 (81%), Positives = 110/121 (90%)

Query: 79  GTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDW 138
           G    +V+VG+SIYKGKAALTVEPR PEF  LDSGA KLSREG VMLQFAPAAGVRQYDW
Sbjct: 32  GASTPKVFVGYSIYKGKAALTVEPRSPEFSPLDSGAFKLSREGMVMLQFAPAAGVRQYDW 91

Query: 139 SRKQVFSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNL 198
           SRKQVFSLSVTEIGS+++LG ++SCEFFHDP KG+S+EG+VRKVLKVEPLPDGSGHFFNL
Sbjct: 92  SRKQVFSLSVTEIGSIISLGTKDSCEFFHDPNKGRSDEGRVRKVLKVEPLPDGSGHFFNL 151

Query: 199 S 199
           S
Sbjct: 152 S 152


>pdb|3N1H|A Chain A, Crystal Structure Of Stwhy2
 pdb|3N1I|A Chain A, Crystal Structure Of A Stwhy2-Ere32 Complex
 pdb|3N1J|A Chain A, Crystal Structure Of A Stwhy2-Dt32 Complex
 pdb|3N1K|A Chain A, Crystal Structure Of A Stwhy2-Cere32 Complex
 pdb|3N1L|A Chain A, Crystal Structure Of A Stwhy2-Rcere32 Complex
          Length = 178

 Score =  143 bits (361), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 64/116 (55%), Positives = 87/116 (75%)

Query: 84  RVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQV 143
           RV+  +S++KGKAAL+ EPR P F  LDSG VKL+R G +ML F P+ G R+YDW ++Q+
Sbjct: 10  RVFAPYSVFKGKAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQL 69

Query: 144 FSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLS 199
           F+LS TE+GSL+++G R+S EFFHDP    S  G+VRK L ++P  DGSG+F +LS
Sbjct: 70  FALSATEVGSLISMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLS 125


>pdb|3R9Y|A Chain A, Crystal Structure Of Stwhy2 K67a (Form I)
 pdb|3R9Z|A Chain A, Crystal Structure Of Stwhy2 K67a (Form Ii)
 pdb|3RA0|A Chain A, Crystal Structure Of A Stwhy2 K67a-Dt32 Complex
          Length = 178

 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 63/116 (54%), Positives = 86/116 (74%)

Query: 84  RVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQV 143
           RV+  +S++KG AAL+ EPR P F  LDSG VKL+R G +ML F P+ G R+YDW ++Q+
Sbjct: 10  RVFAPYSVFKGAAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQL 69

Query: 144 FSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLS 199
           F+LS TE+GSL+++G R+S EFFHDP    S  G+VRK L ++P  DGSG+F +LS
Sbjct: 70  FALSATEVGSLISMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLS 125


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.135    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,254,696
Number of Sequences: 62578
Number of extensions: 234985
Number of successful extensions: 407
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 404
Number of HSP's gapped (non-prelim): 4
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)