Query 027310
Match_columns 225
No_of_seqs 113 out of 134
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 13:05:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027310.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027310hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kdc_A Diacylglycerol kinase; 44.6 51 0.0018 25.8 6.1 66 94-166 3-75 (121)
2 2iub_A CORA, divalent cation t 29.5 1.3E+02 0.0044 26.4 6.9 36 100-135 286-321 (363)
3 3e56_A Putative uncharacterize 27.1 21 0.00072 27.8 1.1 18 193-210 62-79 (113)
4 2zy9_A Mg2+ transporter MGTE; 24.6 2.1E+02 0.0072 26.1 7.6 28 117-144 306-333 (473)
5 4ev6_A Magnesium transport pro 21.4 1.8E+02 0.0061 25.2 6.2 12 112-123 274-285 (339)
6 3qle_A TIM50P; chaperone, mito 14.1 43 0.0015 27.9 0.4 19 203-222 63-81 (204)
7 2xf7_A GP23.1; viral protein; 11.1 68 0.0023 22.0 0.6 13 191-203 5-17 (51)
8 2a65_A Leutaa, Na(+):neurotran 10.6 2.5E+02 0.0087 26.5 4.5 59 101-162 359-421 (519)
9 2l2t_A Receptor tyrosine-prote 9.8 1.7E+02 0.0057 19.4 2.1 18 155-172 22-39 (44)
10 2ks1_B Epidermal growth factor 9.4 1.8E+02 0.0063 19.1 2.2 22 150-171 18-39 (44)
No 1
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=44.57 E-value=51 Score=25.76 Aligned_cols=66 Identities=17% Similarity=0.197 Sum_probs=41.7
Q ss_pred CCccHHHHHHHHHHHHHHH---Hh---hhhhhhhHHHHHHHHHHHHhhhhhhhhhcccCch-HHHHHHHHHHHHHhhhhh
Q 027310 94 GRTRLIRVIQAFQTRIGAR---IQ---ELRKDFPTKLLFFLVGFYCATAFATVIGQTGDWD-ILSAALAVVVVEGIGALM 166 (225)
Q Consensus 94 q~TRL~rli~~l~~~L~~~---~~---npWRRlSl~LIsLL~GFflgna~sTi~Gq~g~wD-~laA~iiVl~iEvis~l~ 166 (225)
++|.+.+++++..-.++.. ++ +-+..+-+.++.+.+||+++-+ ..+|= .+.+..+|+..|++|--.
T Consensus 3 ~~~g~~r~~~s~~yA~~Gl~~a~~~E~~fr~~~~~~~~~i~~~~~l~~s-------~~e~~~li~~i~lVl~~EllNTAI 75 (121)
T 2kdc_A 3 NTTGFTRIIKAAGYSWKGLRAAWINEAAFRQEGVAVLLAVVIACWLDVD-------AITRVLLISSVMLVMIVEILNSAI 75 (121)
T ss_dssp CCSSHHHHHHHHHTHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHCCCC-------CSHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhCC-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777776665554443 32 2355666778888888887752 33443 345667888999987543
No 2
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=29.53 E-value=1.3e+02 Score=26.44 Aligned_cols=36 Identities=11% Similarity=0.224 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhh
Q 027310 100 RVIQAFQTRIGARIQELRKDFPTKLLFFLVGFYCAT 135 (225)
Q Consensus 100 rli~~l~~~L~~~~~npWRRlSl~LIsLL~GFflgn 135 (225)
.+.+.....++....+.-|++++....++--=++++
T Consensus 286 ~l~d~~~s~is~~~N~imk~LTiit~IflP~T~IaG 321 (363)
T 2iub_A 286 GLLDVYLSSVSNKTNEVMKVLTIIATIFMPLTFIAG 321 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333344444444445555554444433333333
No 3
>3e56_A Putative uncharacterized protein; alpha-beta sandwich, interlocked homodimer, ASR1734, unknown; 2.01A {Nostoc punctiforme}
Probab=27.14 E-value=21 Score=27.81 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=15.4
Q ss_pred HHHHHHHhcccchhhhcc
Q 027310 193 LGLFLDSFKYEMDNIIGS 210 (225)
Q Consensus 193 YGLFLEAFKL~~~~~~~~ 210 (225)
.-.++|||--|-|||||-
T Consensus 62 lqvllDA~teGSDdfLE~ 79 (113)
T 3e56_A 62 LQVLLDALTEGSDDFLET 79 (113)
T ss_dssp HHHHHHHHHHCCTTTEEE
T ss_pred HHHHHHHHhcCcHHHHHH
Confidence 346899999999999984
No 4
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=24.61 E-value=2.1e+02 Score=26.14 Aligned_cols=28 Identities=7% Similarity=0.079 Sum_probs=21.4
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhhhhcc
Q 027310 117 RKDFPTKLLFFLVGFYCATAFATVIGQT 144 (225)
Q Consensus 117 WRRlSl~LIsLL~GFflgna~sTi~Gq~ 144 (225)
.+|+.++++.++.|.+.|+.++.+-...
T Consensus 306 ~~R~~wl~~~~~~~~l~~~vi~~fe~~l 333 (473)
T 2zy9_A 306 LARVRWLVILILTGMVTSSILQGFESVL 333 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899998888888888777654433
No 5
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=21.43 E-value=1.8e+02 Score=25.19 Aligned_cols=12 Identities=8% Similarity=0.221 Sum_probs=5.1
Q ss_pred HHhhhhhhhhHH
Q 027310 112 RIQELRKDFPTK 123 (225)
Q Consensus 112 ~~~npWRRlSl~ 123 (225)
...+.-|.+++.
T Consensus 274 ~~N~~mk~LTii 285 (339)
T 4ev6_A 274 KMNQIMKILTMV 285 (339)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333344455443
No 6
>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET: 1PE; 1.83A {Saccharomyces cerevisiae EC1118}
Probab=14.07 E-value=43 Score=27.87 Aligned_cols=19 Identities=21% Similarity=0.525 Sum_probs=8.4
Q ss_pred cchhhhcccCCeeEeecccc
Q 027310 203 EMDNIIGSCHPFIFAIDIFP 222 (225)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~ 222 (225)
|+||||+.|..+ |||-|||
T Consensus 63 gl~eFL~~l~~~-yeivI~T 81 (204)
T 3qle_A 63 GADYFLGYLSQY-YEIVLFS 81 (204)
T ss_dssp THHHHHHHHTTT-EEEEEEC
T ss_pred CHHHHHHHHHhC-CEEEEEc
Confidence 344444444432 4444443
No 7
>2xf7_A GP23.1; viral protein; 1.61A {Bacillus phage SPP1} PDB: 2xf5_A 2xf6_A
Probab=11.12 E-value=68 Score=21.95 Aligned_cols=13 Identities=46% Similarity=0.644 Sum_probs=10.9
Q ss_pred HHHHHHHHHhccc
Q 027310 191 LTLGLFLDSFKYE 203 (225)
Q Consensus 191 llYGLFLEAFKL~ 203 (225)
++||.|+|..|=|
T Consensus 5 ~L~G~F~D~W~~G 17 (51)
T 2xf7_A 5 LLYGYFLDSWLDG 17 (51)
T ss_dssp TTHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcc
Confidence 5899999998855
No 8
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=10.65 E-value=2.5e+02 Score=26.54 Aligned_cols=59 Identities=12% Similarity=0.094 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhhhh-hcccCchHHHH---HHHHHHHHHh
Q 027310 101 VIQAFQTRIGARIQELRKDFPTKLLFFLVGFYCATAFATVI-GQTGDWDILSA---ALAVVVVEGI 162 (225)
Q Consensus 101 li~~l~~~L~~~~~npWRRlSl~LIsLL~GFflgna~sTi~-Gq~g~wD~laA---~iiVl~iEvi 162 (225)
+++.+.+-+.+.+ +|+|.-..++..+++|.+|-...|-. | ...+|-+++ +.++.+.|.+
T Consensus 359 ~~E~~vt~l~D~~--~~~R~~~~~~v~~~~fllgl~~~~~~~g-~~~~D~~~~~~~l~~~~l~~~i 421 (519)
T 2a65_A 359 IMQPMIAFLEDEL--KLSRKHAVLWTAAIVFFSAHLVMFLNKS-LDEMDFWAGTIGVVFFGLTELI 421 (519)
T ss_dssp HHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHBTTH-HHHHHHHTTTHHHHHHHHHHHH
T ss_pred HhhHhHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHcCCCC-cchHHHHHhHHHHHHHHHHHHH
Confidence 3445555555555 35555556666667777776666655 5 555555543 4555666754
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=9.81 E-value=1.7e+02 Score=19.38 Aligned_cols=18 Identities=22% Similarity=0.049 Sum_probs=8.2
Q ss_pred HHHHHHHhhhhhccchhh
Q 027310 155 AVVVVEGIGALMYRASLR 172 (225)
Q Consensus 155 iVl~iEvis~l~YR~~~~ 172 (225)
+++++-+..+++.|++..
T Consensus 22 ~v~ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 22 ILVIVGLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHhhhhhh
Confidence 333333444455555443
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=9.41 E-value=1.8e+02 Score=19.08 Aligned_cols=22 Identities=27% Similarity=0.170 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhhhhhccchh
Q 027310 150 LSAALAVVVVEGIGALMYRASL 171 (225)
Q Consensus 150 laA~iiVl~iEvis~l~YR~~~ 171 (225)
+..+++++++=+..+++.|++.
T Consensus 18 VgGv~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 18 VGALLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHhhhhH
Confidence 3334444444455455555544
Done!