BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>027310
MMMATTVPLPKYMNSPELSLPASKYDRRRVGIVVVAACFHKYSSAFGQKLHPRCFLVHVA
QPYFVNNLKKMSWAIGSSVDDNGFDPSSSDSSNGRTRLIRVIQAFQTRIGARIQELRKDF
PTKLLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLRLLSKIRNL
ITMFNYWKAGLTLGLFLDSFKYEMDNIIGSCHPFIFAIDIFPTFL

High Scoring Gene Products

Symbol, full name Information P value
AT3G56830 protein from Arabidopsis thaliana 2.1e-45
NPQ7
AT1G65420 		protein from Arabidopsis thaliana 1.2e-24

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027310
        (225 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2103645 - symbol:AT3G56830 "AT3G56830" species...   477  2.1e-45   1
TAIR|locus:2206305 - symbol:NPQ7 "AT1G65420" species:3702...   281  1.2e-24   1


>TAIR|locus:2103645 [details] [associations]
            symbol:AT3G56830 "AT3G56830" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009507 "chloroplast" evidence=IDA] GO:GO:0009507
            EMBL:CP002686 InterPro:IPR007572 Pfam:PF04483 IPI:IPI00539968
            RefSeq:NP_191242.2 UniGene:At.75281 UniGene:At.9843
            EnsemblPlants:AT3G56830.1 GeneID:824850 KEGG:ath:AT3G56830
            OMA:ECIGALM PhylomeDB:F4J0S9 Uniprot:F4J0S9
        Length = 230

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 94/155 (60%), Positives = 118/155 (76%)

Query:    54 CFLVHVAQPYFVNNLKKMSWA-IGSSVDDNGFDPSSSDSSNGRTR---LIRVIQAFQTRI 109
             C  +H AQP  V + ++MSW  I SSV  + FDP+S  SSN  +R   LI+ IQ  ++++
Sbjct:    36 CHFLHPAQPLLVRHQRRMSWTTIKSSVGGDRFDPASGSSSNNSSRGLRLIKAIQVLRSKL 95

Query:   110 GARIQELRKDFPTKLLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRA 169
               +IQE++KD P KL F LVGFY ATAF+T IGQTGDWD+LSA LAV+VVE IGALMYRA
Sbjct:    96 LVKIQEIKKDLPKKLFFLLVGFYSATAFSTFIGQTGDWDVLSAGLAVLVVECIGALMYRA 155

Query:   170 SLRLLSKIRNLITMFNYWKAGLTLGLFLDSFKYEM 204
             S+ L++K+R+ ITMFNYWK GL LGLFLDSFKYE+
Sbjct:   156 SIPLINKMRSTITMFNYWKTGLALGLFLDSFKYEV 190


>TAIR|locus:2206305 [details] [associations]
            symbol:NPQ7 "AT1G65420" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0010196 "nonphotochemical
            quenching" evidence=IMP] GO:GO:0016021 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0009507 EMBL:AC004512
            UniGene:At.28694 UniGene:At.66795 GO:GO:0010196 EMBL:BT025776
            EMBL:AY088215 IPI:IPI00544455 PIR:T02365 RefSeq:NP_564851.1
            STRING:O80813 EnsemblPlants:AT1G65420.1 GeneID:842853
            KEGG:ath:AT1G65420 TAIR:At1g65420 eggNOG:NOG240593
            HOGENOM:HOG000155497 InParanoid:O80813 OMA:IGMLMYK PhylomeDB:O80813
            ProtClustDB:CLSN2689032 Genevestigator:O80813 GermOnline:AT1G65420
            InterPro:IPR007572 Pfam:PF04483 Uniprot:O80813
        Length = 197

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 59/140 (42%), Positives = 90/140 (64%)

Query:    69 KKMSWAI--GSSVD-DNGFDPS-SSDSSN-GRTRLIRVIQAFQTRIGARIQELRKDFPTK 123
             +K+++A+  GSS+  D+G     + D +  G TRL R+  A   ++  +I   RK+FP K
Sbjct:    55 RKIAFALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGRIAIAGGKQLLGKINSARKNFPMK 114

Query:   124 LLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYR--ASLRLLSKIRNLI 181
             +   L+GFY A A AT++GQTGDWD+L A + V  +EGIG LMY+  +S     K+++ +
Sbjct:   115 IFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKPSSSMFSGKLQSFV 174

Query:   182 TMFNYWKAGLTLGLFLDSFK 201
                N+WKAG+ LGLF+D+FK
Sbjct:   175 VFMNFWKAGVCLGLFVDAFK 194


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.328   0.140   0.431    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      225       225   0.00077  113 3  11 22  0.43    32
                                                     32  0.41    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  179 KB (2104 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.07u 0.09s 19.16t   Elapsed:  00:00:01
  Total cpu time:  19.07u 0.09s 19.16t   Elapsed:  00:00:01
  Start:  Fri May 10 09:16:18 2013   End:  Fri May 10 09:16:19 2013

Back to top