Query 027308
Match_columns 225
No_of_seqs 51 out of 53
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 13:02:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027308.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027308hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3a_A PBF-2, P24: plant trans 100.0 9.4E-68 3.2E-72 460.0 16.1 167 48-221 8-180 (227)
2 3r9z_A WHY2 protein; stwhy2, s 100.0 1.6E-64 5.3E-69 427.2 14.0 145 77-221 3-153 (178)
3 1aoc_A Coagulogen; coagulation 71.2 2.6 8.8E-05 35.3 2.9 52 85-143 77-128 (175)
4 1vq8_1 50S ribosomal protein L 29.5 16 0.00055 26.0 0.8 13 129-141 42-54 (57)
5 3j21_e 50S ribosomal protein L 22.9 25 0.00086 25.4 0.8 14 129-142 42-55 (62)
6 3iz5_l 60S ribosomal protein L 17.4 39 0.0013 26.1 0.9 14 129-142 40-53 (94)
7 3qwn_A Hypothetical NIGD-like 15.6 3.2E+02 0.011 23.0 6.2 76 120-202 109-189 (214)
8 2zkr_2 60S ribosomal protein L 14.3 57 0.002 25.3 1.1 14 129-142 40-53 (97)
9 2cwp_A Metrs related protein; 13.1 1.7E+02 0.0058 22.1 3.4 24 178-202 18-41 (112)
10 3ers_X TRNA-binding protein YG 12.3 1.6E+02 0.0054 22.7 3.1 24 178-202 15-38 (118)
No 1
>1l3a_A PBF-2, P24: plant transcriptional regulator PBF-2; single strand DNA binding protein, whirly, transcriptionnal activator, cyclic C4 symmetry; 2.30A {Solanum tuberosum} SCOP: d.18.1.2
Probab=100.00 E-value=9.4e-68 Score=460.02 Aligned_cols=167 Identities=63% Similarity=0.994 Sum_probs=136.9
Q ss_pred EEeeccccccccCCCCCCCCCCCCCCCCccCCCCCCeeeeeeeeeeCceeEEEeecCCceeecCCcceEEeeeceEEEEe
Q 027308 48 YVKCRQSEYYEQKSFSASPSNSSYAPTDVAVGTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQF 127 (225)
Q Consensus 48 ~~~~~~s~~f~~~~~~~~~~~~~~~~~~~~~~~~~~RVy~~ysIYKgKAAlsv~p~~P~F~~l~SG~~kv~R~G~vlLeF 127 (225)
..+||||||||+|++++++.+ + +++.+++|||++|+||||||||+|+|++|+|+.++||+++++|+|+|||||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~----~---~a~~~~~Rvf~~ysVYkgkAALsv~pi~PtF~~l~sG~~kv~R~G~ILLEF 80 (227)
T 1l3a_A 8 QQMGRGSDYFEPQQQQQQQQQ----Q---PQGASTPKVFVGYSIYKGKAALTVEPRSPEFSPLDSGAFKLSREGMVMLQF 80 (227)
T ss_dssp ----------------------------------CCCEECCEEEECSSEEEEEEEECCEEEECSTTEEEEEECCEEEEEE
T ss_pred ccccchhhhccccCCCCCccC----C---CCCCCCCeeecceeEEccceEEEEEecCCcceEcCCCcEEEeeCCEEEEEE
Confidence 468999999999998654321 1 158889999999999999999999999999999999999999999999999
Q ss_pred eccccCccccCCcceEEEEehhhhhhhhhccCccceeEeecCCCCCCCCCceeEEEEEEECCCCCcceEEEEeccccce-
Q 027308 128 APAAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSNALFLEL- 206 (225)
Q Consensus 128 APA~G~RqYDW~kKq~FsLS~tEvG~LlsLga~~sceFFHDP~mg~S~eGkvrK~LkVeP~pDGsG~ffnLsV~n~~~~- 206 (225)
||++|+|||||+|||+|+||++|||+||+|+++++|||||||+||+|++|+|+|+|||||+|||+|+||||+|+|++++
T Consensus 81 APa~g~RqYDW~kKq~FsLS~tEvG~LLsl~~~~s~effHdP~~g~s~~g~v~K~LkIep~pdGsG~f~nLSV~nk~~~~ 160 (227)
T 1l3a_A 81 APAAGVRQYDWSRKQVFSLSVTEIGSIISLGTKDSCEFFHDPNKGRSDEGRVRKVLKVEPLPDGSGHFFNLSVQNKLINL 160 (227)
T ss_dssp EEBCSTTCBCGGGCEEEEECHHHHHHHHTCCTTCCEEEEECSCCSSSCCCCCEEEEEEEECTTSSEEEEEEEEEEGGGTE
T ss_pred eeccCccccccccceEEEeCHHHHhHHHhcccccceEEEecCCcCCcccccceeEEEEeecCCCcccEEEEEeeecccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred -----eeeccccchhhhhhh
Q 027308 207 -----LAVNLEDYLLFDDKI 221 (225)
Q Consensus 207 -----~~ln~~e~~vf~~~~ 221 (225)
|.|+.+|++|+|+++
T Consensus 161 de~~~VpVs~gEfaV~rsl~ 180 (227)
T 1l3a_A 161 DENIYIPVTKAEFAVLVSAF 180 (227)
T ss_dssp EEEEEEEEEHHHHHHHHHHH
T ss_pred cceEEEechHHHHHHHHHHH
Confidence 788899999999975
No 2
>3r9z_A WHY2 protein; stwhy2, single-stranded DNA binding protein, plant, potato, mitochondria, DNA binding protein; 1.75A {Solanum tuberosum} SCOP: d.18.1.0 PDB: 3r9y_A 3ra0_A* 3n1h_A 3n1i_A* 3n1j_A* 3n1k_A* 3n1l_A*
Probab=100.00 E-value=1.6e-64 Score=427.23 Aligned_cols=145 Identities=45% Similarity=0.765 Sum_probs=129.8
Q ss_pred cCCCCCCeeeeeeeeeeCceeEEEeecCCceeecCCcceEEeeeceEEEEeeccccCccccCCcceEEEEehhhhhhhhh
Q 027308 77 AVGTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVA 156 (225)
Q Consensus 77 ~~~~~~~RVy~~ysIYKgKAAlsv~p~~P~F~~l~SG~~kv~R~G~vlLeFAPA~G~RqYDW~kKq~FsLS~tEvG~Lls 156 (225)
++|.+++|||++|+||||||||+|+|++|+|+.++||+++++|+|+||||||||+|+|||||+|||+|+|||+|||+||+
T Consensus 3 ~~~~~~~rvy~~~sVYkgkAAl~v~pi~Ptf~~~~sg~~~v~R~G~ilLefapa~g~rqYDW~kK~~FsLS~tEvG~Lls 82 (178)
T 3r9z_A 3 DAGKREGRVFAPYSVFKGAAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSLIS 82 (178)
T ss_dssp ----CTTCCCCCEEEECSSEEEEEEEECCCEEECTTSSEEECSCCEEEEEEEEEEETTEECGGGCEEEEECHHHHHHHHT
T ss_pred CCCCCCCccccCeeEECCceEEEEEecCCcceEcCCCCEEEeeCCEEEEEEeecccccccccccCeEEEeCHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccceeEeecCCCCCCCCCceeEEEEEEECCCCCcceEEEEeccccce------eeeccccchhhhhhh
Q 027308 157 LGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSNALFLEL------LAVNLEDYLLFDDKI 221 (225)
Q Consensus 157 Lga~~sceFFHDP~mg~S~eGkvrK~LkVeP~pDGsG~ffnLsV~n~~~~------~~ln~~e~~vf~~~~ 221 (225)
++++++|||||||+||+|++|+|+|+|||||++||+|+||||+|+|++++ |.|+.+|++|+++++
T Consensus 83 l~~~~s~effHDP~~g~s~~g~v~K~Lkiep~~dgsG~f~~Lsv~n~~~~~~~~~~vpvt~gEfav~~~~~ 153 (178)
T 3r9z_A 83 MGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNNNLKTNDRFTVPVTTAEFAVMRTAF 153 (178)
T ss_dssp CCTTCCEEEEECC--------CEEEEEEEEECTTSSEEEEEEEEEETTTTEEEEEEEEEEHHHHHHHHHHH
T ss_pred hcccCcceeEeCcccCCCccCCceeEEEEEECCCCcceEEEEEEecccccccccEEEEecHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999653 889999999999975
No 3
>1aoc_A Coagulogen; coagulation factor, clottable protein, cystine knot superfamily; 2.00A {Tachypleus tridentatus} SCOP: g.17.1.5
Probab=71.23 E-value=2.6 Score=35.28 Aligned_cols=52 Identities=23% Similarity=0.386 Sum_probs=44.0
Q ss_pred eeeeeeeeeCceeEEEeecCCceeecCCcceEEeeeceEEEEeeccccCccccCCcceE
Q 027308 85 VYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQV 143 (225)
Q Consensus 85 Vy~~ysIYKgKAAlsv~p~~P~F~~l~SG~~kv~R~G~vlLeFAPA~G~RqYDW~kKq~ 143 (225)
-|++|.-||+..-.+.+..-|.|.-.-+|.+++ +--||.+|-||--|+.|--
T Consensus 77 nf~pf~hf~secpvstrdcepvfgyt~a~efrv-------ivqapragfrqcvwqhkcr 128 (175)
T 1aoc_A 77 NFPPFTHFKSECPVSTRDCEPVFGYTVAGEFRV-------IVQAPRAGFRQCVWQHKCR 128 (175)
T ss_dssp GSTTCCCCSSBCCEEEECCCCSEEEBTTCCEEE-------ECCBTTTTBCBCCCEEEET
T ss_pred cCCCcccccccCCcccccccccccceecceEEE-------EEeCchhhhHHHHHhhhcc
Confidence 366788899999999999999999988987643 3358999999999999853
No 4
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=29.52 E-value=16 Score=26.03 Aligned_cols=13 Identities=38% Similarity=0.854 Sum_probs=10.8
Q ss_pred ccccCccccCCcc
Q 027308 129 PAAGVRQYDWSRK 141 (225)
Q Consensus 129 PA~G~RqYDW~kK 141 (225)
|+.--|+|+|+.|
T Consensus 42 pa~r~R~ynWs~K 54 (57)
T 1vq8_1 42 KSAKRRDYEWQSK 54 (57)
T ss_dssp TCSSCCCCGGGSC
T ss_pred chhhhcCcchhhh
Confidence 6666799999987
No 5
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.95 E-value=25 Score=25.39 Aligned_cols=14 Identities=36% Similarity=0.802 Sum_probs=10.5
Q ss_pred ccccCccccCCcce
Q 027308 129 PAAGVRQYDWSRKQ 142 (225)
Q Consensus 129 PA~G~RqYDW~kKq 142 (225)
|+.--|+|+|+.|-
T Consensus 42 ps~r~R~YnWs~Ka 55 (62)
T 3j21_e 42 RSRRLRKYRWSKKW 55 (62)
T ss_dssp TCSSCCCCTTCSHH
T ss_pred hhhhhccccHHHHh
Confidence 55556899999873
No 6
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=17.42 E-value=39 Score=26.15 Aligned_cols=14 Identities=57% Similarity=1.144 Sum_probs=11.1
Q ss_pred ccccCccccCCcce
Q 027308 129 PAAGVRQYDWSRKQ 142 (225)
Q Consensus 129 PA~G~RqYDW~kKq 142 (225)
|+.--|+|+|+.|-
T Consensus 40 ps~r~R~YnWs~Ka 53 (94)
T 3iz5_l 40 PAARIRKYNWSVKA 53 (94)
T ss_dssp SCSSCCCCSSSCHH
T ss_pred chhhcccccHHHhh
Confidence 66667999999873
No 7
>3qwn_A Hypothetical NIGD-like protein; SH3-like barrel fold, structural genomics, joint center for structural genomics, JCSG; 2.42A {Bacteroides caccae}
Probab=15.65 E-value=3.2e+02 Score=23.03 Aligned_cols=76 Identities=8% Similarity=0.159 Sum_probs=44.3
Q ss_pred eceEEEEeeccccCccccCCcceEEEEehhhhhhhhhccCccceeEeecCCCCCC-CCCceeEEEEEEECCCCC----cc
Q 027308 120 EGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCEFFHDPFKGKS-EEGKVRKVLKVEPLPDGS----GH 194 (225)
Q Consensus 120 ~G~vlLeFAPA~G~RqYDW~kKq~FsLS~tEvG~LlsLga~~sceFFHDP~mg~S-~eGkvrK~LkVeP~pDGs----G~ 194 (225)
.|.|=|+|.--.+ + .+|+.|.|=..++ .. +-+..--+||+|+-+--.. -.+...=++.+..++|-. |-
T Consensus 109 ~~YLNl~f~~k~~----~-~~kH~i~lV~~~~-~~-~~~~~~~LeLrHna~gD~~~y~~~gyvSfpL~~l~~~~~~~~~~ 181 (214)
T 3qwn_A 109 RGYLNMILNLKVN----G-GKQHVFGIVEDLS-EF-ETNGTVNMLLYHDANGDEEYYNRRAYLSVPLDKYADAENPGQKI 181 (214)
T ss_dssp TTEEEEEEEEEEC----S-SSCCEEEEEEECT-TH-HHHCEEEEEEEEECTTCCSCEEEEEEEEEECGGGCCTTSTTCCE
T ss_pred CCEEEEEEEEccC----C-CccEEEEEEeccc-cc-CCCcEEEEEEEECCCCCCccceecEEEEEEhHHCccccccCCCc
Confidence 5677777765443 2 6799999988877 11 1122238999999765321 123444456666665432 22
Q ss_pred eEEEEecc
Q 027308 195 FFNLSNAL 202 (225)
Q Consensus 195 ffnLsV~n 202 (225)
=+.|+|+.
T Consensus 182 ~i~l~~nT 189 (214)
T 3qwn_A 182 TIKFKYYT 189 (214)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEEc
Confidence 35666543
No 8
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=14.33 E-value=57 Score=25.27 Aligned_cols=14 Identities=50% Similarity=0.997 Sum_probs=10.9
Q ss_pred ccccCccccCCcce
Q 027308 129 PAAGVRQYDWSRKQ 142 (225)
Q Consensus 129 PA~G~RqYDW~kKq 142 (225)
|+.--|.|+|+.|-
T Consensus 40 pa~k~R~ynWs~Ka 53 (97)
T 2zkr_2 40 PAKRKRKYNWSAKA 53 (97)
T ss_dssp TTSSCCCCSSSSCC
T ss_pred chHhccCcchhhhh
Confidence 45557999999983
No 9
>2cwp_A Metrs related protein; structural GEN riken structural genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus horikoshii}
Probab=13.13 E-value=1.7e+02 Score=22.15 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=17.3
Q ss_pred ceeEEEEEEECCCCCcceEEEEecc
Q 027308 178 KVRKVLKVEPLPDGSGHFFNLSNAL 202 (225)
Q Consensus 178 kvrK~LkVeP~pDGsG~ffnLsV~n 202 (225)
.|-|++++||+|+.. .+.-++|.-
T Consensus 18 rVG~I~~~e~hp~ad-kL~~~~VD~ 41 (112)
T 2cwp_A 18 KVGLVKKAEKIKRTK-KLIKLIVDF 41 (112)
T ss_dssp EEEEEEEEEECTTCS-SCEEEEEEC
T ss_pred EEEEEEEEEECCCCC-ccEEEEEEe
Confidence 477999999999875 455555543
No 10
>3ers_X TRNA-binding protein YGJH; oligonucleotide-oligosaccharide binding fold; 1.87A {Escherichia coli}
Probab=12.31 E-value=1.6e+02 Score=22.65 Aligned_cols=24 Identities=13% Similarity=0.350 Sum_probs=17.2
Q ss_pred ceeEEEEEEECCCCCcceEEEEecc
Q 027308 178 KVRKVLKVEPLPDGSGHFFNLSNAL 202 (225)
Q Consensus 178 kvrK~LkVeP~pDGsG~ffnLsV~n 202 (225)
.|-|++++|++|+.. .+.-++|.-
T Consensus 15 rVG~I~~~e~hp~Ad-KL~~~~VD~ 38 (118)
T 3ers_X 15 RVGKIVEVKRHENAD-KLYIVQVDV 38 (118)
T ss_dssp EEEEEEEEECCTTCS-SCEEEEEEC
T ss_pred EEEEEEEEEEcCCCC-CcEEEEEEc
Confidence 578999999999875 344455543
Done!