BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027309
(225 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SZN7|HIP26_ARATH Heavy metal-associated isoprenylated plant protein 26
OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
Length = 153
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 1 MHCEACARKVARALKGFEGVDDITADSKASKVVVKGKTADPIKVCERLQKKSGRKVELIS 60
M CE C RKV R+++G +GV +T + KA KV V G DP KV R+ ++G+KVEL
Sbjct: 34 MDCEGCERKVRRSVEGMKGVSSVTLEPKAHKVTVVG-YVDPNKVVARMSHRTGKKVELWP 92
Query: 61 PLP 63
+P
Sbjct: 93 YVP 95
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 92 TVVLNVRMHCEACAQGLRKRIRKIQGVECVETNLASGQVIVKGVVDPVKLVNDVNKKTRK 151
TV + V+M CE C + +R+ + ++GV V + +V V G VDP K+V ++ +T K
Sbjct: 27 TVEIKVKMDCEGCERKVRRSVEGMKGVSSVTLEPKAHKVTVVGYVDPNKVVARMSHRTGK 86
Query: 152 QASIV----KDEEKKQEEKKEGEKKD-GGEEAKVDEEKNKQQLDFNINRSEYWATKNYSE 206
+ + D +KK G +VD+ Q A + +E
Sbjct: 87 KVELWPYVPYDVVAHPYAAGVYDKKAPSGYVRRVDDPGVSQ-----------LARASSTE 135
Query: 207 FAYAPQIFSDENPNACFVM 225
Y FSDENP AC VM
Sbjct: 136 VRYT-TAFSDENPAACVVM 153
>sp|Q8XD24|COPA_ECO57 Copper-exporting P-type ATPase A OS=Escherichia coli O157:H7
GN=copA PE=3 SV=3
Length = 834
Score = 41.6 bits (96), Expect = 0.005, Method: Composition-based stats.
Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 15/174 (8%)
Query: 1 MHCEACARKVARALKGFEGVDDITADSKASKVVVKGKTADPIKVCERLQKKSGRKVELIS 60
+ C C ++V +L+ V+ AD ++ V G TA ++ E + K++G +
Sbjct: 12 LSCGHCVKRVKESLEQRPDVEQ--ADVSITEAHVTG-TASAEQLIETI-KQAGYDASVSH 67
Query: 61 PLPKPPPPDADDQEKKEQQKVEKKEEPPAAIT------VVLNVRMHCEACAQGLRKRIRK 114
P KP + E E PAA +L M C +C ++ ++
Sbjct: 68 PKAKPLAESSIPSEAL----TAVSEALPAATADDDDSQQLLLSGMSCASCVTRVQNALQS 123
Query: 115 IQGVECVETNLASGQVIVKGVVDPVKLVNDVNKKTRKQASIVKDEEKKQEEKKE 168
+ GV NLA +V G P LV V +K A ++D+ K++E ++E
Sbjct: 124 VPGVTQARVNLAERTALVMGSASPQDLVQAV-EKAGYGAEAIEDDAKRRERQQE 176
>sp|Q59385|COPA_ECOLI Copper-exporting P-type ATPase A OS=Escherichia coli (strain K12)
GN=copA PE=1 SV=4
Length = 834
Score = 41.6 bits (96), Expect = 0.005, Method: Composition-based stats.
Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 15/174 (8%)
Query: 1 MHCEACARKVARALKGFEGVDDITADSKASKVVVKGKTADPIKVCERLQKKSGRKVELIS 60
+ C C ++V +L+ V+ AD ++ V G TA ++ E + K++G +
Sbjct: 12 LSCGHCVKRVKESLEQRPDVEQ--ADVSITEAHVTG-TASAEQLIETI-KQAGYDASVSH 67
Query: 61 PLPKPPPPDADDQEKKEQQKVEKKEEPPAAIT------VVLNVRMHCEACAQGLRKRIRK 114
P KP + E E PAA +L M C +C ++ ++
Sbjct: 68 PKAKPLAESSIPSEAL----TAVSEALPAATADDDDSQQLLLSGMSCASCVTRVQNALQS 123
Query: 115 IQGVECVETNLASGQVIVKGVVDPVKLVNDVNKKTRKQASIVKDEEKKQEEKKE 168
+ GV NLA +V G P LV V +K A ++D+ K++E ++E
Sbjct: 124 VPGVTQARVNLAERTALVMGSASPQDLVQAV-EKAGYGAEAIEDDAKRRERQQE 176
>sp|Q9KPZ7|COPA_VIBCH Copper-exporting P-type ATPase A OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=copA PE=3
SV=1
Length = 915
Score = 38.5 bits (88), Expect = 0.040, Method: Composition-based stats.
Identities = 34/162 (20%), Positives = 68/162 (41%), Gaps = 7/162 (4%)
Query: 1 MHCEACARKVARALKGFEGVDDITADSKASKVVVKGKTADPIK--VCE-RLQKKSGRKVE 57
++C C K+ L + + SK +V TA+ +K V E Q +
Sbjct: 82 LNCGRCVNKLTTHLSAQAEIAKLHV-SKERLSLVTTLTAEQVKALVAEVGYQAIEAEQES 140
Query: 58 LISPLPKPPPPDADDQEKKEQQKVEKKEEPPAAITVVLNVRMHCEACAQGLRKRIRKIQG 117
+P + D + + E E +++++ M C +C + K + ++G
Sbjct: 141 TFAPAASIDEKETDTPDAENSSNTEATEASSQTLSLLIK-GMTCASCVASVEKALLSVEG 199
Query: 118 VECVETNLASGQVIVKGV-VDPVKLVNDVNKKTRKQASIVKD 158
V+ + NL +V+G+ +P L+N + + + QA I+ D
Sbjct: 200 VQSAQVNLTEQSALVRGIFANPQPLLNAI-QSSGYQAEILDD 240
>sp|Q8Z8S4|COPA_SALTI Copper-exporting P-type ATPase A OS=Salmonella typhi GN=copA PE=3
SV=3
Length = 833
Score = 38.5 bits (88), Expect = 0.041, Method: Composition-based stats.
Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 14/173 (8%)
Query: 1 MHCEACARKVARALKGFEGVDDITADSKASKVVVKGKTADPIKVCERLQKKSGRKVELIS 60
+ C C ++V +L+ V+ AD ++ V G TA + E + K++G L
Sbjct: 12 LSCGHCVKRVKESLEQRPDVE--LADVTVTEAHVTG-TASADALIETI-KQAGYGATLSH 67
Query: 61 PLPKP-----PPPDADDQEKKEQQKVEKKEEPPAAITVVLNVRMHCEACAQGLRKRIRKI 115
P KP P +A E EE +L M C +C ++ ++ +
Sbjct: 68 PKAKPLTESSIPSEALAAVPHELPVATADEESQQ----LLLSGMSCASCVTRVQHALQSV 123
Query: 116 QGVECVETNLASGQVIVKGVVDPVKLVNDVNKKTRKQASIVKDEEKKQEEKKE 168
GV NLA +V G LV V +K A ++D+ K++E ++E
Sbjct: 124 PGVTQARVNLAERTALVMGSASAADLVQAV-EKAGYGAEAIEDDIKRRERQQE 175
>sp|Q8ZR95|COPA_SALTY Copper-exporting P-type ATPase A OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=copA PE=1 SV=3
Length = 833
Score = 38.1 bits (87), Expect = 0.045, Method: Composition-based stats.
Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 14/173 (8%)
Query: 1 MHCEACARKVARALKGFEGVDDITADSKASKVVVKGKTADPIKVCERLQKKSGRKVELIS 60
+ C C ++V +L+ V+ AD ++ V G TA + E + K++G L
Sbjct: 12 LSCGHCVKRVKESLEQRPDVE--LADVTVTEAHVTG-TASADALIETI-KQAGYGATLSH 67
Query: 61 PLPKP-----PPPDADDQEKKEQQKVEKKEEPPAAITVVLNVRMHCEACAQGLRKRIRKI 115
P KP P +A E EE +L M C +C ++ ++ +
Sbjct: 68 PKAKPLTESSIPSEALAAVPHELPVATADEESQQ----LLLSGMSCASCVTRVQHALQSV 123
Query: 116 QGVECVETNLASGQVIVKGVVDPVKLVNDVNKKTRKQASIVKDEEKKQEEKKE 168
GV NLA +V G LV V +K A ++D+ K++E ++E
Sbjct: 124 PGVTQARVNLAERTALVMGSASAADLVQAV-EKAGYGAEAIEDDIKRRERQQE 175
>sp|Q8ZCA7|COPA_YERPE Copper-exporting P-type ATPase A OS=Yersinia pestis GN=copA PE=3
SV=1
Length = 961
Score = 37.7 bits (86), Expect = 0.068, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 99 MHCEACAQGLRKRIRKIQGVECVETNLASGQVIVKGVVDPVKLVNDVNKKTRKQASIVKD 158
M C +C ++ ++++ GV+ NLA +V G + L+ V K A I++D
Sbjct: 235 MSCASCVSKVQNALQRVDGVQVARVNLAERSALVTGTQNNEALIAAV-KNAGYGAEIIED 293
Query: 159 EEKKQEEKKE 168
E +++E +++
Sbjct: 294 EGERRERQQQ 303
>sp|O32220|COPA_BACSU Copper-exporting P-type ATPase A OS=Bacillus subtilis (strain 168)
GN=copA PE=1 SV=2
Length = 802
Score = 36.6 bits (83), Expect = 0.14, Method: Composition-based stats.
Identities = 51/225 (22%), Positives = 85/225 (37%), Gaps = 57/225 (25%)
Query: 1 MHCEACARKVARALKGFEGVDDITAD--SKASKVVVKGKTADPIKVCERLQKKSGRKVEL 58
M C ACA ++ + LK GV D + ++ S V+ + E+++K V
Sbjct: 14 MTCAACAARIEKGLKRMPGVTDANVNLATETSNVIYDPAETGTAAIQEKIEKLGYHVVT- 72
Query: 59 ISPLPKPPPPDADDQEKKEQQKVEKKEEPPAAITVVLNVRMHCEACAQGLRKRIRKIQGV 118
+K + +E M C ACA + KR+ KI+GV
Sbjct: 73 ----------------EKAEFDIEG---------------MTCAACANRIEKRLNKIEGV 101
Query: 119 ECVETNLASGQVIVKGVVDPVKLVNDVNKKTRKQASIVKDEEKKQ----EEKKEGEKKDG 174
N A V V+ +P K+AS+ +E + K +GE+
Sbjct: 102 ANAPVNFALETVTVE--YNP------------KEASVSDLKEAVDKLGYKLKLKGEQDSE 147
Query: 175 GEEAKVDEEKNKQQLDFN--INRSEYWATKN---YSEFAYAPQIF 214
K +E K +L F+ ++ WA + ++ F + P IF
Sbjct: 148 AAAKKKEERKQTARLIFSAVLSFPLLWAMVSHFTFTSFIWVPDIF 192
>sp|P73241|ATCS_SYNY3 Cation-transporting ATPase PacS OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=pacS PE=1 SV=1
Length = 745
Score = 35.4 bits (80), Expect = 0.29, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 99 MHCEACAQGLRKRIRKIQGVECVETNLASGQVIVK--GVVDPVKLVNDVNKKTRKQASIV 156
M C ACA + + I K+ GV+ + N A Q +V G P +++ D ++ A ++
Sbjct: 12 MRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTP-QILTDAVERAGYHARVL 70
Query: 157 KDE---EKKQEEKK 167
K + ++ E++K
Sbjct: 71 KQQVLSSQQTEDRK 84
>sp|Q75DD6|CCS1_ASHGO Superoxide dismutase 1 copper chaperone OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=CCS1 PE=3 SV=1
Length = 238
Score = 34.7 bits (78), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 1 MHCEACARKVARALKGFEGVDDITADSKASKVVVKGKTADPIKVCERLQKKSGRKVEL 58
MHC C +++RAL+ GV ++T D + V V+G A P + + L +GR L
Sbjct: 16 MHCGDCTGEISRALRAVPGVQEVTPDLERQLVAVRG-IAPPSSIVQAL-AATGRDAIL 71
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 13/120 (10%)
Query: 97 VRMHCEACAQGLRKRIRKIQGVECVETNLASGQVIVKGVVDPVKLVNDVNKKTRKQASIV 156
V MHC C + + +R + GV+ V +L V V+G+ P +V + R +I+
Sbjct: 14 VPMHCGDCTGEISRALRAVPGVQEVTPDLERQLVAVRGIAPPSSIVQALAATGRD--AIL 71
Query: 157 KDEEKKQ-------EEKKEGEKKDGGEEAKVDEEKNKQQLDFNINR----SEYWATKNYS 205
+ + E G G V NK D +N ++Y+A+ S
Sbjct: 72 RGSGEPDSAAVAILESASAGGPPVRGLVRAVQVAPNKTLFDITLNGLPGPAQYYASIRAS 131
>sp|Q6CIG2|CCS1_KLULA Superoxide dismutase 1 copper chaperone OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=CCS1 PE=3 SV=1
Length = 245
Score = 34.7 bits (78), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 1 MHCEACARKVARALKGFEGVDDITADSKASKVVVKGKTADPIKVCERLQKKSGR 54
MHCE+C + + LK G+ ++T D K + + V+G A P + L K GR
Sbjct: 17 MHCESCTNDIQKCLKDVNGIKNVTFDIKDNLMNVEGHAA-PSAIINAL-KNCGR 68
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 97 VRMHCEACAQGLRKRIRKIQGVECVETNLASGQVIVKGVVDPVKLVN 143
V MHCE+C ++K ++ + G++ V ++ + V+G P ++N
Sbjct: 15 VEMHCESCTNDIQKCLKDVNGIKNVTFDIKDNLMNVEGHAAPSAIIN 61
>sp|Q6BZU2|CCS1_YARLI Superoxide dismutase 1 copper chaperone OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=CCS1 PE=3 SV=1
Length = 234
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 90 AITVVLNVRMHCEACAQGLRKRIRKIQGVECVETNLASGQVIVKGVVDPVKLVNDV 145
+ T V + CE+C +++ + +QG+E V+ L + V G P ++V V
Sbjct: 2 SFTTTFAVPLECESCCDSVKQALANVQGIESVDCKLVDQLISVTGTSAPSQIVKAV 57
>sp|Q64430|ATP7A_MOUSE Copper-transporting ATPase 1 OS=Mus musculus GN=Atp7a PE=1 SV=3
Length = 1491
Score = 32.0 bits (71), Expect = 3.3, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 14/135 (10%)
Query: 1 MHCEACARKVARALKGFEGVDDITADSKASKVVVKGKTADPIKVCERLQKKSGRKVELIS 60
MHC++C + AL + V I + +VK + + E L+K +E IS
Sbjct: 286 MHCKSCVSNIESALSTLQYVSSIVVSLENRSAIVKYNAS--LVTPEMLRKA----IEAIS 339
Query: 61 PLPKPPPPDADDQEKKEQQKVEKKEEPPAAIT-------VVLNVR-MHCEACAQGLRKRI 112
P ++ + ++ P I V+N+ M C +C Q + I
Sbjct: 340 PGQYRVSIASEVESTASSPSSSSLQKMPLNIVSQPLTQEAVININGMTCNSCVQSIEGVI 399
Query: 113 RKIQGVECVETNLAS 127
K GV+ + +LA+
Sbjct: 400 SKKPGVKSIHVSLAN 414
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.129 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,431,100
Number of Sequences: 539616
Number of extensions: 3953234
Number of successful extensions: 45859
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 483
Number of HSP's that attempted gapping in prelim test: 37086
Number of HSP's gapped (non-prelim): 6301
length of query: 225
length of database: 191,569,459
effective HSP length: 113
effective length of query: 112
effective length of database: 130,592,851
effective search space: 14626399312
effective search space used: 14626399312
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)