Query 027310
Match_columns 225
No_of_seqs 113 out of 134
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 13:06:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027310.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027310hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 40.6 71 0.0051 24.3 8.9 30 116-145 7-36 (173)
2 d1ta0a_ c.108.1.16 (A:) Carbox 16.9 7.9 0.00057 29.2 -1.4 19 203-222 59-77 (181)
3 d2a9pa1 c.23.1.1 (A:2-118) DNA 14.1 12 0.00089 25.7 -0.9 19 196-216 86-104 (117)
4 d1zh2a1 c.23.1.1 (A:2-120) Tra 13.7 18 0.0013 24.8 -0.0 19 196-216 86-104 (119)
5 d1zgza1 c.23.1.1 (A:2-121) Tor 12.5 14 0.001 25.2 -0.9 20 195-216 86-105 (120)
6 d2j0141 d.325.1.2 (4:1-50) Rib 12.5 21 0.0016 22.6 0.1 10 206-215 34-43 (50)
7 d1ny5a1 c.23.1.1 (A:1-137) Tra 11.4 19 0.0014 25.3 -0.5 20 195-216 86-105 (137)
8 d1xhfa1 c.23.1.1 (A:2-122) Aer 10.9 25 0.0019 24.2 -0.0 18 197-216 89-106 (121)
9 d1kgsa2 c.23.1.1 (A:2-123) Pho 9.8 21 0.0015 24.6 -0.8 20 195-216 87-106 (122)
10 d1qkka_ c.23.1.1 (A:) Transcri 9.4 33 0.0024 24.2 0.1 19 195-215 86-104 (140)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=40.63 E-value=71 Score=24.27 Aligned_cols=30 Identities=7% Similarity=0.057 Sum_probs=23.8
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhhhhhccc
Q 027310 116 LRKDFPTKLLFFLVGFYCATAFATVIGQTG 145 (225)
Q Consensus 116 pWRRlSl~LIsLL~GFflgna~sTi~Gq~g 145 (225)
-.+|++++++.++.|...+..++.+-....
T Consensus 7 ~k~RlpWL~i~l~~~~~~a~ii~~Fe~~l~ 36 (173)
T d2yvxa3 7 WLARVRWLVILILTGMVTSSILQGFESVLE 36 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347999999999999999988886554443
No 2
>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.86 E-value=7.9 Score=29.19 Aligned_cols=19 Identities=16% Similarity=0.392 Sum_probs=9.2
Q ss_pred cchhhhcccCCeeEeecccc
Q 027310 203 EMDNIIGSCHPFIFAIDIFP 222 (225)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~ 222 (225)
|+||||+.|... |||-|||
T Consensus 59 ~l~eFL~~l~~~-yei~I~T 77 (181)
T d1ta0a_ 59 HVDEFLQRMGEL-FECVLFT 77 (181)
T ss_dssp THHHHHHHHHHH-SEEEEEC
T ss_pred CHHHHHHHHHhc-eEEEEEc
Confidence 345555555544 3555544
No 3
>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=14.08 E-value=12 Score=25.73 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=15.1
Q ss_pred HHHHhcccchhhhcccCCeeE
Q 027310 196 FLDSFKYEMDNIIGSCHPFIF 216 (225)
Q Consensus 196 FLEAFKL~~~~~~~~~~~~~~ 216 (225)
-.+|++.|+|+|+.- ||+.
T Consensus 86 ~~~a~~~Ga~d~l~K--P~~~ 104 (117)
T d2a9pa1 86 KVIGLELGADDYVTK--PFSN 104 (117)
T ss_dssp HHHHHHHTCSEEEES--SCCH
T ss_pred HHHHHHcCCCEEEEC--CCCH
Confidence 468899999999875 7754
No 4
>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=13.72 E-value=18 Score=24.82 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=15.3
Q ss_pred HHHHhcccchhhhcccCCeeE
Q 027310 196 FLDSFKYEMDNIIGSCHPFIF 216 (225)
Q Consensus 196 FLEAFKL~~~~~~~~~~~~~~ 216 (225)
..+|++.|+|+|+.- ||..
T Consensus 86 ~~~a~~~Ga~dyl~K--P~~~ 104 (119)
T d1zh2a1 86 KIAALDAGADDYLSK--PFGI 104 (119)
T ss_dssp HHHHHHHTCSEEEES--SCCH
T ss_pred HHHHHHcCCCEEEEC--CCCH
Confidence 469999999999976 7653
No 5
>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=12.53 E-value=14 Score=25.23 Aligned_cols=20 Identities=10% Similarity=0.198 Sum_probs=15.0
Q ss_pred HHHHHhcccchhhhcccCCeeE
Q 027310 195 LFLDSFKYEMDNIIGSCHPFIF 216 (225)
Q Consensus 195 LFLEAFKL~~~~~~~~~~~~~~ 216 (225)
.-.+|++.|+|+|+.- ||+.
T Consensus 86 ~~~~a~~~Ga~dyl~K--P~~~ 105 (120)
T d1zgza1 86 DRIVGLEMGADDYVTK--PLEL 105 (120)
T ss_dssp HHHHHHHHTCSEEEES--SCCH
T ss_pred HHHHHHHCCCCEEEEC--CCCH
Confidence 3467899999999865 6654
No 6
>d2j0141 d.325.1.2 (4:1-50) Ribosomal protein L31p {Thermus thermophilus [TaxId: 274]}
Probab=12.51 E-value=21 Score=22.59 Aligned_cols=10 Identities=40% Similarity=1.158 Sum_probs=7.5
Q ss_pred hhhcccCCee
Q 027310 206 NIIGSCHPFI 215 (225)
Q Consensus 206 ~~~~~~~~~~ 215 (225)
|+-..||||+
T Consensus 34 dIcs~cHPFy 43 (50)
T d2j0141 34 EVCSKCHPFY 43 (50)
T ss_dssp CSCCCCCSSS
T ss_pred EECCCCCCcC
Confidence 5567889986
No 7
>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=11.44 E-value=19 Score=25.32 Aligned_cols=20 Identities=10% Similarity=0.311 Sum_probs=15.8
Q ss_pred HHHHHhcccchhhhcccCCeeE
Q 027310 195 LFLDSFKYEMDNIIGSCHPFIF 216 (225)
Q Consensus 195 LFLEAFKL~~~~~~~~~~~~~~ 216 (225)
...+|++.|+++|+.- ||+.
T Consensus 86 ~~~~a~~~Ga~dyl~K--P~~~ 105 (137)
T d1ny5a1 86 TAVEAMKMGAYDFLTK--PCML 105 (137)
T ss_dssp HHHHHHTTTCCEEEEE--SCCH
T ss_pred HHHHHHHcCCCEEEeC--CCCH
Confidence 4569999999999975 6543
No 8
>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=10.85 E-value=25 Score=24.16 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=14.6
Q ss_pred HHHhcccchhhhcccCCeeE
Q 027310 197 LDSFKYEMDNIIGSCHPFIF 216 (225)
Q Consensus 197 LEAFKL~~~~~~~~~~~~~~ 216 (225)
.+|++.|+|+||.- ||+.
T Consensus 89 ~~a~~~Ga~dyl~K--P~~~ 106 (121)
T d1xhfa1 89 ILGLEIGADDYITK--PFNP 106 (121)
T ss_dssp HHHHHHTCSEEEES--SCCH
T ss_pred HHHHHcCCCEEEeC--CCCH
Confidence 68999999999965 7753
No 9
>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}
Probab=9.85 E-value=21 Score=24.57 Aligned_cols=20 Identities=15% Similarity=0.350 Sum_probs=16.2
Q ss_pred HHHHHhcccchhhhcccCCeeE
Q 027310 195 LFLDSFKYEMDNIIGSCHPFIF 216 (225)
Q Consensus 195 LFLEAFKL~~~~~~~~~~~~~~ 216 (225)
.-.+|++.|+|+|+.- ||+.
T Consensus 87 ~~~~~~~~Ga~~yl~K--P~~~ 106 (122)
T d1kgsa2 87 YRVKGLNMGADDYLPK--PFDL 106 (122)
T ss_dssp HHHHTCCCCCSEEEES--SCCH
T ss_pred HHHHHHHcCCceeecC--CCCH
Confidence 4678999999999975 7653
No 10
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}
Probab=9.41 E-value=33 Score=24.16 Aligned_cols=19 Identities=16% Similarity=0.375 Sum_probs=15.3
Q ss_pred HHHHHhcccchhhhcccCCee
Q 027310 195 LFLDSFKYEMDNIIGSCHPFI 215 (225)
Q Consensus 195 LFLEAFKL~~~~~~~~~~~~~ 215 (225)
...+|+|.|++||+.- ||+
T Consensus 86 ~~~~a~~~Ga~dyl~K--P~~ 104 (140)
T d1qkka_ 86 MAVQAIQDGAYDFIAK--PFA 104 (140)
T ss_dssp HHHHHHHTTCCEEEES--SCC
T ss_pred HHHHHHHcCCCEeecC--CCC
Confidence 4579999999999974 664
Done!