Query 027311
Match_columns 225
No_of_seqs 200 out of 1703
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 08:02:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027311.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027311hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02399 phospholipid hydroper 100.0 4.1E-34 9E-39 226.4 18.2 163 63-225 73-235 (236)
2 PLN02412 probable glutathione 100.0 7.4E-34 1.6E-38 216.0 17.2 161 65-225 5-165 (167)
3 PTZ00056 glutathione peroxidas 100.0 3.6E-33 7.9E-38 217.5 16.8 161 64-225 14-179 (199)
4 cd00340 GSH_Peroxidase Glutath 100.0 1.1E-31 2.4E-36 201.3 15.5 150 69-219 2-151 (152)
5 PTZ00256 glutathione peroxidas 100.0 2.5E-31 5.4E-36 205.1 16.5 162 64-225 15-182 (183)
6 PRK10606 btuE putative glutath 100.0 6.5E-31 1.4E-35 201.2 16.7 157 67-224 3-181 (183)
7 TIGR02540 gpx7 putative glutat 100.0 1.8E-30 3.8E-35 195.0 15.7 148 69-224 2-153 (153)
8 COG0386 BtuE Glutathione perox 100.0 2.4E-28 5.1E-33 176.0 15.3 158 67-225 3-161 (162)
9 PF08534 Redoxin: Redoxin; In 100.0 3.2E-28 6.8E-33 181.3 11.4 124 64-212 1-136 (146)
10 PRK15412 thiol:disulfide inter 100.0 1.3E-27 2.8E-32 184.8 12.2 135 63-224 39-176 (185)
11 KOG1651 Glutathione peroxidase 99.9 6.3E-27 1.4E-31 170.6 14.3 162 64-225 9-170 (171)
12 COG1225 Bcp Peroxiredoxin [Pos 99.9 2.6E-26 5.6E-31 169.3 15.0 148 62-223 3-155 (157)
13 PF00578 AhpC-TSA: AhpC/TSA fa 99.9 1E-26 2.3E-31 168.2 11.3 123 65-206 1-124 (124)
14 PRK09437 bcp thioredoxin-depen 99.9 5.3E-26 1.2E-30 170.8 14.2 147 63-222 4-151 (154)
15 PRK00522 tpx lipid hydroperoxi 99.9 8.7E-26 1.9E-30 171.7 15.2 145 62-223 17-165 (167)
16 PRK03147 thiol-disulfide oxido 99.9 1E-25 2.2E-30 172.3 14.3 138 62-223 34-171 (173)
17 cd03017 PRX_BCP Peroxiredoxin 99.9 6.2E-26 1.3E-30 167.6 12.0 138 67-220 1-139 (140)
18 TIGR00385 dsbE periplasmic pro 99.9 8.9E-26 1.9E-30 172.7 12.7 135 63-224 34-171 (173)
19 cd02969 PRX_like1 Peroxiredoxi 99.9 1.5E-25 3.2E-30 171.3 13.7 143 66-225 1-153 (171)
20 cd03010 TlpA_like_DsbE TlpA-li 99.9 1E-25 2.2E-30 163.9 10.6 123 68-216 2-126 (127)
21 cd03014 PRX_Atyp2cys Peroxired 99.9 5.7E-25 1.2E-29 163.2 13.9 136 65-220 2-141 (143)
22 cd03015 PRX_Typ2cys Peroxiredo 99.9 7.4E-25 1.6E-29 167.7 14.5 141 65-223 1-156 (173)
23 cd03018 PRX_AhpE_like Peroxire 99.9 4.5E-25 9.8E-30 164.7 12.5 130 64-211 2-134 (149)
24 TIGR02661 MauD methylamine deh 99.9 1.4E-24 3.1E-29 168.2 14.2 132 62-223 45-178 (189)
25 cd03012 TlpA_like_DipZ_like Tl 99.9 5.9E-25 1.3E-29 159.7 10.8 113 79-210 13-125 (126)
26 cd03008 TryX_like_RdCVF Trypar 99.9 3.7E-25 8.1E-30 163.1 9.3 107 80-207 16-129 (146)
27 TIGR03137 AhpC peroxiredoxin. 99.9 1.3E-24 2.8E-29 168.2 12.3 140 64-221 3-153 (187)
28 PRK13190 putative peroxiredoxi 99.9 2.5E-24 5.4E-29 168.4 13.8 142 64-224 3-154 (202)
29 PRK14018 trifunctional thiored 99.9 4.3E-24 9.2E-29 185.7 13.8 139 63-222 32-171 (521)
30 cd02967 mauD Methylamine utili 99.9 9.5E-24 2.1E-28 150.6 12.1 110 70-207 1-112 (114)
31 PRK13599 putative peroxiredoxi 99.9 1.4E-23 3.1E-28 165.1 14.2 143 64-223 3-155 (215)
32 cd02968 SCO SCO (an acronym fo 99.9 5.5E-24 1.2E-28 157.6 11.0 137 68-209 1-142 (142)
33 PRK10382 alkyl hydroperoxide r 99.9 3.3E-23 7.2E-28 159.5 13.1 142 64-223 3-155 (187)
34 PRK13191 putative peroxiredoxi 99.9 6.9E-23 1.5E-27 161.3 14.6 143 63-223 7-160 (215)
35 PLN02919 haloacid dehalogenase 99.9 2E-23 4.2E-28 196.7 13.5 143 63-224 391-536 (1057)
36 cd03016 PRX_1cys Peroxiredoxin 99.9 4.5E-23 9.8E-28 161.5 13.1 142 65-223 1-153 (203)
37 TIGR01626 ytfJ_HI0045 conserve 99.9 6.6E-24 1.4E-28 161.7 8.2 136 59-218 19-174 (184)
38 cd02971 PRX_family Peroxiredox 99.9 6.8E-23 1.5E-27 151.3 12.3 129 68-212 1-131 (140)
39 PRK15000 peroxidase; Provision 99.9 8.6E-23 1.9E-27 159.2 12.9 142 64-223 3-161 (200)
40 PTZ00137 2-Cys peroxiredoxin; 99.9 1.4E-22 3E-27 162.6 13.8 145 60-223 65-224 (261)
41 PRK13189 peroxiredoxin; Provis 99.9 1.8E-22 4E-27 159.8 14.1 143 63-223 9-162 (222)
42 cd02970 PRX_like2 Peroxiredoxi 99.9 6.5E-23 1.4E-27 152.8 11.0 130 68-209 1-148 (149)
43 PRK13728 conjugal transfer pro 99.9 1.1E-22 2.4E-27 154.1 10.7 120 64-225 50-172 (181)
44 cd03011 TlpA_like_ScsD_MtbDsbE 99.9 2E-22 4.2E-27 145.7 11.1 121 70-219 1-121 (123)
45 cd02964 TryX_like_family Trypa 99.9 4.8E-23 1E-27 150.9 8.0 111 77-209 4-118 (132)
46 cd02966 TlpA_like_family TlpA- 99.9 1.7E-21 3.7E-26 137.9 12.1 116 71-209 1-116 (116)
47 PTZ00253 tryparedoxin peroxida 99.9 1.1E-21 2.5E-26 153.2 12.0 131 63-211 6-147 (199)
48 cd03009 TryX_like_TryX_NRX Try 99.9 2.3E-22 5E-27 147.0 7.5 112 74-208 3-117 (131)
49 PF02630 SCO1-SenC: SCO1/SenC; 99.8 1.3E-20 2.9E-25 144.0 10.1 140 65-209 28-173 (174)
50 PF13905 Thioredoxin_8: Thiore 99.8 6.3E-21 1.4E-25 131.6 7.0 94 89-203 1-95 (95)
51 cd03013 PRX5_like Peroxiredoxi 99.8 5.8E-20 1.3E-24 137.9 11.5 133 65-212 1-142 (155)
52 COG1999 Uncharacterized protei 99.8 2.5E-19 5.4E-24 140.2 13.7 150 71-225 49-205 (207)
53 COG0450 AhpC Peroxiredoxin [Po 99.8 5.5E-19 1.2E-23 133.2 13.5 143 63-223 3-160 (194)
54 TIGR02738 TrbB type-F conjugat 99.8 1.7E-19 3.6E-24 134.5 9.7 109 79-224 44-153 (153)
55 PF00255 GSHPx: Glutathione pe 99.8 7.5E-18 1.6E-22 117.5 11.0 106 70-176 2-107 (108)
56 cd02950 TxlA TRX-like protein 99.7 4.5E-18 9.7E-23 125.8 8.2 107 74-225 3-111 (142)
57 KOG2501 Thioredoxin, nucleored 99.7 1.6E-16 3.5E-21 116.4 9.2 115 72-207 15-132 (157)
58 KOG2792 Putative cytochrome C 99.7 2.6E-16 5.7E-21 122.8 10.5 148 70-222 120-273 (280)
59 cd02985 TRX_CDSP32 TRX family, 99.7 4.8E-16 1E-20 108.8 9.9 90 86-222 12-101 (103)
60 KOG0910 Thioredoxin-like prote 99.6 1.4E-15 3E-20 110.5 9.0 90 88-225 60-149 (150)
61 KOG0855 Alkyl hydroperoxide re 99.6 3.5E-15 7.6E-20 109.0 10.9 144 60-221 60-206 (211)
62 cd02963 TRX_DnaJ TRX domain, D 99.6 3.5E-15 7.5E-20 105.9 9.8 91 86-223 21-111 (111)
63 cd02951 SoxW SoxW family; SoxW 99.6 8.1E-15 1.8E-19 106.1 10.2 104 88-225 12-120 (125)
64 cd02948 TRX_NDPK TRX domain, T 99.6 9.5E-15 2.1E-19 102.0 9.7 87 88-223 16-102 (102)
65 TIGR02740 TraF-like TraF-like 99.6 3E-15 6.6E-20 121.8 8.1 109 78-224 155-264 (271)
66 cd02999 PDI_a_ERp44_like PDIa 99.6 5.8E-15 1.3E-19 102.7 8.1 86 85-219 14-99 (100)
67 cd02956 ybbN ybbN protein fami 99.6 1.6E-14 3.6E-19 99.5 9.3 86 88-221 11-96 (96)
68 cd02953 DsbDgamma DsbD gamma f 99.6 2.8E-14 6E-19 100.0 8.8 91 88-221 10-104 (104)
69 cd02954 DIM1 Dim1 family; Dim1 99.5 2.3E-14 5.1E-19 100.9 7.9 79 88-214 13-91 (114)
70 PRK09381 trxA thioredoxin; Pro 99.5 9.5E-14 2.1E-18 98.0 9.7 90 88-225 20-109 (109)
71 PHA02278 thioredoxin-like prot 99.5 1E-13 2.3E-18 96.6 8.6 87 88-218 13-99 (103)
72 PRK10996 thioredoxin 2; Provis 99.5 8.6E-14 1.9E-18 102.6 8.4 89 88-224 51-139 (139)
73 cd03003 PDI_a_ERdj5_N PDIa fam 99.5 1.2E-13 2.7E-18 96.1 7.8 94 77-218 6-99 (101)
74 cd02994 PDI_a_TMX PDIa family, 99.5 3.4E-13 7.4E-18 93.8 9.3 86 87-221 15-100 (101)
75 COG3118 Thioredoxin domain-con 99.5 1.9E-13 4.2E-18 109.6 9.0 89 88-224 42-130 (304)
76 PF13098 Thioredoxin_2: Thiore 99.4 9.4E-14 2E-18 98.5 4.8 106 88-220 4-112 (112)
77 cd03004 PDI_a_ERdj5_C PDIa fam 99.4 9.9E-13 2.1E-17 92.0 9.2 85 88-219 18-103 (104)
78 cd03005 PDI_a_ERp46 PDIa famil 99.4 4.4E-13 9.6E-18 93.2 7.0 82 91-219 18-101 (102)
79 cd03000 PDI_a_TMX3 PDIa family 99.4 1.1E-12 2.3E-17 91.9 8.9 88 88-223 14-103 (104)
80 cd02949 TRX_NTR TRX domain, no 99.4 1.5E-12 3.2E-17 90.0 9.2 85 88-220 12-96 (97)
81 PLN00410 U5 snRNP protein, DIM 99.4 1.7E-12 3.6E-17 95.0 9.7 90 88-224 22-120 (142)
82 KOG0852 Alkyl hydroperoxide re 99.4 3.9E-12 8.4E-17 94.0 11.2 127 64-208 5-141 (196)
83 TIGR01295 PedC_BrcD bacterioci 99.4 4E-12 8.7E-17 91.5 11.1 98 88-220 22-120 (122)
84 cd03006 PDI_a_EFP1_N PDIa fami 99.4 1.5E-12 3.3E-17 92.3 8.6 85 88-219 28-112 (113)
85 TIGR01126 pdi_dom protein disu 99.4 1.8E-12 3.9E-17 90.0 8.2 89 88-223 12-101 (102)
86 cd02993 PDI_a_APS_reductase PD 99.4 2E-12 4.3E-17 91.3 8.3 87 88-218 20-107 (109)
87 cd03002 PDI_a_MPD1_like PDI fa 99.4 2.1E-12 4.5E-17 91.0 8.0 88 88-220 17-108 (109)
88 COG2077 Tpx Peroxiredoxin [Pos 99.4 7.4E-12 1.6E-16 90.5 10.8 128 61-207 16-147 (158)
89 KOG0907 Thioredoxin [Posttrans 99.4 3.9E-12 8.4E-17 88.9 8.8 86 88-223 20-105 (106)
90 TIGR01068 thioredoxin thioredo 99.4 6.2E-12 1.3E-16 87.0 9.4 88 89-224 14-101 (101)
91 cd02959 ERp19 Endoplasmic reti 99.3 1.3E-12 2.8E-17 93.4 5.0 47 84-131 14-60 (117)
92 cd03065 PDI_b_Calsequestrin_N 99.3 1.5E-11 3.3E-16 87.8 10.0 88 89-224 27-119 (120)
93 KOG0854 Alkyl hydroperoxide re 99.3 3.5E-11 7.6E-16 89.0 11.9 148 63-223 6-167 (224)
94 cd02996 PDI_a_ERp44 PDIa famil 99.3 5.7E-12 1.2E-16 88.8 7.6 85 88-219 17-107 (108)
95 PF00085 Thioredoxin: Thioredo 99.3 1.3E-11 2.8E-16 85.7 9.2 87 88-222 16-102 (103)
96 cd02997 PDI_a_PDIR PDIa family 99.3 4.7E-12 1E-16 88.3 6.9 87 88-219 16-103 (104)
97 PTZ00443 Thioredoxin domain-co 99.3 1.1E-11 2.5E-16 97.8 9.4 89 88-224 51-139 (224)
98 cd02962 TMX2 TMX2 family; comp 99.3 1.3E-11 2.8E-16 91.9 9.0 81 88-209 46-126 (152)
99 cd02986 DLP Dim1 family, Dim1- 99.3 1.8E-11 3.8E-16 85.8 7.9 43 88-131 13-55 (114)
100 PRK00293 dipZ thiol:disulfide 99.3 1.6E-11 3.4E-16 109.9 9.7 97 85-225 470-571 (571)
101 cd02984 TRX_PICOT TRX domain, 99.3 2.9E-11 6.3E-16 83.3 8.8 83 89-220 14-96 (97)
102 cd02965 HyaE HyaE family; HyaE 99.3 4.5E-11 9.7E-16 83.8 9.3 82 88-217 26-109 (111)
103 cd02998 PDI_a_ERp38 PDIa famil 99.3 2.3E-11 4.9E-16 84.8 7.5 87 88-219 17-104 (105)
104 PTZ00051 thioredoxin; Provisio 99.3 3.8E-11 8.1E-16 82.9 8.5 80 88-217 17-96 (98)
105 cd02961 PDI_a_family Protein D 99.2 1.7E-11 3.6E-16 84.4 6.0 86 88-219 14-100 (101)
106 cd02975 PfPDO_like_N Pyrococcu 99.2 1E-10 2.2E-15 83.1 10.1 88 88-225 21-111 (113)
107 cd03001 PDI_a_P5 PDIa family, 99.2 9.8E-11 2.1E-15 81.4 9.3 85 89-220 18-102 (103)
108 TIGR00411 redox_disulf_1 small 99.2 2.3E-10 4.9E-15 76.3 9.6 81 92-224 2-82 (82)
109 cd02995 PDI_a_PDI_a'_C PDIa fa 99.2 1.2E-10 2.6E-15 81.0 7.4 56 76-131 4-61 (104)
110 cd02955 SSP411 TRX domain, SSP 99.2 4.1E-10 8.8E-15 81.1 10.0 86 86-210 12-100 (124)
111 cd02957 Phd_like Phosducin (Ph 99.1 2E-10 4.4E-15 81.5 8.0 72 89-210 24-95 (113)
112 PTZ00102 disulphide isomerase; 99.1 1.8E-10 4E-15 101.4 8.4 105 74-224 359-465 (477)
113 cd02989 Phd_like_TxnDC9 Phosdu 99.1 4.5E-10 9.7E-15 79.8 8.7 74 88-210 21-94 (113)
114 cd02947 TRX_family TRX family; 99.1 1.4E-09 3E-14 73.3 9.3 83 89-220 10-92 (93)
115 cd02987 Phd_like_Phd Phosducin 99.1 1.1E-09 2.5E-14 83.6 9.3 72 89-210 83-154 (175)
116 TIGR00424 APS_reduc 5'-adenyly 99.0 1.2E-09 2.6E-14 94.7 9.8 92 88-223 370-462 (463)
117 cd02988 Phd_like_VIAF Phosduci 99.0 1.8E-09 3.8E-14 83.7 8.9 81 89-221 102-189 (192)
118 cd02952 TRP14_like Human TRX-r 99.0 1.1E-09 2.4E-14 78.1 7.1 44 88-132 20-70 (119)
119 PF00837 T4_deiodinase: Iodoth 99.0 5E-09 1.1E-13 82.2 9.9 145 59-223 69-236 (237)
120 PLN02309 5'-adenylylsulfate re 99.0 4.1E-09 8.9E-14 91.3 10.3 92 88-223 364-456 (457)
121 TIGR00412 redox_disulf_2 small 99.0 4.2E-09 9E-14 69.3 7.8 36 93-129 2-37 (76)
122 cd02992 PDI_a_QSOX PDIa family 99.0 4.3E-09 9.3E-14 74.8 8.3 43 89-131 19-63 (114)
123 TIGR01130 ER_PDI_fam protein d 99.0 2.2E-09 4.8E-14 93.9 8.0 90 88-224 17-109 (462)
124 cd02958 UAS UAS family; UAS is 98.9 1.8E-08 4E-13 71.6 11.2 95 85-224 13-111 (114)
125 cd02982 PDI_b'_family Protein 98.9 6.9E-09 1.5E-13 72.1 7.9 89 89-224 12-103 (103)
126 PTZ00102 disulphide isomerase; 98.9 6.3E-09 1.4E-13 91.7 8.3 89 88-224 48-138 (477)
127 KOG0908 Thioredoxin-like prote 98.8 1.8E-08 3.9E-13 79.0 8.6 90 84-223 16-105 (288)
128 PF13728 TraF: F plasmid trans 98.8 1.2E-08 2.6E-13 80.4 7.6 100 83-220 114-214 (215)
129 TIGR02739 TraF type-F conjugat 98.8 1.8E-08 4E-13 80.9 8.0 103 84-224 145-248 (256)
130 PTZ00062 glutaredoxin; Provisi 98.8 3E-08 6.5E-13 77.3 8.8 76 90-223 18-93 (204)
131 TIGR02187 GlrX_arch Glutaredox 98.8 3.2E-08 7E-13 78.2 9.2 91 87-224 17-111 (215)
132 PRK13703 conjugal pilus assemb 98.8 3.2E-08 6.9E-13 79.1 7.9 103 84-224 138-241 (248)
133 TIGR01130 ER_PDI_fam protein d 98.7 1.3E-07 2.9E-12 82.7 9.5 88 88-223 363-453 (462)
134 cd02960 AGR Anterior Gradient 98.6 1.9E-07 4.1E-12 67.4 8.1 77 87-211 21-100 (130)
135 TIGR02187 GlrX_arch Glutaredox 98.6 2.4E-07 5.2E-12 73.3 9.5 83 88-222 132-214 (215)
136 cd03026 AhpF_NTD_C TRX-GRX-lik 98.6 6.2E-07 1.4E-11 60.7 8.4 45 85-131 8-52 (89)
137 PHA02125 thioredoxin-like prot 98.5 4.9E-07 1.1E-11 59.2 7.5 22 93-114 2-23 (75)
138 cd02973 TRX_GRX_like Thioredox 98.5 1.1E-06 2.4E-11 56.0 8.1 38 92-131 2-39 (67)
139 PF09695 YtfJ_HI0045: Bacteria 98.5 1.1E-05 2.3E-10 59.6 14.0 143 64-223 2-157 (160)
140 smart00594 UAS UAS domain. 98.5 1.6E-06 3.4E-11 62.4 9.3 89 87-220 25-121 (122)
141 COG0678 AHP1 Peroxiredoxin [Po 98.5 2.4E-06 5.2E-11 62.1 9.7 132 63-209 3-147 (165)
142 PF14595 Thioredoxin_9: Thiore 98.4 1.5E-07 3.2E-12 68.3 2.9 81 85-210 37-117 (129)
143 KOG0190 Protein disulfide isom 98.4 1.2E-06 2.6E-11 76.1 7.3 88 88-222 41-130 (493)
144 PF13899 Thioredoxin_7: Thiore 98.3 1.5E-06 3.3E-11 57.8 6.1 43 88-131 16-61 (82)
145 COG4232 Thiol:disulfide interc 98.3 1.6E-06 3.4E-11 76.2 6.7 95 87-223 472-567 (569)
146 COG0526 TrxA Thiol-disulfide i 98.3 1.2E-06 2.6E-11 61.0 5.0 49 82-131 25-73 (127)
147 cd01659 TRX_superfamily Thiore 98.2 8.9E-06 1.9E-10 50.0 6.6 38 93-132 1-38 (69)
148 PF04592 SelP_N: Selenoprotein 98.2 2.9E-05 6.3E-10 60.9 10.6 117 67-209 8-128 (238)
149 PF05176 ATP-synt_10: ATP10 pr 98.1 4.9E-05 1.1E-09 61.3 10.6 133 64-221 96-247 (252)
150 cd03007 PDI_a_ERp29_N PDIa fam 98.1 4.2E-05 9.1E-10 54.2 8.9 43 88-132 17-61 (116)
151 TIGR02196 GlrX_YruB Glutaredox 98.0 5.7E-05 1.2E-09 48.5 8.3 33 93-132 2-34 (74)
152 KOG0191 Thioredoxin/protein di 98.0 4.1E-05 8.9E-10 65.8 9.2 43 88-131 46-88 (383)
153 KOG0541 Alkyl hydroperoxide re 98.0 0.00014 3.1E-09 53.3 10.5 136 62-210 8-154 (171)
154 cd02991 UAS_ETEA UAS family, E 97.9 9.6E-05 2.1E-09 52.6 8.9 92 86-225 14-114 (116)
155 KOG0190 Protein disulfide isom 97.9 4.8E-05 1E-09 66.3 7.5 43 88-130 383-426 (493)
156 PRK11509 hydrogenase-1 operon 97.9 0.0002 4.2E-09 51.9 9.5 87 91-224 36-124 (132)
157 COG2143 Thioredoxin-related pr 97.8 0.00041 8.9E-09 51.0 9.8 103 87-221 40-146 (182)
158 KOG0912 Thiol-disulfide isomer 97.7 0.00012 2.5E-09 59.6 6.9 91 89-224 13-106 (375)
159 PF05988 DUF899: Bacterial pro 97.6 0.0018 3.9E-08 50.3 11.3 87 66-162 43-137 (211)
160 PF13192 Thioredoxin_3: Thiore 97.5 0.00042 9.2E-09 45.3 6.3 30 97-127 6-35 (76)
161 PRK11657 dsbG disulfide isomer 97.4 0.00053 1.2E-08 55.5 7.0 126 88-221 116-249 (251)
162 TIGR02180 GRX_euk Glutaredoxin 97.4 0.00044 9.5E-09 45.7 5.1 46 93-148 1-46 (84)
163 PF03190 Thioredox_DsbH: Prote 97.3 0.0024 5.3E-08 47.9 9.2 87 83-208 31-120 (163)
164 PRK10877 protein disulfide iso 97.3 0.0045 9.7E-08 49.5 10.9 38 88-129 106-143 (232)
165 KOG1731 FAD-dependent sulfhydr 97.2 0.00028 6E-09 62.0 3.4 42 90-131 58-101 (606)
166 PF06110 DUF953: Eukaryotic pr 97.2 0.0013 2.8E-08 46.8 5.8 43 88-131 18-67 (119)
167 PF13778 DUF4174: Domain of un 97.1 0.0084 1.8E-07 42.7 9.7 107 84-223 3-111 (118)
168 PF13911 AhpC-TSA_2: AhpC/TSA 97.1 0.0067 1.4E-07 42.8 9.0 84 111-209 2-113 (115)
169 KOG0191 Thioredoxin/protein di 97.1 0.0026 5.6E-08 54.7 7.8 42 89-130 162-204 (383)
170 KOG4277 Uncharacterized conser 96.9 0.0016 3.5E-08 53.0 4.9 35 90-124 44-78 (468)
171 cd03020 DsbA_DsbC_DsbG DsbA fa 96.9 0.014 3E-07 45.4 9.9 26 88-113 76-101 (197)
172 TIGR02200 GlrX_actino Glutared 96.9 0.0038 8.1E-08 40.3 5.6 32 93-131 2-33 (77)
173 cd03019 DsbA_DsbA DsbA family, 96.8 0.0056 1.2E-07 46.4 6.8 42 88-130 14-55 (178)
174 PRK11200 grxA glutaredoxin 1; 96.2 0.016 3.5E-07 38.5 5.6 37 93-131 3-39 (85)
175 KOG3425 Uncharacterized conser 96.1 0.01 2.2E-07 41.7 4.2 43 88-131 24-74 (128)
176 COG3054 Predicted transcriptio 96.1 0.014 2.9E-07 42.8 4.7 146 59-221 19-177 (184)
177 cd03023 DsbA_Com1_like DsbA fa 96.0 0.011 2.4E-07 43.4 4.5 42 88-129 4-45 (154)
178 COG4312 Uncharacterized protei 95.8 0.055 1.2E-06 42.3 7.3 83 71-163 54-144 (247)
179 PF02114 Phosducin: Phosducin; 95.6 0.091 2E-06 42.9 8.5 42 88-131 145-186 (265)
180 KOG4498 Uncharacterized conser 95.6 0.21 4.5E-06 38.2 9.5 55 75-129 35-91 (197)
181 TIGR03143 AhpF_homolog putativ 95.6 0.095 2.1E-06 47.4 9.3 39 89-129 476-514 (555)
182 cd02976 NrdH NrdH-redoxin (Nrd 95.5 0.07 1.5E-06 33.6 6.0 32 93-131 2-33 (73)
183 cd03419 GRX_GRXh_1_2_like Glut 95.3 0.05 1.1E-06 35.5 5.0 34 93-131 2-35 (82)
184 KOG0911 Glutaredoxin-related p 94.9 0.027 5.9E-07 44.1 3.1 42 88-131 16-57 (227)
185 PF13462 Thioredoxin_4: Thiore 94.7 0.081 1.8E-06 39.2 5.4 47 84-131 7-55 (162)
186 cd02972 DsbA_family DsbA famil 94.7 0.062 1.3E-06 35.7 4.3 38 93-131 1-38 (98)
187 PF00462 Glutaredoxin: Glutare 94.7 0.12 2.6E-06 31.6 5.2 32 93-131 1-32 (60)
188 PF11009 DUF2847: Protein of u 94.6 0.2 4.3E-06 34.8 6.5 75 88-206 18-93 (105)
189 cd03418 GRX_GRXb_1_3_like Glut 94.5 0.21 4.5E-06 31.9 6.2 33 93-132 2-34 (75)
190 TIGR02183 GRXA Glutaredoxin, G 94.3 0.14 3E-06 34.1 5.2 37 93-131 2-38 (86)
191 cd02983 P5_C P5 family, C-term 94.3 0.39 8.4E-06 34.8 7.8 91 90-225 21-116 (130)
192 cd02066 GRX_family Glutaredoxi 94.0 0.21 4.5E-06 31.1 5.4 32 93-131 2-33 (72)
193 TIGR02181 GRX_bact Glutaredoxi 93.9 0.19 4.2E-06 32.6 5.2 20 94-113 2-21 (79)
194 KOG0914 Thioredoxin-like prote 93.7 0.083 1.8E-06 41.3 3.5 44 88-131 143-186 (265)
195 PLN03098 LPA1 LOW PSII ACCUMUL 93.6 0.51 1.1E-05 41.2 8.5 66 66-132 273-338 (453)
196 PHA03050 glutaredoxin; Provisi 93.5 0.12 2.7E-06 36.1 3.9 23 93-115 15-37 (108)
197 cd03027 GRX_DEP Glutaredoxin ( 93.3 0.52 1.1E-05 30.0 6.4 31 94-131 4-34 (73)
198 PRK15317 alkyl hydroperoxide r 93.2 0.72 1.6E-05 41.4 9.3 65 62-128 79-153 (517)
199 TIGR02190 GlrX-dom Glutaredoxi 92.8 0.38 8.2E-06 31.3 5.3 35 90-131 7-41 (79)
200 PRK10954 periplasmic protein d 92.5 0.19 4.2E-06 39.3 4.2 43 88-131 36-81 (207)
201 KOG0913 Thiol-disulfide isomer 92.4 0.11 2.4E-06 41.0 2.6 40 88-128 39-78 (248)
202 PRK10329 glutaredoxin-like pro 92.3 0.59 1.3E-05 30.8 5.6 32 93-131 3-34 (81)
203 TIGR03143 AhpF_homolog putativ 92.2 0.92 2E-05 41.1 8.7 37 187-225 416-455 (555)
204 TIGR03140 AhpF alkyl hydropero 91.2 1.7 3.6E-05 39.0 9.1 65 62-128 80-154 (515)
205 TIGR02194 GlrX_NrdH Glutaredox 90.9 0.72 1.6E-05 29.3 4.9 31 94-131 2-32 (72)
206 TIGR02189 GlrX-like_plant Glut 90.7 0.72 1.6E-05 31.6 5.0 21 93-113 10-30 (99)
207 PF13848 Thioredoxin_6: Thiore 90.4 1.9 4.1E-05 32.4 7.7 42 89-131 94-136 (184)
208 KOG2507 Ubiquitin regulatory p 90.3 1.9 4.1E-05 37.2 8.0 38 187-224 74-111 (506)
209 TIGR00365 monothiol glutaredox 90.1 2 4.3E-05 29.3 6.7 36 89-131 11-50 (97)
210 cd03029 GRX_hybridPRX5 Glutare 90.0 1.1 2.4E-05 28.3 5.2 32 93-131 3-34 (72)
211 PRK10638 glutaredoxin 3; Provi 88.8 2.1 4.6E-05 28.0 6.0 31 94-131 5-35 (83)
212 cd03028 GRX_PICOT_like Glutare 88.6 2.5 5.3E-05 28.2 6.3 27 88-114 6-36 (90)
213 COG0695 GrxC Glutaredoxin and 88.5 1.5 3.1E-05 28.8 4.9 31 94-131 4-34 (80)
214 COG1331 Highly conserved prote 88.3 5.4 0.00012 36.7 9.8 23 87-109 41-63 (667)
215 COG4545 Glutaredoxin-related p 88.2 1.7 3.6E-05 28.1 4.7 42 94-149 5-46 (85)
216 KOG3414 Component of the U4/U6 87.7 2.2 4.7E-05 30.5 5.6 42 88-130 22-63 (142)
217 KOG4614 Inner membrane protein 86.9 1.1 2.4E-05 35.5 4.2 29 193-221 250-278 (287)
218 KOG1672 ATP binding protein [P 86.4 3.9 8.6E-05 31.6 6.8 74 88-210 83-156 (211)
219 COG1651 DsbG Protein-disulfide 86.3 2 4.4E-05 34.3 5.6 53 74-126 69-121 (244)
220 cd03073 PDI_b'_ERp72_ERp57 PDI 86.1 5.1 0.00011 28.0 6.9 32 191-223 78-110 (111)
221 TIGR01617 arsC_related transcr 85.2 2 4.3E-05 30.3 4.5 50 95-156 3-52 (117)
222 PRK10824 glutaredoxin-4; Provi 85.1 3.6 7.7E-05 29.1 5.7 26 89-114 14-43 (115)
223 cd02979 PHOX_C FAD-dependent P 84.4 15 0.00033 27.6 10.6 51 66-118 1-55 (167)
224 cd03072 PDI_b'_ERp44 PDIb' fam 82.9 12 0.00025 26.1 7.6 34 191-224 74-108 (111)
225 cd02977 ArsC_family Arsenate R 82.4 3.3 7.1E-05 28.4 4.6 48 94-153 2-49 (105)
226 cd03036 ArsC_like Arsenate Red 82.1 3.1 6.8E-05 29.0 4.5 48 95-154 3-50 (111)
227 cd03035 ArsC_Yffb Arsenate Red 79.9 3.9 8.4E-05 28.3 4.3 48 94-153 2-49 (105)
228 cd03032 ArsC_Spx Arsenate Redu 79.6 5.8 0.00013 27.8 5.2 49 95-155 4-52 (115)
229 KOG1752 Glutaredoxin and relat 78.9 7.1 0.00015 27.1 5.2 47 89-148 13-59 (104)
230 PRK01655 spxA transcriptional 78.1 4.2 9.2E-05 29.3 4.1 50 94-155 3-52 (131)
231 COG1651 DsbG Protein-disulfide 76.0 0.54 1.2E-05 37.6 -1.2 32 187-224 212-243 (244)
232 COG2179 Predicted hydrolase of 75.7 10 0.00022 28.7 5.6 61 90-159 29-90 (175)
233 PHA03075 glutaredoxin-like pro 75.3 2.6 5.7E-05 29.6 2.2 38 90-127 2-39 (123)
234 PRK12759 bifunctional gluaredo 75.3 7.3 0.00016 34.0 5.6 32 93-131 4-35 (410)
235 TIGR03759 conj_TIGR03759 integ 74.7 15 0.00033 28.5 6.4 57 91-160 110-166 (200)
236 TIGR00995 3a0901s06TIC22 chlor 74.6 29 0.00062 28.5 8.3 63 64-131 77-142 (270)
237 PF02966 DIM1: Mitosis protein 73.8 11 0.00023 27.3 5.1 43 88-131 19-61 (133)
238 PRK12559 transcriptional regul 73.4 9 0.0002 27.7 4.8 46 94-151 3-48 (131)
239 PF05768 DUF836: Glutaredoxin- 72.2 4.5 9.7E-05 26.4 2.8 52 93-159 2-53 (81)
240 PF06053 DUF929: Domain of unk 72.0 5.8 0.00012 32.1 3.8 34 88-121 57-90 (249)
241 KOG2961 Predicted hydrolase (H 71.6 38 0.00083 25.3 7.6 104 67-177 20-131 (190)
242 PF07976 Phe_hydrox_dim: Pheno 69.9 26 0.00057 26.4 6.9 73 58-130 25-115 (169)
243 PTZ00062 glutaredoxin; Provisi 69.2 20 0.00044 28.0 6.2 37 88-131 111-151 (204)
244 PF13462 Thioredoxin_4: Thiore 68.0 7.6 0.00016 28.4 3.6 30 187-222 133-162 (162)
245 PRK13344 spxA transcriptional 66.3 17 0.00037 26.2 5.0 51 95-157 4-54 (132)
246 PF06764 DUF1223: Protein of u 65.9 16 0.00034 28.6 5.0 40 93-135 1-41 (202)
247 PRK10026 arsenate reductase; P 63.6 56 0.0012 23.9 7.8 48 95-154 6-53 (141)
248 PRK08294 phenol 2-monooxygenas 62.8 1.2E+02 0.0025 28.2 10.9 54 61-114 461-519 (634)
249 PF07449 HyaE: Hydrogenase-1 e 61.3 35 0.00077 23.7 5.6 27 187-214 79-105 (107)
250 PF01323 DSBA: DSBA-like thior 58.1 14 0.00031 27.8 3.6 39 93-131 2-40 (193)
251 PF05673 DUF815: Protein of un 56.4 42 0.0009 27.2 5.9 95 91-202 54-149 (249)
252 cd03025 DsbA_FrnE_like DsbA fa 55.6 15 0.00033 27.8 3.3 27 93-119 3-29 (193)
253 PF01323 DSBA: DSBA-like thior 53.1 18 0.0004 27.3 3.4 30 187-221 164-193 (193)
254 PF11211 DUF2997: Protein of u 52.2 31 0.00068 20.2 3.5 29 195-223 3-33 (48)
255 PF07411 DUF1508: Domain of un 50.3 37 0.00079 19.9 3.6 32 192-223 6-37 (49)
256 PF06953 ArsD: Arsenical resis 49.8 94 0.002 22.2 8.8 35 98-132 10-50 (123)
257 COG2607 Predicted ATPase (AAA+ 46.5 57 0.0012 26.6 5.2 81 109-201 100-181 (287)
258 TIGR03765 ICE_PFL_4695 integra 45.9 1E+02 0.0022 21.4 5.7 66 108-201 37-102 (105)
259 COG2761 FrnE Predicted dithiol 45.7 32 0.00069 27.4 3.7 33 187-224 181-213 (225)
260 KOG3170 Conserved phosducin-li 45.2 32 0.00069 26.9 3.5 40 88-129 110-149 (240)
261 COG2761 FrnE Predicted dithiol 43.2 83 0.0018 25.1 5.7 38 90-127 4-43 (225)
262 PF11072 DUF2859: Protein of u 43.2 1E+02 0.0022 22.7 5.7 66 108-201 75-140 (142)
263 cd07202 cPLA2_Grp-IVC Group IV 42.4 38 0.00083 29.7 4.0 39 120-160 304-342 (430)
264 COG0552 FtsY Signal recognitio 41.9 2.1E+02 0.0046 24.4 8.1 98 88-203 136-233 (340)
265 PF13743 Thioredoxin_5: Thiore 41.7 29 0.00063 26.3 2.9 33 95-128 2-34 (176)
266 PF01106 NifU: NifU-like domai 41.4 42 0.00091 21.1 3.1 34 77-111 14-47 (68)
267 TIGR00014 arsC arsenate reduct 41.3 67 0.0015 22.4 4.5 48 95-154 3-50 (114)
268 PF08821 CGGC: CGGC domain; I 41.1 84 0.0018 21.8 4.9 73 78-154 24-100 (107)
269 KOG1364 Predicted ubiquitin re 39.5 38 0.00083 28.7 3.4 38 187-224 151-189 (356)
270 PF10790 DUF2604: Protein of U 38.2 26 0.00056 21.9 1.7 23 64-86 31-53 (76)
271 KOG1014 17 beta-hydroxysteroid 38.1 1.1E+02 0.0023 25.8 5.7 95 83-203 43-137 (312)
272 PF10673 DUF2487: Protein of u 37.9 81 0.0018 23.2 4.6 46 86-131 47-94 (142)
273 PF08806 Sep15_SelM: Sep15/Sel 37.6 44 0.00094 21.8 2.8 33 191-223 42-75 (78)
274 PRK14324 glmM phosphoglucosami 37.5 1.7E+02 0.0037 25.8 7.4 43 122-167 199-246 (446)
275 cd03024 DsbA_FrnE DsbA family, 36.6 1.7E+02 0.0037 22.1 6.6 24 96-119 4-27 (201)
276 cd03060 GST_N_Omega_like GST_N 36.2 33 0.00072 21.2 2.1 30 96-130 4-33 (71)
277 PRK10887 glmM phosphoglucosami 35.8 2.5E+02 0.0054 24.7 8.2 20 139-159 217-236 (443)
278 PF14307 Glyco_tran_WbsX: Glyc 35.7 85 0.0018 26.6 5.1 44 88-131 157-200 (345)
279 PF02670 DXP_reductoisom: 1-de 34.6 77 0.0017 22.9 4.0 38 113-159 16-53 (129)
280 cd03033 ArsC_15kD Arsenate Red 34.6 1.1E+02 0.0023 21.4 4.6 47 95-153 4-50 (113)
281 PF04134 DUF393: Protein of un 34.1 24 0.00051 24.3 1.3 31 96-129 2-32 (114)
282 PRK14316 glmM phosphoglucosami 34.0 2.7E+02 0.0058 24.5 8.1 20 139-159 219-238 (448)
283 PRK10853 putative reductase; P 33.8 1E+02 0.0022 21.7 4.5 48 95-154 4-51 (118)
284 PRK14323 glmM phosphoglucosami 32.7 2.6E+02 0.0057 24.5 7.8 20 139-159 219-238 (440)
285 cd05802 GlmM GlmM is a bacteri 32.6 2.8E+02 0.0061 24.2 8.0 37 122-159 193-234 (434)
286 PF04278 Tic22: Tic22-like fam 32.5 2.8E+02 0.0061 22.8 11.3 59 67-131 73-136 (274)
287 PLN02640 glucose-6-phosphate 1 32.3 2.4E+02 0.0052 26.0 7.5 69 64-132 60-131 (573)
288 PF10589 NADH_4Fe-4S: NADH-ubi 31.9 8.2 0.00018 22.3 -1.2 20 100-119 18-37 (46)
289 PF02563 Poly_export: Polysacc 31.8 52 0.0011 21.3 2.6 31 194-224 32-67 (82)
290 PRK14315 glmM phosphoglucosami 31.2 3.3E+02 0.0071 24.0 8.2 10 195-204 250-259 (448)
291 TIGR01753 flav_short flavodoxi 30.7 1.7E+02 0.0037 20.5 5.4 14 87-100 78-91 (140)
292 cd03034 ArsC_ArsC Arsenate Red 30.5 1.1E+02 0.0025 21.1 4.3 48 95-154 3-50 (112)
293 cd02981 PDI_b_family Protein D 30.2 1.6E+02 0.0034 19.1 8.6 34 89-126 17-50 (97)
294 COG3019 Predicted metal-bindin 30.0 1.9E+02 0.0041 21.3 5.3 47 92-157 27-73 (149)
295 PF04723 GRDA: Glycine reducta 30.0 55 0.0012 23.9 2.5 37 94-130 33-76 (150)
296 cd03031 GRX_GRX_like Glutaredo 29.1 1.8E+02 0.004 21.4 5.3 25 100-131 15-39 (147)
297 PF12017 Tnp_P_element: Transp 28.4 2.4E+02 0.0053 22.6 6.2 25 108-132 195-219 (236)
298 cd07244 FosA FosA, a Fosfomyci 28.4 98 0.0021 21.1 3.7 17 193-209 94-110 (121)
299 PF03544 TonB_C: Gram-negative 27.5 32 0.0007 21.7 1.0 14 193-206 20-33 (79)
300 PRK13265 glycine/sarcosine/bet 26.9 69 0.0015 23.4 2.6 36 94-129 34-76 (154)
301 PF06491 Disulph_isomer: Disul 26.8 1E+02 0.0022 22.4 3.4 34 190-224 95-132 (136)
302 cd03084 phosphohexomutase The 26.5 3.1E+02 0.0068 23.1 7.1 20 109-131 126-145 (355)
303 PF11760 CbiG_N: Cobalamin syn 26.3 1.6E+02 0.0035 19.5 4.1 34 191-224 38-73 (84)
304 PF14062 DUF4253: Domain of un 26.1 1.2E+02 0.0027 21.1 3.7 51 101-154 26-79 (111)
305 cd08344 MhqB_like_N N-terminal 26.0 90 0.0019 21.0 3.1 18 194-211 94-111 (112)
306 cd05803 PGM_like4 This PGM-lik 25.3 4.5E+02 0.0098 23.1 8.0 10 195-204 248-257 (445)
307 PRK14314 glmM phosphoglucosami 25.0 3.8E+02 0.0081 23.6 7.5 9 195-203 251-259 (450)
308 PF07315 DUF1462: Protein of u 24.7 1.4E+02 0.0031 20.1 3.6 30 114-148 29-58 (93)
309 PRK14317 glmM phosphoglucosami 24.6 3E+02 0.0066 24.3 6.8 10 195-204 262-271 (465)
310 COG1370 Prefoldin, molecular c 24.5 1.8E+02 0.004 21.6 4.4 25 193-217 116-140 (155)
311 TIGR02171 Fb_sc_TIGR02171 Fibr 24.5 47 0.001 32.0 1.8 41 91-131 786-830 (912)
312 PRK09542 manB phosphomannomuta 24.4 2.7E+02 0.0058 24.5 6.4 9 195-203 241-249 (445)
313 cd06844 STAS Sulphate Transpor 24.3 2.2E+02 0.0048 18.8 6.3 40 89-130 39-79 (100)
314 TIGR01616 nitro_assoc nitrogen 24.3 2.2E+02 0.0047 20.3 4.8 46 93-149 3-48 (126)
315 COG1393 ArsC Arsenate reductas 24.3 1.1E+02 0.0023 21.7 3.2 52 94-157 4-55 (117)
316 PF00448 SRP54: SRP54-type pro 24.2 90 0.002 24.1 3.1 43 110-156 17-59 (196)
317 TIGR01455 glmM phosphoglucosam 23.5 5.1E+02 0.011 22.7 8.1 10 195-204 246-255 (443)
318 cd07201 cPLA2_Grp-IVB-IVD-IVE- 23.4 1E+02 0.0022 28.0 3.5 53 119-173 392-444 (541)
319 KOG2603 Oligosaccharyltransfer 23.3 4.6E+02 0.01 22.2 8.9 37 85-121 56-96 (331)
320 PF12690 BsuPI: Intracellular 23.2 82 0.0018 20.6 2.3 16 195-210 29-44 (82)
321 cd03051 GST_N_GTT2_like GST_N 23.0 78 0.0017 19.2 2.1 19 96-114 4-22 (74)
322 PRK15126 thiamin pyrimidine py 22.9 4E+02 0.0086 21.3 11.2 39 112-159 25-63 (272)
323 PF13103 TonB_2: TonB C termin 22.8 1.3E+02 0.0029 19.2 3.3 14 193-206 30-43 (85)
324 PRK14318 glmM phosphoglucosami 22.6 5.3E+02 0.012 22.7 8.1 10 195-204 249-258 (448)
325 PF14903 WG_beta_rep: WG conta 22.4 60 0.0013 16.7 1.3 11 196-206 3-13 (35)
326 TIGR01352 tonB_Cterm TonB fami 22.2 1.2E+02 0.0027 18.5 3.0 14 193-206 14-27 (74)
327 cd03041 GST_N_2GST_N GST_N fam 21.9 72 0.0016 20.1 1.8 18 96-113 5-22 (77)
328 cd03040 GST_N_mPGES2 GST_N fam 21.9 72 0.0016 19.9 1.8 18 96-113 5-22 (77)
329 PF02743 Cache_1: Cache domain 21.8 48 0.001 21.1 1.0 14 193-206 55-68 (81)
330 PF03960 ArsC: ArsC family; I 21.8 1.9E+02 0.0041 19.7 4.1 50 97-158 2-51 (110)
331 PRK11867 2-oxoglutarate ferred 21.5 1.1E+02 0.0024 25.3 3.3 22 96-118 15-36 (286)
332 cd03089 PMM_PGM The phosphoman 21.3 4E+02 0.0086 23.4 6.9 10 122-131 187-196 (443)
333 PF02941 FeThRed_A: Ferredoxin 21.2 51 0.0011 20.8 0.9 31 67-97 19-56 (67)
334 PRK14321 glmM phosphoglucosami 21.1 5E+02 0.011 22.9 7.5 10 195-204 240-249 (449)
335 PRK05778 2-oxoglutarate ferred 21.0 1.1E+02 0.0023 25.6 3.1 22 97-119 17-38 (301)
336 PF03259 Robl_LC7: Roadblock/L 21.0 84 0.0018 20.2 2.1 15 192-206 16-30 (91)
337 PF05228 CHASE4: CHASE4 domain 20.5 1.1E+02 0.0023 22.2 2.8 13 193-205 52-64 (161)
338 PF14427 Pput2613-deam: Pput_2 20.5 1.5E+02 0.0032 20.8 3.1 34 82-118 59-92 (118)
339 cd00570 GST_N_family Glutathio 20.1 89 0.0019 18.2 2.0 30 96-130 4-33 (71)
340 PRK12359 flavodoxin FldB; Prov 20.1 3.6E+02 0.0079 20.4 5.6 12 212-223 153-164 (172)
No 1
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=100.00 E-value=4.1e-34 Score=226.36 Aligned_cols=163 Identities=69% Similarity=1.172 Sum_probs=143.1
Q ss_pred cCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHH
Q 027311 63 SQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE 142 (225)
Q Consensus 63 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~ 142 (225)
...|+.+|+|+++|.+|+.+++++++||++||+||++||++|..++|.|++++++|+++|++||+|+.|+++..++++.+
T Consensus 73 ~~~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ 152 (236)
T PLN02399 73 AATEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP 152 (236)
T ss_pred hhcCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHH
Confidence 45889999999999999999999999999999999999999999999999999999999999999999877667777889
Q ss_pred HHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHh
Q 027311 143 QIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLEC 222 (225)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ 222 (225)
++++|+.++++++||++.+.|..+....+.|+++....++..|..+.+.|++||||++|+|++++.|..+++++++.|++
T Consensus 153 ei~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~ 232 (236)
T PLN02399 153 EIKQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQK 232 (236)
T ss_pred HHHHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHH
Confidence 99999866889999998666666766777787764443443343577889999999999999999999999999999999
Q ss_pred hhC
Q 027311 223 LCC 225 (225)
Q Consensus 223 ll~ 225 (225)
+|+
T Consensus 233 lL~ 235 (236)
T PLN02399 233 LLA 235 (236)
T ss_pred Hhc
Confidence 985
No 2
>PLN02412 probable glutathione peroxidase
Probab=100.00 E-value=7.4e-34 Score=216.01 Aligned_cols=161 Identities=72% Similarity=1.159 Sum_probs=142.1
Q ss_pred CCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHH
Q 027311 65 SKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI 144 (225)
Q Consensus 65 ~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~ 144 (225)
..+.+|+|++++.+|+.+++++++||++||+||++||++|+.++|.|++++++|+++|++|++|+.|.+...++++.+++
T Consensus 5 ~~~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~ 84 (167)
T PLN02412 5 SPKSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEI 84 (167)
T ss_pred cCCCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHH
Confidence 34789999999999999999999999999999999999999999999999999999999999999987665666678888
Q ss_pred HHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311 145 QEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC 224 (225)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll 224 (225)
+++..++++++||++.+.|.++......|+++....++..+.++.+.|++||||++|+|++++.|..++++++..|+++|
T Consensus 85 ~~~~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l 164 (167)
T PLN02412 85 QQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLL 164 (167)
T ss_pred HHHHHHccCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 77765889999999976677776777788877665555555568889999999999999999999999999999999988
Q ss_pred C
Q 027311 225 C 225 (225)
Q Consensus 225 ~ 225 (225)
+
T Consensus 165 ~ 165 (167)
T PLN02412 165 G 165 (167)
T ss_pred h
Confidence 5
No 3
>PTZ00056 glutathione peroxidase; Provisional
Probab=100.00 E-value=3.6e-33 Score=217.52 Aligned_cols=161 Identities=39% Similarity=0.695 Sum_probs=138.6
Q ss_pred CCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHH
Q 027311 64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQ 143 (225)
Q Consensus 64 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~ 143 (225)
..+..+|+|+++|.+|+.+++++++||++||+||++||++|+.++|.|++++++|+++|++||+|++|++..++.++.++
T Consensus 14 ~~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~ 93 (199)
T PTZ00056 14 ELRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKD 93 (199)
T ss_pred hcCCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHH
Confidence 67789999999999999999999999999999999999999999999999999999999999999998877777788999
Q ss_pred HHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCC---C--CccccceeEEEECCCCcEEEEcCCCCChhhHHH
Q 027311 144 IQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLF---G--DSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEV 218 (225)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~---~--~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~ 218 (225)
+++|+ ++++++||++.+.+.++.....+++++.......+ + .++.+.|++||||++|+|++++.|..+++++++
T Consensus 94 ~~~f~-~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~ 172 (199)
T PTZ00056 94 IRKFN-DKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEK 172 (199)
T ss_pred HHHHH-HHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHH
Confidence 99999 78999999997776777777777766653222111 1 134555689999999999999999999999999
Q ss_pred HHHhhhC
Q 027311 219 VLECLCC 225 (225)
Q Consensus 219 ~l~~ll~ 225 (225)
.|+++|+
T Consensus 173 ~I~~ll~ 179 (199)
T PTZ00056 173 KIAELLG 179 (199)
T ss_pred HHHHHHH
Confidence 9999874
No 4
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.98 E-value=1.1e-31 Score=201.29 Aligned_cols=150 Identities=60% Similarity=1.063 Sum_probs=121.3
Q ss_pred ecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHH
Q 027311 69 VHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFA 148 (225)
Q Consensus 69 ~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~ 148 (225)
+|+|+++|++|+.+++++++||++||+||++||| |+.++|.|++++++|+++|+++++|+.|.++..++++.+++++|+
T Consensus 2 ~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~ 80 (152)
T cd00340 2 IYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFC 80 (152)
T ss_pred cceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHH
Confidence 6899999999999999999999999999999999 999999999999999988999999998865555566789999999
Q ss_pred HhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHH
Q 027311 149 CTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVV 219 (225)
Q Consensus 149 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~ 219 (225)
.++++++||++.+.|..+......|+.+....++..++.+.+.|++||||++|+|++++.|..+++++++.
T Consensus 81 ~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 81 ETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred HHhcCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 44479999998655555554455565433322222122445556999999999999999999988877654
No 5
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.98 E-value=2.5e-31 Score=205.09 Aligned_cols=162 Identities=42% Similarity=0.733 Sum_probs=135.3
Q ss_pred CCCceecCeEEeCCCCCeecCCccCCCEE-EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHH
Q 027311 64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLL-LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE 142 (225)
Q Consensus 64 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~v-lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~ 142 (225)
..+..+|+|+++|.+|+.+++++++||++ |+.+|++|||+|+.++|.|++++++|+++|+.|++|++|.+...++++.+
T Consensus 15 ~~~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~ 94 (183)
T PTZ00256 15 PPTKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEP 94 (183)
T ss_pred CCCCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHH
Confidence 45678999999999999999999999964 55679999999999999999999999999999999998865555656778
Q ss_pred HHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCC--CCCccccce---eEEEECCCCcEEEEcCCCCChhhHH
Q 027311 143 QIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGL--FGDSIKWNF---SKFLVDKEGNVVERYAPTTSPLSIE 217 (225)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~P---~~~lid~~G~I~~~~~g~~~~~~l~ 217 (225)
++.+|+.++++++||++.+.|.++....++|+++....+.. ..+++.++| ++||||++|+|++++.|..++++++
T Consensus 95 ~~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~ 174 (183)
T PTZ00256 95 EIKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMI 174 (183)
T ss_pred HHHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHH
Confidence 89999866889999999777777777677887766543211 112566788 4699999999999999999999999
Q ss_pred HHHHhhhC
Q 027311 218 VVLECLCC 225 (225)
Q Consensus 218 ~~l~~ll~ 225 (225)
+.|+++|+
T Consensus 175 ~~I~~ll~ 182 (183)
T PTZ00256 175 QDIEKLLN 182 (183)
T ss_pred HHHHHHhc
Confidence 99999885
No 6
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.97 E-value=6.5e-31 Score=201.23 Aligned_cols=157 Identities=39% Similarity=0.784 Sum_probs=142.0
Q ss_pred ceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHH
Q 027311 67 TSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQE 146 (225)
Q Consensus 67 ~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~ 146 (225)
..+++|++.+++|+.++|++++||++||+||||||+.|. +++.|++++++|+++|++|++|+.++++.+++++.+++++
T Consensus 3 ~~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~ 81 (183)
T PRK10606 3 DSILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKT 81 (183)
T ss_pred CCccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHH
Confidence 368999999999999999999999999999999999995 7999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCcceeeeecCCCCCchhhhhhccccCCC--------------------CCCCccccceeEEEECCCCcEEEE
Q 027311 147 FACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGG--------------------LFGDSIKWNFSKFLVDKEGNVVER 206 (225)
Q Consensus 147 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--------------------~~~~~v~~~P~~~lid~~G~I~~~ 206 (225)
|+.++++++||++.+.|..|...+.+|++++...+. ..+..|.|..+.||||++|+++.+
T Consensus 82 f~~~~~g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r 161 (183)
T PRK10606 82 YCRTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQR 161 (183)
T ss_pred HHHHccCCCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEE
Confidence 995579999999999999999999999999865431 011268899999999999999999
Q ss_pred cCCCCChhh--HHHHHHhhh
Q 027311 207 YAPTTSPLS--IEVVLECLC 224 (225)
Q Consensus 207 ~~g~~~~~~--l~~~l~~ll 224 (225)
+.+...+.+ +++.|+++|
T Consensus 162 ~~~~~~p~~~~i~~~i~~~l 181 (183)
T PRK10606 162 FSPDMTPEDPIVMESIKLAL 181 (183)
T ss_pred ECCCCCCCHHHHHHHHHHHh
Confidence 999988877 999999887
No 7
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.97 E-value=1.8e-30 Score=195.00 Aligned_cols=148 Identities=39% Similarity=0.714 Sum_probs=124.2
Q ss_pred ecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHH
Q 027311 69 VHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFA 148 (225)
Q Consensus 69 ~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~ 148 (225)
+.+|++.|++|+.+++++++||++||+||++|||+|..++|.|++++++|+++|+.|++|+.+.++..++++.+.+++|+
T Consensus 2 ~~~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~ 81 (153)
T TIGR02540 2 FYSFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFA 81 (153)
T ss_pred cccceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999998766666667889999999
Q ss_pred HhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCcccccee----EEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311 149 CTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFS----KFLVDKEGNVVERYAPTTSPLSIEVVLECLC 224 (225)
Q Consensus 149 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~----~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll 224 (225)
+++++++||++.+.+..+......|++... .....|+ +||||++|+|++++.|..+++++++.|++++
T Consensus 82 ~~~~~~~fp~~~d~~~~~~~~~~~~~~~~~--------~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 82 RRNYGVTFPMFSKIKILGSEAEPAFRFLVD--------SSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred HHhcCCCCCccceEecCCCCCCcHHHHHHh--------cCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 445899999987654444444444544321 1123566 9999999999999999999999999999875
No 8
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.4e-28 Score=175.96 Aligned_cols=158 Identities=58% Similarity=1.014 Sum_probs=149.3
Q ss_pred ceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHH
Q 027311 67 TSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQE 146 (225)
Q Consensus 67 ~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~ 146 (225)
..+.+|++++.+|++++|++++||++||.-.||.|+.-. +...|+.++++|+++|++|+++..+.+.+++|.+.+++++
T Consensus 3 ~~~yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~ 81 (162)
T COG0386 3 MSIYDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAK 81 (162)
T ss_pred cccccceeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHH
Confidence 356899999999999999999999999999999999877 8899999999999999999999999999999999999999
Q ss_pred HHHhhcCCCcceeeeecCCCCCchhhhhhccccCCC-CCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311 147 FACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGG-LFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC 225 (225)
Q Consensus 147 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~ 225 (225)
|+...|+.+||++..++..|.+.+.+|+++....++ ..+..|.|..+.||||++|+|+.|+.+...|++++..|+++|+
T Consensus 82 fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~ 161 (162)
T COG0386 82 FCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLA 161 (162)
T ss_pred HHHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhc
Confidence 999999999999999999999999999999987755 4556999999999999999999999999999999999999984
No 9
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.95 E-value=3.2e-28 Score=181.31 Aligned_cols=124 Identities=28% Similarity=0.498 Sum_probs=104.9
Q ss_pred CCCceecCeEEeC--CCCCeecCCccCCCEEEEEEccc-CCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCC
Q 027311 64 QSKTSVHDFSVKD--AKGQDVDLSIYKGKLLLIVNVAS-QCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD 140 (225)
Q Consensus 64 ~~g~~~p~f~l~~--~~G~~~~l~~~~gk~vlv~F~~t-wC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~ 140 (225)
++|+.+|+|++++ .+|+.+++++++||++||+||++ |||+|+.++|.+++++++|+++++.+++|+.+.
T Consensus 1 k~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~-------- 72 (146)
T PF08534_consen 1 KVGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDD-------- 72 (146)
T ss_dssp STTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESS--------
T ss_pred CCCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccC--------
Confidence 5899999999966 99999999999999999999999 999999999999999999999999999999883
Q ss_pred HHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccc---------cceeEEEECCCCcEEEEcCCCC
Q 027311 141 NEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIK---------WNFSKFLVDKEGNVVERYAPTT 211 (225)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~---------~~P~~~lid~~G~I~~~~~g~~ 211 (225)
...+.+|+ ++++.+|+++ .|.+ ....+.| ++. ++|+++|||++|+|++++.|..
T Consensus 73 ~~~~~~~~-~~~~~~~~~~--~D~~-~~~~~~~-------------~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~ 135 (146)
T PF08534_consen 73 DPPVREFL-KKYGINFPVL--SDPD-GALAKAL-------------GVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPD 135 (146)
T ss_dssp SHHHHHHH-HHTTTTSEEE--EETT-SHHHHHT-------------TCEEECCTTTTSSSSEEEEEETTSBEEEEEESSB
T ss_pred CHHHHHHH-HhhCCCceEE--echH-HHHHHHh-------------CCccccccccCCeecEEEEEECCCEEEEEEeCCC
Confidence 33488888 7789999998 4433 3333334 444 7999999999999999999977
Q ss_pred C
Q 027311 212 S 212 (225)
Q Consensus 212 ~ 212 (225)
+
T Consensus 136 ~ 136 (146)
T PF08534_consen 136 P 136 (146)
T ss_dssp T
T ss_pred C
Confidence 6
No 10
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.95 E-value=1.3e-27 Score=184.76 Aligned_cols=135 Identities=19% Similarity=0.225 Sum_probs=112.7
Q ss_pred cCCCceecCeEEeCCCC--CeecCCcc-CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311 63 SQSKTSVHDFSVKDAKG--QDVDLSIY-KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG 139 (225)
Q Consensus 63 ~~~g~~~p~f~l~~~~G--~~~~l~~~-~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~ 139 (225)
..+|+++|+|++.+++| +.++++++ +||+++|+||++||++|+.++|.++++++ ++++|++|+.|+
T Consensus 39 ~~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~~~vi~v~~~~------- 107 (185)
T PRK15412 39 ALIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----QGIRVVGMNYKD------- 107 (185)
T ss_pred hhcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----cCCEEEEEECCC-------
Confidence 36799999999999984 67777765 89999999999999999999999988864 469999999874
Q ss_pred CHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHH
Q 027311 140 DNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVV 219 (225)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~ 219 (225)
+.+++++|+ ++++.+|+.+. .|..+.. ...| ++.++|++|+||++|+|++++.|..+.+++++.
T Consensus 108 ~~~~~~~~~-~~~~~~~~~~~-~D~~~~~-~~~~-------------gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~ 171 (185)
T PRK15412 108 DRQKAISWL-KELGNPYALSL-FDGDGML-GLDL-------------GVYGAPETFLIDGNGIIRYRHAGDLNPRVWESE 171 (185)
T ss_pred CHHHHHHHH-HHcCCCCceEE-EcCCccH-HHhc-------------CCCcCCeEEEECCCceEEEEEecCCCHHHHHHH
Confidence 678888998 78899998531 3444332 2233 888899999999999999999999999999999
Q ss_pred HHhhh
Q 027311 220 LECLC 224 (225)
Q Consensus 220 l~~ll 224 (225)
|+.++
T Consensus 172 i~~~~ 176 (185)
T PRK15412 172 IKPLW 176 (185)
T ss_pred HHHHH
Confidence 98876
No 11
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.3e-27 Score=170.64 Aligned_cols=162 Identities=67% Similarity=1.110 Sum_probs=154.9
Q ss_pred CCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHH
Q 027311 64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQ 143 (225)
Q Consensus 64 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~ 143 (225)
.....+.+|+.+|.+|+.++|+.|+||++||.-.||.|+.-...-.+|++++++|+++|++|++...+.++.+||.+.++
T Consensus 9 ~~~~siydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~E 88 (171)
T KOG1651|consen 9 DEKGSIYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEE 88 (171)
T ss_pred hhhcceeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHH
Confidence 34567899999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhh
Q 027311 144 IQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL 223 (225)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~l 223 (225)
+..++..+++..||++..+|..|+..+.+|++++...++..|..|.|..+.||||++|.++.|+.+..++.+++..|++|
T Consensus 89 i~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~l 168 (171)
T KOG1651|consen 89 ILNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKL 168 (171)
T ss_pred HHHHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHH
Confidence 99999899999999999999999999999999999999888889999999999999999999999999999999999999
Q ss_pred hC
Q 027311 224 CC 225 (225)
Q Consensus 224 l~ 225 (225)
|+
T Consensus 169 L~ 170 (171)
T KOG1651|consen 169 LA 170 (171)
T ss_pred hc
Confidence 85
No 12
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.6e-26 Score=169.26 Aligned_cols=148 Identities=19% Similarity=0.332 Sum_probs=119.0
Q ss_pred ccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCC
Q 027311 62 ASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD 140 (225)
Q Consensus 62 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~ 140 (225)
.+.+|+++|+|++.+++|+.++|++++||+|||+|| ..++|.|..|+..+++.++++++.|.+|+|||.| +
T Consensus 3 ~l~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~D--------s 74 (157)
T COG1225 3 MLKVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPD--------S 74 (157)
T ss_pred cCCCCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCC--------C
Confidence 357999999999999999999999999999999998 8899999999999999999999999999999998 8
Q ss_pred HHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCC-ccccceeEEEECCCCcEEEEcCCCCCh---hhH
Q 027311 141 NEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGD-SIKWNFSKFLVDKEGNVVERYAPTTSP---LSI 216 (225)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~v~~~P~~~lid~~G~I~~~~~g~~~~---~~l 216 (225)
.+..++|+ ++++++|++++ |.++. ..+.|+....... +|. -.-..+++||||++|+|++.+...... +++
T Consensus 75 ~~~~~~F~-~k~~L~f~LLS--D~~~~-v~~~ygv~~~k~~--~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~v 148 (157)
T COG1225 75 PKSHKKFA-EKHGLTFPLLS--DEDGE-VAEAYGVWGEKKM--YGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEV 148 (157)
T ss_pred HHHHHHHH-HHhCCCceeeE--CCcHH-HHHHhCccccccc--CccccccccceEEEECCCCeEEEEecCCCCcccHHHH
Confidence 99999999 89999999995 44333 5566765543221 111 122357999999999999998544333 455
Q ss_pred HHHHHhh
Q 027311 217 EVVLECL 223 (225)
Q Consensus 217 ~~~l~~l 223 (225)
.+.|+++
T Consensus 149 l~~l~~l 155 (157)
T COG1225 149 LAALKKL 155 (157)
T ss_pred HHHHHHh
Confidence 5555554
No 13
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.94 E-value=1e-26 Score=168.18 Aligned_cols=123 Identities=25% Similarity=0.491 Sum_probs=103.8
Q ss_pred CCceecCeEEeCCCCCeecCCccCCCEEEEEEccc-CCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHH
Q 027311 65 SKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVAS-QCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQ 143 (225)
Q Consensus 65 ~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~t-wC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~ 143 (225)
+|+++|+|++++.+|+.+++++++||++||.||++ |||.|..+++.|++++++++++|+++++|+.| +.++
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d--------~~~~ 72 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTD--------DPEE 72 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESS--------SHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccc--------cccc
Confidence 69999999999999999999999999999999988 99999999999999999999999999999998 7788
Q ss_pred HHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEE
Q 027311 144 IQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVER 206 (225)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~ 206 (225)
++++. ++++.+||++. |.. ....+.|+..... ....+|++||||++|+|+++
T Consensus 73 ~~~~~-~~~~~~~~~~~--D~~-~~~~~~~~~~~~~-------~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 73 IKQFL-EEYGLPFPVLS--DPD-GELAKAFGIEDEK-------DTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHHHH-HHHTCSSEEEE--ETT-SHHHHHTTCEETT-------TSEESEEEEEEETTSBEEEE
T ss_pred hhhhh-hhhcccccccc--Ccc-hHHHHHcCCcccc-------CCceEeEEEEECCCCEEEeC
Confidence 89988 77789999984 433 3334444221110 12278999999999999975
No 14
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.94 E-value=5.3e-26 Score=170.82 Aligned_cols=147 Identities=18% Similarity=0.255 Sum_probs=113.9
Q ss_pred cCCCceecCeEEeCCCCCeecCCccCCCEEEEEEccc-CCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCH
Q 027311 63 SQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVAS-QCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN 141 (225)
Q Consensus 63 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~t-wC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~ 141 (225)
..+|+.+|+|++++.+|+.+++++++||++||+||++ |||.|..+++.+++++++++++|+++++|+.| +.
T Consensus 4 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d--------~~ 75 (154)
T PRK09437 4 LKAGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTD--------KP 75 (154)
T ss_pred CCCCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC--------CH
Confidence 4689999999999999999999999999999999976 78899999999999999999999999999987 67
Q ss_pred HHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHH
Q 027311 142 EQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLE 221 (225)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~ 221 (225)
+++++|+ ++++.+|+++. |..+. ..+.|+..........++. ...|++||||++|+|++.+.|....+.+.+.++
T Consensus 76 ~~~~~~~-~~~~~~~~~l~--D~~~~-~~~~~gv~~~~~~~~~~~~-~~~~~~~lid~~G~i~~~~~g~~~~~~~~~~~~ 150 (154)
T PRK09437 76 EKLSRFA-EKELLNFTLLS--DEDHQ-VAEQFGVWGEKKFMGKTYD-GIHRISFLIDADGKIEHVFDKFKTSNHHDVVLD 150 (154)
T ss_pred HHHHHHH-HHhCCCCeEEE--CCCch-HHHHhCCCccccccccccc-CcceEEEEECCCCEEEEEEcCCCcchhHHHHHH
Confidence 8999998 77899999884 44433 3344533211100000000 013788999999999999998776666555554
Q ss_pred h
Q 027311 222 C 222 (225)
Q Consensus 222 ~ 222 (225)
.
T Consensus 151 ~ 151 (154)
T PRK09437 151 Y 151 (154)
T ss_pred H
Confidence 4
No 15
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.94 E-value=8.7e-26 Score=171.73 Aligned_cols=145 Identities=17% Similarity=0.166 Sum_probs=109.7
Q ss_pred ccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccC-CCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCC
Q 027311 62 ASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQ-CGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD 140 (225)
Q Consensus 62 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~tw-C~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~ 140 (225)
...+|+.+|+|++.+.+|+.+++++++||++||+||++| ||+|..+++.|+++++++. +++|++||.| +
T Consensus 17 ~~~~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D--------~ 86 (167)
T PRK00522 17 LPQVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISAD--------L 86 (167)
T ss_pred CCCCCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCC--------C
Confidence 346899999999999999999999999999999999999 9999999999999999983 7999999988 6
Q ss_pred HHHHHHHHHhhcCCC-cceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC--CChhhHH
Q 027311 141 NEQIQEFACTRFKAE-FPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT--TSPLSIE 217 (225)
Q Consensus 141 ~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~--~~~~~l~ 217 (225)
....++|+ +++++. ++++ .|..+....+.|+...... ... ++ ..|++||||++|+|++.+.+. ....+++
T Consensus 87 ~~~~~~f~-~~~~~~~~~~l--sD~~~~~~~~~~gv~~~~~-~~~--g~-~~r~tfvId~~G~I~~~~~~~~~~~~~~~~ 159 (167)
T PRK00522 87 PFAQKRFC-GAEGLENVITL--SDFRDHSFGKAYGVAIAEG-PLK--GL-LARAVFVLDENNKVVYSELVPEITNEPDYD 159 (167)
T ss_pred HHHHHHHH-HhCCCCCceEe--ecCCccHHHHHhCCeeccc-ccC--Cc-eeeEEEEECCCCeEEEEEECCCcCCCCCHH
Confidence 67788888 777887 6777 4534434455564321110 000 11 245999999999999998543 3334555
Q ss_pred HHHHhh
Q 027311 218 VVLECL 223 (225)
Q Consensus 218 ~~l~~l 223 (225)
+.|+.|
T Consensus 160 ~~l~~l 165 (167)
T PRK00522 160 AALAAL 165 (167)
T ss_pred HHHHHh
Confidence 555544
No 16
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.94 E-value=1e-25 Score=172.34 Aligned_cols=138 Identities=25% Similarity=0.439 Sum_probs=122.1
Q ss_pred ccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCH
Q 027311 62 ASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN 141 (225)
Q Consensus 62 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~ 141 (225)
...+|+.+|+|++.+.+|+.+++++++||+++|+||++||++|+.+++.++++++++++.++++++|+.|+ +.
T Consensus 34 ~~~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~-------~~ 106 (173)
T PRK03147 34 KVQVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDE-------TE 106 (173)
T ss_pred ccCCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCC-------CH
Confidence 45789999999999999999999999999999999999999999999999999999998889999999985 77
Q ss_pred HHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHH
Q 027311 142 EQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLE 221 (225)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~ 221 (225)
+++.+|. ++++.+|+++ .|..+. ..+.| ++.++|++|+||++|+|+..+.|..+.+++.+.++
T Consensus 107 ~~~~~~~-~~~~~~~~~~--~d~~~~-~~~~~-------------~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~ 169 (173)
T PRK03147 107 LAVKNFV-NRYGLTFPVA--IDKGRQ-VIDAY-------------GVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLE 169 (173)
T ss_pred HHHHHHH-HHhCCCceEE--ECCcch-HHHHc-------------CCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHH
Confidence 8899998 8889999987 444433 33334 78889999999999999999999999999998887
Q ss_pred hh
Q 027311 222 CL 223 (225)
Q Consensus 222 ~l 223 (225)
++
T Consensus 170 ~~ 171 (173)
T PRK03147 170 KI 171 (173)
T ss_pred Hh
Confidence 65
No 17
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.94 E-value=6.2e-26 Score=167.63 Aligned_cols=138 Identities=23% Similarity=0.396 Sum_probs=111.6
Q ss_pred ceecCeEEeCCCCCeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHH
Q 027311 67 TSVHDFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQ 145 (225)
Q Consensus 67 ~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~ 145 (225)
+.+|+|+++|.+|+.+++++++||++||+|| ++|||.|..+++.+++++++++++++++++|++| +.++++
T Consensus 1 ~~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d--------~~~~~~ 72 (140)
T cd03017 1 DKAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPD--------SVESHA 72 (140)
T ss_pred CCCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC--------CHHHHH
Confidence 3689999999999999999999999999999 5899999999999999999999889999999987 678899
Q ss_pred HHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHH
Q 027311 146 EFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVL 220 (225)
Q Consensus 146 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l 220 (225)
+|+ ++++.+|+++. |.++. ..+.|+......+ + .....|++||||++|+|++.+.|....+.+.+.+
T Consensus 73 ~~~-~~~~~~~~~l~--D~~~~-~~~~~gv~~~~~~---~-~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 73 KFA-EKYGLPFPLLS--DPDGK-LAKAYGVWGEKKK---K-YMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred HHH-HHhCCCceEEE--CCccH-HHHHhCCcccccc---c-cCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 998 77899999884 44433 3344432211110 0 1122499999999999999999988777777665
No 18
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.93 E-value=8.9e-26 Score=172.75 Aligned_cols=135 Identities=18% Similarity=0.193 Sum_probs=110.7
Q ss_pred cCCCceecCeEEeCCCCC--eecCCcc-CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311 63 SQSKTSVHDFSVKDAKGQ--DVDLSIY-KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG 139 (225)
Q Consensus 63 ~~~g~~~p~f~l~~~~G~--~~~l~~~-~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~ 139 (225)
..+|.++|+|++++.+|+ .++++++ +||+++|+||++||++|+.++|.++++++ +++++++|+.++
T Consensus 34 ~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----~~~~vi~V~~~~------- 102 (173)
T TIGR00385 34 ALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----DGLPIVGVDYKD------- 102 (173)
T ss_pred hhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----cCCEEEEEECCC-------
Confidence 468999999999999997 4554565 79999999999999999999999988764 469999999864
Q ss_pred CHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHH
Q 027311 140 DNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVV 219 (225)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~ 219 (225)
+.++..+|+ ++++.+|+.+. .|..+. ..+.| ++.++|++|+||++|+|++++.|..+.+++++.
T Consensus 103 ~~~~~~~~~-~~~~~~f~~v~-~D~~~~-~~~~~-------------~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~ 166 (173)
T TIGR00385 103 QSQNALKFL-KELGNPYQAIL-IDPNGK-LGLDL-------------GVYGAPETFLVDGNGVILYRHAGPLNNEVWTEG 166 (173)
T ss_pred ChHHHHHHH-HHcCCCCceEE-ECCCCc-hHHhc-------------CCeeCCeEEEEcCCceEEEEEeccCCHHHHHHH
Confidence 567777888 77888888431 354443 33333 778899999999999999999999999999999
Q ss_pred HHhhh
Q 027311 220 LECLC 224 (225)
Q Consensus 220 l~~ll 224 (225)
|++++
T Consensus 167 l~~~~ 171 (173)
T TIGR00385 167 FLPAM 171 (173)
T ss_pred HHHHh
Confidence 98876
No 19
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.93 E-value=1.5e-25 Score=171.32 Aligned_cols=143 Identities=23% Similarity=0.398 Sum_probs=118.3
Q ss_pred CceecCeEEeCCCCCeecCCcc-CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHH
Q 027311 66 KTSVHDFSVKDAKGQDVDLSIY-KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI 144 (225)
Q Consensus 66 g~~~p~f~l~~~~G~~~~l~~~-~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~ 144 (225)
|+.+|+|++.+.+|+.++++++ +||++||+||++|||.|..+++.|++++++++++++++++|++|.....+.++.+++
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~ 80 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENM 80 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHH
Confidence 6789999999999999999998 999999999999999999999999999999998889999999985333333578999
Q ss_pred HHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcC---------CCCChhh
Q 027311 145 QEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYA---------PTTSPLS 215 (225)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~---------g~~~~~~ 215 (225)
++++ ++++.+|+++. |.++. ..+.| ++..+|++||||++|+|+++.. +..+..+
T Consensus 81 ~~~~-~~~~~~~~~l~--D~~~~-~~~~~-------------~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~ 143 (171)
T cd02969 81 KAKA-KEHGYPFPYLL--DETQE-VAKAY-------------GAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRD 143 (171)
T ss_pred HHHH-HHCCCCceEEE--CCchH-HHHHc-------------CCCcCCcEEEECCCCeEEEeecccCCcccccccccHHH
Confidence 9999 78899999984 44432 33333 7778899999999999998742 1234567
Q ss_pred HHHHHHhhhC
Q 027311 216 IEVVLECLCC 225 (225)
Q Consensus 216 l~~~l~~ll~ 225 (225)
+.+.|+++|+
T Consensus 144 ~~~~i~~~l~ 153 (171)
T cd02969 144 LRAALDALLA 153 (171)
T ss_pred HHHHHHHHHc
Confidence 9999988873
No 20
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.93 E-value=1e-25 Score=163.90 Aligned_cols=123 Identities=18% Similarity=0.202 Sum_probs=103.1
Q ss_pred eecCeEEeCCCC--CeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHH
Q 027311 68 SVHDFSVKDAKG--QDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQ 145 (225)
Q Consensus 68 ~~p~f~l~~~~G--~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~ 145 (225)
++|+|++.+++| +.+++++++||++||+||++||++|+.++|.++++.+++ ++++++|+.++ +.+.++
T Consensus 2 ~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~-------~~~~~~ 71 (127)
T cd03010 2 PAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGINYKD-------NPENAL 71 (127)
T ss_pred CCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCC-------CHHHHH
Confidence 679999999999 889999999999999999999999999999999998775 39999999874 788999
Q ss_pred HHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhH
Q 027311 146 EFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSI 216 (225)
Q Consensus 146 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l 216 (225)
+|+ ++++..|+.+. .|..+. ..+.| ++.++|++|+||++|+|++++.|..+.+.+
T Consensus 72 ~~~-~~~~~~~~~~~-~D~~~~-~~~~~-------------~v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 72 AWL-ARHGNPYAAVG-FDPDGR-VGIDL-------------GVYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred HHH-HhcCCCCceEE-ECCcch-HHHhc-------------CCCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 998 77888887431 343332 33334 788899999999999999999998876643
No 21
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.93 E-value=5.7e-25 Score=163.18 Aligned_cols=136 Identities=14% Similarity=0.174 Sum_probs=105.3
Q ss_pred CCceecCeEEeCCCCCeecCCccCCCEEEEEEcccC-CCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHH
Q 027311 65 SKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQ-CGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQ 143 (225)
Q Consensus 65 ~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~tw-C~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~ 143 (225)
+|+.+|+|++.+.+|+.+++++++||++||+||++| ||+|+.+++.|++++++++ |+.+++||+| +.+.
T Consensus 2 ~G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d--------~~~~ 71 (143)
T cd03014 2 VGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISAD--------LPFA 71 (143)
T ss_pred CCCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECC--------CHHH
Confidence 689999999999999999999999999999999998 6999999999999999984 6999999987 6677
Q ss_pred HHHHHHhhcCC-CcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC--ChhhHHHHH
Q 027311 144 IQEFACTRFKA-EFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT--SPLSIEVVL 220 (225)
Q Consensus 144 ~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~--~~~~l~~~l 220 (225)
+++|. ++++. .++++. |.......+.|+...... ++ ..|++||||++|+|++.+.|.. ...++++.|
T Consensus 72 ~~~~~-~~~~~~~~~~l~--D~~~~~~~~~~gv~~~~~------~~-~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 72 QKRWC-GAEGVDNVTTLS--DFRDHSFGKAYGVLIKDL------GL-LARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred HHHHH-HhcCCCCceEee--cCcccHHHHHhCCeeccC------Cc-cceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 78887 66675 788874 433233444553321110 11 2689999999999999988643 233555544
No 22
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.93 E-value=7.4e-25 Score=167.71 Aligned_cols=141 Identities=20% Similarity=0.248 Sum_probs=106.5
Q ss_pred CCceecCeEEeCCCC----CeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311 65 SKTSVHDFSVKDAKG----QDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG 139 (225)
Q Consensus 65 ~g~~~p~f~l~~~~G----~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~ 139 (225)
+|+.+|+|++.+.+| +.++|++++||++||+|| ++||++|..+++.|++++++|+++|+.+++||+|
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d-------- 72 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTD-------- 72 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecC--------
Confidence 589999999999988 789999999999999999 8999999999999999999999999999999987
Q ss_pred CHHHHHHHHHhh------cCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC--
Q 027311 140 DNEQIQEFACTR------FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT-- 211 (225)
Q Consensus 140 ~~~~~~~~~~~~------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~-- 211 (225)
+.+...+|.... .+.+|+++ .|..+. ..+.|+...... + ..+|++||||++|+|++++.+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~f~~l--~D~~~~-~~~~~gv~~~~~------~-~~~p~~~lID~~G~I~~~~~~~~~~ 142 (173)
T cd03015 73 SHFSHLAWRNTPRKEGGLGKINFPLL--ADPKKK-ISRDYGVLDEEE------G-VALRGTFIIDPEGIIRHITVNDLPV 142 (173)
T ss_pred CHHHHHHHHHhhhhhCCccCcceeEE--ECCchh-HHHHhCCccccC------C-ceeeEEEEECCCCeEEEEEecCCCC
Confidence 444555554221 45788888 454443 333453211100 0 14689999999999999996543
Q ss_pred --ChhhHHHHHHhh
Q 027311 212 --SPLSIEVVLECL 223 (225)
Q Consensus 212 --~~~~l~~~l~~l 223 (225)
+.+++.+.|+++
T Consensus 143 ~~~~~~il~~l~~~ 156 (173)
T cd03015 143 GRSVDETLRVLDAL 156 (173)
T ss_pred CCCHHHHHHHHHHh
Confidence 234566666544
No 23
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.93 E-value=4.5e-25 Score=164.73 Aligned_cols=130 Identities=18% Similarity=0.343 Sum_probs=104.9
Q ss_pred CCCceecCeEEeCCCCCeecCCccCC-CEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCH
Q 027311 64 QSKTSVHDFSVKDAKGQDVDLSIYKG-KLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN 141 (225)
Q Consensus 64 ~~g~~~p~f~l~~~~G~~~~l~~~~g-k~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~ 141 (225)
.+|+.+|+|++.+.+|+.+++++++| |++||.|| ++||+.|..+++.|++++++++++++++++|+.| +.
T Consensus 2 ~~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d--------~~ 73 (149)
T cd03018 2 EVGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVD--------SP 73 (149)
T ss_pred CCCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCC--------CH
Confidence 57999999999999999999999999 99998888 9999999999999999999999889999999987 67
Q ss_pred HHHHHHHHhhcCCCcceeeeecCC-CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC
Q 027311 142 EQIQEFACTRFKAEFPIFDKVDVN-GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT 211 (225)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~ 211 (225)
+.+++|+ ++++.+||++. |.. .......|+...... + ...|++||||++|+|++++.|..
T Consensus 74 ~~~~~~~-~~~~~~~~~~~--D~~~~~~~~~~~g~~~~~~------~-~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 74 FSLRAWA-EENGLTFPLLS--DFWPHGEVAKAYGVFDEDL------G-VAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred HHHHHHH-HhcCCCceEec--CCCchhHHHHHhCCccccC------C-CccceEEEECCCCEEEEEEecCC
Confidence 7888998 77899999884 432 022233342211000 1 12458999999999999998865
No 24
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.92 E-value=1.4e-24 Score=168.25 Aligned_cols=132 Identities=14% Similarity=0.206 Sum_probs=104.5
Q ss_pred ccCCCceecCeEEeCCCCCeecCC--ccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311 62 ASQSKTSVHDFSVKDAKGQDVDLS--IYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG 139 (225)
Q Consensus 62 ~~~~g~~~p~f~l~~~~G~~~~l~--~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~ 139 (225)
+..+|+.+|+|+++|.+|+.++++ +++||+++|+||++|||+|+.++|.++++++++ ++.+++|+.|
T Consensus 45 ~~~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~~~vv~Is~~-------- 113 (189)
T TIGR02661 45 GPDVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---ETDVVMISDG-------- 113 (189)
T ss_pred CCCCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---CCcEEEEeCC--------
Confidence 357999999999999999999995 579999999999999999999999999988653 4778888854
Q ss_pred CHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHH
Q 027311 140 DNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVV 219 (225)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~ 219 (225)
+.+++++|+ ++++++++.+. .+ ....+.| ++..+|++|+||++|+|+++.. ....+++++.
T Consensus 114 ~~~~~~~~~-~~~~~~~~~~~---~~-~~i~~~y-------------~v~~~P~~~lID~~G~I~~~g~-~~~~~~le~l 174 (189)
T TIGR02661 114 TPAEHRRFL-KDHELGGERYV---VS-AEIGMAF-------------QVGKIPYGVLLDQDGKIRAKGL-TNTREHLESL 174 (189)
T ss_pred CHHHHHHHH-HhcCCCcceee---ch-hHHHHhc-------------cCCccceEEEECCCCeEEEccC-CCCHHHHHHH
Confidence 678889998 77888877542 22 2233333 7888999999999999998743 2345567666
Q ss_pred HHhh
Q 027311 220 LECL 223 (225)
Q Consensus 220 l~~l 223 (225)
++.+
T Consensus 175 l~~l 178 (189)
T TIGR02661 175 LEAD 178 (189)
T ss_pred HHHH
Confidence 6654
No 25
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.92 E-value=5.9e-25 Score=159.73 Aligned_cols=113 Identities=20% Similarity=0.307 Sum_probs=95.3
Q ss_pred CCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcce
Q 027311 79 GQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPI 158 (225)
Q Consensus 79 G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (225)
|+.+++++++||++||+||++||++|+.++|.|++++++++++++.+++|+.+++. .+++.+++++|+ ++++++||+
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~--~~~~~~~~~~~~-~~~~~~~p~ 89 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFA--FERDLANVKSAV-LRYGITYPV 89 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccc--cccCHHHHHHHH-HHcCCCCCE
Confidence 57899999999999999999999999999999999999999889999999875422 224788999998 788999998
Q ss_pred eeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC
Q 027311 159 FDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT 210 (225)
Q Consensus 159 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~ 210 (225)
+. |.++. ....| ++.++|++||||++|+|++++.|.
T Consensus 90 ~~--D~~~~-~~~~~-------------~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 90 AN--DNDYA-TWRAY-------------GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred EE--CCchH-HHHHh-------------CCCcCCeEEEECCCCcEEEEEecC
Confidence 83 44332 22233 788899999999999999999884
No 26
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.92 E-value=3.7e-25 Score=163.08 Aligned_cols=107 Identities=11% Similarity=0.159 Sum_probs=85.1
Q ss_pred CeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcC-------CeEEEEEecCCCCCCCCCCHHHHHHHHHhhc
Q 027311 80 QDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ-------GLEILAFPCNQFGAQEPGDNEQIQEFACTRF 152 (225)
Q Consensus 80 ~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~-------~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~ 152 (225)
+.+++++++||+++|+|||||||+|+.++|.|++++++++++ ++++|+||.|. +.+++++|+ ++.
T Consensus 16 ~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~-------~~~~~~~f~-~~~ 87 (146)
T cd03008 16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQ-------SEQQQESFL-KDM 87 (146)
T ss_pred ccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCC-------CHHHHHHHH-HHC
Confidence 456788999999999999999999999999999999988653 69999999885 667788998 777
Q ss_pred CCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEc
Q 027311 153 KAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERY 207 (225)
Q Consensus 153 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~ 207 (225)
+++|+.+...+..+......| ++.++|++||||++|+|+++.
T Consensus 88 ~~~~~~~p~~~~~~~~l~~~y-------------~v~~iPt~vlId~~G~Vv~~~ 129 (146)
T cd03008 88 PKKWLFLPFEDEFRRELEAQF-------------SVEELPTVVVLKPDGDVLAAN 129 (146)
T ss_pred CCCceeecccchHHHHHHHHc-------------CCCCCCEEEEECCCCcEEeeC
Confidence 877755421222112233333 888999999999999999873
No 27
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.92 E-value=1.3e-24 Score=168.22 Aligned_cols=140 Identities=16% Similarity=0.213 Sum_probs=104.8
Q ss_pred CCCceecCeEEeC-CCCC--eecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311 64 QSKTSVHDFSVKD-AKGQ--DVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG 139 (225)
Q Consensus 64 ~~g~~~p~f~l~~-~~G~--~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~ 139 (225)
.+|+.+|+|++.+ .+|+ .+++++++||++||+|| ++||++|..+++.|++++++++++|++|++||+|
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D-------- 74 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTD-------- 74 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCC--------
Confidence 5799999999998 5776 68888999999999999 9999999999999999999999889999999998
Q ss_pred CHHHHHHHHHh---hcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC----C
Q 027311 140 DNEQIQEFACT---RFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT----S 212 (225)
Q Consensus 140 ~~~~~~~~~~~---~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~----~ 212 (225)
+.+..++|... ..+++||++. |.++ ...+.|+...... + .+.|++||||++|+|++.+.+.. +
T Consensus 75 ~~~~~~~~~~~~~~~~~l~fplls--D~~~-~~a~~~gv~~~~~------g-~~~p~tfiID~~G~I~~~~~~~~~~~~~ 144 (187)
T TIGR03137 75 THFVHKAWHDTSEAIGKITYPMLG--DPTG-VLTRNFGVLIEEA------G-LADRGTFVIDPEGVIQAVEITDNGIGRD 144 (187)
T ss_pred CHHHHHHHHhhhhhccCcceeEEE--CCcc-HHHHHhCCcccCC------C-ceeeEEEEECCCCEEEEEEEeCCCCCCC
Confidence 55666666522 1367888884 4433 3444453321100 1 14699999999999999876433 3
Q ss_pred hhhHHHHHH
Q 027311 213 PLSIEVVLE 221 (225)
Q Consensus 213 ~~~l~~~l~ 221 (225)
.+++.+.|+
T Consensus 145 ~~~ll~~l~ 153 (187)
T TIGR03137 145 ASELLRKIK 153 (187)
T ss_pred HHHHHHHHH
Confidence 344544443
No 28
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.92 E-value=2.5e-24 Score=168.38 Aligned_cols=142 Identities=22% Similarity=0.353 Sum_probs=108.1
Q ss_pred CCCceecCeEEeCCCCCeecCCccCCCEEEE-EEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHH
Q 027311 64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLLLI-VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE 142 (225)
Q Consensus 64 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv-~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~ 142 (225)
.+|+.+|+|++.+.+| .+++++++||++|| +||++|||+|..|++.|++++++++++|+++++||+| +.+
T Consensus 3 ~vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D--------~~~ 73 (202)
T PRK13190 3 KLGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVD--------SIY 73 (202)
T ss_pred CCCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CHH
Confidence 6899999999999988 69999999998776 6899999999999999999999999999999999998 555
Q ss_pred HHHHHHH---hhcC--CCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEc----CCCCCh
Q 027311 143 QIQEFAC---TRFK--AEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERY----APTTSP 213 (225)
Q Consensus 143 ~~~~~~~---~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~----~g~~~~ 213 (225)
...+|+. ++++ ++||++. |.++. ..+.|+.+.... + ..+|++||||++|+|++.. .+..+.
T Consensus 74 ~~~~w~~~~~~~~g~~~~fPll~--D~~~~-ia~~ygv~~~~~------g-~~~p~~fiId~~G~I~~~~~~~~~~gr~~ 143 (202)
T PRK13190 74 SHIAWLRDIEERFGIKIPFPVIA--DIDKE-LAREYNLIDENS------G-ATVRGVFIIDPNQIVRWMIYYPAETGRNI 143 (202)
T ss_pred HHHHHHHhHHHhcCCCceEEEEE--CCChH-HHHHcCCccccC------C-cEEeEEEEECCCCEEEEEEEeCCCCCCCH
Confidence 5555542 3455 5799884 54443 344554322111 1 2479999999999999876 223356
Q ss_pred hhHHHHHHhhh
Q 027311 214 LSIEVVLECLC 224 (225)
Q Consensus 214 ~~l~~~l~~ll 224 (225)
+++.+.|+++.
T Consensus 144 ~ellr~l~~l~ 154 (202)
T PRK13190 144 DEIIRITKALQ 154 (202)
T ss_pred HHHHHHHHHhh
Confidence 67777777653
No 29
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.91 E-value=4.3e-24 Score=185.65 Aligned_cols=139 Identities=19% Similarity=0.203 Sum_probs=112.8
Q ss_pred cCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHH
Q 027311 63 SQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE 142 (225)
Q Consensus 63 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~ 142 (225)
...++.+|+|++.|.+|+.++++ +||++||+|||+||++|+.++|.|++++++++.+++.||+|+++.... .++.+
T Consensus 32 ~~~~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~--e~~~~ 107 (521)
T PRK14018 32 ATVPHTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLH--EKKDG 107 (521)
T ss_pred ccccCCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccc--cccHH
Confidence 46778999999999999999998 799999999999999999999999999999987789999999864221 22566
Q ss_pred HHHHHHHhhcCC-CcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHH
Q 027311 143 QIQEFACTRFKA-EFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLE 221 (225)
Q Consensus 143 ~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~ 221 (225)
+++++. +..+. .+|++ .|..+. ..+.| ++.++|+++|||++|+|+.+..|..+.+++++.|+
T Consensus 108 ~~~~~~-~~~~y~~~pV~--~D~~~~-lak~f-------------gV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 108 DFQKWY-AGLDYPKLPVL--TDNGGT-LAQSL-------------NISVYPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred HHHHHH-HhCCCccccee--ccccHH-HHHHc-------------CCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 777777 44333 45666 343332 22233 88999999999999999999999999999988887
Q ss_pred h
Q 027311 222 C 222 (225)
Q Consensus 222 ~ 222 (225)
.
T Consensus 171 ~ 171 (521)
T PRK14018 171 N 171 (521)
T ss_pred H
Confidence 3
No 30
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.91 E-value=9.5e-24 Score=150.55 Aligned_cols=110 Identities=14% Similarity=0.239 Sum_probs=92.1
Q ss_pred cCeEEeCCCCCeecCCccC-CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHH
Q 027311 70 HDFSVKDAKGQDVDLSIYK-GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFA 148 (225)
Q Consensus 70 p~f~l~~~~G~~~~l~~~~-gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~ 148 (225)
|+|++++.+|+.+++++++ ||++||+||++||++|+.++|.++++++++++ ++.+++++ |. +.++..+++
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~-~~-------~~~~~~~~~ 71 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLAS-DG-------EKAEHQRFL 71 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEEe-CC-------CHHHHHHHH
Confidence 7899999999999999997 99999999999999999999999999998865 48888876 42 678888888
Q ss_pred HhhcCC-CcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEc
Q 027311 149 CTRFKA-EFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERY 207 (225)
Q Consensus 149 ~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~ 207 (225)
+++++ .+|.+. + ....+.| ++.++|++||||++|+|+++.
T Consensus 72 -~~~~~~~~p~~~--~---~~~~~~~-------------~~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 72 -KKHGLEAFPYVL--S---AELGMAY-------------QVSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred -HHhCCCCCcEEe--c---HHHHhhc-------------CCCCcCeEEEECCCCeEEecc
Confidence 77787 488762 2 1233334 788899999999999998764
No 31
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.91 E-value=1.4e-23 Score=165.11 Aligned_cols=143 Identities=16% Similarity=0.202 Sum_probs=108.7
Q ss_pred CCCceecCeEEeCCCCCeecCCccCCCEE-EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHH
Q 027311 64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLL-LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE 142 (225)
Q Consensus 64 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~v-lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~ 142 (225)
.+|+.+|+|++.+++|+...+++++||++ |++||++|||+|..|++.+++++++|+++|+++++||+| +..
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D--------~~~ 74 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVD--------QVF 74 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CHH
Confidence 58999999999999999888899999985 578999999999999999999999999999999999998 444
Q ss_pred HHH---HHHHh--hcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC----Ch
Q 027311 143 QIQ---EFACT--RFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT----SP 213 (225)
Q Consensus 143 ~~~---~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~----~~ 213 (225)
... +++++ ..+++||++. |.++. ..+.|+.+.... +....|++||||++|+|++.+.... +.
T Consensus 75 ~~~~w~~~i~~~~~~~i~fPil~--D~~~~-va~~yg~~~~~~------~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~ 145 (215)
T PRK13599 75 SHIKWVEWIKDNTNIAIPFPVIA--DDLGK-VSNQLGMIHPGK------GTNTVRAVFIVDDKGTIRLIMYYPQEVGRNV 145 (215)
T ss_pred HHHHHHHhHHHhcCCCCceeEEE--CCCch-HHHHcCCCccCC------CCceeeEEEEECCCCEEEEEEEcCCCCCCCH
Confidence 444 44422 3478899984 54443 445565432211 2235799999999999999864222 34
Q ss_pred hhHHHHHHhh
Q 027311 214 LSIEVVLECL 223 (225)
Q Consensus 214 ~~l~~~l~~l 223 (225)
+++.+.|++|
T Consensus 146 ~eilr~l~~l 155 (215)
T PRK13599 146 DEILRALKAL 155 (215)
T ss_pred HHHHHHHHHh
Confidence 5666666654
No 32
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.91 E-value=5.5e-24 Score=157.57 Aligned_cols=137 Identities=19% Similarity=0.262 Sum_probs=104.5
Q ss_pred eecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCC-ChHhHHHHHHHHHHHhcCC---eEEEEEecCCCCCCCCCCHHH
Q 027311 68 SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGL-TNSNYTELSQLYDKYKNQG---LEILAFPCNQFGAQEPGDNEQ 143 (225)
Q Consensus 68 ~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~-C~~~~~~l~~l~~~~~~~~---~~iv~Is~d~~~~~~~~~~~~ 143 (225)
.+|+|++.+.+|+.+++++++||++||.||++||+. |..+++.++++++++++++ +++++|+.|. ..++.+.
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~----~~d~~~~ 76 (142)
T cd02968 1 IGPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP----ERDTPEV 76 (142)
T ss_pred CCCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC----CCCCHHH
Confidence 379999999999999999999999999999999996 9999999999999998764 9999999973 3357788
Q ss_pred HHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccC-CCCCCCccccceeEEEECCCCcEEEEcCC
Q 027311 144 IQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSK-GGLFGDSIKWNFSKFLVDKEGNVVERYAP 209 (225)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~v~~~P~~~lid~~G~I~~~~~g 209 (225)
+++|+ ++++.+|+++.+.+.......+.|+...... .+..++++.+.|.+||||++|+|++++.+
T Consensus 77 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~~ 142 (142)
T cd02968 77 LKAYA-KAFGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYGG 142 (142)
T ss_pred HHHHH-HHhCCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeecC
Confidence 99998 7778899988432211122333343222111 11112245667899999999999998754
No 33
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.90 E-value=3.3e-23 Score=159.54 Aligned_cols=142 Identities=10% Similarity=0.210 Sum_probs=109.4
Q ss_pred CCCceecCeEEeCC-CC--CeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311 64 QSKTSVHDFSVKDA-KG--QDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG 139 (225)
Q Consensus 64 ~~g~~~p~f~l~~~-~G--~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~ 139 (225)
.+|+++|+|+.... +| .+++|++++||++||+|| ++|||+|..|++.+++++++++++|+++++||.|
T Consensus 3 ~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D-------- 74 (187)
T PRK10382 3 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTD-------- 74 (187)
T ss_pred ccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCC--------
Confidence 68999999998874 34 567888999999999999 9999999999999999999999999999999998
Q ss_pred CHHHHHHHHHhh---cCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC----C
Q 027311 140 DNEQIQEFACTR---FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT----S 212 (225)
Q Consensus 140 ~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~----~ 212 (225)
+....++|..+. .+++||+++ |.+ ....+.|+.+.... ++ ..|++||||++|+|++.+.... +
T Consensus 75 ~~~~~~a~~~~~~~~~~l~fplls--D~~-~~ia~~ygv~~~~~------g~-~~r~tfIID~~G~I~~~~~~~~~~~~~ 144 (187)
T PRK10382 75 THFTHKAWHSSSETIAKIKYAMIG--DPT-GALTRNFDNMREDE------GL-ADRATFVVDPQGIIQAIEVTAEGIGRD 144 (187)
T ss_pred CHHHHHHHHHhhccccCCceeEEE--cCc-hHHHHHcCCCcccC------Cc-eeeEEEEECCCCEEEEEEEeCCCCCCC
Confidence 778888887332 478999994 443 44555665432110 11 2499999999999999865432 4
Q ss_pred hhhHHHHHHhh
Q 027311 213 PLSIEVVLECL 223 (225)
Q Consensus 213 ~~~l~~~l~~l 223 (225)
.+++.+.|+++
T Consensus 145 ~~eil~~l~al 155 (187)
T PRK10382 145 ASDLLRKIKAA 155 (187)
T ss_pred HHHHHHHHHhh
Confidence 45666666554
No 34
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.90 E-value=6.9e-23 Score=161.34 Aligned_cols=143 Identities=17% Similarity=0.290 Sum_probs=105.7
Q ss_pred cCCCceecCeEEeCCCCCeecC-CccCCCEEEE-EEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCC
Q 027311 63 SQSKTSVHDFSVKDAKGQDVDL-SIYKGKLLLI-VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD 140 (225)
Q Consensus 63 ~~~g~~~p~f~l~~~~G~~~~l-~~~~gk~vlv-~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~ 140 (225)
+.+|+.+|+|++.+.+|+ +.+ ++++||++|| +||++||++|..|++.|++++++|+++|++|++||+| +
T Consensus 7 ~~iG~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~D--------s 77 (215)
T PRK13191 7 PLIGEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVD--------S 77 (215)
T ss_pred ccCCCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECC--------C
Confidence 468999999999999997 555 5589997776 7889999999999999999999999999999999998 4
Q ss_pred HHHHHHH---HHh--hcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC----
Q 027311 141 NEQIQEF---ACT--RFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT---- 211 (225)
Q Consensus 141 ~~~~~~~---~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~---- 211 (225)
....++| ..+ ..+++||+++ |.++. ..+.|+.+.... .....|++||||++|+|++...+..
T Consensus 78 ~~~h~aw~~~~~~~~~~~i~fPlls--D~~~~-ia~~ygv~~~~~------~~~~~r~tfIID~~G~Ir~~~~~~~~~gr 148 (215)
T PRK13191 78 NISHIEWVMWIEKNLKVEVPFPIIA--DPMGN-VAKRLGMIHAES------STATVRAVFIVDDKGTVRLILYYPMEIGR 148 (215)
T ss_pred HHHHHHHHhhHHHhcCCCCceEEEE--CCchH-HHHHcCCccccc------CCceeEEEEEECCCCEEEEEEecCCCCCC
Confidence 5544444 422 2468899984 54433 444565432211 1234799999999999999865433
Q ss_pred ChhhHHHHHHhh
Q 027311 212 SPLSIEVVLECL 223 (225)
Q Consensus 212 ~~~~l~~~l~~l 223 (225)
+.+++.+.|+++
T Consensus 149 ~~~eilr~l~al 160 (215)
T PRK13191 149 NIDEILRAIRAL 160 (215)
T ss_pred CHHHHHHHHHHh
Confidence 345666666554
No 35
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.90 E-value=2e-23 Score=196.74 Aligned_cols=143 Identities=17% Similarity=0.205 Sum_probs=120.2
Q ss_pred cCCCceecCeEEeC--CCCCeecC-CccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311 63 SQSKTSVHDFSVKD--AKGQDVDL-SIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG 139 (225)
Q Consensus 63 ~~~g~~~p~f~l~~--~~G~~~~l-~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~ 139 (225)
...|+.+|+|...+ .+|+++++ ++++||++||+|||+||++|+.++|.|++++++|+++++.|++|+.+.++ +++
T Consensus 391 ~~~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D--~~~ 468 (1057)
T PLN02919 391 KKTATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFD--NEK 468 (1057)
T ss_pred cccCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEeccccc--ccc
Confidence 46799999999876 68999998 58999999999999999999999999999999999889999999865332 223
Q ss_pred CHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHH
Q 027311 140 DNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVV 219 (225)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~ 219 (225)
+.+++++++ ++++++||++ .|..+. ....| ++.++|+++|||++|+|++++.|....+++++.
T Consensus 469 ~~~~~~~~~-~~~~i~~pvv--~D~~~~-~~~~~-------------~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~ 531 (1057)
T PLN02919 469 DLEAIRNAV-LRYNISHPVV--NDGDMY-LWREL-------------GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDL 531 (1057)
T ss_pred cHHHHHHHH-HHhCCCccEE--ECCchH-HHHhc-------------CCCccceEEEECCCCeEEEEEecccCHHHHHHH
Confidence 567888888 7889999988 343332 22222 889999999999999999999999888899998
Q ss_pred HHhhh
Q 027311 220 LECLC 224 (225)
Q Consensus 220 l~~ll 224 (225)
|++++
T Consensus 532 l~~~l 536 (1057)
T PLN02919 532 VEAAL 536 (1057)
T ss_pred HHHHH
Confidence 88765
No 36
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.90 E-value=4.5e-23 Score=161.52 Aligned_cols=142 Identities=15% Similarity=0.240 Sum_probs=104.6
Q ss_pred CCceecCeEEeCCCCCeecCCccCC-CEE-EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHH
Q 027311 65 SKTSVHDFSVKDAKGQDVDLSIYKG-KLL-LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE 142 (225)
Q Consensus 65 ~g~~~p~f~l~~~~G~~~~l~~~~g-k~v-lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~ 142 (225)
+|+.+|+|++.+.+| .+++++++| |++ |++||++|||.|..+++.|++++++++++|+++++||+| +.+
T Consensus 1 vG~~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D--------~~~ 71 (203)
T cd03016 1 LGDTAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVD--------SVE 71 (203)
T ss_pred CcCCCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECC--------CHH
Confidence 488999999999998 489999998 765 457889999999999999999999999999999999998 555
Q ss_pred HHHHHHHh-----hcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC----Ch
Q 027311 143 QIQEFACT-----RFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT----SP 213 (225)
Q Consensus 143 ~~~~~~~~-----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~----~~ 213 (225)
..++|..+ +.+++||++. |.++ ...+.|+...... + .-...|++||||++|+|++.+.+.. +.
T Consensus 72 ~~~~~~~~i~~~~~~~~~fpil~--D~~~-~ia~~yg~~~~~~----~-~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~ 143 (203)
T cd03016 72 SHIKWIEDIEEYTGVEIPFPIIA--DPDR-EVAKLLGMIDPDA----G-STLTVRAVFIIDPDKKIRLILYYPATTGRNF 143 (203)
T ss_pred HHHHHHhhHHHhcCCCCceeEEE--CchH-HHHHHcCCccccC----C-CCceeeEEEEECCCCeEEEEEecCCCCCCCH
Confidence 55555411 1688999984 4443 2344454332110 0 1123578999999999999876543 34
Q ss_pred hhHHHHHHhh
Q 027311 214 LSIEVVLECL 223 (225)
Q Consensus 214 ~~l~~~l~~l 223 (225)
+++.+.|+++
T Consensus 144 ~ell~~l~~l 153 (203)
T cd03016 144 DEILRVVDAL 153 (203)
T ss_pred HHHHHHHHHH
Confidence 5666666654
No 37
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.90 E-value=6.6e-24 Score=161.69 Aligned_cols=136 Identities=18% Similarity=0.202 Sum_probs=101.9
Q ss_pred cccccCCCceecCeEEeCC-----CC-----CeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEE---
Q 027311 59 HTMASQSKTSVHDFSVKDA-----KG-----QDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEI--- 125 (225)
Q Consensus 59 ~~~~~~~g~~~p~f~l~~~-----~G-----~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~i--- 125 (225)
.+.....|+++|..++.+- +| +.++.++++||+.||+|||+||++|+.+.|.|.++ +++|+.+
T Consensus 19 ~a~~~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~~~~~~~y 94 (184)
T TIGR01626 19 WAHNLQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAI----KAAKFPPVKY 94 (184)
T ss_pred hhhhhhcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHH----HHcCCCcccc
Confidence 3345678889998877764 44 45667788999999999999999999999999999 3456888
Q ss_pred ---EEEecCCCCCCCCCCHHHHHHHHHhhcCCCcc---eeeeecCCCCCchhhhhhccccCCCCCCCccccceeE-EEEC
Q 027311 126 ---LAFPCNQFGAQEPGDNEQIQEFACTRFKAEFP---IFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSK-FLVD 198 (225)
Q Consensus 126 ---v~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~-~lid 198 (225)
++||.|+ ...+...-++.|+ ++.+..|| ++ .|..+. ....| ++.++|++ ||||
T Consensus 95 ~~t~~IN~dd---~~~~~~~fVk~fi-e~~~~~~P~~~vl--lD~~g~-v~~~~-------------gv~~~P~T~fVID 154 (184)
T TIGR01626 95 QTTTIINADD---AIVGTGMFVKSSA-KKGKKENPWSQVV--LDDKGA-VKNAW-------------QLNSEDSAIIVLD 154 (184)
T ss_pred cceEEEECcc---chhhHHHHHHHHH-HHhcccCCcceEE--ECCcch-HHHhc-------------CCCCCCceEEEEC
Confidence 9999885 1111223355555 66677888 55 454443 23333 88999888 8999
Q ss_pred CCCcEEEEcCCCCChhhHHH
Q 027311 199 KEGNVVERYAPTTSPLSIEV 218 (225)
Q Consensus 199 ~~G~I~~~~~g~~~~~~l~~ 218 (225)
++|+|++++.|..+.+++++
T Consensus 155 k~GkVv~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 155 KTGKVKFVKEGALSDSDIQT 174 (184)
T ss_pred CCCcEEEEEeCCCCHHHHHH
Confidence 99999999999988876655
No 38
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.90 E-value=6.8e-23 Score=151.26 Aligned_cols=129 Identities=19% Similarity=0.339 Sum_probs=103.4
Q ss_pred eecCeEEeCCCCCeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHH
Q 027311 68 SVHDFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQE 146 (225)
Q Consensus 68 ~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~ 146 (225)
.+|+|++.|.+|+.+++++++||++||+|| ++||+.|..+++.|+++++++++.++.+++|+.| +.+.+++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d--------~~~~~~~ 72 (140)
T cd02971 1 KAPDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD--------SPFSHKA 72 (140)
T ss_pred CCCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CHHHHHH
Confidence 379999999999999999999999999999 7899999999999999999998888999999987 6778888
Q ss_pred HHHhhc-CCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCC
Q 027311 147 FACTRF-KAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTS 212 (225)
Q Consensus 147 ~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~ 212 (225)
|. +++ +.+|+++. |..+ ...+.|+....... + +....|++||||++|+|++++.|...
T Consensus 73 ~~-~~~~~~~~~~l~--D~~~-~~~~~~g~~~~~~~---~-~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 73 WA-EKEGGLNFPLLS--DPDG-EFAKAYGVLIEKSA---G-GGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred HH-hcccCCCceEEE--CCCh-HHHHHcCCcccccc---c-cCceeEEEEEECCCCcEEEEEecCCC
Confidence 88 666 88999884 4443 23333432211100 1 12346899999999999999998765
No 39
>PRK15000 peroxidase; Provisional
Probab=99.89 E-value=8.6e-23 Score=159.24 Aligned_cols=142 Identities=13% Similarity=0.221 Sum_probs=104.0
Q ss_pred CCCceecCeEEeCCCC--C---eecCCcc-CCCEEEEEEccc-CCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCC
Q 027311 64 QSKTSVHDFSVKDAKG--Q---DVDLSIY-KGKLLLIVNVAS-QCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQ 136 (225)
Q Consensus 64 ~~g~~~p~f~l~~~~G--~---~~~l~~~-~gk~vlv~F~~t-wC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~ 136 (225)
.+|+.+|+|++.+..| + .++++++ +||++||+||++ ||++|..|++.|++++++|+++|++|++||+|
T Consensus 3 ~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D----- 77 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFD----- 77 (200)
T ss_pred cCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-----
Confidence 4799999999998744 4 3466666 899999999984 99999999999999999999999999999998
Q ss_pred CCCCHHHHHHHH---HhhcC---CCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC
Q 027311 137 EPGDNEQIQEFA---CTRFK---AEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT 210 (225)
Q Consensus 137 ~~~~~~~~~~~~---~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~ 210 (225)
+....++|. .++.+ ++||+++ |.++. ..+.|+...... ++ ++|++||||++|+|++.+.+.
T Consensus 78 ---~~~~~~~w~~~~~~~~g~~~i~fplls--D~~~~-ia~~ygv~~~~~------g~-~~r~tfiID~~G~I~~~~~~~ 144 (200)
T PRK15000 78 ---SEFVHNAWRNTPVDKGGIGPVKYAMVA--DVKRE-IQKAYGIEHPDE------GV-ALRGSFLIDANGIVRHQVVND 144 (200)
T ss_pred ---CHHHHHHHHhhHHHhCCccccCceEEE--CCCcH-HHHHcCCccCCC------Cc-EEeEEEEECCCCEEEEEEecC
Confidence 555555553 12333 5899984 54433 444554322111 11 579999999999999987765
Q ss_pred CC----hhhHHHHHHhh
Q 027311 211 TS----PLSIEVVLECL 223 (225)
Q Consensus 211 ~~----~~~l~~~l~~l 223 (225)
.. .+++.+.|+++
T Consensus 145 ~~~gr~~~eilr~l~al 161 (200)
T PRK15000 145 LPLGRNIDEMLRMVDAL 161 (200)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 43 34555555543
No 40
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.89 E-value=1.4e-22 Score=162.64 Aligned_cols=145 Identities=16% Similarity=0.182 Sum_probs=108.2
Q ss_pred ccccCCCceecCeEEeC-CCCC--eecCCcc-CCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCC
Q 027311 60 TMASQSKTSVHDFSVKD-AKGQ--DVDLSIY-KGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFG 134 (225)
Q Consensus 60 ~~~~~~g~~~p~f~l~~-~~G~--~~~l~~~-~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~ 134 (225)
.....+|+.+|+|++.+ .+|+ .++++++ +||++|++|| ++|||+|..|++.+++++++++++|++|++||+|
T Consensus 65 ~~~~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~D--- 141 (261)
T PTZ00137 65 VTSSLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVD--- 141 (261)
T ss_pred cccccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC---
Confidence 34458999999999988 4664 6899998 8998888877 8999999999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHh------hcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcC
Q 027311 135 AQEPGDNEQIQEFACT------RFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYA 208 (225)
Q Consensus 135 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~ 208 (225)
+....++|... ..+++||++. |.+ ....+.|+.+... + ...|++||||++|+|++.+.
T Consensus 142 -----s~~~h~aw~~~~~~~~g~~~l~fPlLs--D~~-~~iakayGv~~~~-------g-~a~R~tFIID~dG~I~~~~~ 205 (261)
T PTZ00137 142 -----SPFSHKAWKELDVRQGGVSPLKFPLFS--DIS-REVSKSFGLLRDE-------G-FSHRASVLVDKAGVVKHVAV 205 (261)
T ss_pred -----CHHHHHHHHhhhhhhccccCcceEEEE--cCC-hHHHHHcCCCCcC-------C-ceecEEEEECCCCEEEEEEE
Confidence 55555555421 2578899994 443 3344555432110 1 24799999999999999874
Q ss_pred CCC----ChhhHHHHHHhh
Q 027311 209 PTT----SPLSIEVVLECL 223 (225)
Q Consensus 209 g~~----~~~~l~~~l~~l 223 (225)
... +.+++.+.|+.+
T Consensus 206 ~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 206 YDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred eCCCCCCCHHHHHHHHHHh
Confidence 322 445666666554
No 41
>PRK13189 peroxiredoxin; Provisional
Probab=99.89 E-value=1.8e-22 Score=159.76 Aligned_cols=143 Identities=18% Similarity=0.309 Sum_probs=105.9
Q ss_pred cCCCceecCeEEeCCCCCeecCCc-cCCCEEEE-EEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCC
Q 027311 63 SQSKTSVHDFSVKDAKGQDVDLSI-YKGKLLLI-VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD 140 (225)
Q Consensus 63 ~~~g~~~p~f~l~~~~G~~~~l~~-~~gk~vlv-~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~ 140 (225)
+.+|+.+|+|++.+.+|+ +++++ ++||+++| +||++|||+|..|++.|++++++|+++|++|++||+| +
T Consensus 9 ~~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D--------~ 79 (222)
T PRK13189 9 PLIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSID--------Q 79 (222)
T ss_pred ccCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECC--------C
Confidence 468999999999999985 77877 49996654 7789999999999999999999999999999999998 5
Q ss_pred HHHHHHHHH---hh--cCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC----
Q 027311 141 NEQIQEFAC---TR--FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT---- 211 (225)
Q Consensus 141 ~~~~~~~~~---~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~---- 211 (225)
.....+|.. ++ .+++||++. |.++ ...+.|+.+.... +-...|++||||++|+|++...+..
T Consensus 80 ~~~h~aw~~~~~~~~g~~i~fPlls--D~~~-~ia~~ygv~~~~~------~~~~~r~tfIID~~G~Ir~~~~~~~~~gr 150 (222)
T PRK13189 80 VFSHIKWVEWIKEKLGVEIEFPIIA--DDRG-EIAKKLGMISPGK------GTNTVRAVFIIDPKGIIRAILYYPQEVGR 150 (222)
T ss_pred HHHHHHHHHhHHHhcCcCcceeEEE--cCcc-HHHHHhCCCcccc------CCCceeEEEEECCCCeEEEEEecCCCCCC
Confidence 555555542 22 257899884 4443 3444564432111 1115799999999999998865433
Q ss_pred ChhhHHHHHHhh
Q 027311 212 SPLSIEVVLECL 223 (225)
Q Consensus 212 ~~~~l~~~l~~l 223 (225)
+.+++.+.|+++
T Consensus 151 ~~~eilr~l~al 162 (222)
T PRK13189 151 NMDEILRLVKAL 162 (222)
T ss_pred CHHHHHHHHHHh
Confidence 345676666654
No 42
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.89 E-value=6.5e-23 Score=152.83 Aligned_cols=130 Identities=18% Similarity=0.247 Sum_probs=97.3
Q ss_pred eecCeEEeCCCCCeecCCccC-CCEE-EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHH
Q 027311 68 SVHDFSVKDAKGQDVDLSIYK-GKLL-LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQ 145 (225)
Q Consensus 68 ~~p~f~l~~~~G~~~~l~~~~-gk~v-lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~ 145 (225)
.+|+|+++|.+|+.++++++. +|++ |++||++|||+|+.+++.|++++++++++|+++++|+.| +.+...
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~--------~~~~~~ 72 (149)
T cd02970 1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPE--------SPEKLE 72 (149)
T ss_pred CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCC--------CHHHHH
Confidence 379999999999999999974 4555 555569999999999999999999999889999999987 456666
Q ss_pred HHHHhhcCCCcceeeeecCCCCCchhhhhhccccC----------------CCCCCCccccceeEEEECCCCcEEEEcCC
Q 027311 146 EFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSK----------------GGLFGDSIKWNFSKFLVDKEGNVVERYAP 209 (225)
Q Consensus 146 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~----------------~~~~~~~v~~~P~~~lid~~G~I~~~~~g 209 (225)
+|. ++++.+||++. |.++. ..+.|+...... .+..+.....+|++||||++|+|++.+.|
T Consensus 73 ~~~-~~~~~~~p~~~--D~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 73 AFD-KGKFLPFPVYA--DPDRK-LYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred HHH-HhcCCCCeEEE--CCchh-HHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 777 78899999984 54433 233333221110 00011134468999999999999999876
No 43
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.89 E-value=1.1e-22 Score=154.08 Aligned_cols=120 Identities=16% Similarity=0.250 Sum_probs=95.4
Q ss_pred CCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHH
Q 027311 64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQ 143 (225)
Q Consensus 64 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~ 143 (225)
.+....|+|++. +|+.+++++++ ||+||++|||+|++++|.|++++++| +++|++|++|. +
T Consensus 50 ~~~~~~~~f~l~--dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~-------~--- 110 (181)
T PRK13728 50 TEKPAPRWFRLS--NGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDG-------Q--- 110 (181)
T ss_pred cCCCCCCccCCC--CCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCC-------C---
Confidence 345567788874 99999999997 77799999999999999999999998 49999999884 1
Q ss_pred HHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCc--cccceeEEEECCCCcEEE-EcCCCCChhhHHHHH
Q 027311 144 IQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDS--IKWNFSKFLVDKEGNVVE-RYAPTTSPLSIEVVL 220 (225)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--v~~~P~~~lid~~G~I~~-~~~g~~~~~~l~~~l 220 (225)
....||++ .|.........| + +.++|++||||++|+++. .+.|..+.+++++.|
T Consensus 111 --------~~~~fPv~--~dd~~~~~~~~~-------------g~~~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~~I 167 (181)
T PRK13728 111 --------GDTAFPEA--LPAPPDVMQTFF-------------PNIPVATPTTFLVNVNTLEALPLLQGATDAAGFMARM 167 (181)
T ss_pred --------CCCCCceE--ecCchhHHHHHh-------------CCCCCCCCeEEEEeCCCcEEEEEEECCCCHHHHHHHH
Confidence 12588887 332222233333 4 268999999999999974 799999999999999
Q ss_pred HhhhC
Q 027311 221 ECLCC 225 (225)
Q Consensus 221 ~~ll~ 225 (225)
+.+++
T Consensus 168 ~~ll~ 172 (181)
T PRK13728 168 DTVLQ 172 (181)
T ss_pred HHHHh
Confidence 98874
No 44
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.89 E-value=2e-22 Score=145.66 Aligned_cols=121 Identities=20% Similarity=0.323 Sum_probs=103.1
Q ss_pred cCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHH
Q 027311 70 HDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFAC 149 (225)
Q Consensus 70 p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~ 149 (225)
|+|++++.+|+.+++++++||+++|+||++||++|+.++|.+++++++ +.+++|++|. ++.+++.+++
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~------~~~~~~~~~~- 68 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-----YPVVSVALRS------GDDGAVARFM- 68 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-----CCEEEEEccC------CCHHHHHHHH-
Confidence 789999999999999999999999999999999999999999999876 6688888773 2678899998
Q ss_pred hhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHH
Q 027311 150 TRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVV 219 (225)
Q Consensus 150 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~ 219 (225)
++++++|+++. |.++. ..+.| ++.++|+++|+|++| |++++.|..+++.+.+.
T Consensus 69 ~~~~~~~~~~~--d~~~~-~~~~~-------------~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 69 QKKGYGFPVIN--DPDGV-ISARW-------------GVSVTPAIVIVDPGG-IVFVTTGVTSEWGLRLR 121 (123)
T ss_pred HHcCCCccEEE--CCCcH-HHHhC-------------CCCcccEEEEEcCCC-eEEEEeccCCHHHHHhh
Confidence 78889999873 43332 33333 888999999999999 99999999999888764
No 45
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.89 E-value=4.8e-23 Score=150.87 Aligned_cols=111 Identities=19% Similarity=0.261 Sum_probs=86.4
Q ss_pred CCC-CeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcC--CeEEEEEecCCCCCCCCCCHHHHHHHHHhhcC
Q 027311 77 AKG-QDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ--GLEILAFPCNQFGAQEPGDNEQIQEFACTRFK 153 (225)
Q Consensus 77 ~~G-~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~--~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~ 153 (225)
++| +++++++++||++||+||++||++|+.++|.+++++++++++ ++++++|++|. +.+++.+|+ ++++
T Consensus 4 ~~~~~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~-------~~~~~~~~~-~~~~ 75 (132)
T cd02964 4 LDGEGVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDR-------SEESFNEYF-SEMP 75 (132)
T ss_pred ccCCccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCC-------CHHHHHHHH-hcCC
Confidence 344 499999999999999999999999999999999999999875 79999999985 678888898 6666
Q ss_pred CCcceeeeecCC-CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCC
Q 027311 154 AEFPIFDKVDVN-GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAP 209 (225)
Q Consensus 154 ~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g 209 (225)
.|..+...+.. .....+.| ++.++|+++|||++|+|+++...
T Consensus 76 -~~~~~~~~d~~~~~~~~~~~-------------~v~~iPt~~lid~~G~iv~~~~~ 118 (132)
T cd02964 76 -PWLAVPFEDEELRELLEKQF-------------KVEGIPTLVVLKPDGDVVTTNAR 118 (132)
T ss_pred -CeEeeccCcHHHHHHHHHHc-------------CCCCCCEEEEECCCCCEEchhHH
Confidence 54443211100 11122223 88899999999999999977544
No 46
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.87 E-value=1.7e-21 Score=137.94 Aligned_cols=116 Identities=29% Similarity=0.537 Sum_probs=99.4
Q ss_pred CeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHh
Q 027311 71 DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACT 150 (225)
Q Consensus 71 ~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~ 150 (225)
+|++.+.+|+.+++++++||+++|.||++||+.|...++.+.++++++++.++.+++|++|. . +.+++++++ +
T Consensus 1 ~~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~----~--~~~~~~~~~-~ 73 (116)
T cd02966 1 DFSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDD----D--DPAAVKAFL-K 73 (116)
T ss_pred CccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCC----C--CHHHHHHHH-H
Confidence 57889999999999999999999999999999999999999999999987789999999984 0 389999999 7
Q ss_pred hcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCC
Q 027311 151 RFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAP 209 (225)
Q Consensus 151 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g 209 (225)
+++.+++++. |.. ....+.| ++.++|+++|+|++|++++++.|
T Consensus 74 ~~~~~~~~~~--~~~-~~~~~~~-------------~~~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 74 KYGITFPVLL--DPD-GELAKAY-------------GVRGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred HcCCCcceEE--cCc-chHHHhc-------------CcCccceEEEECCCCcEEEEecC
Confidence 7788888873 432 3334444 77789999999999999998765
No 47
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.87 E-value=1.1e-21 Score=153.21 Aligned_cols=131 Identities=15% Similarity=0.225 Sum_probs=99.6
Q ss_pred cCCCceecCeEEeC----CCCCeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCC
Q 027311 63 SQSKTSVHDFSVKD----AKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQE 137 (225)
Q Consensus 63 ~~~g~~~p~f~l~~----~~G~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~ 137 (225)
..+|+++|+|++.+ .+|+.++|++++||++||+|| ++||++|..+++.|++++++|+++|++|++||+|
T Consensus 6 ~~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d------ 79 (199)
T PTZ00253 6 AKINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMD------ 79 (199)
T ss_pred cccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCC------
Confidence 46899999999765 466899999999999999999 5799999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHh-h-----cCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC
Q 027311 138 PGDNEQIQEFACT-R-----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT 211 (225)
Q Consensus 138 ~~~~~~~~~~~~~-~-----~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~ 211 (225)
+.....+|... + .+++||++. |.+ ....+.|+.+.... ++ .+|++||||++|+|++...+..
T Consensus 80 --~~~~~~~~~~~~~~~~~~~~~~fpll~--D~~-~~ia~~ygv~~~~~------g~-~~r~~fiID~~G~i~~~~~~~~ 147 (199)
T PTZ00253 80 --SEYAHLQWTLQERKKGGLGTMAIPMLA--DKT-KSIARSYGVLEEEQ------GV-AYRGLFIIDPKGMLRQITVNDM 147 (199)
T ss_pred --CHHHHHHHHhChHhhCCccccccceEE--CcH-hHHHHHcCCcccCC------Cc-eEEEEEEECCCCEEEEEEecCC
Confidence 44444444311 1 147899984 443 33445564432211 11 3689999999999999876644
No 48
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.87 E-value=2.3e-22 Score=147.00 Aligned_cols=112 Identities=21% Similarity=0.307 Sum_probs=86.0
Q ss_pred EeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcC--CeEEEEEecCCCCCCCCCCHHHHHHHHHhh
Q 027311 74 VKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ--GLEILAFPCNQFGAQEPGDNEQIQEFACTR 151 (225)
Q Consensus 74 l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~--~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~ 151 (225)
+.+.+|+.+++++++||++||+||++||++|+.++|.+++++++++++ +++|++|++|. +.+++++++ ++
T Consensus 3 l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~-------~~~~~~~~~-~~ 74 (131)
T cd03009 3 LLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDR-------DEESFNDYF-SK 74 (131)
T ss_pred ccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCC-------CHHHHHHHH-Hc
Confidence 568899999999999999999999999999999999999999999865 69999999985 667788877 43
Q ss_pred cCCCcceeeeecCC-CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcC
Q 027311 152 FKAEFPIFDKVDVN-GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYA 208 (225)
Q Consensus 152 ~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~ 208 (225)
.+ +..+...+.+ .....+.| ++.++|+++|||++|+|+.+..
T Consensus 75 ~~--~~~~~~~~~~~~~~~~~~~-------------~v~~~P~~~lid~~G~i~~~~~ 117 (131)
T cd03009 75 MP--WLAVPFSDRERRSRLNRTF-------------KIEGIPTLIILDADGEVVTTDA 117 (131)
T ss_pred CC--eeEcccCCHHHHHHHHHHc-------------CCCCCCEEEEECCCCCEEcccH
Confidence 32 2211101100 01122222 8888999999999999997744
No 49
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.84 E-value=1.3e-20 Score=143.98 Aligned_cols=140 Identities=19% Similarity=0.298 Sum_probs=107.3
Q ss_pred CCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCC-CChHhHHHHHHHHHHHhcC--CeEEEEEecCCCCCCCCCCH
Q 027311 65 SKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCG-LTNSNYTELSQLYDKYKNQ--GLEILAFPCNQFGAQEPGDN 141 (225)
Q Consensus 65 ~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~-~C~~~~~~l~~l~~~~~~~--~~~iv~Is~d~~~~~~~~~~ 141 (225)
.....|+|+++|++|+.+++++++||++||+|..|.|| .|...+..|.+++++++++ .++++.||+| ++.|++
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD----P~~DTp 103 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD----PERDTP 103 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS----TTTC-H
T ss_pred CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC----CCCCCH
Confidence 55678899999999999999999999999999999999 9999999999999998864 6999999999 788999
Q ss_pred HHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhcccc---CCCCCCCccccceeEEEECCCCcEEEEcCC
Q 027311 142 EQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFGDSIKWNFSKFLVDKEGNVVERYAP 209 (225)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~P~~~lid~~G~I~~~~~g 209 (225)
+.+++|+ ++++.++..+...........+.|+..... .....++.+.|...+|||||+|+|+..+.+
T Consensus 104 ~~L~~Y~-~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 104 EVLKKYA-KKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp HHHHHHH-HCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEECS
T ss_pred HHHHHHH-HhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEcc
Confidence 9999999 788888887754332222233333322211 112223478888999999999999988754
No 50
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.84 E-value=6.3e-21 Score=131.61 Aligned_cols=94 Identities=26% Similarity=0.375 Sum_probs=72.6
Q ss_pred CCEEEEEEcccCCCCChHhHHHHHHHHHHHh-cCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYK-NQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (225)
Q Consensus 89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~-~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (225)
||+++|+||++||++|+.++|.|.+++++|+ +.++++|+|+.|. +.+++++++ ++.+.++..+. ... .
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~-------~~~~~~~~~-~~~~~~~~~~~--~~~-~ 69 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDE-------DEEEWKKFL-KKNNFPWYNVP--FDD-D 69 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SS-------SHHHHHHHH-HTCTTSSEEEE--TTT-H
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCC-------CHHHHHHHH-HhcCCCceEEe--eCc-c
Confidence 8999999999999999999999999999999 5569999999985 788999998 66666666552 111 1
Q ss_pred CchhhhhhccccCCCCCCCccccceeEEEECCCCcE
Q 027311 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNV 203 (225)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I 203 (225)
....+.+.+ ++.++|+++|+|++|+|
T Consensus 70 ~~~~l~~~~----------~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 70 NNSELLKKY----------GINGIPTLVLLDPDGKI 95 (95)
T ss_dssp HHHHHHHHT----------T-TSSSEEEEEETTSBE
T ss_pred hHHHHHHHC----------CCCcCCEEEEECCCCCC
Confidence 122222222 89999999999999987
No 51
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.83 E-value=5.8e-20 Score=137.92 Aligned_cols=133 Identities=17% Similarity=0.246 Sum_probs=102.9
Q ss_pred CCceecCeEEeCCC---CCeecCCc-cCCCEEEEEEc-ccCCCCChHh-HHHHHHHHHHHhcCCe-EEEEEecCCCCCCC
Q 027311 65 SKTSVHDFSVKDAK---GQDVDLSI-YKGKLLLIVNV-ASQCGLTNSN-YTELSQLYDKYKNQGL-EILAFPCNQFGAQE 137 (225)
Q Consensus 65 ~g~~~p~f~l~~~~---G~~~~l~~-~~gk~vlv~F~-~twC~~C~~~-~~~l~~l~~~~~~~~~-~iv~Is~d~~~~~~ 137 (225)
+|+.+|+|++.+.+ |+.++|++ ++||++||.|+ +.|||.|..| ++.+++.++++++.|+ .|++||.|
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D------ 74 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVN------ 74 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECC------
Confidence 58999999999986 99999999 68887666655 8899999999 9999999999999999 69999998
Q ss_pred CCCHHHHHHHHHhhcCC--CcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCC
Q 027311 138 PGDNEQIQEFACTRFKA--EFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTS 212 (225)
Q Consensus 138 ~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~ 212 (225)
+....++|+ ++++. +||+++ |.+ ....+.|+.+..... .+.+......+|||| +|+|++.+.....
T Consensus 75 --~~~~~~~~~-~~~~~~~~f~lLs--D~~-~~~~~~ygv~~~~~~--~~~~~~~~R~~fiId-~g~I~~~~~~~~~ 142 (155)
T cd03013 75 --DPFVMKAWG-KALGAKDKIRFLA--DGN-GEFTKALGLTLDLSA--AGGGIRSKRYALIVD-DGKVKYLFVEEDP 142 (155)
T ss_pred --CHHHHHHHH-HhhCCCCcEEEEE--CCC-HHHHHHcCCCccccc--cCCcceeeeEEEEEC-CCEEEEEEEecCC
Confidence 788888898 77776 899985 443 345556665433210 111112356889999 6999998765443
No 52
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.82 E-value=2.5e-19 Score=140.17 Aligned_cols=150 Identities=20% Similarity=0.297 Sum_probs=119.1
Q ss_pred CeEEeCCCCCeecCCccCCCEEEEEEcccCCC-CChHhHHHHHHHHHHHh---cCCeEEEEEecCCCCCCCCCCHHHHHH
Q 027311 71 DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCG-LTNSNYTELSQLYDKYK---NQGLEILAFPCNQFGAQEPGDNEQIQE 146 (225)
Q Consensus 71 ~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~-~C~~~~~~l~~l~~~~~---~~~~~iv~Is~d~~~~~~~~~~~~~~~ 146 (225)
+|+++|++|+.+++.+++||+++|+|..|.|| .|..++..|.+++++.. ...++++.||+| +++|+++.+++
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvD----PerDtp~~lk~ 124 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVD----PERDTPEVLKK 124 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEEC----CCCCCHHHHHH
Confidence 89999999999999999999999999999999 99999999999999988 335999999999 79999999999
Q ss_pred HHHh-hcCCCcceeeeecCCCCCchhhhhhccc--cCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhh
Q 027311 147 FACT-RFKAEFPIFDKVDVNGDNAAPLYKHLKS--SKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL 223 (225)
Q Consensus 147 ~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~l 223 (225)
|+ + .+...|..+.......+...+.|+.... ...+..++.+.|...+|+||++|+++..+.+..+++++.+.|+++
T Consensus 125 Y~-~~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l 203 (207)
T COG1999 125 YA-ELNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKL 203 (207)
T ss_pred Hh-cccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHH
Confidence 98 4 3444455553222222333344444431 111113468899999999999999999988888899999999998
Q ss_pred hC
Q 027311 224 CC 225 (225)
Q Consensus 224 l~ 225 (225)
++
T Consensus 204 ~~ 205 (207)
T COG1999 204 LK 205 (207)
T ss_pred hh
Confidence 74
No 53
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=5.5e-19 Score=133.22 Aligned_cols=143 Identities=19% Similarity=0.330 Sum_probs=112.4
Q ss_pred cCCCceecCeEEeCC-CCC---eecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCC
Q 027311 63 SQSKTSVHDFSVKDA-KGQ---DVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQE 137 (225)
Q Consensus 63 ~~~g~~~p~f~l~~~-~G~---~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~ 137 (225)
..+|+++|+|+.... .|. +++++++.|||+|+.|| +...+.|..|+..+++.+++|+++|++|++||+|
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~D------ 76 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTD------ 76 (194)
T ss_pred cccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecC------
Confidence 368999999999998 774 99999999999999999 8899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHh---hcC---CCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC
Q 027311 138 PGDNEQIQEFACT---RFK---AEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT 211 (225)
Q Consensus 138 ~~~~~~~~~~~~~---~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~ 211 (225)
+.....+|... ..+ ++||++. |.++. ..+.|+.+..+. ++ ..-.+|||||+|+|++......
T Consensus 77 --s~fsH~aW~~~~~~~~gi~~i~~Pmia--D~~~~-vs~~ygvl~~~~------g~-a~R~~FIIDp~g~ir~~~v~~~ 144 (194)
T COG0450 77 --SVFSHKAWKATIREAGGIGKIKFPMIA--DPKGE-IARAYGVLHPEE------GL-ALRGTFIIDPDGVIRHILVNPL 144 (194)
T ss_pred --cHHHHHHHHhcHHhcCCccceecceEE--cCchh-HHHHcCCcccCC------Cc-ceeEEEEECCCCeEEEEEEecC
Confidence 67777777533 455 6899984 54444 456677665432 22 3457899999999998855433
Q ss_pred ----ChhhHHHHHHhh
Q 027311 212 ----SPLSIEVVLECL 223 (225)
Q Consensus 212 ----~~~~l~~~l~~l 223 (225)
+.+++...|++|
T Consensus 145 ~iGRn~dEilR~idAl 160 (194)
T COG0450 145 TIGRNVDEILRVIDAL 160 (194)
T ss_pred CCCcCHHHHHHHHHHH
Confidence 345666666654
No 54
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.81 E-value=1.7e-19 Score=134.51 Aligned_cols=109 Identities=15% Similarity=0.238 Sum_probs=78.3
Q ss_pred CCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcce
Q 027311 79 GQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPI 158 (225)
Q Consensus 79 G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (225)
|+.++++++ .||+||++||++|++++|.|+++++++ ++.|++|++|+ .. . + .||.
T Consensus 44 G~~~~l~~~----~lvnFWAsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~-------~~--~-----~----~fp~ 98 (153)
T TIGR02738 44 GRHANQDDY----ALVFFYQSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDG-------QG--L-----T----GFPD 98 (153)
T ss_pred chhhhcCCC----EEEEEECCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCC-------Cc--c-----c----cccc
Confidence 666666554 499999999999999999999999988 38899999874 11 0 1 3443
Q ss_pred eeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcE-EEEcCCCCChhhHHHHHHhhh
Q 027311 159 FDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNV-VERYAPTTSPLSIEVVLECLC 224 (225)
Q Consensus 159 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I-~~~~~g~~~~~~l~~~l~~ll 224 (225)
. .+.+.......|.. +++.++|++||||++|++ +.++.|..+.+++++.|+++|
T Consensus 99 ~--~~~~~~~~~~~~~~----------~~v~~iPTt~LID~~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 99 P--LPATPEVMQTFFPN----------PRPVVTPATFLVNVNTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred c--cCCchHHHHHHhcc----------CCCCCCCeEEEEeCCCCEEEEEeecccCHHHHHHHHHHhC
Confidence 3 22222111122210 156789999999999886 457889999999999998875
No 55
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=99.76 E-value=7.5e-18 Score=117.51 Aligned_cols=106 Identities=64% Similarity=1.129 Sum_probs=98.2
Q ss_pred cCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHH
Q 027311 70 HDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFAC 149 (225)
Q Consensus 70 p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~ 149 (225)
.+|++.|.+|+.++|++++||++||.-.||.|+.-. ....|++++++|+++|++|+++..++++.+|+++.+++++++.
T Consensus 2 Ydf~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~~ 80 (108)
T PF00255_consen 2 YDFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFCK 80 (108)
T ss_dssp GGSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHHC
T ss_pred cceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHHH
Confidence 589999999999999999999999999999999888 9999999999999999999999999999999999999999997
Q ss_pred hhcCCCcceeeeecCCCCCchhhhhhc
Q 027311 150 TRFKAEFPIFDKVDVNGDNAAPLYKHL 176 (225)
Q Consensus 150 ~~~~~~~~~~~~~d~~~~~~~~~~~~~ 176 (225)
.+++.+||++...+..|...+.+|+++
T Consensus 81 ~~~~~~F~vf~ki~VnG~~ahPly~~L 107 (108)
T PF00255_consen 81 EKFGVTFPVFEKIDVNGPDAHPLYKYL 107 (108)
T ss_dssp HCHT-SSEEBS-BBSSSTTB-HHHHHH
T ss_pred hccCCcccceEEEEecCCCCcHHHHHh
Confidence 778999999999999999999999876
No 56
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.75 E-value=4.5e-18 Score=125.82 Aligned_cols=107 Identities=15% Similarity=0.198 Sum_probs=84.8
Q ss_pred EeCCCCCeecCCc--cCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhh
Q 027311 74 VKDAKGQDVDLSI--YKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTR 151 (225)
Q Consensus 74 l~~~~G~~~~l~~--~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~ 151 (225)
+.+++++...+++ .+||++||+||++||++|+.++|.+.+++++++++ +.++.|++|. + ...+.+
T Consensus 3 ~~~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~-~~~v~v~vd~-------~--~~~~~~--- 69 (142)
T cd02950 3 LEQLAASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ-VNFVMLNVDN-------P--KWLPEI--- 69 (142)
T ss_pred hHHHhhccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC-eeEEEEEcCC-------c--ccHHHH---
Confidence 3455555555554 37999999999999999999999999999999765 8899998873 1 111111
Q ss_pred cCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311 152 FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC 225 (225)
Q Consensus 152 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~ 225 (225)
..| +|.++|+++++|++|+++.+..|..+.+++++.|+++++
T Consensus 70 -------------------~~~-------------~V~~iPt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 70 -------------------DRY-------------RVDGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred -------------------HHc-------------CCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHHc
Confidence 112 788899999999999999999999988999999998863
No 57
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.69 E-value=1.6e-16 Score=116.37 Aligned_cols=115 Identities=17% Similarity=0.255 Sum_probs=95.3
Q ss_pred eEEeCCCCCeecCC-ccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcC--CeEEEEEecCCCCCCCCCCHHHHHHHH
Q 027311 72 FSVKDAKGQDVDLS-IYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ--GLEILAFPCNQFGAQEPGDNEQIQEFA 148 (225)
Q Consensus 72 f~l~~~~G~~~~l~-~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~--~~~iv~Is~d~~~~~~~~~~~~~~~~~ 148 (225)
..+...+|..+..+ .++||+|.++|-|.|||+|+...|.|.++|++.++. .++||.||.|. +.+++.+|.
T Consensus 15 ~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~-------~~~~~~~y~ 87 (157)
T KOG2501|consen 15 NRLRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDR-------DEESLDEYM 87 (157)
T ss_pred CeeeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCC-------CHHHHHHHH
Confidence 56788889888888 479999999999999999999999999999999865 49999999997 888999998
Q ss_pred HhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEc
Q 027311 149 CTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERY 207 (225)
Q Consensus 149 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~ 207 (225)
.+++.+|..+...|...+.....| .+.++|+..+++++|+++...
T Consensus 88 -~~~~~~W~~iPf~d~~~~~l~~ky-------------~v~~iP~l~i~~~dG~~v~~d 132 (157)
T KOG2501|consen 88 -LEHHGDWLAIPFGDDLIQKLSEKY-------------EVKGIPALVILKPDGTVVTED 132 (157)
T ss_pred -HhcCCCeEEecCCCHHHHHHHHhc-------------ccCcCceeEEecCCCCEehHh
Confidence 777888887743333333344444 899999999999999988664
No 58
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=99.68 E-value=2.6e-16 Score=122.76 Aligned_cols=148 Identities=18% Similarity=0.238 Sum_probs=110.9
Q ss_pred cCeEEeCCCCCeecCCccCCCEEEEEEcccCCC-CChHhHHHHHHHHHHHhcC-C--eEEEEEecCCCCCCCCCCHHHHH
Q 027311 70 HDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCG-LTNSNYTELSQLYDKYKNQ-G--LEILAFPCNQFGAQEPGDNEQIQ 145 (225)
Q Consensus 70 p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~-~C~~~~~~l~~l~~~~~~~-~--~~iv~Is~d~~~~~~~~~~~~~~ 145 (225)
-+|+|.|.+|+.++-.+++|||+|++|-.|+|| .|..|+..|.++.++..++ + +..|.|++| +++|+.+.++
T Consensus 120 GpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvD----PeRD~~~~~~ 195 (280)
T KOG2792|consen 120 GPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVD----PERDSVEVVA 195 (280)
T ss_pred CceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeC----cccCCHHHHH
Confidence 579999999999999999999999999999999 9999999999999988755 2 447899999 7999999999
Q ss_pred HHHHhhcCCCcceeeeecCCCCCchhhhhhcccc-CCC-CCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHh
Q 027311 146 EFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSS-KGG-LFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLEC 222 (225)
Q Consensus 146 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~-~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ 222 (225)
+|+ ++++...--+...-..-..+.+.|+..-+. +.+ ...|=|.+.=..|||||+|..+..+.-.-+++++.+.|.+
T Consensus 196 eY~-~eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~ 273 (280)
T KOG2792|consen 196 EYV-SEFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILK 273 (280)
T ss_pred HHH-HhcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHH
Confidence 999 776654433322111112233344432222 222 2235677777889999999999777666677777776654
No 59
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.67 E-value=4.8e-16 Score=108.83 Aligned_cols=90 Identities=14% Similarity=0.155 Sum_probs=69.2
Q ss_pred ccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCC
Q 027311 86 IYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN 165 (225)
Q Consensus 86 ~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 165 (225)
+.+||++||+||++||++|+.++|.++++.+++ .++.++.|+.|. + ....+++ ++
T Consensus 12 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~-------~-~~~~~l~-~~-------------- 66 (103)
T cd02985 12 KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDE-------N-DSTMELC-RR-------------- 66 (103)
T ss_pred HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCC-------C-hHHHHHH-HH--------------
Confidence 346999999999999999999999999999999 348999999873 2 2222332 21
Q ss_pred CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHh
Q 027311 166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLEC 222 (225)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ 222 (225)
| +|.++|+++++ ++|+++.++.|.. ++++.+.+.+
T Consensus 67 -------~-------------~V~~~Pt~~~~-~~G~~v~~~~G~~-~~~l~~~~~~ 101 (103)
T cd02985 67 -------E-------------KIIEVPHFLFY-KDGEKIHEEEGIG-PDELIGDVLY 101 (103)
T ss_pred -------c-------------CCCcCCEEEEE-eCCeEEEEEeCCC-HHHHHHHHHh
Confidence 2 77889996666 9999999999944 6677776643
No 60
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.4e-15 Score=110.50 Aligned_cols=90 Identities=16% Similarity=0.217 Sum_probs=76.9
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (225)
.++||+|+|||+||++|+...|.|+++..+|.++ +.+..|++|+ ..+-. .
T Consensus 60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~-~k~~kvdtD~-------~~ela-----~----------------- 109 (150)
T KOG0910|consen 60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK-FKLYKVDTDE-------HPELA-----E----------------- 109 (150)
T ss_pred cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe-EEEEEEcccc-------ccchH-----h-----------------
Confidence 4679999999999999999999999999999776 9999999884 11111 1
Q ss_pred CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC 225 (225)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~ 225 (225)
-| +|.++|+++++ ++|..+.+..|..+.+.+.+.|+++++
T Consensus 110 ----~Y-------------~I~avPtvlvf-knGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 110 ----DY-------------EISAVPTVLVF-KNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred ----hc-------------ceeeeeEEEEE-ECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 13 78889998888 889999999999999999999999874
No 61
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3.5e-15 Score=109.04 Aligned_cols=144 Identities=20% Similarity=0.341 Sum_probs=106.1
Q ss_pred ccccCCCceecCeEEeCCCCCeecCCccCCC-EEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCC
Q 027311 60 TMASQSKTSVHDFSVKDAKGQDVDLSIYKGK-LLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQE 137 (225)
Q Consensus 60 ~~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk-~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~ 137 (225)
...+..|+.+|||+|.|.+|+.++|.++.|+ +||++|| +...|.|.++...+++-|++++..+.+|+++|.|
T Consensus 60 s~~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D------ 133 (211)
T KOG0855|consen 60 SLKVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGD------ 133 (211)
T ss_pred ceeeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccC------
Confidence 3467899999999999999999999999776 7888777 6788999999999999999999989999999998
Q ss_pred CCCHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChh-hH
Q 027311 138 PGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPL-SI 216 (225)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~-~l 216 (225)
+....++|. .+++++|.+++ |+.++ ....++..+..-++.. .-..||.|+.|...-.+....+|+ .+
T Consensus 134 --~s~sqKaF~-sKqnlPYhLLS--Dpk~e-~ik~lGa~k~p~gg~~------~Rsh~if~kg~~k~~ik~~~isPevsv 201 (211)
T KOG0855|consen 134 --DSASQKAFA-SKQNLPYHLLS--DPKNE-VIKDLGAPKDPFGGLP------GRSHYIFDKGGVKQLIKNNQISPEVSV 201 (211)
T ss_pred --chHHHHHhh-hhccCCeeeec--Ccchh-HHHHhCCCCCCCCCcc------cceEEEEecCCeEEEEEecccCccccH
Confidence 667778887 88899999984 44443 3333322221112222 226688888876665555555554 34
Q ss_pred HHHHH
Q 027311 217 EVVLE 221 (225)
Q Consensus 217 ~~~l~ 221 (225)
.+.++
T Consensus 202 d~a~k 206 (211)
T KOG0855|consen 202 DEALK 206 (211)
T ss_pred HHHHH
Confidence 44443
No 62
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.62 E-value=3.5e-15 Score=105.85 Aligned_cols=91 Identities=11% Similarity=0.020 Sum_probs=74.7
Q ss_pred ccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCC
Q 027311 86 IYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN 165 (225)
Q Consensus 86 ~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 165 (225)
..+|++++|.||++||++|+...|.+.++.+++++.++.+..|++|. ...+ + ++
T Consensus 21 ~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~--------~~~l---~-~~-------------- 74 (111)
T cd02963 21 KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH--------ERRL---A-RK-------------- 74 (111)
T ss_pred ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc--------cHHH---H-HH--------------
Confidence 34689999999999999999999999999999987678899888762 1111 1 11
Q ss_pred CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhh
Q 027311 166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL 223 (225)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~l 223 (225)
| +|.++|+++++ ++|+++.+..|..+.+++.+.|++|
T Consensus 75 -------~-------------~V~~~Pt~~i~-~~g~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 75 -------L-------------GAHSVPAIVGI-INGQVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred -------c-------------CCccCCEEEEE-ECCEEEEEecCCCCHHHHHHHHhcC
Confidence 2 78889999999 5999999999988888999888765
No 63
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.60 E-value=8.1e-15 Score=106.14 Aligned_cols=104 Identities=15% Similarity=0.243 Sum_probs=75.8
Q ss_pred CC-CEEEEEEcccCCCCChHhHHHHH---HHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeec
Q 027311 88 KG-KLLLIVNVASQCGLTNSNYTELS---QLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVD 163 (225)
Q Consensus 88 ~g-k~vlv~F~~twC~~C~~~~~~l~---~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 163 (225)
+| |+++|.||++||++|+...+.+. ++.+.+++ ++.++.|++|. +. ....| +.. .
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~-------~~-~~~~~---------~~~---~ 70 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDG-------DK-EVTDF---------DGE---A 70 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccC-------Cc-eeecc---------CCC---C
Confidence 57 99999999999999999999885 56666664 58899998873 11 11111 100 0
Q ss_pred CCCCCchhhhhhccccCCCCCCCccccceeEEEECCC-CcEEEEcCCCCChhhHHHHHHhhhC
Q 027311 164 VNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKE-GNVVERYAPTTSPLSIEVVLECLCC 225 (225)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~-G~I~~~~~g~~~~~~l~~~l~~ll~ 225 (225)
.........| ++.++|+++++|++ |+++.+..|..+.+++.+.|+.+++
T Consensus 71 ~~~~~l~~~~-------------~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 71 LSEKELARKY-------------RVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred ccHHHHHHHc-------------CCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 0111122222 88899999999999 8999999999999999999988763
No 64
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.60 E-value=9.5e-15 Score=102.03 Aligned_cols=87 Identities=13% Similarity=0.162 Sum_probs=69.0
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (225)
.|++++|+||++||++|+..+|.++++++++++..+.++.++.| ..+. + ++
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d--------~~~~----~-~~---------------- 66 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD--------TIDT----L-KR---------------- 66 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC--------CHHH----H-HH----------------
Confidence 58899999999999999999999999999998666788888765 1111 1 11
Q ss_pred CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhh
Q 027311 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL 223 (225)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~l 223 (225)
| ++.++|+++++ ++|+++.+..|. +++.+.+.|++|
T Consensus 67 -----~-------------~v~~~Pt~~~~-~~g~~~~~~~G~-~~~~~~~~i~~~ 102 (102)
T cd02948 67 -----Y-------------RGKCEPTFLFY-KNGELVAVIRGA-NAPLLNKTITEL 102 (102)
T ss_pred -----c-------------CCCcCcEEEEE-ECCEEEEEEecC-ChHHHHHHHhhC
Confidence 2 77888986655 799999999885 678888888764
No 65
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.59 E-value=3e-15 Score=121.83 Aligned_cols=109 Identities=17% Similarity=0.141 Sum_probs=82.4
Q ss_pred CCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcc
Q 027311 78 KGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFP 157 (225)
Q Consensus 78 ~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (225)
.++...+++++|+++||+||++||++|+.++|.|++++++|+ +.|++|++|. ... ..||
T Consensus 155 ~~~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg---~~Vi~VsvD~-------~~~-----------~~fp 213 (271)
T TIGR02740 155 KQKDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG---IEVLPVSVDG-------GPL-----------PGFP 213 (271)
T ss_pred HHHHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC---cEEEEEeCCC-------Ccc-----------ccCC
Confidence 344577888999999999999999999999999999999984 8999999984 110 1244
Q ss_pred eeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCC-CcEEEEcCCCCChhhHHHHHHhhh
Q 027311 158 IFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKE-GNVVERYAPTTSPLSIEVVLECLC 224 (225)
Q Consensus 158 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~-G~I~~~~~g~~~~~~l~~~l~~ll 224 (225)
.. +.+.. ....| +|.++|++||+|++ |++.....|..+.++|.+.|..+.
T Consensus 214 ~~---~~d~~-la~~~-------------gV~~vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~~~a 264 (271)
T TIGR02740 214 NA---RPDAG-QAQQL-------------KIRTVPAVFLADPDPNQFTPIGFGVMSADELVDRILLAA 264 (271)
T ss_pred cc---cCCHH-HHHHc-------------CCCcCCeEEEEECCCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 43 22211 22222 89999999999995 566566778889999988887653
No 66
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.59 E-value=5.8e-15 Score=102.71 Aligned_cols=86 Identities=15% Similarity=0.137 Sum_probs=65.0
Q ss_pred CccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecC
Q 027311 85 SIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDV 164 (225)
Q Consensus 85 ~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 164 (225)
++++||+++|.||++||++|+.++|.++++.+++++ +.++.|..+. ....
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~--~~~~~vd~~~-------~~~~--------------------- 63 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ--IRHLAIEESS-------IKPS--------------------- 63 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc--CceEEEECCC-------CCHH---------------------
Confidence 357899999999999999999999999999999964 7777775431 0010
Q ss_pred CCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHH
Q 027311 165 NGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVV 219 (225)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~ 219 (225)
....| ++.++||++++++ | .+.++.|..+.+++.+.
T Consensus 64 ----l~~~~-------------~V~~~PT~~lf~~-g-~~~~~~G~~~~~~l~~f 99 (100)
T cd02999 64 ----LLSRY-------------GVVGFPTILLFNS-T-PRVRYNGTRTLDSLAAF 99 (100)
T ss_pred ----HHHhc-------------CCeecCEEEEEcC-C-ceeEecCCCCHHHHHhh
Confidence 11112 7888999999975 5 67889998877776654
No 67
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.58 E-value=1.6e-14 Score=99.55 Aligned_cols=86 Identities=15% Similarity=0.270 Sum_probs=69.5
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (225)
+|++++|+||++||++|+...|.++++.+.+++. +.++.|+.|. ..++ + ++
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~vd~~~--------~~~l---~-~~---------------- 61 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ-FVLAKVNCDA--------QPQI---A-QQ---------------- 61 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc-EEEEEEeccC--------CHHH---H-HH----------------
Confidence 5889999999999999999999999999999764 8888888763 1111 1 11
Q ss_pred CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHH
Q 027311 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLE 221 (225)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~ 221 (225)
| ++.++|++++++ +|+++.++.|..+.+++...|+
T Consensus 62 -----~-------------~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 62 -----F-------------GVQALPTVYLFA-AGQPVDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred -----c-------------CCCCCCEEEEEe-CCEEeeeecCCCCHHHHHHHhC
Confidence 2 777889999996 8999999999888888877653
No 68
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.55 E-value=2.8e-14 Score=99.97 Aligned_cols=91 Identities=13% Similarity=0.125 Sum_probs=71.5
Q ss_pred CCCEEEEEEcccCCCCChHhHHHH---HHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTEL---SQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDV 164 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l---~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 164 (225)
+||+++|.||++||++|+...+.+ .++.+.+++ ++.++.|+++. +.....+++ ++
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~~~~~~~~~-~~------------- 67 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTK-------NDPEITALL-KR------------- 67 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCC-------CCHHHHHHH-HH-------------
Confidence 589999999999999999998887 578888876 69999998763 222222222 11
Q ss_pred CCCCchhhhhhccccCCCCCCCccccceeEEEECC-CCcEEEEcCCCCChhhHHHHHH
Q 027311 165 NGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDK-EGNVVERYAPTTSPLSIEVVLE 221 (225)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~-~G~I~~~~~g~~~~~~l~~~l~ 221 (225)
| ++.++|+++++++ +|+++.++.|..+.+++.+.|+
T Consensus 68 --------~-------------~i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 68 --------F-------------GVFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred --------c-------------CCCCCCEEEEECCCCCCCCcccccccCHHHHHHHhC
Confidence 2 7788999999999 9999999999999888887763
No 69
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.55 E-value=2.3e-14 Score=100.92 Aligned_cols=79 Identities=9% Similarity=-0.034 Sum_probs=64.3
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (225)
.++++||+|||+||++|+...|.+.++.+++++. +.++.|++|. . .++. ++
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~-------~-~~la----~~---------------- 63 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDE-------V-PDFN----KM---------------- 63 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCC-------C-HHHH----HH----------------
Confidence 4679999999999999999999999999999765 7899999883 2 2221 11
Q ss_pred CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChh
Q 027311 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPL 214 (225)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~ 214 (225)
| +|.++||++++ ++|+++.+..|..+..
T Consensus 64 -----~-------------~V~~iPTf~~f-k~G~~v~~~~G~~~~~ 91 (114)
T cd02954 64 -----Y-------------ELYDPPTVMFF-FRNKHMKIDLGTGNNN 91 (114)
T ss_pred -----c-------------CCCCCCEEEEE-ECCEEEEEEcCCCCCc
Confidence 2 78889998888 7999999998876554
No 70
>PRK09381 trxA thioredoxin; Provisional
Probab=99.52 E-value=9.5e-14 Score=98.02 Aligned_cols=90 Identities=20% Similarity=0.237 Sum_probs=73.5
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (225)
.+++++|.||++||++|+...|.++++.+++++. +.+..|+.|. . ..+ . +
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~-~~~~~vd~~~-------~-~~~---~-~----------------- 69 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNIDQ-------N-PGT---A-P----------------- 69 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC-cEEEEEECCC-------C-hhH---H-H-----------------
Confidence 3779999999999999999999999999999865 8899998763 1 111 0 1
Q ss_pred CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC 225 (225)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~ 225 (225)
.| ++.++|+++++ ++|+++.+..|..+.++++..|+..|.
T Consensus 70 ----~~-------------~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~~~ 109 (109)
T PRK09381 70 ----KY-------------GIRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANLA 109 (109)
T ss_pred ----hC-------------CCCcCCEEEEE-eCCeEEEEecCCCCHHHHHHHHHHhcC
Confidence 12 67778998888 799999999999889999999987663
No 71
>PHA02278 thioredoxin-like protein
Probab=99.51 E-value=1e-13 Score=96.63 Aligned_cols=87 Identities=16% Similarity=0.256 Sum_probs=65.5
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (225)
+++++||+|||+||++|+...|.+.++.+++..+ +.++.|++|.. +.+..++. +
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~-~~~~~vdvd~~----~~d~~~l~----~----------------- 66 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIK-KPILTLNLDAE----DVDREKAV----K----------------- 66 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCC-ceEEEEECCcc----ccccHHHH----H-----------------
Confidence 5789999999999999999999999998886443 67888888730 00011111 1
Q ss_pred CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHH
Q 027311 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEV 218 (225)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~ 218 (225)
.| +|.++||.+++ ++|+++.+..|..+.+++.+
T Consensus 67 ----~~-------------~I~~iPT~i~f-k~G~~v~~~~G~~~~~~l~~ 99 (103)
T PHA02278 67 ----LF-------------DIMSTPVLIGY-KDGQLVKKYEDQVTPMQLQE 99 (103)
T ss_pred ----HC-------------CCccccEEEEE-ECCEEEEEEeCCCCHHHHHh
Confidence 12 78889998777 78999999999877766554
No 72
>PRK10996 thioredoxin 2; Provisional
Probab=99.50 E-value=8.6e-14 Score=102.58 Aligned_cols=89 Identities=12% Similarity=0.173 Sum_probs=72.7
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (225)
+||+++|+||++||++|+...+.+.++++++.+. +.++.|+.|. ..++ + ++
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~-v~~~~vd~~~--------~~~l---~-~~---------------- 101 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK-VRFVKVNTEA--------EREL---S-AR---------------- 101 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC-eEEEEEeCCC--------CHHH---H-Hh----------------
Confidence 5899999999999999999999999999998764 8888887652 1111 1 11
Q ss_pred CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC 224 (225)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll 224 (225)
| +|.++|+++++ ++|+++.++.|..+.+++++.|++++
T Consensus 102 -----~-------------~V~~~Ptlii~-~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 102 -----F-------------RIRSIPTIMIF-KNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred -----c-------------CCCccCEEEEE-ECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 2 77788998777 58999999999999999999998874
No 73
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.49 E-value=1.2e-13 Score=96.13 Aligned_cols=94 Identities=15% Similarity=0.223 Sum_probs=70.8
Q ss_pred CCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCc
Q 027311 77 AKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEF 156 (225)
Q Consensus 77 ~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (225)
++++.++..-.++++++|.||++||++|+...|.++++.+++++. +.+..|+.|. . .. .+ ++
T Consensus 6 l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~~~~vd~~~-------~-~~---~~-~~----- 67 (101)
T cd03003 6 LDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV-IRIGAVNCGD-------D-RM---LC-RS----- 67 (101)
T ss_pred cCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc-eEEEEEeCCc-------c-HH---HH-HH-----
Confidence 334444333345789999999999999999999999999999865 8899998873 1 11 11 11
Q ss_pred ceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHH
Q 027311 157 PIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEV 218 (225)
Q Consensus 157 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~ 218 (225)
| ++.++|+.+++ ++|+.+.++.|..+.+.+.+
T Consensus 68 ----------------~-------------~v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~ 99 (101)
T cd03003 68 ----------------Q-------------GVNSYPSLYVF-PSGMNPEKYYGDRSKESLVK 99 (101)
T ss_pred ----------------c-------------CCCccCEEEEE-cCCCCcccCCCCCCHHHHHh
Confidence 1 67778998888 78998888999887776654
No 74
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.48 E-value=3.4e-13 Score=93.83 Aligned_cols=86 Identities=15% Similarity=0.222 Sum_probs=66.2
Q ss_pred cCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCC
Q 027311 87 YKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNG 166 (225)
Q Consensus 87 ~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 166 (225)
.+|+ ++|.||++||++|+...|.++++.++++..++.+..|+.|. .. .+ + +
T Consensus 15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~-------~~-~~---~-~---------------- 65 (101)
T cd02994 15 LEGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ-------EP-GL---S-G---------------- 65 (101)
T ss_pred hCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC-------CH-hH---H-H----------------
Confidence 3666 57999999999999999999999998876568888887663 11 11 1 1
Q ss_pred CCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHH
Q 027311 167 DNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLE 221 (225)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~ 221 (225)
.| ++.++|+++++ ++|++ .++.|..+.+++.+.|+
T Consensus 66 -----~~-------------~i~~~Pt~~~~-~~g~~-~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 66 -----RF-------------FVTALPTIYHA-KDGVF-RRYQGPRDKEDLISFIE 100 (101)
T ss_pred -----Hc-------------CCcccCEEEEe-CCCCE-EEecCCCCHHHHHHHHh
Confidence 12 77888998887 88986 68888888888877765
No 75
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.9e-13 Score=109.57 Aligned_cols=89 Identities=15% Similarity=0.298 Sum_probs=76.7
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (225)
+-+||||+||++||++|+..+|.|.++..+|+.+ +.+..|++|. . ..+.
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~-f~LakvN~D~-------~-p~vA---------------------- 90 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK-FKLAKVNCDA-------E-PMVA---------------------- 90 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc-eEEEEecCCc-------c-hhHH----------------------
Confidence 4569999999999999999999999999999987 9999999983 1 1111
Q ss_pred CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC 224 (225)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll 224 (225)
..| +|.++|++|++ ++|+-+.-+.|..+.+++++.|++++
T Consensus 91 ---aqf-------------giqsIPtV~af-~dGqpVdgF~G~qPesqlr~~ld~~~ 130 (304)
T COG3118 91 ---AQF-------------GVQSIPTVYAF-KDGQPVDGFQGAQPESQLRQFLDKVL 130 (304)
T ss_pred ---HHh-------------CcCcCCeEEEe-eCCcCccccCCCCcHHHHHHHHHHhc
Confidence 112 89999999999 99999999999998889999999875
No 76
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.45 E-value=9.4e-14 Score=98.45 Aligned_cols=106 Identities=16% Similarity=0.197 Sum_probs=67.2
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHH---HHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLY---DKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDV 164 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~---~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 164 (225)
+||++++.||.+|||+|+...+.+.+.. ..+++ ++.++.++++. +......+. +..+...+..
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~----- 69 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNIDD-------SRDESEAVL-DFDGQKNVRL----- 69 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECESHS-------HHHHHHHHH-SHTCHSSCHH-----
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEecCC-------ccccccccc-ccccchhhhH-----
Confidence 5899999999999999998888887544 34433 48899898873 333333333 2222211111
Q ss_pred CCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHH
Q 027311 165 NGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVL 220 (225)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l 220 (225)
......+.| ++.++|+++++|++|+++.+..|..+++++.+.|
T Consensus 70 ~~~~l~~~~-------------~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 70 SNKELAQRY-------------GVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp HHHHHHHHT-------------T--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred HHHHHHHHc-------------CCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 001122222 8999999999999999999999999998887754
No 77
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.43 E-value=9.9e-13 Score=91.98 Aligned_cols=85 Identities=16% Similarity=0.161 Sum_probs=66.5
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (225)
.+++++|.||++||++|+...|.++++.+++++. +.+..|+.|. ..++ + ++
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~vd~~~--------~~~~---~-~~---------------- 68 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKGK-VKVGSVDCQK--------YESL---C-QQ---------------- 68 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEECCc--------hHHH---H-HH----------------
Confidence 4679999999999999999999999999999654 8888888762 2221 1 11
Q ss_pred CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCC-hhhHHHH
Q 027311 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTS-PLSIEVV 219 (225)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~-~~~l~~~ 219 (225)
| +|.++|+.+++++.|+.+.++.|..+ .+++.+.
T Consensus 69 -----~-------------~i~~~Pt~~~~~~g~~~~~~~~G~~~~~~~l~~~ 103 (104)
T cd03004 69 -----A-------------NIRAYPTIRLYPGNASKYHSYNGWHRDADSILEF 103 (104)
T ss_pred -----c-------------CCCcccEEEEEcCCCCCceEccCCCCCHHHHHhh
Confidence 1 77788999999777688899999775 6666543
No 78
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.43 E-value=4.4e-13 Score=93.22 Aligned_cols=82 Identities=21% Similarity=0.342 Sum_probs=63.7
Q ss_pred EEEEEEcccCCCCChHhHHHHHHHHHHHhc--CCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCC
Q 027311 91 LLLIVNVASQCGLTNSNYTELSQLYDKYKN--QGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN 168 (225)
Q Consensus 91 ~vlv~F~~twC~~C~~~~~~l~~l~~~~~~--~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 168 (225)
+++|.||++||++|+...|.++++++++++ .++.++.|..+. ...+ + +
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~--------~~~~---~-~------------------ 67 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ--------HREL---C-S------------------ 67 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC--------Chhh---H-h------------------
Confidence 599999999999999999999999999976 358888887652 1111 1 1
Q ss_pred chhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHH
Q 027311 169 AAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVV 219 (225)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~ 219 (225)
.| ++.++|+++++ ++|+.+.++.|..+.+++.+.
T Consensus 68 ---~~-------------~v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~ 101 (102)
T cd03005 68 ---EF-------------QVRGYPTLLLF-KDGEKVDKYKGTRDLDSLKEF 101 (102)
T ss_pred ---hc-------------CCCcCCEEEEE-eCCCeeeEeeCCCCHHHHHhh
Confidence 12 67778999999 789988899998887766654
No 79
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.43 E-value=1.1e-12 Score=91.94 Aligned_cols=88 Identities=13% Similarity=0.131 Sum_probs=65.4
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCC--eEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQG--LEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN 165 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~--~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 165 (225)
++++++|.||++||++|+...|.++++++++++.+ +.+..++.+. ... .
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~--------~~~---~------------------ 64 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA--------YSS---I------------------ 64 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc--------CHh---H------------------
Confidence 46799999999999999999999999999997543 6666666541 011 1
Q ss_pred CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhh
Q 027311 166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL 223 (225)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~l 223 (225)
.+.| ++.++|+.++++ +| ...++.|..+.+++.+.+++.
T Consensus 65 ----~~~~-------------~I~~~Pt~~l~~-~~-~~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 65 ----ASEF-------------GVRGYPTIKLLK-GD-LAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred ----Hhhc-------------CCccccEEEEEc-CC-CceeecCCCCHHHHHHHHHhh
Confidence 1112 788899999994 45 446788888888888887764
No 80
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.42 E-value=1.5e-12 Score=90.00 Aligned_cols=85 Identities=14% Similarity=0.280 Sum_probs=67.9
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (225)
.+|++++.||++||+.|+...+.++++.+++++ ++.++.|+.|. . .++ . ++
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~-------~-~~l---~-~~---------------- 62 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDE-------D-QEI---A-EA---------------- 62 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCC-------C-HHH---H-HH----------------
Confidence 578999999999999999999999999999875 48888888763 1 211 1 11
Q ss_pred CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHH
Q 027311 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVL 220 (225)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l 220 (225)
+ ++.++|+++++ ++|+++.+..|..+.+++.+.|
T Consensus 63 -----~-------------~v~~vPt~~i~-~~g~~v~~~~g~~~~~~~~~~l 96 (97)
T cd02949 63 -----A-------------GIMGTPTVQFF-KDKELVKEISGVKMKSEYREFI 96 (97)
T ss_pred -----C-------------CCeeccEEEEE-ECCeEEEEEeCCccHHHHHHhh
Confidence 1 67778999999 5799999999988887777665
No 81
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.42 E-value=1.7e-12 Score=94.98 Aligned_cols=90 Identities=10% Similarity=0.030 Sum_probs=69.0
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (225)
.+++|||+|||+||++|+...|.|.++.+++++. +.|+-|++|+ ..++. ++
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe--------~~dla----~~---------------- 72 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF-AVIYLVDITE--------VPDFN----TM---------------- 72 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCC--------CHHHH----HH----------------
Confidence 5789999999999999999999999999999776 8889999883 22222 22
Q ss_pred CchhhhhhccccCCCCCCCccccceeEEEECCCCc-EEEEcCC--------CCChhhHHHHHHhhh
Q 027311 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGN-VVERYAP--------TTSPLSIEVVLECLC 224 (225)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~-I~~~~~g--------~~~~~~l~~~l~~ll 224 (225)
| +|.+.|+++++=++|+ .+.+..| ..+.+++.+.++.++
T Consensus 73 -----y-------------~I~~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~ 120 (142)
T PLN00410 73 -----Y-------------ELYDPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
T ss_pred -----c-------------CccCCCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHH
Confidence 2 5555667775558888 8888888 456677877777654
No 82
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=3.9e-12 Score=93.97 Aligned_cols=127 Identities=17% Similarity=0.240 Sum_probs=95.7
Q ss_pred CCCceecCeEEeCC-CC--CeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311 64 QSKTSVHDFSVKDA-KG--QDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG 139 (225)
Q Consensus 64 ~~g~~~p~f~l~~~-~G--~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~ 139 (225)
.+..++|+|+-+.. +| +.++|++|+||+|++.|+ ..+.-+|..|.-.+.+.++++++.|.+|+++|+|
T Consensus 5 ~~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~D-------- 76 (196)
T KOG0852|consen 5 VVFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTD-------- 76 (196)
T ss_pred ccCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEecc--------
Confidence 34556688866553 44 689999999999999999 4566699999999999999999999999999999
Q ss_pred CHHHHHHHH---HhhcCC---CcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcC
Q 027311 140 DNEQIQEFA---CTRFKA---EFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYA 208 (225)
Q Consensus 140 ~~~~~~~~~---~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~ 208 (225)
+.....+|+ .++.|+ ++|+++ |.... ..+-|+.+....|-. .-..||||++|.++..-.
T Consensus 77 S~fshlAW~ntprk~gGlg~~~iPlls--D~~~~-IsrdyGvL~~~~G~~-------lRglfIId~~gi~R~it~ 141 (196)
T KOG0852|consen 77 SVFSHLAWINTPRKQGGLGPLNIPLLS--DLNHE-ISRDYGVLKEDEGIA-------LRGLFIIDPDGILRQITI 141 (196)
T ss_pred chhhhhhHhcCchhhCCcCccccceee--ccchh-hHHhcCceecCCCcc-------eeeeEEEccccceEEeee
Confidence 777778885 233344 489884 44433 445677776654322 236699999999988543
No 83
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.41 E-value=4e-12 Score=91.47 Aligned_cols=98 Identities=14% Similarity=0.117 Sum_probs=69.5
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (225)
.|+.++|+|+++|||+|+...|.|.++.++. ++.+..|++|.....+..+.+++.++. +++++..
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~---~~~~y~vdvd~~~~~~~~~~~~~~~~~-~~~~i~~----------- 86 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQT---KAPIYYIDSENNGSFEMSSLNDLTAFR-SRFGIPT----------- 86 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHhc---CCcEEEEECCCccCcCcccHHHHHHHH-HHcCCcc-----------
Confidence 4778999999999999999999999999882 367888888742211222333555655 3322211
Q ss_pred CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC-CChhhHHHHH
Q 027311 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT-TSPLSIEVVL 220 (225)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~-~~~~~l~~~l 220 (225)
++.++|+++++ ++|+.+.+..|. .+.++|++.+
T Consensus 87 -------------------~i~~~PT~v~~-k~Gk~v~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 87 -------------------SFMGTPTFVHI-TDGKQVSVRCGSSTTAQELQDIA 120 (122)
T ss_pred -------------------cCCCCCEEEEE-eCCeEEEEEeCCCCCHHHHHHHh
Confidence 56778998888 889999999884 4466666544
No 84
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.41 E-value=1.5e-12 Score=92.29 Aligned_cols=85 Identities=13% Similarity=0.066 Sum_probs=66.9
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (225)
.++++||.|||+||++|+...|.+.++.+++++. +.+..|+.|. + ..+. .++
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d~-------~-~~l~---~~~---------------- 79 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCWW-------P-QGKC---RKQ---------------- 79 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCC-------C-hHHH---HHh----------------
Confidence 5789999999999999999999999999999765 8889998773 1 1111 011
Q ss_pred CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHH
Q 027311 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVV 219 (225)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~ 219 (225)
| +|.++||..+. ++|+...++.|..+.+.+...
T Consensus 80 -----~-------------~I~~~PTl~lf-~~g~~~~~y~G~~~~~~i~~~ 112 (113)
T cd03006 80 -----K-------------HFFYFPVIHLY-YRSRGPIEYKGPMRAPYMEKF 112 (113)
T ss_pred -----c-------------CCcccCEEEEE-ECCccceEEeCCCCHHHHHhh
Confidence 2 67778998888 789888888898888777653
No 85
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.39 E-value=1.8e-12 Score=90.00 Aligned_cols=89 Identities=13% Similarity=0.115 Sum_probs=70.2
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcC-CeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ-GLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNG 166 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~-~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 166 (225)
+|++++|.||++||+.|+...+.++++.+.++.. ++.+..+..|. ..+ .. +
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--------~~~---~~-~---------------- 63 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA--------EKD---LA-S---------------- 63 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc--------hHH---HH-H----------------
Confidence 6899999999999999999999999999999765 37777776542 111 11 1
Q ss_pred CCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhh
Q 027311 167 DNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL 223 (225)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~l 223 (225)
.| ++.++|+.+++++++. +..+.|..+.++++..|++.
T Consensus 64 -----~~-------------~i~~~P~~~~~~~~~~-~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 64 -----RF-------------GVSGFPTIKFFPKGKK-PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred -----hC-------------CCCcCCEEEEecCCCc-ceeecCCCCHHHHHHHHHhc
Confidence 12 7778899999998887 67888888888898888764
No 86
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.39 E-value=2e-12 Score=91.34 Aligned_cols=87 Identities=15% Similarity=0.222 Sum_probs=66.7
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (225)
+||+++|.||++||++|+...|.+.++.+++++.++.+..|..|. +... ++
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~-------~~~~---~~------------------- 70 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG-------EQRE---FA------------------- 70 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc-------cchh---hH-------------------
Confidence 588999999999999999999999999999997679999998762 1111 11
Q ss_pred CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC-CChhhHHH
Q 027311 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT-TSPLSIEV 218 (225)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~-~~~~~l~~ 218 (225)
.+.| ++.++|++++++++|+....|.|. .+.+.+..
T Consensus 71 --~~~~-------------~v~~~Pti~~f~~~~~~~~~y~g~~~~~~~l~~ 107 (109)
T cd02993 71 --KEEL-------------QLKSFPTILFFPKNSRQPIKYPSEQRDVDSLLM 107 (109)
T ss_pred --Hhhc-------------CCCcCCEEEEEcCCCCCceeccCCCCCHHHHHh
Confidence 0112 677789999999888777788874 45665544
No 87
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.38 E-value=2.1e-12 Score=90.98 Aligned_cols=88 Identities=16% Similarity=0.203 Sum_probs=67.2
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (225)
.|++++|.||++||++|+...|.++++.+++++. +.++.|+.|. + +..+.+ +
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~-~~~~~v~~~~-------~--~~~~~~-~----------------- 68 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL-VQVAAVDCDE-------D--KNKPLC-G----------------- 68 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC-ceEEEEecCc-------c--ccHHHH-H-----------------
Confidence 4789999999999999999999999999999754 8889898763 0 001111 1
Q ss_pred CchhhhhhccccCCCCCCCccccceeEEEECCCC----cEEEEcCCCCChhhHHHHH
Q 027311 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEG----NVVERYAPTTSPLSIEVVL 220 (225)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G----~I~~~~~g~~~~~~l~~~l 220 (225)
.| ++.++|+++++++.| .+...+.|..+.+++.+.|
T Consensus 69 ----~~-------------~i~~~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 69 ----KY-------------GVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred ----Hc-------------CCCcCCEEEEEeCCCcccccccccccCccCHHHHHHHh
Confidence 12 778899999998886 3566788877777777665
No 88
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=7.4e-12 Score=90.50 Aligned_cols=128 Identities=18% Similarity=0.196 Sum_probs=97.2
Q ss_pred cccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311 61 MASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG 139 (225)
Q Consensus 61 ~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~ 139 (225)
..+++|+++|+|++.+.+.+.++++++.||..++..+ +-..|.|-.+...+++...++.+ +.++.||.|
T Consensus 16 ~~~~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~--~~Vl~IS~D-------- 85 (158)
T COG2077 16 NEPQVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN--TVVLCISMD-------- 85 (158)
T ss_pred CCCccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC--cEEEEEeCC--------
Confidence 3468999999999999999999999999997777655 66999999999999999988865 899999998
Q ss_pred CHHHHHHHHHhhcCCCc-ceeeeecCCCCCchhhhhhccccC--CCCCCCccccceeEEEECCCCcEEEEc
Q 027311 140 DNEQIQEFACTRFKAEF-PIFDKVDVNGDNAAPLYKHLKSSK--GGLFGDSIKWNFSKFLVDKEGNVVERY 207 (225)
Q Consensus 140 ~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~v~~~P~~~lid~~G~I~~~~ 207 (225)
.+-...+|+ ..+|+.- ..+ .|.......+.|+....+- .++..+ +.|++|.+|+|.+..
T Consensus 86 LPFAq~RfC-~aeGi~nv~~l--Sd~r~~~Fge~yGv~I~egpL~gLlAR------aV~V~De~g~V~y~e 147 (158)
T COG2077 86 LPFAQKRFC-GAEGIENVITL--SDFRDRAFGENYGVLINEGPLAGLLAR------AVFVLDENGKVTYSE 147 (158)
T ss_pred ChhHHhhhh-hhcCcccceEh--hhhhhhhhhHhhCEEeccccccCeeee------EEEEEcCCCcEEEEE
Confidence 788889999 6667764 333 3333333444454433322 133333 669999999999873
No 89
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=3.9e-12 Score=88.90 Aligned_cols=86 Identities=19% Similarity=0.295 Sum_probs=69.6
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (225)
.+|.+||+|+|+||++|+...|.+.++..+|.+ +.++.|++| . +...+ ++
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvd--------e---~~~~~-~~---------------- 69 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVD--------E---LEEVA-KE---------------- 69 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEecc--------c---CHhHH-Hh----------------
Confidence 469999999999999999999999999999987 999999987 2 33333 11
Q ss_pred CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhh
Q 027311 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL 223 (225)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~l 223 (225)
| ++..+||.+++ ++|+.+.+..|.. ++++++.+.+.
T Consensus 70 -----~-------------~V~~~PTf~f~-k~g~~~~~~vGa~-~~~l~~~i~~~ 105 (106)
T KOG0907|consen 70 -----F-------------NVKAMPTFVFY-KGGEEVDEVVGAN-KAELEKKIAKH 105 (106)
T ss_pred -----c-------------CceEeeEEEEE-ECCEEEEEEecCC-HHHHHHHHHhc
Confidence 1 78889998888 9999999999865 44777777653
No 90
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.36 E-value=6.2e-12 Score=86.96 Aligned_cols=88 Identities=19% Similarity=0.300 Sum_probs=71.1
Q ss_pred CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCC
Q 027311 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN 168 (225)
Q Consensus 89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 168 (225)
+++++|.||++||+.|+...+.++++.++++++ +.++.|..|. + ..+ . ++
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~vd~~~-------~-~~~---~-~~----------------- 63 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEGK-VKFVKLNVDE-------N-PDI---A-AK----------------- 63 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCC-eEEEEEECCC-------C-HHH---H-HH-----------------
Confidence 579999999999999999999999999988754 8999998763 1 111 1 11
Q ss_pred chhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311 169 AAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC 224 (225)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll 224 (225)
| ++.++|+.+++ ++|+++.+..|..+.+++...|++.+
T Consensus 64 ----~-------------~v~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 64 ----Y-------------GIRSIPTLLLF-KNGKEVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred ----c-------------CCCcCCEEEEE-eCCcEeeeecCCCCHHHHHHHHHhhC
Confidence 1 67778999999 78999999889888888999888754
No 91
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.34 E-value=1.3e-12 Score=93.42 Aligned_cols=47 Identities=11% Similarity=0.130 Sum_probs=36.6
Q ss_pred CCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311 84 LSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 84 l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d 131 (225)
.+..+||+++|+||++||++|+...|.+.+..+.... +..++.|.+|
T Consensus 14 ~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~~~fv~v~vd 60 (117)
T cd02959 14 EAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-SHNFVMVNLE 60 (117)
T ss_pred HHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-cCcEEEEEec
Confidence 3445789999999999999999999999997765543 2456666665
No 92
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.33 E-value=1.5e-11 Score=87.82 Aligned_cols=88 Identities=14% Similarity=0.178 Sum_probs=70.4
Q ss_pred CCEEEEEEcccCCCC--Ch--HhHHHHHHHHHHH-hcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeec
Q 027311 89 GKLLLIVNVASQCGL--TN--SNYTELSQLYDKY-KNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVD 163 (225)
Q Consensus 89 gk~vlv~F~~twC~~--C~--~~~~~l~~l~~~~-~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 163 (225)
..++|++||++||++ |+ ...|.+.++.+++ ++.++.+..|++|. . .++. ++
T Consensus 27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~-------~-~~La----~~------------ 82 (120)
T cd03065 27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK-------D-AKVA----KK------------ 82 (120)
T ss_pred CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC-------C-HHHH----HH------------
Confidence 459999999999988 99 7778888888887 23359999999883 2 2222 11
Q ss_pred CCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311 164 VNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC 224 (225)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll 224 (225)
| +|.++||.+++ ++|+++. +.|..+.+.+.+.|++|+
T Consensus 83 ---------~-------------~I~~iPTl~lf-k~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 83 ---------L-------------GLDEEDSIYVF-KDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred ---------c-------------CCccccEEEEE-ECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 2 88889999888 7899987 899999999999999886
No 93
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=3.5e-11 Score=88.99 Aligned_cols=148 Identities=16% Similarity=0.268 Sum_probs=103.7
Q ss_pred cCCCceecCeEEeCCCCCeecCCccCCC-EEEEE-EcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCC
Q 027311 63 SQSKTSVHDFSVKDAKGQDVDLSIYKGK-LLLIV-NVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD 140 (225)
Q Consensus 63 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk-~vlv~-F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~ 140 (225)
+..|+.+|+|+..+..|+ +.+.||.|. |.|++ -.+...|+|..|+..+..++.||.++|+..+++|+| +
T Consensus 6 l~lgd~~PNfea~Tt~g~-i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d--------~ 76 (224)
T KOG0854|consen 6 LRLGDTVPNFEADTTVGK-IKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVD--------D 76 (224)
T ss_pred ccccCcCCCccccccccc-eehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehh--------h
Confidence 468999999999888886 899998765 65553 348899999999999999999999999999999999 4
Q ss_pred HHHHHHHHH------hhc--CCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC--
Q 027311 141 NEQIQEFAC------TRF--KAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT-- 210 (225)
Q Consensus 141 ~~~~~~~~~------~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~-- 210 (225)
.+..+.|++ +.. ..+||++. |. ..+..-.+.++.....+..|-+ ...-..|+||++.+|+-...-.
T Consensus 77 vesH~~Wi~DIks~~~~~~~~~~yPIIa--D~-~rela~~l~MlD~~e~~~~~~~-~T~Ravfvi~pdkKirLs~lYP~t 152 (224)
T KOG0854|consen 77 VESHKDWIKDIKSYAKVKNHSVPYPIIA--DP-NRELAFLLNMLDPEEKKNIGDG-KTVRAVFVIDPDKKIRLSFLYPST 152 (224)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCCeec--CC-chhhhhhhcccCHhHcCCCCCC-ceEEEEEEECCCceEEEEEEcccc
Confidence 444444431 222 37888873 33 3444555666655432222212 1234779999999998764322
Q ss_pred --CChhhHHHHHHhh
Q 027311 211 --TSPLSIEVVLECL 223 (225)
Q Consensus 211 --~~~~~l~~~l~~l 223 (225)
-+.+++...|+.|
T Consensus 153 tGRN~dEiLRvidsL 167 (224)
T KOG0854|consen 153 TGRNFDEILRVIDSL 167 (224)
T ss_pred cCcCHHHHHHHHHHH
Confidence 2345677777665
No 94
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.33 E-value=5.7e-12 Score=88.78 Aligned_cols=85 Identities=19% Similarity=0.244 Sum_probs=63.1
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcC-----CeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeee
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ-----GLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKV 162 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~-----~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (225)
.+++++|.||++||++|+...|.++++.+++++. .+.+..|+.|. . .++ + ++
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~-------~-~~l---~-~~----------- 73 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK-------E-SDI---A-DR----------- 73 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC-------C-HHH---H-Hh-----------
Confidence 4689999999999999999999999999887532 37777787763 1 111 1 11
Q ss_pred cCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcE-EEEcCCCCChhhHHHH
Q 027311 163 DVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNV-VERYAPTTSPLSIEVV 219 (225)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I-~~~~~g~~~~~~l~~~ 219 (225)
| ++.++|++++. ++|++ ...+.|..+.+++.+.
T Consensus 74 ----------~-------------~v~~~Ptl~~~-~~g~~~~~~~~g~~~~~~l~~f 107 (108)
T cd02996 74 ----------Y-------------RINKYPTLKLF-RNGMMMKREYRGQRSVEALAEF 107 (108)
T ss_pred ----------C-------------CCCcCCEEEEE-eCCcCcceecCCCCCHHHHHhh
Confidence 2 77888999888 78884 4677787777766654
No 95
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.32 E-value=1.3e-11 Score=85.69 Aligned_cols=87 Identities=20% Similarity=0.343 Sum_probs=72.0
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (225)
.++++||.||++||++|+...|.+.++.+++++ ++.++.|..+. . .. .+ ++
T Consensus 16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~-------~-~~---l~-~~---------------- 66 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDE-------N-KE---LC-KK---------------- 66 (103)
T ss_dssp TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT-------S-HH---HH-HH----------------
T ss_pred cCCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhc-------c-ch---hh-hc----------------
Confidence 368999999999999999999999999999987 69999998763 2 11 11 21
Q ss_pred CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHh
Q 027311 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLEC 222 (225)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ 222 (225)
| ++.++|+.+++ ++|+...++.|..+.++|.+.|++
T Consensus 67 -----~-------------~v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 67 -----Y-------------GVKSVPTIIFF-KNGKEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp -----T-------------TCSSSSEEEEE-ETTEEEEEEESSSSHHHHHHHHHH
T ss_pred -----c-------------CCCCCCEEEEE-ECCcEEEEEECCCCHHHHHHHHHc
Confidence 2 77888998888 778888899999999999998875
No 96
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.32 E-value=4.7e-12 Score=88.25 Aligned_cols=87 Identities=20% Similarity=0.271 Sum_probs=63.3
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcC-CeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ-GLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNG 166 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~-~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 166 (225)
++++++|.||++||++|+...|.++++.+++++. .+.++.|..+. +.... .. +
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~------~~~~~---~~-~---------------- 69 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK------PEHDA---LK-E---------------- 69 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC------CccHH---HH-H----------------
Confidence 5779999999999999999999999999998743 36666676542 00111 11 1
Q ss_pred CCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHH
Q 027311 167 DNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVV 219 (225)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~ 219 (225)
.| ++.++|+.++. ++|+++.++.|..+.+++.+.
T Consensus 70 -----~~-------------~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~ 103 (104)
T cd02997 70 -----EY-------------NVKGFPTFKYF-ENGKFVEKYEGERTAEDIIEF 103 (104)
T ss_pred -----hC-------------CCccccEEEEE-eCCCeeEEeCCCCCHHHHHhh
Confidence 11 77778986655 689999999998887776554
No 97
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.31 E-value=1.1e-11 Score=97.83 Aligned_cols=89 Identities=13% Similarity=0.108 Sum_probs=69.1
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (225)
.+++++|.||++||++|+...|.++++.+++++. +.+..|..+. ..+ .. +
T Consensus 51 ~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~-v~~~~VD~~~--------~~~---l~-~----------------- 100 (224)
T PTZ00443 51 TTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ-VNVADLDATR--------ALN---LA-K----------------- 100 (224)
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC-eEEEEecCcc--------cHH---HH-H-----------------
Confidence 3579999999999999999999999999999864 7777665542 111 11 1
Q ss_pred CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC 224 (225)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll 224 (225)
.| +|.++|++++++ +|+++.+..|..+.+++.+.+.+.+
T Consensus 101 ----~~-------------~I~~~PTl~~f~-~G~~v~~~~G~~s~e~L~~fi~~~~ 139 (224)
T PTZ00443 101 ----RF-------------AIKGYPTLLLFD-KGKMYQYEGGDRSTEKLAAFALGDF 139 (224)
T ss_pred ----Hc-------------CCCcCCEEEEEE-CCEEEEeeCCCCCHHHHHHHHHHHH
Confidence 12 788899999997 7999888888888888888877653
No 98
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.31 E-value=1.3e-11 Score=91.91 Aligned_cols=81 Identities=16% Similarity=0.070 Sum_probs=62.4
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (225)
++++++|+||++||++|+...|.++++.+++++.+++++.|++|. .. ++. +++++.-
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~-------~~-~la----~~~~V~~----------- 102 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR-------FP-NVA----EKFRVST----------- 102 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC-------CH-HHH----HHcCcee-----------
Confidence 467999999999999999999999999999986679999999884 22 222 2222110
Q ss_pred CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCC
Q 027311 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAP 209 (225)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g 209 (225)
.| ++.++||+++. ++|+.+.+..|
T Consensus 103 ----~~-------------~v~~~PT~ilf-~~Gk~v~r~~G 126 (152)
T cd02962 103 ----SP-------------LSKQLPTIILF-QGGKEVARRPY 126 (152)
T ss_pred ----cC-------------CcCCCCEEEEE-ECCEEEEEEec
Confidence 01 56678998888 68999999886
No 99
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.28 E-value=1.8e-11 Score=85.80 Aligned_cols=43 Identities=12% Similarity=0.015 Sum_probs=39.4
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d 131 (225)
.+|+|||.|+++||++|+..-|.+.++.+++++. +.++.|.+|
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVD 55 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVD 55 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc-eEEEEEecc
Confidence 5899999999999999999999999999999755 888888877
No 100
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.28 E-value=1.6e-11 Score=109.91 Aligned_cols=97 Identities=14% Similarity=0.102 Sum_probs=73.7
Q ss_pred CccCCCEEEEEEcccCCCCChHhHHHH---HHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeee
Q 027311 85 SIYKGKLLLIVNVASQCGLTNSNYTEL---SQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDK 161 (225)
Q Consensus 85 ~~~~gk~vlv~F~~twC~~C~~~~~~l---~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (225)
+..+||+++|+||++||++|+...+.. .+++++++ ++.++.|++++ +.++..+.+ ++
T Consensus 470 a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~-------~~~~~~~l~-~~---------- 529 (571)
T PRK00293 470 AKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTA-------NNAEDVALL-KH---------- 529 (571)
T ss_pred HHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCC-------CChhhHHHH-HH----------
Confidence 445699999999999999999877764 56777774 48888888763 222223332 21
Q ss_pred ecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEE--EEcCCCCChhhHHHHHHhhhC
Q 027311 162 VDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVV--ERYAPTTSPLSIEVVLECLCC 225 (225)
Q Consensus 162 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~--~~~~g~~~~~~l~~~l~~ll~ 225 (225)
| ++.++|+++++|++|+++ .++.|..+.+++.+.|+++.+
T Consensus 530 -----------~-------------~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~~ 571 (571)
T PRK00293 530 -----------Y-------------NVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQP 571 (571)
T ss_pred -----------c-------------CCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhcC
Confidence 2 777889999999999984 688899999999999998754
No 101
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.28 E-value=2.9e-11 Score=83.27 Aligned_cols=83 Identities=13% Similarity=0.180 Sum_probs=61.6
Q ss_pred CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCC
Q 027311 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN 168 (225)
Q Consensus 89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 168 (225)
+++++|.||++||++|+...+.|+++.+++. .++.++.|..+. . .+ .. ++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~-~~i~~~~vd~~~-------~-~~---~~-~~----------------- 63 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAF-PSVLFLSIEAEE-------L-PE---IS-EK----------------- 63 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhC-CceEEEEEcccc-------C-HH---HH-Hh-----------------
Confidence 6899999999999999999999999999973 348888776441 1 11 11 11
Q ss_pred chhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHH
Q 027311 169 AAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVL 220 (225)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l 220 (225)
| ++.++|+++++ ++|+++.+..|.. ++++.+.|
T Consensus 64 ----~-------------~i~~~Pt~~~~-~~g~~~~~~~g~~-~~~l~~~~ 96 (97)
T cd02984 64 ----F-------------EITAVPTFVFF-RNGTIVDRVSGAD-PKELAKKV 96 (97)
T ss_pred ----c-------------CCccccEEEEE-ECCEEEEEEeCCC-HHHHHHhh
Confidence 2 67778998888 5899999988853 45555544
No 102
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.27 E-value=4.5e-11 Score=83.77 Aligned_cols=82 Identities=10% Similarity=0.108 Sum_probs=67.0
Q ss_pred CCCEEEEEEcccC--CCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCC
Q 027311 88 KGKLLLIVNVASQ--CGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN 165 (225)
Q Consensus 88 ~gk~vlv~F~~tw--C~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 165 (225)
.|.++||.||++| ||.|....|.+.++.++|+++ +.++.|++|+ .. ++. .+
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid~-------~~-~la----~~-------------- 78 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRAD-------EQ-ALA----AR-------------- 78 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECCC-------CH-HHH----HH--------------
Confidence 5679999999997 999999999999999999876 8888898874 22 222 11
Q ss_pred CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHH
Q 027311 166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217 (225)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~ 217 (225)
| +|.++||.+++ ++|+++.+..|..+.+++.
T Consensus 79 -------f-------------~V~sIPTli~f-kdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 79 -------F-------------GVLRTPALLFF-RDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred -------c-------------CCCcCCEEEEE-ECCEEEEEEeCccCHHHHh
Confidence 2 88889998888 7899999999988777664
No 103
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.26 E-value=2.3e-11 Score=84.82 Aligned_cols=87 Identities=16% Similarity=0.166 Sum_probs=65.9
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhc-CCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN-QGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNG 166 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~-~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 166 (225)
.+++++|.||++||++|+...+.+.++.++++. .++.++.|+.+. ... ..+ +
T Consensus 17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~-------~~~---~~~-~---------------- 69 (105)
T cd02998 17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADE-------ANK---DLA-K---------------- 69 (105)
T ss_pred CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCC-------cch---hhH-H----------------
Confidence 367999999999999999999999999999973 358888887652 011 111 1
Q ss_pred CCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHH
Q 027311 167 DNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVV 219 (225)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~ 219 (225)
.| ++.++|+++++++.|+....+.|..+.+++.+.
T Consensus 70 -----~~-------------~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~ 104 (105)
T cd02998 70 -----KY-------------GVSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKF 104 (105)
T ss_pred -----hC-------------CCCCcCEEEEEeCCCCCccccCCccCHHHHHhh
Confidence 12 677889999999887777788887777776654
No 104
>PTZ00051 thioredoxin; Provisional
Probab=99.26 E-value=3.8e-11 Score=82.92 Aligned_cols=80 Identities=14% Similarity=0.182 Sum_probs=59.7
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (225)
.+++++|.||++||++|+...+.+.++.+++. ++.++.|+.+. ... .+ ++
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~--~~~~~~vd~~~--------~~~---~~-~~---------------- 66 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT--KMVFVKVDVDE--------LSE---VA-EK---------------- 66 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC--CcEEEEEECcc--------hHH---HH-HH----------------
Confidence 47899999999999999999999999999875 37788787552 111 11 11
Q ss_pred CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHH
Q 027311 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217 (225)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~ 217 (225)
| ++.++|+++++ ++|+++.++.|. ..+++.
T Consensus 67 -----~-------------~v~~~Pt~~~~-~~g~~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 67 -----E-------------NITSMPTFKVF-KNGSVVDTLLGA-NDEALK 96 (98)
T ss_pred -----C-------------CCceeeEEEEE-eCCeEEEEEeCC-CHHHhh
Confidence 2 77778996655 899999999985 344443
No 105
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.24 E-value=1.7e-11 Score=84.42 Aligned_cols=86 Identities=16% Similarity=0.228 Sum_probs=66.1
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHh-cCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYK-NQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNG 166 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~-~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 166 (225)
++++++|.||++||+.|+...+.++++.+.++ +.++.++.|+.+. .. +.. ++
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~---~~~-~~--------------- 66 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA--------NN---DLC-SE--------------- 66 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc--------hH---HHH-Hh---------------
Confidence 46699999999999999999999999999995 4458888887651 11 111 11
Q ss_pred CCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHH
Q 027311 167 DNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVV 219 (225)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~ 219 (225)
| ++.++|++++++++|....++.|..+.+++.+.
T Consensus 67 ------~-------------~i~~~Pt~~~~~~~~~~~~~~~g~~~~~~i~~~ 100 (101)
T cd02961 67 ------Y-------------GVRGYPTIKLFPNGSKEPVKYEGPRTLESLVEF 100 (101)
T ss_pred ------C-------------CCCCCCEEEEEcCCCcccccCCCCcCHHHHHhh
Confidence 2 777789999999887888888887777666553
No 106
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.24 E-value=1e-10 Score=83.14 Aligned_cols=88 Identities=13% Similarity=0.245 Sum_probs=66.0
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (225)
+++.++|+||++||++|+...+.++++.+++ + .+.+..|..|. . .++. +
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~-~i~~~~vd~d~-------~-~~l~----~----------------- 69 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D-KLKLEIYDFDE-------D-KEKA----E----------------- 69 (113)
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C-ceEEEEEeCCc-------C-HHHH----H-----------------
Confidence 3567889999999999999999999999887 3 38888888763 1 1111 1
Q ss_pred CchhhhhhccccCCCCCCCccccceeEEEECCC---CcEEEEcCCCCChhhHHHHHHhhhC
Q 027311 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKE---GNVVERYAPTTSPLSIEVVLECLCC 225 (225)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~---G~I~~~~~g~~~~~~l~~~l~~ll~ 225 (225)
.| ++.++|++++.+.. |.+ ++.|..+..++.+.|+.++|
T Consensus 70 ----~~-------------~v~~vPt~~i~~~g~~~~~~--~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 70 ----KY-------------GVERVPTTIFLQDGGKDGGI--RYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred ----Hc-------------CCCcCCEEEEEeCCeecceE--EEEecCchHHHHHHHHHHHh
Confidence 12 78888998888653 333 56677778899999999875
No 107
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.22 E-value=9.8e-11 Score=81.45 Aligned_cols=85 Identities=13% Similarity=0.146 Sum_probs=64.0
Q ss_pred CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCC
Q 027311 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN 168 (225)
Q Consensus 89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 168 (225)
+++++|.||++||++|+...|.+.++.++++.. +.+..+..|. ..++. ++
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~-~~~~~id~~~--------~~~~~----~~----------------- 67 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI-VKVGAVDADV--------HQSLA----QQ----------------- 67 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-ceEEEEECcc--------hHHHH----HH-----------------
Confidence 567999999999999999999999999998764 8888887652 12111 11
Q ss_pred chhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHH
Q 027311 169 AAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVL 220 (225)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l 220 (225)
| ++.++|+++++++.......+.|..+.+++.+.+
T Consensus 68 ----~-------------~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 68 ----Y-------------GVRGFPTIKVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred ----C-------------CCCccCEEEEECCCCcceeecCCCCCHHHHHHHh
Confidence 1 7777899999976545566787877777776543
No 108
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.20 E-value=2.3e-10 Score=76.27 Aligned_cols=81 Identities=7% Similarity=0.128 Sum_probs=61.0
Q ss_pred EEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCCchh
Q 027311 92 LLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAP 171 (225)
Q Consensus 92 vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 171 (225)
.|..||++||++|+...+.++++.++++.. +.++.|+.+. ..+.. ++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~vd~~~-------~~~~~-----~~-------------------- 48 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA-VEVEYINVME-------NPQKA-----ME-------------------- 48 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCc-eEEEEEeCcc-------CHHHH-----HH--------------------
Confidence 456799999999999999999999998754 8888887653 22111 11
Q ss_pred hhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311 172 LYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC 224 (225)
Q Consensus 172 ~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll 224 (225)
| ++.++|+.++ +|++ ++.|..+.+++.+.|+++|
T Consensus 49 -~-------------~v~~vPt~~~---~g~~--~~~G~~~~~~l~~~l~~~~ 82 (82)
T TIGR00411 49 -Y-------------GIMAVPAIVI---NGDV--EFIGAPTKEELVEAIKKRL 82 (82)
T ss_pred -c-------------CCccCCEEEE---CCEE--EEecCCCHHHHHHHHHhhC
Confidence 2 7778899765 5664 5667778899999998765
No 109
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.17 E-value=1.2e-10 Score=81.01 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=42.8
Q ss_pred CCCCCeecCCc-cCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhc-CCeEEEEEecC
Q 027311 76 DAKGQDVDLSI-YKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN-QGLEILAFPCN 131 (225)
Q Consensus 76 ~~~G~~~~l~~-~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~-~~~~iv~Is~d 131 (225)
+++|+.+.-.- -.|++++|.||++||++|+...|.+.++.+++++ ..+.+..|+.+
T Consensus 4 ~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 61 (104)
T cd02995 4 VVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61 (104)
T ss_pred EEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc
Confidence 44455443221 2368999999999999999999999999999976 35788877765
No 110
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.16 E-value=4.1e-10 Score=81.05 Aligned_cols=86 Identities=6% Similarity=-0.062 Sum_probs=56.3
Q ss_pred ccCCCEEEEEEcccCCCCChHhHHH-H--HHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeee
Q 027311 86 IYKGKLLLIVNVASQCGLTNSNYTE-L--SQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKV 162 (225)
Q Consensus 86 ~~~gk~vlv~F~~twC~~C~~~~~~-l--~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (225)
.-+||+|+|+|+++||+.|+..-+. + .++.+.+.+ ++.+|-|..+. .++..+.+. +.
T Consensus 12 k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~-~fv~VkvD~~~-------~~~~~~~~~-~~----------- 71 (124)
T cd02955 12 RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE-NFVPIKVDREE-------RPDVDKIYM-NA----------- 71 (124)
T ss_pred HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC-CEEEEEEeCCc-------CcHHHHHHH-HH-----------
Confidence 3468999999999999999977653 2 256665543 47777776552 222212221 10
Q ss_pred cCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC
Q 027311 163 DVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT 210 (225)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~ 210 (225)
....| ++.++|+++++|++|++++...+.
T Consensus 72 ------~~~~~-------------~~~G~Pt~vfl~~~G~~~~~~~~~ 100 (124)
T cd02955 72 ------AQAMT-------------GQGGWPLNVFLTPDLKPFFGGTYF 100 (124)
T ss_pred ------HHHhc-------------CCCCCCEEEEECCCCCEEeeeeec
Confidence 01112 677889999999999999876543
No 111
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.15 E-value=2e-10 Score=81.55 Aligned_cols=72 Identities=13% Similarity=0.143 Sum_probs=57.0
Q ss_pred CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCC
Q 027311 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN 168 (225)
Q Consensus 89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 168 (225)
+++++|.||++||++|+...|.++++.+++++ +.++.|+.+. . ..+ ++
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~--v~f~~vd~~~--------~----~l~-~~----------------- 71 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE--TKFVKINAEK--------A----FLV-NY----------------- 71 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC--cEEEEEEchh--------h----HHH-Hh-----------------
Confidence 58999999999999999999999999999863 7888887652 1 221 21
Q ss_pred chhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC
Q 027311 169 AAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT 210 (225)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~ 210 (225)
| ++.++|+.+++ ++|+++.+..|.
T Consensus 72 ----~-------------~i~~~Pt~~~f-~~G~~v~~~~G~ 95 (113)
T cd02957 72 ----L-------------DIKVLPTLLVY-KNGELIDNIVGF 95 (113)
T ss_pred ----c-------------CCCcCCEEEEE-ECCEEEEEEecH
Confidence 2 77788987777 789999998773
No 112
>PTZ00102 disulphide isomerase; Provisional
Probab=99.12 E-value=1.8e-10 Score=101.38 Aligned_cols=105 Identities=16% Similarity=0.138 Sum_probs=78.4
Q ss_pred EeCCCCCeecCC-ccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcC-CeEEEEEecCCCCCCCCCCHHHHHHHHHhh
Q 027311 74 VKDAKGQDVDLS-IYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ-GLEILAFPCNQFGAQEPGDNEQIQEFACTR 151 (225)
Q Consensus 74 l~~~~G~~~~l~-~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~-~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~ 151 (225)
++.+.|+.+.-. .-.||+++|.||++||++|+...|.++++.+++++. .+.+..|+.|. .+.
T Consensus 359 v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~--------~~~-------- 422 (477)
T PTZ00102 359 VKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTA--------NET-------- 422 (477)
T ss_pred eEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCC--------Ccc--------
Confidence 555566655533 235899999999999999999999999999998764 36677676552 000
Q ss_pred cCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311 152 FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC 224 (225)
Q Consensus 152 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll 224 (225)
....| +++++|+.++++++|++..++.|..+.+.+.+.|++..
T Consensus 423 -----------------~~~~~-------------~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~ 465 (477)
T PTZ00102 423 -----------------PLEEF-------------SWSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHA 465 (477)
T ss_pred -----------------chhcC-------------CCcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcC
Confidence 00011 67788999999998887678899889999999888754
No 113
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.12 E-value=4.5e-10 Score=79.79 Aligned_cols=74 Identities=14% Similarity=0.069 Sum_probs=58.1
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (225)
++++++|.||++||++|+...|.+.++.+++++ +.++.|.+|. ..++. ++
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~--i~f~~Vd~~~--------~~~l~----~~---------------- 70 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE--TKFIKVNAEK--------APFLV----EK---------------- 70 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC--CEEEEEEccc--------CHHHH----HH----------------
Confidence 467999999999999999999999999999864 8888888763 12111 11
Q ss_pred CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC
Q 027311 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT 210 (225)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~ 210 (225)
| ++.++|+.+++ ++|+.+.+..|.
T Consensus 71 -----~-------------~v~~vPt~l~f-k~G~~v~~~~g~ 94 (113)
T cd02989 71 -----L-------------NIKVLPTVILF-KNGKTVDRIVGF 94 (113)
T ss_pred -----C-------------CCccCCEEEEE-ECCEEEEEEECc
Confidence 2 77788998877 789999887654
No 114
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.08 E-value=1.4e-09 Score=73.28 Aligned_cols=83 Identities=17% Similarity=0.271 Sum_probs=63.1
Q ss_pred CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCC
Q 027311 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN 168 (225)
Q Consensus 89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 168 (225)
+++++|.||++||+.|....+.++++.++ ..++.++.|+.+. . .++ . ++
T Consensus 10 ~~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~-------~-~~~---~-~~----------------- 58 (93)
T cd02947 10 AKPVVVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDE-------N-PEL---A-EE----------------- 58 (93)
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHH--CCCceEEEEECCC-------C-hhH---H-Hh-----------------
Confidence 37999999999999999999999999988 3458999888762 1 111 1 11
Q ss_pred chhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHH
Q 027311 169 AAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVL 220 (225)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l 220 (225)
| ++.++|+++++ ++|+++..+.|..+.+++.+.|
T Consensus 59 ----~-------------~v~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 59 ----Y-------------GVRSIPTFLFF-KNGKEVDRVVGADPKEELEEFL 92 (93)
T ss_pred ----c-------------CcccccEEEEE-ECCEEEEEEecCCCHHHHHHHh
Confidence 1 66778998888 5688888888877767776655
No 115
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.06 E-value=1.1e-09 Score=83.61 Aligned_cols=72 Identities=7% Similarity=0.078 Sum_probs=56.8
Q ss_pred CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCC
Q 027311 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN 168 (225)
Q Consensus 89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 168 (225)
+++|||+||++||++|+...|.|.++.++|.. +.++-|++|. . ..+ .+
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~--vkF~kVd~d~--------~----~l~-~~----------------- 130 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA--VKFCKIRASA--------T----GAS-DE----------------- 130 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCCC--eEEEEEeccc--------h----hhH-Hh-----------------
Confidence 45999999999999999999999999999863 8899888652 1 111 11
Q ss_pred chhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC
Q 027311 169 AAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT 210 (225)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~ 210 (225)
| ++.++|+++++ ++|+++.+..|.
T Consensus 131 ----f-------------~v~~vPTllly-k~G~~v~~~vG~ 154 (175)
T cd02987 131 ----F-------------DTDALPALLVY-KGGELIGNFVRV 154 (175)
T ss_pred ----C-------------CCCCCCEEEEE-ECCEEEEEEech
Confidence 2 67778998887 789999887653
No 116
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.04 E-value=1.2e-09 Score=94.66 Aligned_cols=92 Identities=16% Similarity=0.231 Sum_probs=67.8
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (225)
+++++||+||++||++|+...|.++++.+++++.++.++.|++|. +... .+.++
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~-------~~~~---~~~~~---------------- 423 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADG-------DQKE---FAKQE---------------- 423 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCC-------CccH---HHHHH----------------
Confidence 688999999999999999999999999999987778999998873 1111 11011
Q ss_pred CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcC-CCCChhhHHHHHHhh
Q 027311 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYA-PTTSPLSIEVVLECL 223 (225)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~-g~~~~~~l~~~l~~l 223 (225)
| +|.++|+++++.+.+.-...|. |..+.+.|...|+.|
T Consensus 424 -----~-------------~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 424 -----L-------------QLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred -----c-------------CCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 2 6777899888855443223454 467788888888765
No 117
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.02 E-value=1.8e-09 Score=83.67 Aligned_cols=81 Identities=16% Similarity=0.188 Sum_probs=62.2
Q ss_pred CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCC
Q 027311 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN 168 (225)
Q Consensus 89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 168 (225)
+++|||+||++||++|+...+.|+++.++|.. +.++.|.++. . . .+
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~--vkFvkI~ad~-----------~---~-~~----------------- 147 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFPD--TKFVKIISTQ-----------C---I-PN----------------- 147 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCCC--CEEEEEEhHH-----------h---H-hh-----------------
Confidence 46999999999999999999999999999963 8898887541 0 1 11
Q ss_pred chhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC-------CChhhHHHHHH
Q 027311 169 AAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT-------TSPLSIEVVLE 221 (225)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~-------~~~~~l~~~l~ 221 (225)
| ++.++|+++++ ++|+++.+..|. ++.++++..|.
T Consensus 148 ----~-------------~i~~lPTlliy-k~G~~v~~ivG~~~~gg~~~~~~~lE~~L~ 189 (192)
T cd02988 148 ----Y-------------PDKNLPTILVY-RNGDIVKQFIGLLEFGGMNTTMEDLEWLLV 189 (192)
T ss_pred ----C-------------CCCCCCEEEEE-ECCEEEEEEeCchhhCCCCCCHHHHHHHHH
Confidence 2 67778997777 899999998773 34455665554
No 118
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.02 E-value=1.1e-09 Score=78.09 Aligned_cols=44 Identities=11% Similarity=0.099 Sum_probs=39.9
Q ss_pred CCCEEEEEEcc-------cCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCC
Q 027311 88 KGKLLLIVNVA-------SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 132 (225)
Q Consensus 88 ~gk~vlv~F~~-------twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~ 132 (225)
+|++++|.||| +||++|+...|.++++.++++++ +.++.|.+|+
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~-v~fv~Vdvd~ 70 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPED-CVFIYCDVGD 70 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCC-CEEEEEEcCC
Confidence 58999999999 99999999999999999999744 8999999873
No 119
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=98.97 E-value=5e-09 Score=82.23 Aligned_cols=145 Identities=15% Similarity=0.204 Sum_probs=103.0
Q ss_pred cccccCCCceecCeEEeCCCCCe-ecCCccC--CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCC---
Q 027311 59 HTMASQSKTSVHDFSVKDAKGQD-VDLSIYK--GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ--- 132 (225)
Q Consensus 59 ~~~~~~~g~~~p~f~l~~~~G~~-~~l~~~~--gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~--- 132 (225)
.......|..+||..+.+.+|+. .++-|+. ++|+||+|.+-.||+=+..+..++++.++|.+. +.++.|-+.+
T Consensus 69 l~~~a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~-adFl~VYI~EAHp 147 (237)
T PF00837_consen 69 LFKEAKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV-ADFLIVYIEEAHP 147 (237)
T ss_pred cccceeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh-hheehhhHhhhCc
Confidence 34456899999999999999998 9999984 689999999889999999999999999999975 5555554432
Q ss_pred ----------CCCCCCCCHHH---HHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccce-eEEEEC
Q 027311 133 ----------FGAQEPGDNEQ---IQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNF-SKFLVD 198 (225)
Q Consensus 133 ----------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P-~~~lid 198 (225)
+..+.+.+.++ ..+.+ .++....|++ .|.........|+. .| ..|||
T Consensus 148 sDgW~~~~~~~~i~qh~sledR~~aA~~l-~~~~~~~pi~--vD~mdN~~~~~YgA---------------~PeRlyIi- 208 (237)
T PF00837_consen 148 SDGWAFGNNPYEIPQHRSLEDRLRAAKLL-KEEFPQCPIV--VDTMDNNFNKAYGA---------------LPERLYII- 208 (237)
T ss_pred CCCccCCCCceeecCCCCHHHHHHHHHHH-HhhCCCCCEE--EEccCCHHHHHhCC---------------CcceEEEE-
Confidence 12223333332 22223 2334678877 56665666666633 34 55777
Q ss_pred CCCcEEEEcCCC---CChhhHHHHHHhh
Q 027311 199 KEGNVVERYAPT---TSPLSIEVVLECL 223 (225)
Q Consensus 199 ~~G~I~~~~~g~---~~~~~l~~~l~~l 223 (225)
++|+|++..... -.++++++.|++.
T Consensus 209 ~~gkv~Y~Gg~GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 209 QDGKVVYKGGPGPFGYSPEELREWLEKY 236 (237)
T ss_pred ECCEEEEeCCCCCCcCCHHHHHHHHHhc
Confidence 699999875432 2567899998874
No 120
>PLN02309 5'-adenylylsulfate reductase
Probab=98.97 E-value=4.1e-09 Score=91.33 Aligned_cols=92 Identities=18% Similarity=0.254 Sum_probs=68.1
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (225)
+||++||.||++||++|+...|.+.++.++++..++.+..|+.|. ... ..+.++
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~-------~~~---~la~~~---------------- 417 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADG-------DQK---EFAKQE---------------- 417 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCC-------cch---HHHHhh----------------
Confidence 688999999999999999999999999999987789999998762 111 111011
Q ss_pred CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcC-CCCChhhHHHHHHhh
Q 027311 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYA-PTTSPLSIEVVLECL 223 (225)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~-g~~~~~~l~~~l~~l 223 (225)
| +|.++||++++.+...-...|. +.-+.+.|...|++|
T Consensus 418 -----~-------------~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 418 -----L-------------QLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred -----C-------------CCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 1 7778899999855443333454 456778888888775
No 121
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.96 E-value=4.2e-09 Score=69.33 Aligned_cols=36 Identities=8% Similarity=0.063 Sum_probs=30.5
Q ss_pred EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEe
Q 027311 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFP 129 (225)
Q Consensus 93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is 129 (225)
.|.||++|||+|....|.++++.++++.+ +.++-|.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~-~~~~~v~ 37 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGID-AEFEKVT 37 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCC-eEEEEeC
Confidence 37899999999999999999999998755 7776553
No 122
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.96 E-value=4.3e-09 Score=74.85 Aligned_cols=43 Identities=19% Similarity=0.225 Sum_probs=36.1
Q ss_pred CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcC--CeEEEEEecC
Q 027311 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ--GLEILAFPCN 131 (225)
Q Consensus 89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~--~~~iv~Is~d 131 (225)
+++++|.||++||++|+...|.++++.+++++. .+.+..|+.+
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~ 63 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCA 63 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEecc
Confidence 479999999999999999999999999998753 2667667653
No 123
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.95 E-value=2.2e-09 Score=93.90 Aligned_cols=90 Identities=17% Similarity=0.272 Sum_probs=69.3
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCC--eEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQG--LEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN 165 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~--~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 165 (225)
++++++|.||++||++|+...|.+.++.+.+.+.+ +.++.|..+. . .++ + ++
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-------~-~~l---~-~~-------------- 70 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE-------E-KDL---A-QK-------------- 70 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC-------c-HHH---H-Hh--------------
Confidence 57899999999999999999999999999887665 7788787652 1 111 1 11
Q ss_pred CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcE-EEEcCCCCChhhHHHHHHhhh
Q 027311 166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNV-VERYAPTTSPLSIEVVLECLC 224 (225)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I-~~~~~g~~~~~~l~~~l~~ll 224 (225)
| ++.++|+.+++ ++|+. +..+.|..+.+.+.+.+.+++
T Consensus 71 -------~-------------~i~~~Pt~~~~-~~g~~~~~~~~g~~~~~~l~~~i~~~~ 109 (462)
T TIGR01130 71 -------Y-------------GVSGYPTLKIF-RNGEDSVSDYNGPRDADGIVKYMKKQS 109 (462)
T ss_pred -------C-------------CCccccEEEEE-eCCccceeEecCCCCHHHHHHHHHHhc
Confidence 2 77778988887 56776 678888888888888887764
No 124
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.95 E-value=1.8e-08 Score=71.57 Aligned_cols=95 Identities=12% Similarity=0.097 Sum_probs=67.7
Q ss_pred CccCCCEEEEEEcccCCCCChHhHHH-H--HHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeee
Q 027311 85 SIYKGKLLLIVNVASQCGLTNSNYTE-L--SQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDK 161 (225)
Q Consensus 85 ~~~~gk~vlv~F~~twC~~C~~~~~~-l--~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (225)
+.-++|+++|+|+++||+.|...... + .++.+.+.+ ++..+.+.++ + .+..+++ .
T Consensus 13 Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~--------~-~e~~~~~-~----------- 70 (114)
T cd02958 13 AKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDID--------S-SEGQRFL-Q----------- 70 (114)
T ss_pred HHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCC--------C-ccHHHHH-H-----------
Confidence 33468999999999999999976543 2 245555543 3666655543 1 1122222 1
Q ss_pred ecCCCCCchhhhhhccccCCCCCCCccccceeEEEECC-CCcEEEEcCCCCChhhHHHHHHhhh
Q 027311 162 VDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDK-EGNVVERYAPTTSPLSIEVVLECLC 224 (225)
Q Consensus 162 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~-~G~I~~~~~g~~~~~~l~~~l~~ll 224 (225)
.| ++.++|+.+++|+ +|+++.+..|..+++++.+.|++..
T Consensus 71 ----------~~-------------~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 71 ----------SY-------------KVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred ----------Hh-------------CccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHH
Confidence 12 5667899999999 8999999999999999999988764
No 125
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.92 E-value=6.9e-09 Score=72.12 Aligned_cols=89 Identities=15% Similarity=0.140 Sum_probs=64.7
Q ss_pred CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCC
Q 027311 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN 168 (225)
Q Consensus 89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 168 (225)
|+++++.|+++||++|....+.+.++.++++++ +.++.|+.|. ..+.+ +.+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~~-----------~~~~~-~~~---------------- 62 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK-LLFVVVDADD-----------FGRHL-EYF---------------- 62 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchHh-----------hHHHH-HHc----------------
Confidence 789999999999999999999999999999866 8888887652 11222 221
Q ss_pred chhhhhhccccCCCCCCCccc--cceeEEEECCC-CcEEEEcCCCCChhhHHHHHHhhh
Q 027311 169 AAPLYKHLKSSKGGLFGDSIK--WNFSKFLVDKE-GNVVERYAPTTSPLSIEVVLECLC 224 (225)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~v~--~~P~~~lid~~-G~I~~~~~g~~~~~~l~~~l~~ll 224 (225)
++. ++|+.++++.. |.......+..+.+.+.+.|+.++
T Consensus 63 ------------------~i~~~~~P~~~~~~~~~~~k~~~~~~~~~~~~l~~fi~~~~ 103 (103)
T cd02982 63 ------------------GLKEEDLPVIAIINLSDGKKYLMPEEELTAESLEEFVEDFL 103 (103)
T ss_pred ------------------CCChhhCCEEEEEecccccccCCCccccCHHHHHHHHHhhC
Confidence 444 57888888763 544334444457888888887653
No 126
>PTZ00102 disulphide isomerase; Provisional
Probab=98.88 E-value=6.3e-09 Score=91.65 Aligned_cols=89 Identities=13% Similarity=0.197 Sum_probs=67.2
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcC--CeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ--GLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN 165 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~--~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 165 (225)
+++.++|.||++||++|+...|.+.++.+++++. ++.+..|..+. ..++ + ++
T Consensus 48 ~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~--------~~~l---~-~~-------------- 101 (477)
T PTZ00102 48 ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATE--------EMEL---A-QE-------------- 101 (477)
T ss_pred cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCC--------CHHH---H-Hh--------------
Confidence 5789999999999999999999999999888654 36677666542 1111 1 11
Q ss_pred CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311 166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC 224 (225)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll 224 (225)
| ++.++|+.++++..+ .+ .+.|..+.+.+.+.+++++
T Consensus 102 -------~-------------~i~~~Pt~~~~~~g~-~~-~y~g~~~~~~l~~~l~~~~ 138 (477)
T PTZ00102 102 -------F-------------GVRGYPTIKFFNKGN-PV-NYSGGRTADGIVSWIKKLT 138 (477)
T ss_pred -------c-------------CCCcccEEEEEECCc-eE-EecCCCCHHHHHHHHHHhh
Confidence 2 777889999997654 44 7888888889999888765
No 127
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.8e-08 Score=78.99 Aligned_cols=90 Identities=19% Similarity=0.230 Sum_probs=67.8
Q ss_pred CCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeec
Q 027311 84 LSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVD 163 (225)
Q Consensus 84 l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 163 (225)
|+.-.||.++|+|.|+||++|+...|.+.++..+|++ ..++-|.+| +.+.-+ .
T Consensus 16 ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~--aVFlkVdVd-----------~c~~ta-a------------- 68 (288)
T KOG0908|consen 16 LSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG--AVFLKVDVD-----------ECRGTA-A------------- 68 (288)
T ss_pred hhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc--cEEEEEeHH-----------Hhhchh-h-------------
Confidence 4444689999999999999999999999999999954 788888765 222111 0
Q ss_pred CCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhh
Q 027311 164 VNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL 223 (225)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~l 223 (225)
+++|.+.||.++. ++|+-+.+..|. ++.-|++.+++.
T Consensus 69 ---------------------~~gV~amPTFiff-~ng~kid~~qGA-d~~gLe~kv~~~ 105 (288)
T KOG0908|consen 69 ---------------------TNGVNAMPTFIFF-RNGVKIDQIQGA-DASGLEEKVAKY 105 (288)
T ss_pred ---------------------hcCcccCceEEEE-ecCeEeeeecCC-CHHHHHHHHHHH
Confidence 1288889996666 889988888874 344577776654
No 128
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.83 E-value=1.2e-08 Score=80.45 Aligned_cols=100 Identities=21% Similarity=0.188 Sum_probs=73.2
Q ss_pred cCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeee
Q 027311 83 DLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKV 162 (225)
Q Consensus 83 ~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (225)
.+.+..+++-|+.|+.+.|+.|....|.|+.+.++| |+.|+.||+|. ..-..||..
T Consensus 114 ~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG------------------~~~~~fp~~--- 169 (215)
T PF13728_consen 114 ALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY---GFSVIPVSLDG------------------RPIPSFPNP--- 169 (215)
T ss_pred HHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---CCEEEEEecCC------------------CCCcCCCCC---
Confidence 355667889999999999999999999999999998 49999999983 101122222
Q ss_pred cCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCC-cEEEEcCCCCChhhHHHHH
Q 027311 163 DVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEG-NVVERYAPTTSPLSIEVVL 220 (225)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G-~I~~~~~g~~~~~~l~~~l 220 (225)
..+.. ..+.+ ++..+|++|||++++ ++.-...|..+.++|.+.|
T Consensus 170 ~~~~g-~~~~l-------------~v~~~Pal~Lv~~~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 170 RPDPG-QAKRL-------------GVKVTPALFLVNPNTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred CCCHH-HHHHc-------------CCCcCCEEEEEECCCCeEEEEeeecCCHHHHHHhh
Confidence 11111 11112 788899999999988 6656677888888887754
No 129
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.81 E-value=1.8e-08 Score=80.91 Aligned_cols=103 Identities=8% Similarity=0.095 Sum_probs=76.3
Q ss_pred CCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeec
Q 027311 84 LSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVD 163 (225)
Q Consensus 84 l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 163 (225)
+.++.+++-|++|+.+.|+.|....|.++.+.++|+ +.++.||+|. .....||.. .
T Consensus 145 i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~yg---i~v~~VS~DG------------------~~~p~fp~~---~ 200 (256)
T TIGR02739 145 IQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG---ISVIPISVDG------------------TLIPGLPNS---R 200 (256)
T ss_pred HHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhC---CeEEEEecCC------------------CCCCCCCCc---c
Confidence 455567899999999999999999999999999985 9999999983 111123332 1
Q ss_pred CCCCCchhhhhhccccCCCCCCCccccceeEEEECCC-CcEEEEcCCCCChhhHHHHHHhhh
Q 027311 164 VNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKE-GNVVERYAPTTSPLSIEVVLECLC 224 (225)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~-G~I~~~~~g~~~~~~l~~~l~~ll 224 (225)
.+.....+ + ++..+|++|||+++ +++.-...|.++.++|.+.|..++
T Consensus 201 ~d~gqa~~-l-------------~v~~~Pal~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 201 SDSGQAQH-L-------------GVKYFPALYLVNPKSQKMSPLAYGFISQDELKERILNVL 248 (256)
T ss_pred CChHHHHh-c-------------CCccCceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHH
Confidence 11111111 1 78889999999999 666566788999999988887654
No 130
>PTZ00062 glutaredoxin; Provisional
Probab=98.81 E-value=3e-08 Score=77.25 Aligned_cols=76 Identities=7% Similarity=-0.022 Sum_probs=60.5
Q ss_pred CEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCCc
Q 027311 90 KLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNA 169 (225)
Q Consensus 90 k~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 169 (225)
..+|++||++|||+|+...+.|.++.++|++ +.++.|+.|
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~--~~F~~V~~d-------------------------------------- 57 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPS--LEFYVVNLA-------------------------------------- 57 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCCC--cEEEEEccc--------------------------------------
Confidence 4678999999999999999999999999964 777777411
Q ss_pred hhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhh
Q 027311 170 APLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL 223 (225)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~l 223 (225)
| +|.++|+.+++ ++|+++.+..|.. +.++...+++.
T Consensus 58 ---~-------------~V~~vPtfv~~-~~g~~i~r~~G~~-~~~~~~~~~~~ 93 (204)
T PTZ00062 58 ---D-------------ANNEYGVFEFY-QNSQLINSLEGCN-TSTLVSFIRGW 93 (204)
T ss_pred ---c-------------CcccceEEEEE-ECCEEEeeeeCCC-HHHHHHHHHHH
Confidence 2 78889998888 7999999988754 55666666543
No 131
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.80 E-value=3.2e-08 Score=78.24 Aligned_cols=91 Identities=14% Similarity=0.261 Sum_probs=63.8
Q ss_pred cCCCEEEEEEcc---cCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeec
Q 027311 87 YKGKLLLIVNVA---SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVD 163 (225)
Q Consensus 87 ~~gk~vlv~F~~---twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 163 (225)
.++...++.|.+ +||++|+...|.+.++.+++.+ +++..+.+|. +...++ + +
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~--~~i~~v~vd~------~~~~~l---~-~------------- 71 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK--LKLEIYDFDT------PEDKEE---A-E------------- 71 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC--ceEEEEecCC------cccHHH---H-H-------------
Confidence 344455656777 9999999999999999999853 5555565552 011111 1 1
Q ss_pred CCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEE-EEcCCCCChhhHHHHHHhhh
Q 027311 164 VNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVV-ERYAPTTSPLSIEVVLECLC 224 (225)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~-~~~~g~~~~~~l~~~l~~ll 224 (225)
.| +|.++|+.++++ +|+.+ .++.|..+.+++.+.|+.++
T Consensus 72 --------~~-------------~V~~~Pt~~~f~-~g~~~~~~~~G~~~~~~l~~~i~~~~ 111 (215)
T TIGR02187 72 --------KY-------------GVERVPTTIILE-EGKDGGIRYTGIPAGYEFAALIEDIV 111 (215)
T ss_pred --------Hc-------------CCCccCEEEEEe-CCeeeEEEEeecCCHHHHHHHHHHHH
Confidence 12 788899988885 57776 48889888888888888775
No 132
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.76 E-value=3.2e-08 Score=79.11 Aligned_cols=103 Identities=12% Similarity=0.099 Sum_probs=76.2
Q ss_pred CCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeec
Q 027311 84 LSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVD 163 (225)
Q Consensus 84 l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 163 (225)
+.++.+++-|++|+.+.||.|....|.++.+.++|+ +.|+.||+|. .....||.. .
T Consensus 138 i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg---~~v~~VS~DG------------------~~~p~fp~~---~ 193 (248)
T PRK13703 138 IAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG---LSVIPVSVDG------------------VINPLLPDS---R 193 (248)
T ss_pred HHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhC---CeEEEEecCC------------------CCCCCCCCC---c
Confidence 455567899999999999999999999999999985 8999999983 111123322 1
Q ss_pred CCCCCchhhhhhccccCCCCCCCccccceeEEEECCCC-cEEEEcCCCCChhhHHHHHHhhh
Q 027311 164 VNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEG-NVVERYAPTTSPLSIEVVLECLC 224 (225)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G-~I~~~~~g~~~~~~l~~~l~~ll 224 (225)
.+.....+ + ++..+|++|||+++. ++.-...|..+.++|.+.|..+.
T Consensus 194 ~d~gqa~~-l-------------~v~~~PAl~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~ 241 (248)
T PRK13703 194 TDQGQAQR-L-------------GVKYFPALMLVDPKSGSVRPLSYGFITQDDLAKRFLNVS 241 (248)
T ss_pred cChhHHHh-c-------------CCcccceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHH
Confidence 11111111 1 788899999999996 66667888999999988887653
No 133
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.66 E-value=1.3e-07 Score=82.73 Aligned_cols=88 Identities=15% Similarity=0.176 Sum_probs=67.9
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhc-C-CeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN-Q-GLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN 165 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~-~-~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 165 (225)
.++.++|.||++||++|+...|.++++.+++++ . ++.++.|+.+. + . .
T Consensus 363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~-------n----------~------~------- 412 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATA-------N----------D------V------- 412 (462)
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCC-------C----------c------c-------
Confidence 478999999999999999999999999999987 2 58888887652 0 0 0
Q ss_pred CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcE-EEEcCCCCChhhHHHHHHhh
Q 027311 166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNV-VERYAPTTSPLSIEVVLECL 223 (225)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I-~~~~~g~~~~~~l~~~l~~l 223 (225)
.. + ++.++|+.++.++.++. ...+.|..+.+.+.+.|++.
T Consensus 413 ----~~-~-------------~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~ 453 (462)
T TIGR01130 413 ----PP-F-------------EVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKH 453 (462)
T ss_pred ----CC-C-------------CccccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhc
Confidence 00 1 67778999999766652 35677777888888888764
No 134
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.64 E-value=1.9e-07 Score=67.39 Aligned_cols=77 Identities=9% Similarity=0.144 Sum_probs=49.5
Q ss_pred cCCCEEEEEEcccCCCCChHhHHHHH---HHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeec
Q 027311 87 YKGKLLLIVNVASQCGLTNSNYTELS---QLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVD 163 (225)
Q Consensus 87 ~~gk~vlv~F~~twC~~C~~~~~~l~---~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 163 (225)
-+||+++|+|++.||++|+..-..+- ++.+...+ ++.+|-+..|. + + .. . .
T Consensus 21 ~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~-~Fv~V~l~~d~-------t-d-------~~--~--------~ 74 (130)
T cd02960 21 KSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE-DFIMLNLVHET-------T-D-------KN--L--------S 74 (130)
T ss_pred HCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh-CeEEEEEEecc-------C-C-------CC--c--------C
Confidence 36999999999999999998776542 34444433 35444444331 0 0 00 0 0
Q ss_pred CCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC
Q 027311 164 VNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT 211 (225)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~ 211 (225)
.. + .++|+++++|++|+++.+..|..
T Consensus 75 ~~---------------------g-~~vPtivFld~~g~vi~~i~Gy~ 100 (130)
T cd02960 75 PD---------------------G-QYVPRIMFVDPSLTVRADITGRY 100 (130)
T ss_pred cc---------------------C-cccCeEEEECCCCCCcccccccc
Confidence 00 2 24799999999999998877754
No 135
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.64 E-value=2.4e-07 Score=73.25 Aligned_cols=83 Identities=7% Similarity=0.016 Sum_probs=56.2
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (225)
++.++|+.||++||++|....+.++++..++. .+.+.-|..|. ..+ +. ++
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~~~-------~~~-~~----~~---------------- 181 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALAND--KILGEMIEANE-------NPD-LA----EK---------------- 181 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeCCC-------CHH-HH----HH----------------
Confidence 44456666999999999988888888887743 37776666552 111 11 11
Q ss_pred CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHh
Q 027311 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLEC 222 (225)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ 222 (225)
| ++.++|++++ +++|+. +.|..+.+++.+.|.+
T Consensus 182 -----~-------------~V~~vPtl~i-~~~~~~---~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 182 -----Y-------------GVMSVPKIVI-NKGVEE---FVGAYPEEQFLEYILS 214 (215)
T ss_pred -----h-------------CCccCCEEEE-ecCCEE---EECCCCHHHHHHHHHh
Confidence 2 7788899665 466763 6677777788877764
No 136
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.56 E-value=6.2e-07 Score=60.74 Aligned_cols=45 Identities=11% Similarity=0.028 Sum_probs=37.1
Q ss_pred CccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311 85 SIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 85 ~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d 131 (225)
.++++.+-+..|+++||++|....+.++++.+++. ++.+..+..|
T Consensus 8 ~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~ 52 (89)
T cd03026 8 RRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGA 52 (89)
T ss_pred HhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhH
Confidence 45677788888999999999999999999998775 3777777655
No 137
>PHA02125 thioredoxin-like protein
Probab=98.55 E-value=4.9e-07 Score=59.22 Aligned_cols=22 Identities=14% Similarity=0.104 Sum_probs=19.2
Q ss_pred EEEEcccCCCCChHhHHHHHHH
Q 027311 93 LIVNVASQCGLTNSNYTELSQL 114 (225)
Q Consensus 93 lv~F~~twC~~C~~~~~~l~~l 114 (225)
++.|+++||++|+...|.|+++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~ 23 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV 23 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH
Confidence 6889999999999988888654
No 138
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.50 E-value=1.1e-06 Score=56.00 Aligned_cols=38 Identities=8% Similarity=0.063 Sum_probs=30.9
Q ss_pred EEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311 92 LLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 92 vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d 131 (225)
-+..|+++|||+|....+.++++.+++. ++.+..+++|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~--~i~~~~id~~ 39 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP--NISAEMIDAA 39 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC--ceEEEEEEcc
Confidence 3667999999999999999999977643 4888888766
No 139
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=98.49 E-value=1.1e-05 Score=59.55 Aligned_cols=143 Identities=18% Similarity=0.226 Sum_probs=88.7
Q ss_pred CCCceecCeEEeCC-----CCC-----eecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHH-HhcCCeEEEEE-ecC
Q 027311 64 QSKTSVHDFSVKDA-----KGQ-----DVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDK-YKNQGLEILAF-PCN 131 (225)
Q Consensus 64 ~~g~~~p~f~l~~~-----~G~-----~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~-~~~~~~~iv~I-s~d 131 (225)
..|+++|...+.|- +|. .++.+.+.||+.+|...|-.-..--...|-+..+.+. ++....+..+| ++|
T Consensus 2 ~~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~d 81 (160)
T PF09695_consen 2 TLGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLD 81 (160)
T ss_pred cCCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEEecc
Confidence 46778888777663 444 4455667899999988876544444455666666665 66555766664 565
Q ss_pred CCCCCCCCCHHHHHHHHHhhcCCCcceeee-ecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC
Q 027311 132 QFGAQEPGDNEQIQEFACTRFKAEFPIFDK-VDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT 210 (225)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~ 210 (225)
+. -..+.-=++..+ ++..-.||+-.. .|.+|. .+..|+.-.. .-.++++|++|+|++...|.
T Consensus 82 DA---i~gt~~fVrss~-e~~kk~~p~s~~vlD~~G~-~~~aW~L~~~------------~SaiiVlDK~G~V~F~k~G~ 144 (160)
T PF09695_consen 82 DA---IWGTGGFVRSSA-EDSKKEFPWSQFVLDSNGV-VRKAWQLQEE------------SSAIIVLDKQGKVQFVKEGA 144 (160)
T ss_pred cc---cccchHHHHHHH-HHhhhhCCCcEEEEcCCCc-eeccccCCCC------------CceEEEEcCCccEEEEECCC
Confidence 31 111344444444 333444554322 566664 3434422111 12568999999999999999
Q ss_pred CChhhHHHHHHhh
Q 027311 211 TSPLSIEVVLECL 223 (225)
Q Consensus 211 ~~~~~l~~~l~~l 223 (225)
.+++++.+.|.-+
T Consensus 145 Ls~~Ev~qVi~Ll 157 (160)
T PF09695_consen 145 LSPAEVQQVIALL 157 (160)
T ss_pred CCHHHHHHHHHHH
Confidence 9999998887643
No 140
>smart00594 UAS UAS domain.
Probab=98.48 E-value=1.6e-06 Score=62.38 Aligned_cols=89 Identities=12% Similarity=0.106 Sum_probs=61.6
Q ss_pred cCCCEEEEEEcccCCCCChHhHHHH---HHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeec
Q 027311 87 YKGKLLLIVNVASQCGLTNSNYTEL---SQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVD 163 (225)
Q Consensus 87 ~~gk~vlv~F~~twC~~C~~~~~~l---~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 163 (225)
-+||.++|+|++.||+.|....... .++.+.+.+ ++.++.+.++. .+. .+.+ +
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~~--------~eg-~~l~-~------------- 80 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVDT--------SEG-QRVS-Q------------- 80 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCCC--------hhH-HHHH-H-------------
Confidence 3689999999999999999766542 234444443 46666665542 121 2222 1
Q ss_pred CCCCCchhhhhhccccCCCCCCCccccceeEEEECCCC-----cEEEEcCCCCChhhHHHHH
Q 027311 164 VNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEG-----NVVERYAPTTSPLSIEVVL 220 (225)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G-----~I~~~~~g~~~~~~l~~~l 220 (225)
.| ++.+.|+.+++|++| .++.+..|..+++++...|
T Consensus 81 --------~~-------------~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 81 --------FY-------------KLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred --------hc-------------CcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 12 667789999999998 5778888999988887765
No 141
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=2.4e-06 Score=62.08 Aligned_cols=132 Identities=20% Similarity=0.238 Sum_probs=88.3
Q ss_pred cCCCceecCeEEeCCCC-------CeecCCc-cCCCEEEE-EEcccCCCCChH-hHHHHHHHHHHHhcCCe-EEEEEecC
Q 027311 63 SQSKTSVHDFSVKDAKG-------QDVDLSI-YKGKLLLI-VNVASQCGLTNS-NYTELSQLYDKYKNQGL-EILAFPCN 131 (225)
Q Consensus 63 ~~~g~~~p~f~l~~~~G-------~~~~l~~-~~gk~vlv-~F~~twC~~C~~-~~~~l~~l~~~~~~~~~-~iv~Is~d 131 (225)
..+|+++|..++++.-+ ..++..+ ++||.|+| ...+...|.|.. .+|...+++++++.+|+ .|+.||++
T Consensus 3 ~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN 82 (165)
T COG0678 3 IMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN 82 (165)
T ss_pred cccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC
Confidence 47899999988877633 2344445 57886555 466889999997 99999999999999997 57888887
Q ss_pred CCCCCCCCCHHHHHHHHHhhcCCC--cceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCC
Q 027311 132 QFGAQEPGDNEQIQEFACTRFKAE--FPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAP 209 (225)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g 209 (225)
+.-.+.+|. +..+.. ..++ .|.+++..+. .+.+-.. ...|.++++.-...|| +||.|...+..
T Consensus 83 --------D~FVm~AWa-k~~g~~~~I~fi--~Dg~geFTk~-~Gm~~d~--~~~g~G~RS~RYsmvV-~nGvV~~~~iE 147 (165)
T COG0678 83 --------DAFVMNAWA-KSQGGEGNIKFI--PDGNGEFTKA-MGMLVDK--SDLGFGVRSWRYSMVV-ENGVVEKLFIE 147 (165)
T ss_pred --------cHHHHHHHH-HhcCCCccEEEe--cCCCchhhhh-cCceeec--ccCCcceeeeeEEEEE-eCCeEEEEEec
Confidence 678888888 444444 3333 4544443332 2221111 1222367777777788 88999877654
No 142
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.43 E-value=1.5e-07 Score=68.29 Aligned_cols=81 Identities=16% Similarity=0.256 Sum_probs=47.5
Q ss_pred CccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecC
Q 027311 85 SIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDV 164 (225)
Q Consensus 85 ~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 164 (225)
+....+..++.|..+|||-|...+|.|.++.+..++ +.+=-|+.| +-.+.. ++
T Consensus 37 ~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~--i~~~~i~rd-----------~~~el~-~~------------- 89 (129)
T PF14595_consen 37 KSIQKPYNILVITETWCGDCARNVPVLAKIAEANPN--IEVRIILRD-----------ENKELM-DQ------------- 89 (129)
T ss_dssp HT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT--EEEEEE-HH-----------HHHHHT-TT-------------
T ss_pred HhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCC--CeEEEEEec-----------CChhHH-HH-------------
Confidence 344566888889999999999999999999998753 444444433 222221 11
Q ss_pred CCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC
Q 027311 165 NGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT 210 (225)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~ 210 (225)
|.. .+..++|+++++|.+|+.+.++.++
T Consensus 90 --------~lt----------~g~~~IP~~I~~d~~~~~lg~wger 117 (129)
T PF14595_consen 90 --------YLT----------NGGRSIPTFIFLDKDGKELGRWGER 117 (129)
T ss_dssp --------TTT-----------SS--SSEEEEE-TT--EEEEEESS
T ss_pred --------HHh----------CCCeecCEEEEEcCCCCEeEEEcCC
Confidence 000 0677799999999999999998775
No 143
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.2e-06 Score=76.12 Aligned_cols=88 Identities=15% Similarity=0.238 Sum_probs=65.6
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcC--CeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ--GLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN 165 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~--~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 165 (225)
....++|.|||+||.+|++..|++.+....++.. .+.+.-|... ++ ...+ .+
T Consensus 41 ~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat----------~~-~~~~-~~-------------- 94 (493)
T KOG0190|consen 41 GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDAT----------EE-SDLA-SK-------------- 94 (493)
T ss_pred cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecc----------hh-hhhH-hh--------------
Confidence 4568999999999999999999999999999887 3555555322 11 2222 22
Q ss_pred CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHh
Q 027311 166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLEC 222 (225)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ 222 (225)
| +|+++||+-|. ++|+....|.|.-..+.+..++++
T Consensus 95 -------y-------------~v~gyPTlkiF-rnG~~~~~Y~G~r~adgIv~wl~k 130 (493)
T KOG0190|consen 95 -------Y-------------EVRGYPTLKIF-RNGRSAQDYNGPREADGIVKWLKK 130 (493)
T ss_pred -------h-------------cCCCCCeEEEE-ecCCcceeccCcccHHHHHHHHHh
Confidence 2 78888986666 899986778887778888887765
No 144
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.35 E-value=1.5e-06 Score=57.83 Aligned_cols=43 Identities=14% Similarity=0.222 Sum_probs=33.6
Q ss_pred CCCEEEEEEcccCCCCChHhHHHH---HHHHHHHhcCCeEEEEEecC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTEL---SQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l---~~l~~~~~~~~~~iv~Is~d 131 (225)
+||+++|+|+++||+.|+..-..+ .++.+.+.+ ++..+.|..+
T Consensus 16 ~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~-~fv~v~vd~~ 61 (82)
T PF13899_consen 16 EGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK-NFVLVKVDVD 61 (82)
T ss_dssp HTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH-CSEEEEEETT
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC-CEEEEEEEcC
Confidence 689999999999999999877766 345554553 4888888765
No 145
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.30 E-value=1.6e-06 Score=76.20 Aligned_cols=95 Identities=15% Similarity=0.059 Sum_probs=71.0
Q ss_pred cCCCEEEEEEcccCCCCChHhHHH-HHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCC
Q 027311 87 YKGKLLLIVNVASQCGLTNSNYTE-LSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN 165 (225)
Q Consensus 87 ~~gk~vlv~F~~twC~~C~~~~~~-l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 165 (225)
-++|+|+|+|+|.||-.|+..-+. +.+-+...+-.+++.+-+.+.. ++.+..+.+ ++
T Consensus 472 ~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~-------~~p~~~~lL-k~-------------- 529 (569)
T COG4232 472 AKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTA-------NDPAITALL-KR-------------- 529 (569)
T ss_pred CCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecC-------CCHHHHHHH-HH--------------
Confidence 356799999999999999965543 3456666665668888777653 445555555 32
Q ss_pred CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhh
Q 027311 166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL 223 (225)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~l 223 (225)
| ++-+.|++++++++|.-.-...|..+.+.+++.|++.
T Consensus 530 -------~-------------~~~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 530 -------L-------------GVFGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred -------c-------------CCCCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 1 6667899999999998877788888999999998764
No 146
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.30 E-value=1.2e-06 Score=61.02 Aligned_cols=49 Identities=27% Similarity=0.371 Sum_probs=41.5
Q ss_pred ecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311 82 VDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 82 ~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d 131 (225)
...+..+++++++.||++||++|+..+|.+.++.+++.. .+.++.++..
T Consensus 25 ~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~ 73 (127)
T COG0526 25 LSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD 73 (127)
T ss_pred eehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence 344444589999999999999999999999999999986 4888888864
No 147
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.17 E-value=8.9e-06 Score=50.03 Aligned_cols=38 Identities=21% Similarity=0.339 Sum_probs=32.5
Q ss_pred EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCC
Q 027311 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 132 (225)
Q Consensus 93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~ 132 (225)
++.||++||+.|....+.++++ ++...++.++.++.+.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~ 38 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDE 38 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCC
Confidence 4779999999999999999998 4555679999999874
No 148
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=98.17 E-value=2.9e-05 Score=60.87 Aligned_cols=117 Identities=14% Similarity=0.272 Sum_probs=77.1
Q ss_pred ceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCC---eEEEEEecCCCCCCCCCCHHH
Q 027311 67 TSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQG---LEILAFPCNQFGAQEPGDNEQ 143 (225)
Q Consensus 67 ~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~---~~iv~Is~d~~~~~~~~~~~~ 143 (225)
+..|.|++-+ .....+.+|+++||.+-..+|..|...+..|..|..++.+.| +.++.|+--. ...+
T Consensus 8 ~~~p~W~i~~----~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~-------~~s~ 76 (238)
T PF04592_consen 8 KPPPPWKIGG----QDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQG-------EHSR 76 (238)
T ss_pred CCCCCceECC----chHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCC-------cchh
Confidence 4567777644 345677789999999998899999999999999999998776 6677776321 2223
Q ss_pred HH-HHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCC
Q 027311 144 IQ-EFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAP 209 (225)
Q Consensus 144 ~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g 209 (225)
.. ..++.+....+|++.. +.. ...+|..+...+. -++|+|+-|++.+...-
T Consensus 77 ~~~~~l~~r~~~~ipVyqq-~~~---q~dvW~~L~G~kd-----------D~~iyDRCGrL~~~i~~ 128 (238)
T PF04592_consen 77 LKYWELKRRVSEHIPVYQQ-DEN---QPDVWELLNGSKD-----------DFLIYDRCGRLTYHIPL 128 (238)
T ss_pred HHHHHHHHhCCCCCceecC-Ccc---ccCHHHHhCCCcC-----------cEEEEeccCcEEEEecC
Confidence 32 2333444556888631 111 2234544433221 33899999999877543
No 149
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=98.08 E-value=4.9e-05 Score=61.30 Aligned_cols=133 Identities=15% Similarity=0.205 Sum_probs=77.8
Q ss_pred CCCceecCeEEeCCCCCeecCCc-cCCCEEEEEEccc-CCCCChHhHHHHHHHHHHHh-cC--CeEEEEEecCCCCCCCC
Q 027311 64 QSKTSVHDFSVKDAKGQDVDLSI-YKGKLLLIVNVAS-QCGLTNSNYTELSQLYDKYK-NQ--GLEILAFPCNQFGAQEP 138 (225)
Q Consensus 64 ~~g~~~p~f~l~~~~G~~~~l~~-~~gk~vlv~F~~t-wC~~C~~~~~~l~~l~~~~~-~~--~~~iv~Is~d~~~~~~~ 138 (225)
....-.|+|..++++|+.+++.+ ++||+.||..+.+ |-..|....-. ...++|. .. .++++-|++-+
T Consensus 96 ~kAlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~--p~~~~~~~~~~~~~q~v~In~~e------ 167 (252)
T PF05176_consen 96 DKALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTS--PFLEDFLQEPYGRVQIVEINLIE------ 167 (252)
T ss_pred HhCCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHhh--HHHHHHhhCCCCceEEEEEecch------
Confidence 34567899999999999999888 6999888766544 53344433322 2333332 22 59999999742
Q ss_pred CCHHHHHHHHHhhc------------CCCcceeeeecCC--CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEE
Q 027311 139 GDNEQIQEFACTRF------------KAEFPIFDKVDVN--GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVV 204 (225)
Q Consensus 139 ~~~~~~~~~~~~~~------------~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~ 204 (225)
.-++.++..-. ...|-+ .+.. ....++..+. .-.-+..+||||++|+|+
T Consensus 168 ---~~~k~~l~~~~~~~lrk~ip~~~h~~Yf~---~~~~~~~~~iRe~Lgi-----------~N~~~GYvyLVD~~grIR 230 (252)
T PF05176_consen 168 ---NWLKSWLVKLFMGSLRKSIPEERHDRYFI---VYRGQLSDDIREALGI-----------NNSYVGYVYLVDPNGRIR 230 (252)
T ss_pred ---HHHHHHHHHHHhhhhhccCCHHHCceEEE---EeCCcccHHHHHHhCC-----------CCCCcCeEEEECCCCeEE
Confidence 23333331110 111111 1111 1111211111 111235789999999999
Q ss_pred EEcCCCCChhhHHHHHH
Q 027311 205 ERYAPTTSPLSIEVVLE 221 (225)
Q Consensus 205 ~~~~g~~~~~~l~~~l~ 221 (225)
+...|..++++++...+
T Consensus 231 WagsG~At~~E~~~L~k 247 (252)
T PF05176_consen 231 WAGSGPATPEELESLWK 247 (252)
T ss_pred eCccCCCCHHHHHHHHH
Confidence 99999999988776554
No 150
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.08 E-value=4.2e-05 Score=54.20 Aligned_cols=43 Identities=12% Similarity=0.040 Sum_probs=31.2
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcC--CeEEEEEecCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ--GLEILAFPCNQ 132 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~--~~~iv~Is~d~ 132 (225)
+.+.+||.|+|+| |.|.. .|+.+++..++... .+.+.-|..|+
T Consensus 17 ~~~~vlV~F~A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d 61 (116)
T cd03007 17 KFKYSLVKFDTAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIKD 61 (116)
T ss_pred cCCcEEEEEeCCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEeccc
Confidence 5678999999966 66665 58888888888543 36666676653
No 151
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.02 E-value=5.7e-05 Score=48.45 Aligned_cols=33 Identities=12% Similarity=0.207 Sum_probs=24.9
Q ss_pred EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCC
Q 027311 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 132 (225)
Q Consensus 93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~ 132 (225)
+..|+++||++|+...+.|++ .++.+..++++.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~ 34 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------KGIAFEEIDVEK 34 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CCCeEEEEeccC
Confidence 456889999999987766654 357787787763
No 152
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=4.1e-05 Score=65.83 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=36.0
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d 131 (225)
.+++.+|.||++||++|.+..|.+.++...+++. +.+..|..+
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~-~~~~~vd~~ 88 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK-VKIGAVDCD 88 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc-eEEEEeCch
Confidence 3679999999999999999999999999999873 666666543
No 153
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=0.00014 Score=53.28 Aligned_cols=136 Identities=17% Similarity=0.186 Sum_probs=84.7
Q ss_pred ccCCCceecC--eE-EeCC----CCCeecCCcc-CCCEEEEE-EcccCCCC-ChHhHHHHHHHHHHHhcCCe-EEEEEec
Q 027311 62 ASQSKTSVHD--FS-VKDA----KGQDVDLSIY-KGKLLLIV-NVASQCGL-TNSNYTELSQLYDKYKNQGL-EILAFPC 130 (225)
Q Consensus 62 ~~~~g~~~p~--f~-l~~~----~G~~~~l~~~-~gk~vlv~-F~~twC~~-C~~~~~~l~~l~~~~~~~~~-~iv~Is~ 130 (225)
...+|+.+|+ .+ +.+. .|.+++++++ +||.++|+ ..+...|. |...+|.+.+-.++++.+|+ +|+.||+
T Consensus 8 ~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvSV 87 (171)
T KOG0541|consen 8 PIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVSV 87 (171)
T ss_pred cccccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEec
Confidence 3478999998 33 2221 2337888884 89766663 55778887 67899999999999999997 5788888
Q ss_pred CCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC
Q 027311 131 NQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT 210 (225)
Q Consensus 131 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~ 210 (225)
| ++-.++.|. +.++.+-.+-...|..+...+ .++...... +..+ ++++--...++ .||++.+.....
T Consensus 88 n--------DpFv~~aW~-k~~g~~~~V~f~aD~~g~ftk-~lgleld~~-d~~~-g~RS~R~a~vv-engkV~~~nvE~ 154 (171)
T KOG0541|consen 88 N--------DPFVMKAWA-KSLGANDHVKFVADPAGEFTK-SLGLELDLS-DKLL-GVRSRRYALVV-ENGKVTVVNVEE 154 (171)
T ss_pred C--------cHHHHHHHH-hhcCccceEEEEecCCCceee-eccceeeec-cccC-ccccccEEEEE-eCCeEEEEEecc
Confidence 8 778888887 666664333222455554332 222211111 1111 33333344455 789988876543
No 154
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.95 E-value=9.6e-05 Score=52.56 Aligned_cols=92 Identities=11% Similarity=0.058 Sum_probs=64.4
Q ss_pred ccCCCEEEEEEccc----CCCCChHhH--HHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCccee
Q 027311 86 IYKGKLLLIVNVAS----QCGLTNSNY--TELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIF 159 (225)
Q Consensus 86 ~~~gk~vlv~F~~t----wC~~C~~~~--~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (225)
.-++|.++|+++++ ||..|+..+ +.+.++.+ .++.+++.++.. .+. .+.+ .
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln----~~fv~w~~dv~~--------~eg-~~la-~--------- 70 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN----TRMLFWACSVAK--------PEG-YRVS-Q--------- 70 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH----cCEEEEEEecCC--------hHH-HHHH-H---------
Confidence 34689999999988 777887555 34444443 347777776652 221 1111 1
Q ss_pred eeecCCCCCchhhhhhccccCCCCCCCccccceeEEEE---CCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311 160 DKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLV---DKEGNVVERYAPTTSPLSIEVVLECLCC 225 (225)
Q Consensus 160 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~li---d~~G~I~~~~~g~~~~~~l~~~l~~ll~ 225 (225)
.+ ++.++|+..++ +.+++++.+..|..+++++...|+.+.+
T Consensus 71 ------------~l-------------~~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 71 ------------AL-------------RERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred ------------Hh-------------CCCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 11 66778999999 7778889999999999999999988753
No 155
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=4.8e-05 Score=66.33 Aligned_cols=43 Identities=26% Similarity=0.370 Sum_probs=37.6
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcC-CeEEEEEec
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ-GLEILAFPC 130 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~-~~~iv~Is~ 130 (225)
.+|-|||.|+|+||++|++..|.+++|.+.|++. ++.|.-+..
T Consensus 383 e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDa 426 (493)
T KOG0190|consen 383 EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDA 426 (493)
T ss_pred cccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecc
Confidence 5889999999999999999999999999999976 566666643
No 156
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.87 E-value=0.0002 Score=51.88 Aligned_cols=87 Identities=10% Similarity=0.084 Sum_probs=64.9
Q ss_pred EEEEEEcc--cCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCC
Q 027311 91 LLLIVNVA--SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN 168 (225)
Q Consensus 91 ~vlv~F~~--twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 168 (225)
..+|.|-+ .-+|-+....--|.++.++|.+..+.+..|++|. ..++. .+
T Consensus 36 ~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~--------~~~LA----~~----------------- 86 (132)
T PRK11509 36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ--------SEAIG----DR----------------- 86 (132)
T ss_pred cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCC--------CHHHH----HH-----------------
Confidence 45554542 2455666677788899999974448899898873 22222 11
Q ss_pred chhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311 169 AAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC 224 (225)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll 224 (225)
| +|.++|+.+++ ++|+++.+..|..+.+++.+.|++++
T Consensus 87 ----f-------------gV~siPTLl~F-kdGk~v~~i~G~~~k~~l~~~I~~~L 124 (132)
T PRK11509 87 ----F-------------GVFRFPATLVF-TGGNYRGVLNGIHPWAELINLMRGLV 124 (132)
T ss_pred ----c-------------CCccCCEEEEE-ECCEEEEEEeCcCCHHHHHHHHHHHh
Confidence 2 88889998888 99999999999999999999999886
No 157
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.00041 Score=51.02 Aligned_cols=103 Identities=16% Similarity=0.235 Sum_probs=67.3
Q ss_pred cCCCEEEEEEcccCCCCChHhHHHH---HHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeec
Q 027311 87 YKGKLLLIVNVASQCGLTNSNYTEL---SQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVD 163 (225)
Q Consensus 87 ~~gk~vlv~F~~twC~~C~~~~~~l---~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 163 (225)
-.||+.++-|-...|+.|-..-..+ .++++-+... +.++.+.... + +.+. |.. .+
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h-f~~~~l~i~~-------s-kpv~----------f~~---g~ 97 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH-FSAYYLNISY-------S-KPVL----------FKV---GD 97 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC-eEEEEEEecc-------C-cceE----------eec---Cc
Confidence 4689999999999999998655544 3566666543 7777776532 0 0000 000 00
Q ss_pred C-CCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHH
Q 027311 164 V-NGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLE 221 (225)
Q Consensus 164 ~-~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~ 221 (225)
. ..-...++++.+ +++++|+.++.|++|+-+....|.++++++...++
T Consensus 98 kee~~s~~ELa~kf----------~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 98 KEEKMSTEELAQKF----------AVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLK 146 (182)
T ss_pred eeeeecHHHHHHHh----------ccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence 0 001111222222 89999999999999999999999999998766554
No 158
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.73 E-value=0.00012 Score=59.56 Aligned_cols=91 Identities=12% Similarity=0.135 Sum_probs=60.1
Q ss_pred CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCC--eEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCC
Q 027311 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQG--LEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNG 166 (225)
Q Consensus 89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~--~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 166 (225)
...|+|+|+|+||+.++...|.+.+..+.++++. -++|--.+|- +. ...++.+
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDc------d~----e~~ia~k--------------- 67 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDC------DK----EDDIADK--------------- 67 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEccc------ch----hhHHhhh---------------
Confidence 5689999999999999999999998777665441 2233333331 01 1112122
Q ss_pred CCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEE-EcCCCCChhhHHHHHHhhh
Q 027311 167 DNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVE-RYAPTTSPLSIEVVLECLC 224 (225)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~-~~~g~~~~~~l~~~l~~ll 224 (225)
| .|.-+||.=|+ .+|.+.. .|.|.-+.+.+.+.|++.+
T Consensus 68 ------y-------------~I~KyPTlKvf-rnG~~~~rEYRg~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 68 ------Y-------------HINKYPTLKVF-RNGEMMKREYRGQRSVEALIEFIEKQL 106 (375)
T ss_pred ------h-------------ccccCceeeee-eccchhhhhhccchhHHHHHHHHHHHh
Confidence 2 55556776666 7888877 4778777788888887755
No 159
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=97.58 E-value=0.0018 Score=50.29 Aligned_cols=87 Identities=15% Similarity=0.253 Sum_probs=67.4
Q ss_pred CceecCeEEeCCCCCeecCCc-cCCC--EEEEEEc-----ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCC
Q 027311 66 KTSVHDFSVKDAKGQDVDLSI-YKGK--LLLIVNV-----ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQE 137 (225)
Q Consensus 66 g~~~p~f~l~~~~G~~~~l~~-~~gk--~vlv~F~-----~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~ 137 (225)
+..-.+..+...+|+ ++|.| |.|+ -+|..|. ...|+.|...+-.+.....-+..+++.++.||-.
T Consensus 43 v~v~~~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSra------ 115 (211)
T PF05988_consen 43 VEVDKDYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRA------ 115 (211)
T ss_pred ccCCCCeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCC------
Confidence 334445777777887 99999 5776 3444454 4589999999999987777888888999999965
Q ss_pred CCCHHHHHHHHHhhcCCCcceeeee
Q 027311 138 PGDNEQIQEFACTRFKAEFPIFDKV 162 (225)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (225)
..+++..|. ++.|-.+|+++..
T Consensus 116 --P~~~i~afk-~rmGW~~pw~Ss~ 137 (211)
T PF05988_consen 116 --PLEKIEAFK-RRMGWTFPWYSSY 137 (211)
T ss_pred --CHHHHHHHH-HhcCCCceEEEcC
Confidence 789999998 7778889998643
No 160
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.52 E-value=0.00042 Score=45.29 Aligned_cols=30 Identities=13% Similarity=0.189 Sum_probs=22.6
Q ss_pred cccCCCCChHhHHHHHHHHHHHhcCCeEEEE
Q 027311 97 VASQCGLTNSNYTELSQLYDKYKNQGLEILA 127 (225)
Q Consensus 97 ~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~ 127 (225)
++++|+.|......++++..+++ ..++++-
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~ 35 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEELG-IEVEIID 35 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred eCCCCCCcHHHHHHHHHHHHhcC-CeEEEEE
Confidence 57789999988889988888874 2244443
No 161
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.42 E-value=0.00053 Score=55.49 Aligned_cols=126 Identities=10% Similarity=0.149 Sum_probs=63.5
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhh--------cCCCccee
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTR--------FKAEFPIF 159 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 159 (225)
.+|.+|+.|.-..||+|++...++.++.+. + ++++.-+.+-- -.+++......-+..+ +...+..-
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g--~V~v~~ip~~~---l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~ 189 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS-G--KVQLRHILVGI---IKPDSPGKAAAILAAKDPAKALQEYEASGGKL 189 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc-C--ceEEEEEeccc---cCcchHHHHHHHHhccCHHHHHHHHHHhhhcc
Confidence 577889999999999999999998887654 2 24444333211 1222333222221111 00111000
Q ss_pred eeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHH
Q 027311 160 DKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLE 221 (225)
Q Consensus 160 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~ 221 (225)
...............+.....-....|++++|++|+.|.+|.+. ...|..++++|++.|.
T Consensus 190 -~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~-~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 190 -GLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQ-QVVGLPDPAQLAEIMG 249 (251)
T ss_pred -CCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEE-EecCCCCHHHHHHHhC
Confidence 00000000000000000000000001899999999999999763 4567777888887764
No 162
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.37 E-value=0.00044 Score=45.71 Aligned_cols=46 Identities=20% Similarity=0.311 Sum_probs=31.8
Q ss_pred EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHH
Q 027311 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFA 148 (225)
Q Consensus 93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~ 148 (225)
|+.|+++|||+|....+.|.++. ... .+.++-|+.+. +.+++.+++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~-~~~~~~v~~~~-------~~~~~~~~l 46 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP-AYEVVELDQLS-------NGSEIQDYL 46 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC-CCEEEEeeCCC-------ChHHHHHHH
Confidence 46688999999999998888876 222 26777776542 445555554
No 163
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.34 E-value=0.0024 Score=47.87 Aligned_cols=87 Identities=7% Similarity=0.010 Sum_probs=43.1
Q ss_pred cCCccCCCEEEEEEcccCCCCChHhHH-HHH--HHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCccee
Q 027311 83 DLSIYKGKLLLIVNVASQCGLTNSNYT-ELS--QLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIF 159 (225)
Q Consensus 83 ~l~~~~gk~vlv~F~~twC~~C~~~~~-~l~--~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (225)
..+.-.+|+++|++.++||..|..+.. .++ ++.+.+.+. +.-|-|..+ ...++......-
T Consensus 31 ~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~-FI~VkvDre--------e~Pdid~~y~~~-------- 93 (163)
T PF03190_consen 31 EKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN-FIPVKVDRE--------ERPDIDKIYMNA-------- 93 (163)
T ss_dssp HHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH--EEEEEETT--------T-HHHHHHHHHH--------
T ss_pred HHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC-EEEEEeccc--------cCccHHHHHHHH--------
Confidence 334446899999999999999996654 222 344444332 444444433 333343332110
Q ss_pred eeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcC
Q 027311 160 DKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYA 208 (225)
Q Consensus 160 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~ 208 (225)
.+.+. +..+.|++++++|+|+..+...
T Consensus 94 ---------~~~~~-------------~~gGwPl~vfltPdg~p~~~~t 120 (163)
T PF03190_consen 94 ---------VQAMS-------------GSGGWPLTVFLTPDGKPFFGGT 120 (163)
T ss_dssp ---------HHHHH-------------S---SSEEEEE-TTS-EEEEES
T ss_pred ---------HHHhc-------------CCCCCCceEEECCCCCeeeeee
Confidence 01111 4456899999999999987633
No 164
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.30 E-value=0.0045 Score=49.52 Aligned_cols=38 Identities=13% Similarity=0.267 Sum_probs=29.6
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEe
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFP 129 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is 129 (225)
.||.+|+.|.-..||+|++..+++.++.+ .+++|..+.
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~~v~v~~~~ 143 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA----LGITVRYLA 143 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc----CCeEEEEEe
Confidence 57899999999999999998888877643 456665543
No 165
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.22 E-value=0.00028 Score=62.01 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=35.1
Q ss_pred CEEEEEEcccCCCCChHhHHHHHHHHHHHhcCC--eEEEEEecC
Q 027311 90 KLLLIVNVASQCGLTNSNYTELSQLYDKYKNQG--LEILAFPCN 131 (225)
Q Consensus 90 k~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~--~~iv~Is~d 131 (225)
|.-+|.|+++||+.|+...|.++++.+...+-. +.|.+|..-
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA 101 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCA 101 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeecc
Confidence 478899999999999999999999999887553 667777654
No 166
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.17 E-value=0.0013 Score=46.85 Aligned_cols=43 Identities=14% Similarity=0.202 Sum_probs=32.1
Q ss_pred CCCEEEEEEccc-------CCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311 88 KGKLLLIVNVAS-------QCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 88 ~gk~vlv~F~~t-------wC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d 131 (225)
.|++++|.|.++ |||.|....|.+++......+ +..+|-+.+-
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~VG 67 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEVG 67 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE--
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence 567888888854 999999999999998888544 5888878764
No 167
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=97.12 E-value=0.0084 Score=42.71 Aligned_cols=107 Identities=15% Similarity=0.250 Sum_probs=63.2
Q ss_pred CCccCCC--EEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeee
Q 027311 84 LSIYKGK--LLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDK 161 (225)
Q Consensus 84 l~~~~gk--~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (225)
|+++++| ++||+-....-+.-...+..|++-...+.++.+.++.|.-+...... .
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~----~------------------- 59 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPG----K------------------- 59 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCcccccc----C-------------------
Confidence 5566655 44442223344456677788888777888888888888533211000 0
Q ss_pred ecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhh
Q 027311 162 VDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL 223 (225)
Q Consensus 162 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~l 223 (225)
.........+...+... ....+.+||++||.+..++....+.+++-..|+++
T Consensus 60 -~~~~~~~~~lr~~l~~~---------~~~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 60 -PLSPEDIQALRKRLRIP---------PGGFTVVLIGKDGGVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred -cCCHHHHHHHHHHhCCC---------CCceEEEEEeCCCcEEEecCCCCCHHHHHHHHhCC
Confidence 00011111222222111 11247799999999999999999999999988864
No 168
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=97.10 E-value=0.0067 Score=42.82 Aligned_cols=84 Identities=23% Similarity=0.300 Sum_probs=56.6
Q ss_pred HHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhcccc-----------
Q 027311 111 LSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSS----------- 179 (225)
Q Consensus 111 l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~----------- 179 (225)
|.+...++.+.|++++.|... +.+.+++|+ +..+.+++++. |++. .+|+.+.-.
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g--------~~~~~~~f~-~~~~~p~~ly~--D~~~----~lY~~lg~~~~~~~~~~~~~ 66 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCG--------SPEGIEKFC-ELTGFPFPLYV--DPER----KLYKALGLKRGLKWSLLPPA 66 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcC--------CHHHHHHHH-hccCCCCcEEE--eCcH----HHHHHhCCccccccCCCchH
Confidence 566778888889999999976 666699998 67788999774 4331 222221111
Q ss_pred -----------------CCCCCCCccccceeEEEECCCCcEEEEcCC
Q 027311 180 -----------------KGGLFGDSIKWNFSKFLVDKEGNVVERYAP 209 (225)
Q Consensus 180 -----------------~~~~~~~~v~~~P~~~lid~~G~I~~~~~g 209 (225)
.++.........+.+||+|++|+|++.+..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr~ 113 (115)
T PF13911_consen 67 LWSGLSNIVQSAKNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHRD 113 (115)
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCCceecCeEEEEcCCCeEEEEEec
Confidence 111202255667899999999999998754
No 169
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0026 Score=54.75 Aligned_cols=42 Identities=19% Similarity=0.183 Sum_probs=35.2
Q ss_pred CCEEEEEEcccCCCCChHhHHHHHHHHHHHhc-CCeEEEEEec
Q 027311 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKN-QGLEILAFPC 130 (225)
Q Consensus 89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~-~~~~iv~Is~ 130 (225)
....+|.|+++||++|+..+|.+.++...++. .++.+..+..
T Consensus 162 ~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~ 204 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDA 204 (383)
T ss_pred CcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeecc
Confidence 35788889999999999999999999999874 5577777754
No 170
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=96.91 E-value=0.0016 Score=53.03 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=29.5
Q ss_pred CEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeE
Q 027311 90 KLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLE 124 (225)
Q Consensus 90 k~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~ 124 (225)
...+|+|+|+||.+|++.-|...+.--++++-|.-
T Consensus 44 diW~VdFYAPWC~HCKkLePiWdeVG~elkdig~P 78 (468)
T KOG4277|consen 44 DIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLP 78 (468)
T ss_pred CeEEEEeechhhhhcccccchhHHhCcchhhcCCc
Confidence 37889999999999999999999888777765543
No 171
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.87 E-value=0.014 Score=45.37 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=23.5
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHH
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQ 113 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~ 113 (225)
.+++.++.|....||+|++..+.+.+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh
Confidence 47899999999999999999988877
No 172
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=96.86 E-value=0.0038 Score=40.34 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=22.7
Q ss_pred EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d 131 (225)
+..||++|||+|+...+.|.++ ++.+-.+++|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-------~~~~~~idi~ 33 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-------GAAYEWVDIE 33 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------CCceEEEeCc
Confidence 5679999999999877776554 3444456665
No 173
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=96.77 E-value=0.0056 Score=46.39 Aligned_cols=42 Identities=17% Similarity=0.145 Sum_probs=35.0
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEec
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC 130 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~ 130 (225)
.+++.|+.|+.-.||+|...-+.+.++.++++++ +.+.-+.+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~-v~~~~~~~ 55 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKD-VKFEKVPV 55 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCC-ceEEEcCC
Confidence 5789999999999999999999999999998543 66655544
No 174
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.23 E-value=0.016 Score=38.49 Aligned_cols=37 Identities=5% Similarity=0.064 Sum_probs=30.1
Q ss_pred EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d 131 (225)
|..|..+|||.|......|+++..++ .++.+.-|+++
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi~ 39 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEER--DDFDYRYVDIH 39 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccc--cCCcEEEEECC
Confidence 55688999999999999999999775 35777777766
No 175
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.01 Score=41.73 Aligned_cols=43 Identities=9% Similarity=0.181 Sum_probs=34.7
Q ss_pred CCCEEEEEEcc--------cCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311 88 KGKLLLIVNVA--------SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 88 ~gk~vlv~F~~--------twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d 131 (225)
+|+-+++.|.+ ||||.|.+..|.+.+..+....+ +.+|-+-+-
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~-~~~v~v~VG 74 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPED-VHFVHVYVG 74 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCc-eEEEEEEec
Confidence 67778888874 59999999999999988866554 888887664
No 176
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=96.06 E-value=0.014 Score=42.84 Aligned_cols=146 Identities=18% Similarity=0.232 Sum_probs=79.1
Q ss_pred cccccCCCceecCeEEeC-----CCCCeec-----CCccCCCEEEEEEcccCCCCChHhHHHHHHHHH-HHhcCCeEEEE
Q 027311 59 HTMASQSKTSVHDFSVKD-----AKGQDVD-----LSIYKGKLLLIVNVASQCGLTNSNYTELSQLYD-KYKNQGLEILA 127 (225)
Q Consensus 59 ~~~~~~~g~~~p~f~l~~-----~~G~~~~-----l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~-~~~~~~~~iv~ 127 (225)
.....+.|+++|...+.+ ++|+.++ .+++-||+-||.-.|.....--...+-++.+.. +|.....+--.
T Consensus 19 ~AHnlq~~q~vp~VgV~~~GEl~l~~~~~~y~~W~SAqL~GKvRV~~hiAGRtsaKE~Na~lieaIk~a~fp~~~YQTTT 98 (184)
T COG3054 19 SAHNLQLGQRVPPVGVADRGELVLDKDQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKFPHDRYQTTT 98 (184)
T ss_pred HHhhcccCCcCCCccccccceEEecCcceeecccchhhccchhhhhhhhhcccchhhhchHHHHHHHhccCChHHceeeE
Confidence 334456778888776654 3555544 455679999998777554433333344443332 22222222222
Q ss_pred -EecCCCCCCCCCCHHHHHHHHHhhcCCCcceeee-ecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEE
Q 027311 128 -FPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDK-VDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVE 205 (225)
Q Consensus 128 -Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~ 205 (225)
|+.|+. -+.+..-++.-+ ++..-.||+-.. .|..| ..+..|+. .+.. -.+++.|++|++.+
T Consensus 99 IiN~DDA---i~GtgmFVkssa-e~~Kke~pwSq~vlD~~g-vak~AWqL-~e~~-----------SaivVlDk~G~Vkf 161 (184)
T COG3054 99 IINTDDA---IPGTGMFVKSSA-ESNKKEYPWSQFVLDSNG-VAKNAWQL-KEES-----------SAVVVLDKDGRVKF 161 (184)
T ss_pred EeccCCc---cccccceeecch-hhccccCCceeeEEccch-hhhhhhcc-cccc-----------ceEEEEcCCCcEEE
Confidence 566641 112333333333 444556675443 34444 33334422 1111 25689999999999
Q ss_pred EcCCCCChhhHHHHHH
Q 027311 206 RYAPTTSPLSIEVVLE 221 (225)
Q Consensus 206 ~~~g~~~~~~l~~~l~ 221 (225)
...|..+..++.+.|.
T Consensus 162 vkeGaLt~aevQ~Vi~ 177 (184)
T COG3054 162 VKEGALTQAEVQQVID 177 (184)
T ss_pred EecCCccHHHHHHHHH
Confidence 9999988877666554
No 177
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=96.02 E-value=0.011 Score=43.35 Aligned_cols=42 Identities=19% Similarity=0.366 Sum_probs=32.7
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEe
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFP 129 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is 129 (225)
.++++|+.|+..+||+|....+.+.++..++++-.+.+..++
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~p 45 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEFP 45 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeCC
Confidence 378999999999999999999999998888764234444343
No 178
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.81 E-value=0.055 Score=42.26 Aligned_cols=83 Identities=14% Similarity=0.260 Sum_probs=60.4
Q ss_pred CeEEeCCCCCeecCCcc-CCC--EEEEEEc-c----cCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHH
Q 027311 71 DFSVKDAKGQDVDLSIY-KGK--LLLIVNV-A----SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE 142 (225)
Q Consensus 71 ~f~l~~~~G~~~~l~~~-~gk--~vlv~F~-~----twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~ 142 (225)
+..+.+.+| ..+|+++ .|| .+|..|. + -.||.|...+-.+.-...-+...++.++.||-- ..+
T Consensus 54 ~Y~Fe~~~G-~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRA--------Pl~ 124 (247)
T COG4312 54 DYVFETENG-KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRA--------PLE 124 (247)
T ss_pred eeEeecCCc-chhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecC--------cHH
Confidence 344555666 5788884 676 3333343 3 369999998888887777777778999999854 678
Q ss_pred HHHHHHHhhcCCCcceeeeec
Q 027311 143 QIQEFACTRFKAEFPIFDKVD 163 (225)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~d 163 (225)
++..+- ++.|-.||+++..+
T Consensus 125 ~l~~~k-~rmGW~f~w~Ss~~ 144 (247)
T COG4312 125 ELVAYK-RRMGWQFPWVSSTD 144 (247)
T ss_pred HHHHHH-HhcCCcceeEeccC
Confidence 888887 77788899986544
No 179
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=95.64 E-value=0.091 Score=42.87 Aligned_cols=42 Identities=12% Similarity=0.110 Sum_probs=34.9
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d 131 (225)
++.+|||.||-+.++.|...-..|..++.+|.. ++++.|...
T Consensus 145 ~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~--vKFvkI~a~ 186 (265)
T PF02114_consen 145 KSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE--VKFVKIRAS 186 (265)
T ss_dssp TT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT--SEEEEEEEC
T ss_pred CCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc--eEEEEEehh
Confidence 355899999999999999999999999999986 899998753
No 180
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.57 E-value=0.21 Score=38.19 Aligned_cols=55 Identities=20% Similarity=0.334 Sum_probs=45.7
Q ss_pred eCCCCCeecCCcc-C-CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEe
Q 027311 75 KDAKGQDVDLSIY-K-GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFP 129 (225)
Q Consensus 75 ~~~~G~~~~l~~~-~-gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is 129 (225)
.+..|+.+...++ + ++.+|....-..|-.|+++...|.++..-+...|+..++|-
T Consensus 35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg 91 (197)
T KOG4498|consen 35 LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVG 91 (197)
T ss_pred hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 5778999999996 3 44555555688999999999999999888888899999886
No 181
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.56 E-value=0.095 Score=47.42 Aligned_cols=39 Identities=10% Similarity=0.106 Sum_probs=28.3
Q ss_pred CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEe
Q 027311 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFP 129 (225)
Q Consensus 89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is 129 (225)
++..+-.|..++||.|+.....++++..+.+ ++..-.|.
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~ 514 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLNP--NVEAEMID 514 (555)
T ss_pred CCeEEEEEECCCCCCcHHHHHHHHHHHHhCC--CceEEEEE
Confidence 4444556679999999988888888888865 35544443
No 182
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=95.46 E-value=0.07 Score=33.58 Aligned_cols=32 Identities=13% Similarity=0.274 Sum_probs=22.0
Q ss_pred EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d 131 (225)
++.|.++||+.|......|.+ .++.+..+.+|
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~i~~~~~~i~ 33 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RGIPFEEVDVD 33 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CCCCeEEEeCC
Confidence 455788999999976555544 34666666665
No 183
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=95.29 E-value=0.05 Score=35.49 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=23.9
Q ss_pred EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d 131 (225)
|+.|..+|||.|......|+++.. .+.++-|..+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~ 35 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQH 35 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCC
Confidence 455778999999977777776544 2566666654
No 184
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=0.027 Score=44.09 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=34.2
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d 131 (225)
+++.+++.||+.||.+|......+..+.+.. .+++++.+..+
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~ 57 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAE 57 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh--hhheeeeehhh
Confidence 7889999999999999997777777777666 45888888765
No 185
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=94.71 E-value=0.081 Score=39.23 Aligned_cols=47 Identities=17% Similarity=0.197 Sum_probs=36.9
Q ss_pred CCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHH--hcCCeEEEEEecC
Q 027311 84 LSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKY--KNQGLEILAFPCN 131 (225)
Q Consensus 84 l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~--~~~~~~iv~Is~d 131 (225)
+-+-.++++|+.|+.-.||+|....+.+.++.+++ .+ .+.++..++.
T Consensus 7 ~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~~ 55 (162)
T PF13462_consen 7 IGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPVP 55 (162)
T ss_dssp ES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEESS
T ss_pred ecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEcc
Confidence 44445789999999999999999999999999998 33 3887777653
No 186
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=94.67 E-value=0.062 Score=35.74 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=28.9
Q ss_pred EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d 131 (225)
|..|+...||.|....+.+.++.....+ ++++.-..+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~~~ 38 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG-GVRVVYRPFP 38 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC-cEEEEEeccc
Confidence 3568889999999999999998855544 4776666554
No 187
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=94.65 E-value=0.12 Score=31.63 Aligned_cols=32 Identities=13% Similarity=0.249 Sum_probs=22.5
Q ss_pred EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d 131 (225)
|+.|..+|||.|......| .+.|+.+-.+.++
T Consensus 1 V~vy~~~~C~~C~~~~~~L-------~~~~i~y~~~dv~ 32 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFL-------DEKGIPYEEVDVD 32 (60)
T ss_dssp EEEEESTTSHHHHHHHHHH-------HHTTBEEEEEEGG
T ss_pred cEEEEcCCCcCHHHHHHHH-------HHcCCeeeEcccc
Confidence 4568889999999766655 3344666667766
No 188
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=94.56 E-value=0.2 Score=34.78 Aligned_cols=75 Identities=17% Similarity=0.348 Sum_probs=48.0
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (225)
..++++|+=-+|.||.....+.++++..++..++ +.+..+.+- ....+...+++++++
T Consensus 18 ~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v~--------~~R~vSn~IAe~~~V------------- 75 (105)
T PF11009_consen 18 KEKPVLIFKHSTRCPISAMALREFEKFWEESPDE-IPVYYLDVI--------EYRPVSNAIAEDFGV------------- 75 (105)
T ss_dssp --SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----EEEEEGG--------GGHHHHHHHHHHHT--------------
T ss_pred ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc-ceEEEEEEE--------eCchhHHHHHHHhCC-------------
Confidence 3678888777999999999999999999988765 666666553 345555555444322
Q ss_pred CchhhhhhccccCCCCCCCcccc-ceeEEEECCCCcEEEE
Q 027311 168 NAAPLYKHLKSSKGGLFGDSIKW-NFSKFLVDKEGNVVER 206 (225)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~-~P~~~lid~~G~I~~~ 206 (225)
.+ .|..+|| ++|++++-
T Consensus 76 ---------------------~HeSPQ~ili-~~g~~v~~ 93 (105)
T PF11009_consen 76 ---------------------KHESPQVILI-KNGKVVWH 93 (105)
T ss_dssp ------------------------SSEEEEE-ETTEEEEE
T ss_pred ---------------------CcCCCcEEEE-ECCEEEEE
Confidence 22 3888888 88999875
No 189
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=94.48 E-value=0.21 Score=31.93 Aligned_cols=33 Identities=9% Similarity=0.209 Sum_probs=22.7
Q ss_pred EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCC
Q 027311 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 132 (225)
Q Consensus 93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~ 132 (225)
+..|..+|||.|......|++ .++.+-.+.++.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~~ 34 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------KGVDYEEIDVDG 34 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------CCCcEEEEECCC
Confidence 345778999999976666654 346666666663
No 190
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=94.30 E-value=0.14 Score=34.11 Aligned_cols=37 Identities=8% Similarity=0.024 Sum_probs=25.7
Q ss_pred EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d 131 (225)
|+.|..+|||.|......|+++..++. ++.+.-++++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--~i~~~~idi~ 38 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA--DFEFRYIDIH 38 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC--CCcEEEEECC
Confidence 345778899999988888887765542 3555555554
No 191
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=94.28 E-value=0.39 Score=34.76 Aligned_cols=91 Identities=12% Similarity=0.045 Sum_probs=57.7
Q ss_pred CEEEEEEccc--CCC-CCh-HhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCC
Q 027311 90 KLLLIVNVAS--QCG-LTN-SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN 165 (225)
Q Consensus 90 k~vlv~F~~t--wC~-~C~-~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 165 (225)
+..+|.|..+ .|. -+. .....++++.++|+++.+.++.+..+. ...+. +.+++
T Consensus 21 ~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~--------~~~~~----~~fgl----------- 77 (130)
T cd02983 21 QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGA--------QLDLE----EALNI----------- 77 (130)
T ss_pred CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcc--------cHHHH----HHcCC-----------
Confidence 4666666532 344 344 335778888889988777887777652 11222 21111
Q ss_pred CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEE-cCCCCChhhHHHHHHhhhC
Q 027311 166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVER-YAPTTSPLSIEVVLECLCC 225 (225)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~-~~g~~~~~~l~~~l~~ll~ 225 (225)
.-...|+.++++.++. ++. +.|..+.+.+.+.++..++
T Consensus 78 ---------------------~~~~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~ 116 (130)
T cd02983 78 ---------------------GGFGYPAMVAINFRKM-KFATLKGSFSEDGINEFLRELSY 116 (130)
T ss_pred ---------------------CccCCCEEEEEecccC-ccccccCccCHHHHHHHHHHHHc
Confidence 0013588899998876 666 6788888999998888763
No 192
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=93.98 E-value=0.21 Score=31.11 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=22.3
Q ss_pred EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d 131 (225)
|+.|..+|||.|......|++.. +.+.-++++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-------i~~~~~di~ 33 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-------IEFEEIDIL 33 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-------CcEEEEECC
Confidence 44578899999997777766543 555556655
No 193
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=93.92 E-value=0.19 Score=32.58 Aligned_cols=20 Identities=15% Similarity=0.184 Sum_probs=15.5
Q ss_pred EEEcccCCCCChHhHHHHHH
Q 027311 94 IVNVASQCGLTNSNYTELSQ 113 (225)
Q Consensus 94 v~F~~twC~~C~~~~~~l~~ 113 (225)
..|+.+|||.|......|++
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~ 21 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSS 21 (79)
T ss_pred EEEecCCChhHHHHHHHHHH
Confidence 45778999999977766654
No 194
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.72 E-value=0.083 Score=41.33 Aligned_cols=44 Identities=20% Similarity=0.050 Sum_probs=37.5
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d 131 (225)
+.+.-+|.|++.|.|-|+...|-+.++-.+|...++.+=.|.+.
T Consensus 143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiG 186 (265)
T KOG0914|consen 143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIG 186 (265)
T ss_pred CceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeec
Confidence 44588999999999999999999999999998877776666544
No 195
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.59 E-value=0.51 Score=41.21 Aligned_cols=66 Identities=6% Similarity=0.119 Sum_probs=50.4
Q ss_pred CceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCC
Q 027311 66 KTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 132 (225)
Q Consensus 66 g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~ 132 (225)
+..+-...+.-.+|+.+++.+++|..-+|-.-++- ..|...+...+...+++.++||-||-|..+.
T Consensus 273 ee~L~rL~v~l~~~~~v~l~~LRg~~RvvIvAG~~-e~v~~al~~ae~~r~~L~~r~VlvVPv~~~~ 338 (453)
T PLN03098 273 DETLSRLPVRLSTNRIVELVQLRDITRPVILAGTK-ESVTLAMQKAERYRTELLKRGVLLIPVVWGE 338 (453)
T ss_pred hhhhccceEeccCCCEEeHHHhcCcceEEEEECCH-HHHHHHHHHhHHHHHHHHHcCcEEEEEecCC
Confidence 34455555555578899999999986555444443 5788888999999999999999999998774
No 196
>PHA03050 glutaredoxin; Provisional
Probab=93.51 E-value=0.12 Score=36.08 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=16.9
Q ss_pred EEEEcccCCCCChHhHHHHHHHH
Q 027311 93 LIVNVASQCGLTNSNYTELSQLY 115 (225)
Q Consensus 93 lv~F~~twC~~C~~~~~~l~~l~ 115 (225)
|+.|..+|||+|......|++..
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~ 37 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFS 37 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcC
Confidence 44588999999997666665543
No 197
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=93.26 E-value=0.52 Score=30.02 Aligned_cols=31 Identities=13% Similarity=0.157 Sum_probs=21.5
Q ss_pred EEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311 94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 94 v~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d 131 (225)
+.|..+|||.|......|++ .|+.+-.+.++
T Consensus 4 ~ly~~~~C~~C~ka~~~L~~-------~gi~~~~~di~ 34 (73)
T cd03027 4 TIYSRLGCEDCTAVRLFLRE-------KGLPYVEINID 34 (73)
T ss_pred EEEecCCChhHHHHHHHHHH-------CCCceEEEECC
Confidence 34667999999977766664 34556666665
No 198
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=93.23 E-value=0.72 Score=41.37 Aligned_cols=65 Identities=9% Similarity=0.080 Sum_probs=42.1
Q ss_pred ccCCCceecCe--EEeCCCCCeecCCc--------cCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEE
Q 027311 62 ASQSKTSVHDF--SVKDAKGQDVDLSI--------YKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAF 128 (225)
Q Consensus 62 ~~~~g~~~p~f--~l~~~~G~~~~l~~--------~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~I 128 (225)
+...|...-.| .+.+..|....|++ ..++.-+-.|....||+|+.....++++..+.+ ++..-.|
T Consensus 79 g~P~g~Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~--~i~~~~i 153 (517)
T PRK15317 79 GIPMGHEFTSLVLALLQVGGHPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP--NITHTMI 153 (517)
T ss_pred ecCccHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC--CceEEEE
Confidence 34455555554 33445555555554 234455777889999999998899988888755 3665555
No 199
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=92.83 E-value=0.38 Score=31.34 Aligned_cols=35 Identities=14% Similarity=0.290 Sum_probs=24.0
Q ss_pred CEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311 90 KLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 90 k~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d 131 (225)
+.-|+.|..+|||.|.+....|++ .|+.+..++++
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~-------~gi~y~~idi~ 41 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKE-------KGYDFEEIPLG 41 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHH-------cCCCcEEEECC
Confidence 344556889999999977776653 34655566665
No 200
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=92.52 E-value=0.19 Score=39.32 Aligned_cols=43 Identities=7% Similarity=0.063 Sum_probs=33.3
Q ss_pred CCCEEEEEEcccCCCCChHhHHHH---HHHHHHHhcCCeEEEEEecC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTEL---SQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l---~~l~~~~~~~~~~iv~Is~d 131 (225)
.|++.|+.|+.-.||+|...-+.+ .++.+.++++ +.++-+.+.
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~-v~~~~~~~~ 81 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEG-TKMTKYHVE 81 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCC-CeEEEeccc
Confidence 478889999999999999877765 7788887654 676666553
No 201
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=92.37 E-value=0.11 Score=41.03 Aligned_cols=40 Identities=15% Similarity=0.186 Sum_probs=28.2
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEE
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAF 128 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~I 128 (225)
.|-+ ++.|.++|||.|..-.+++.++..--.+.++.+--|
T Consensus 39 ~gew-mi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~V 78 (248)
T KOG0913|consen 39 TGEW-MIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKV 78 (248)
T ss_pred chHH-HHHhcCCCCccccchHHHHhccCCccCCCceeEEEE
Confidence 4544 456999999999998888888776555555444433
No 202
>PRK10329 glutaredoxin-like protein; Provisional
Probab=92.27 E-value=0.59 Score=30.75 Aligned_cols=32 Identities=6% Similarity=0.295 Sum_probs=22.7
Q ss_pred EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d 131 (225)
+.-|..+|||.|......|. ++|+.+-.+.++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~-------~~gI~~~~idi~ 34 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAME-------SRGFDFEMINVD 34 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHH-------HCCCceEEEECC
Confidence 34577899999997666553 356777777776
No 203
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=92.24 E-value=0.92 Score=41.11 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=24.7
Q ss_pred ccccceeEEEECCCCc---EEEEcCCCCChhhHHHHHHhhhC
Q 027311 187 SIKWNFSKFLVDKEGN---VVERYAPTTSPLSIEVVLECLCC 225 (225)
Q Consensus 187 ~v~~~P~~~lid~~G~---I~~~~~g~~~~~~l~~~l~~ll~ 225 (225)
++...|++.|.|.+|+ |+ |.|.....++...|..|++
T Consensus 416 ~v~~~P~~~i~~~~~~~~~i~--f~g~P~G~Ef~s~i~~i~~ 455 (555)
T TIGR03143 416 KITKLPTVALLDDDGNYTGLK--FHGVPSGHELNSFILALYN 455 (555)
T ss_pred CCCcCCEEEEEeCCCcccceE--EEecCccHhHHHHHHHHHH
Confidence 5666788888876653 54 4455556677777777653
No 204
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=91.15 E-value=1.7 Score=39.04 Aligned_cols=65 Identities=12% Similarity=0.121 Sum_probs=41.2
Q ss_pred ccCCCceecCe--EEeCCCCCeecCCc--------cCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEE
Q 027311 62 ASQSKTSVHDF--SVKDAKGQDVDLSI--------YKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAF 128 (225)
Q Consensus 62 ~~~~g~~~p~f--~l~~~~G~~~~l~~--------~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~I 128 (225)
+...|.....| .+.+..|....|++ ..++.-+-.|....||+|+.....++++..+.+ ++..-.|
T Consensus 80 g~P~g~Ef~s~i~~i~~~~~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p--~i~~~~i 154 (515)
T TIGR03140 80 GIPGGHEFTSLVLAILQVGGHGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP--NISHTMI 154 (515)
T ss_pred ecCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC--CceEEEE
Confidence 34445554444 33445555555544 234556777889999999988888888888765 3554444
No 205
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=90.89 E-value=0.72 Score=29.33 Aligned_cols=31 Identities=13% Similarity=0.233 Sum_probs=22.0
Q ss_pred EEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311 94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 94 v~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d 131 (225)
..|..++||.|......|++ .|+.+-.+.++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~~di~ 32 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------HGIAFEEINID 32 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CCCceEEEECC
Confidence 34668899999977777753 45666666665
No 206
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=90.69 E-value=0.72 Score=31.58 Aligned_cols=21 Identities=14% Similarity=0.197 Sum_probs=14.7
Q ss_pred EEEEcccCCCCChHhHHHHHH
Q 027311 93 LIVNVASQCGLTNSNYTELSQ 113 (225)
Q Consensus 93 lv~F~~twC~~C~~~~~~l~~ 113 (225)
|+.|..+|||.|.+.-..|++
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~ 30 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLT 30 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 334788999999966554443
No 207
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=90.44 E-value=1.9 Score=32.43 Aligned_cols=42 Identities=19% Similarity=0.239 Sum_probs=26.1
Q ss_pred CCE-EEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311 89 GKL-LLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 89 gk~-vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d 131 (225)
+++ +++.|..............++++.++++++ +.++.+..+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~-~~f~~~d~~ 136 (184)
T PF13848_consen 94 PKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK-INFVYVDAD 136 (184)
T ss_dssp SSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT-SEEEEEETT
T ss_pred CCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe-EEEEEeehH
Confidence 445 555554444445566667777788777765 677766544
No 208
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=90.32 E-value=1.9 Score=37.21 Aligned_cols=38 Identities=13% Similarity=0.054 Sum_probs=34.3
Q ss_pred ccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311 187 SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC 224 (225)
Q Consensus 187 ~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll 224 (225)
-+..+|..|+|+..|+-+.+..|....++|...|++.+
T Consensus 74 p~v~vPs~ffIg~sGtpLevitg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 74 PYVSVPSIFFIGFSGTPLEVITGFVTADELASSIEKVW 111 (506)
T ss_pred ccccccceeeecCCCceeEEeeccccHHHHHHHHHHHH
Confidence 67778999999999999999999999999999988753
No 209
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=90.06 E-value=2 Score=29.26 Aligned_cols=36 Identities=14% Similarity=0.196 Sum_probs=21.5
Q ss_pred CCEEEEEEc----ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311 89 GKLLLIVNV----ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 89 gk~vlv~F~----~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d 131 (225)
.+.|+|+-. .+|||+|...-..|++. |+.+..+.++
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-------~i~~~~~di~ 50 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC-------GVPFAYVNVL 50 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHc-------CCCEEEEECC
Confidence 445666443 27999999666665553 3444455554
No 210
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=89.99 E-value=1.1 Score=28.31 Aligned_cols=32 Identities=13% Similarity=0.283 Sum_probs=21.5
Q ss_pred EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d 131 (225)
++-|..+|||.|.+....|++ .|+.+..++++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~~i~~~~~~v~ 34 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------NGISYEEIPLG 34 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cCCCcEEEECC
Confidence 344678999999987666653 34555556655
No 211
>PRK10638 glutaredoxin 3; Provisional
Probab=88.77 E-value=2.1 Score=27.96 Aligned_cols=31 Identities=13% Similarity=0.343 Sum_probs=20.4
Q ss_pred EEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311 94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 94 v~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d 131 (225)
..|..+|||.|......|++ .|+.+-.+.+|
T Consensus 5 ~ly~~~~Cp~C~~a~~~L~~-------~gi~y~~~dv~ 35 (83)
T PRK10638 5 EIYTKATCPFCHRAKALLNS-------KGVSFQEIPID 35 (83)
T ss_pred EEEECCCChhHHHHHHHHHH-------cCCCcEEEECC
Confidence 34667899999977666664 23555556665
No 212
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=88.61 E-value=2.5 Score=28.24 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=16.9
Q ss_pred CCCEEEEEEcc----cCCCCChHhHHHHHHH
Q 027311 88 KGKLLLIVNVA----SQCGLTNSNYTELSQL 114 (225)
Q Consensus 88 ~gk~vlv~F~~----twC~~C~~~~~~l~~l 114 (225)
++++|+|+--. +|||.|......|++.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~ 36 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQL 36 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc
Confidence 45566664322 5999999766665554
No 213
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=88.46 E-value=1.5 Score=28.79 Aligned_cols=31 Identities=10% Similarity=0.229 Sum_probs=20.8
Q ss_pred EEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311 94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 94 v~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d 131 (225)
+.|--++||.|.+.-..|. .+|+.+.-|.++
T Consensus 4 ~iyt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~ 34 (80)
T COG0695 4 TIYTKPGCPYCKRAKRLLD-------RKGVDYEEIDVD 34 (80)
T ss_pred EEEECCCCchHHHHHHHHH-------HcCCCcEEEEec
Confidence 4466789999997766666 345655555555
No 214
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=88.30 E-value=5.4 Score=36.69 Aligned_cols=23 Identities=17% Similarity=0.095 Sum_probs=19.9
Q ss_pred cCCCEEEEEEcccCCCCChHhHH
Q 027311 87 YKGKLLLIVNVASQCGLTNSNYT 109 (225)
Q Consensus 87 ~~gk~vlv~F~~twC~~C~~~~~ 109 (225)
-++||++|...++||-.|.-+..
T Consensus 41 ~edkPIflSIGys~CHWChVM~~ 63 (667)
T COG1331 41 EEDKPILLSIGYSTCHWCHVMAH 63 (667)
T ss_pred HhCCCEEEEeccccccchHHHhh
Confidence 36899999999999999996654
No 215
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.17 E-value=1.7 Score=28.10 Aligned_cols=42 Identities=10% Similarity=0.103 Sum_probs=29.1
Q ss_pred EEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHH
Q 027311 94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFAC 149 (225)
Q Consensus 94 v~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~ 149 (225)
+-|++..||-|......|+++.-. ...|-|.. +...+++|++
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~-----yd~VeIt~---------Sm~NlKrFl~ 46 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVD-----YDFVEITE---------SMANLKRFLH 46 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCC-----ceeeehhh---------hhhhHHHHHh
Confidence 448899999999877777665432 44444432 6788898873
No 216
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=87.70 E-value=2.2 Score=30.55 Aligned_cols=42 Identities=14% Similarity=-0.035 Sum_probs=32.9
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEec
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC 130 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~ 130 (225)
..|.+||-|.-.|-|.|...=..|.++.+...+- .+|.-+.+
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf-a~Iylvdi 63 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF-AVIYLVDI 63 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc-eEEEEEec
Confidence 4589999999999999999889999999888653 33443433
No 217
>KOG4614 consensus Inner membrane protein required for assembly of the F0 sector of ATP synthase [Posttranslational modification, protein turnover, chaperones]
Probab=86.93 E-value=1.1 Score=35.51 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=24.7
Q ss_pred eEEEECCCCcEEEEcCCCCChhhHHHHHH
Q 027311 193 SKFLVDKEGNVVERYAPTTSPLSIEVVLE 221 (225)
Q Consensus 193 ~~~lid~~G~I~~~~~g~~~~~~l~~~l~ 221 (225)
.++|||+.|+|++...|..+++++++.+.
T Consensus 250 yV~L~D~s~kIRW~g~G~aTp~Eve~L~~ 278 (287)
T KOG4614|consen 250 YVLLLDKSGKIRWQGFGTATPEEVEQLLS 278 (287)
T ss_pred EEEEEccCceEEEeecCCCCHHHHHHHHH
Confidence 56899999999999999999987776554
No 218
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=86.44 E-value=3.9 Score=31.59 Aligned_cols=74 Identities=15% Similarity=0.086 Sum_probs=55.8
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (225)
+..-||+.||-..-..|+..-.+|..+.+.+-+ .+++-|+.. +-|++
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e--TrFikvnae-----------------------~~PFl-------- 129 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE--TRFIKVNAE-----------------------KAPFL-------- 129 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhccc--ceEEEEecc-----------------------cCcee--------
Confidence 456899999988878999999999999988754 788888742 12333
Q ss_pred CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC
Q 027311 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT 210 (225)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~ 210 (225)
..++ +|..+|+..++ ++|..+.+.+|.
T Consensus 130 -v~kL--------------~IkVLP~v~l~-k~g~~~D~iVGF 156 (211)
T KOG1672|consen 130 -VTKL--------------NIKVLPTVALF-KNGKTVDYVVGF 156 (211)
T ss_pred -eeee--------------eeeEeeeEEEE-EcCEEEEEEeeH
Confidence 1111 77778998888 889998888764
No 219
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=86.26 E-value=2 Score=34.28 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=39.4
Q ss_pred EeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEE
Q 027311 74 VKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEIL 126 (225)
Q Consensus 74 l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv 126 (225)
....+|.....-+..++++++.|..--||+|.+.++.+.+.+...++..+.+.
T Consensus 69 ~~~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~~ 121 (244)
T COG1651 69 YLTPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVLR 121 (244)
T ss_pred eecCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcCCCceEEE
Confidence 33445555555555668999999999999999999999998877776544333
No 220
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=86.07 E-value=5.1 Score=28.02 Aligned_cols=32 Identities=13% Similarity=-0.040 Sum_probs=21.8
Q ss_pred ceeEEEECCCCcEEEEcCCCC-ChhhHHHHHHhh
Q 027311 191 NFSKFLVDKEGNVVERYAPTT-SPLSIEVVLECL 223 (225)
Q Consensus 191 ~P~~~lid~~G~I~~~~~g~~-~~~~l~~~l~~l 223 (225)
.|...+++.++ -.+...+.. +.+.|.+.++..
T Consensus 78 ~P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 78 KPVVAIRTAKG-KKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred CCEEEEEeCCC-CccCCCcccCCHHHHHHHHHHh
Confidence 57878888766 344455566 777888777654
No 221
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=85.22 E-value=2 Score=30.31 Aligned_cols=50 Identities=12% Similarity=0.198 Sum_probs=33.7
Q ss_pred EEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCc
Q 027311 95 VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEF 156 (225)
Q Consensus 95 ~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (225)
.|+.++|+.|+.....|++ .|+.+..+++. .++.+.+++.+++ +..+..+
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~----~~~~~~~el~~l~-~~~~~~~ 52 (117)
T TIGR01617 3 VYGSPNCTTCKKARRWLEA-------NGIEYQFIDIG----EDGPTREELLDIL-SLLEDGI 52 (117)
T ss_pred EEeCCCCHHHHHHHHHHHH-------cCCceEEEecC----CChhhHHHHHHHH-HHcCCCH
Confidence 4668899999987776665 34555556654 2445778888887 5555444
No 222
>PRK10824 glutaredoxin-4; Provisional
Probab=85.14 E-value=3.6 Score=29.09 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=17.2
Q ss_pred CCEEEEEEcc----cCCCCChHhHHHHHHH
Q 027311 89 GKLLLIVNVA----SQCGLTNSNYTELSQL 114 (225)
Q Consensus 89 gk~vlv~F~~----twC~~C~~~~~~l~~l 114 (225)
.++|||+--. +|||+|.+....|+++
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSAC 43 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHc
Confidence 4566664333 4999999776666554
No 223
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=84.37 E-value=15 Score=27.62 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=33.2
Q ss_pred CceecCeEEeCC-CCCeecCCcc---CCCEEEEEEcccCCCCChHhHHHHHHHHHHH
Q 027311 66 KTSVHDFSVKDA-KGQDVDLSIY---KGKLLLIVNVASQCGLTNSNYTELSQLYDKY 118 (225)
Q Consensus 66 g~~~p~f~l~~~-~G~~~~l~~~---~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~ 118 (225)
|.-+|++.++.. +|+++.|.+. .|++-|+.|-..-- +......+.++.+.+
T Consensus 1 G~R~~~a~V~r~aD~~p~~L~~~~~adGrfrI~vFagd~~--~~~~~~~l~~~~~~L 55 (167)
T cd02979 1 GRRFPSAPVVRQADALPVHLGHRLPADGRFRIYVFAGDIA--PAQQKSRLTQLCDAL 55 (167)
T ss_pred CCcCCCceEEEecCCCCHhHhhhccCCCCEEEEEEcCCCC--chhHHHHHHHHHHHH
Confidence 556788877775 8888888773 69999998865432 233334444444443
No 224
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=82.92 E-value=12 Score=26.13 Aligned_cols=34 Identities=6% Similarity=-0.159 Sum_probs=22.8
Q ss_pred ceeEEEECCCCcEEEE-cCCCCChhhHHHHHHhhh
Q 027311 191 NFSKFLVDKEGNVVER-YAPTTSPLSIEVVLECLC 224 (225)
Q Consensus 191 ~P~~~lid~~G~I~~~-~~g~~~~~~l~~~l~~ll 224 (225)
.|...+++-++.-.+. ..+..+++.+++.++..+
T Consensus 74 ~P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~ 108 (111)
T cd03072 74 LPVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLH 108 (111)
T ss_pred CCEEEEEcchhcCcCCCCccccCHHHHHHHHHHHh
Confidence 4777777776533344 445667788888888765
No 225
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=82.43 E-value=3.3 Score=28.43 Aligned_cols=48 Identities=17% Similarity=0.337 Sum_probs=30.0
Q ss_pred EEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcC
Q 027311 94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFK 153 (225)
Q Consensus 94 v~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~ 153 (225)
..|..++|+.|+.....|++ .|+.+-.+++. ..+.+.+++.++. ...+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~----~~~~~~~~l~~~~-~~~~ 49 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE-------HGIEYEFIDYL----KEPPTKEELKELL-AKLG 49 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cCCCcEEEeec----cCCCCHHHHHHHH-HhcC
Confidence 34668899999977655554 33444444443 2344778888887 4444
No 226
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=82.14 E-value=3.1 Score=29.00 Aligned_cols=48 Identities=15% Similarity=0.277 Sum_probs=30.6
Q ss_pred EEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCC
Q 027311 95 VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKA 154 (225)
Q Consensus 95 ~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~ 154 (225)
.|..++|+.|++....|++ .|+.+-.+.+. ..+.+.+++.+++ +..+.
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~----~~~~~~~el~~~~-~~~~~ 50 (111)
T cd03036 3 FYEYPKCSTCRKAKKWLDE-------HGVDYTAIDIV----EEPPSKEELKKWL-EKSGL 50 (111)
T ss_pred EEECCCCHHHHHHHHHHHH-------cCCceEEeccc----CCcccHHHHHHHH-HHcCC
Confidence 3668899999977766655 34555555544 2344778888887 44443
No 227
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=79.95 E-value=3.9 Score=28.30 Aligned_cols=48 Identities=8% Similarity=0.131 Sum_probs=31.0
Q ss_pred EEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcC
Q 027311 94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFK 153 (225)
Q Consensus 94 v~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~ 153 (225)
..|..++|+.|+.....|++. |+.+-.+.+. .++-+.+++.+++ ++.+
T Consensus 2 ~iy~~~~C~~crka~~~L~~~-------~i~~~~~di~----~~p~s~~eL~~~l-~~~g 49 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR-------GVAYTFHDYR----KDGLDAATLERWL-AKVG 49 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-------CCCeEEEecc----cCCCCHHHHHHHH-HHhC
Confidence 346689999999776665543 3433344433 2445889999998 4545
No 228
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=79.59 E-value=5.8 Score=27.79 Aligned_cols=49 Identities=10% Similarity=0.141 Sum_probs=32.0
Q ss_pred EEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCC
Q 027311 95 VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAE 155 (225)
Q Consensus 95 ~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~ 155 (225)
.|..++|+.|++....|++ .|+.+-.+.+. .++.+.+++.+++ +..+.+
T Consensus 4 iY~~~~C~~c~ka~~~L~~-------~gi~~~~idi~----~~~~~~~el~~~~-~~~~~~ 52 (115)
T cd03032 4 LYTSPSCSSCRKAKQWLEE-------HQIPFEERNLF----KQPLTKEELKEIL-SLTENG 52 (115)
T ss_pred EEeCCCCHHHHHHHHHHHH-------CCCceEEEecC----CCcchHHHHHHHH-HHhcCC
Confidence 4567899999977666655 34555555553 2344788899888 554444
No 229
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=78.91 E-value=7.1 Score=27.06 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=26.8
Q ss_pred CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHH
Q 027311 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFA 148 (225)
Q Consensus 89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~ 148 (225)
.++||+ |--+|||.|.. ++++...+ ++....+-+|.. ....++++++
T Consensus 13 ~~~VVi-fSKs~C~~c~~----~k~ll~~~---~v~~~vvELD~~-----~~g~eiq~~l 59 (104)
T KOG1752|consen 13 ENPVVI-FSKSSCPYCHR----AKELLSDL---GVNPKVVELDED-----EDGSEIQKAL 59 (104)
T ss_pred cCCEEE-EECCcCchHHH----HHHHHHhC---CCCCEEEEccCC-----CCcHHHHHHH
Confidence 345555 78899999996 34444333 343444444431 1445777666
No 230
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=78.08 E-value=4.2 Score=29.35 Aligned_cols=50 Identities=8% Similarity=0.076 Sum_probs=31.1
Q ss_pred EEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCC
Q 027311 94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAE 155 (225)
Q Consensus 94 v~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~ 155 (225)
..|..++|+.|++....|++ .|+.+-.+.+. ..+.+.+++.+++ +..+.+
T Consensus 3 ~iY~~~~C~~C~ka~~~L~~-------~gi~~~~idi~----~~~~~~~eL~~~l-~~~~~g 52 (131)
T PRK01655 3 TLFTSPSCTSCRKAKAWLEE-------HDIPFTERNIF----SSPLTIDEIKQIL-RMTEDG 52 (131)
T ss_pred EEEeCCCChHHHHHHHHHHH-------cCCCcEEeecc----CChhhHHHHHHHH-HHhcCC
Confidence 34568899999986655443 34555555543 2344778888888 544433
No 231
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=76.03 E-value=0.54 Score=37.60 Aligned_cols=32 Identities=3% Similarity=-0.053 Sum_probs=24.5
Q ss_pred ccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311 187 SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC 224 (225)
Q Consensus 187 ~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll 224 (225)
++.++|++|+-|+ .+.|..+.+++++.|+..+
T Consensus 212 gv~gTPt~~v~~~------~~~g~~~~~~l~~~i~~~~ 243 (244)
T COG1651 212 GVNGTPTFIVNGK------LVPGLPDLDELKAIIDEAL 243 (244)
T ss_pred CCCcCCeEEECCe------eecCCCCHHHHHHHHHHhh
Confidence 7999999777655 4566666888888887764
No 232
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=75.67 E-value=10 Score=28.69 Aligned_cols=61 Identities=13% Similarity=0.160 Sum_probs=45.1
Q ss_pred CEEEEEEcccCCC-CChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCccee
Q 027311 90 KLLLIVNVASQCG-LTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIF 159 (225)
Q Consensus 90 k~vlv~F~~twC~-~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (225)
|.+++++=.|=-| --....|+++++.++.++.|+.++-+|-. +...+..++ ++.+++|-+-
T Consensus 29 kgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn--------~e~RV~~~~-~~l~v~fi~~ 90 (175)
T COG2179 29 KGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIKVVVVSNN--------KESRVARAA-EKLGVPFIYR 90 (175)
T ss_pred cEEEEeccCceecccCCCCCHHHHHHHHHHHhcCCEEEEEeCC--------CHHHHHhhh-hhcCCceeec
Confidence 4677777665333 33455799999999999999999988754 677888777 7777776553
No 233
>PHA03075 glutaredoxin-like protein; Provisional
Probab=75.34 E-value=2.6 Score=29.61 Aligned_cols=38 Identities=29% Similarity=0.359 Sum_probs=28.0
Q ss_pred CEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEE
Q 027311 90 KLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILA 127 (225)
Q Consensus 90 k~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~ 127 (225)
|.++|-|.-+-|+.|...-..|.++..+|.=..+.|++
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlS 39 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYDILRVNILS 39 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeee
Confidence 56788899999999998888887777776432233433
No 234
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=75.32 E-value=7.3 Score=33.97 Aligned_cols=32 Identities=3% Similarity=0.170 Sum_probs=21.3
Q ss_pred EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d 131 (225)
|+.|..+|||.|.+.-..|++ .|+..-.|.+|
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~-------~gi~~~~idi~ 35 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA-------NDIPFTQISLD 35 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCCeEEEECC
Confidence 455788999999965555544 34555556665
No 235
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=74.67 E-value=15 Score=28.51 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=39.9
Q ss_pred EEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceee
Q 027311 91 LLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFD 160 (225)
Q Consensus 91 ~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (225)
-.+..|.-..|+.|...+..+.. .+..+.|..|-.+. +.+.+..|+ .+++++-..+.
T Consensus 110 ~rlalFvkd~C~~C~~~~~~l~a-----~~~~~Diylvgs~~-------dD~~Ir~WA-~~~~Idp~~V~ 166 (200)
T TIGR03759 110 GRLALFVKDDCVACDARVQRLLA-----DNAPLDLYLVGSQG-------DDERIRQWA-NRHQIDPAKVR 166 (200)
T ss_pred CeEEEEeCCCChHHHHHHHHHhc-----CCCceeEEEecCCC-------CHHHHHHHH-HHcCCCHHHee
Confidence 34555667899999988877733 33457777665332 779999999 78888766553
No 236
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=74.64 E-value=29 Score=28.47 Aligned_cols=63 Identities=16% Similarity=0.149 Sum_probs=38.6
Q ss_pred CCCceecCeEEeCCCCCeecCCccCC-CEEEEEEcccCCCCChHhHHHHHHHHHHHh--cCCeEEEEEecC
Q 027311 64 QSKTSVHDFSVKDAKGQDVDLSIYKG-KLLLIVNVASQCGLTNSNYTELSQLYDKYK--NQGLEILAFPCN 131 (225)
Q Consensus 64 ~~g~~~p~f~l~~~~G~~~~l~~~~g-k~vlv~F~~twC~~C~~~~~~l~~l~~~~~--~~~~~iv~Is~d 131 (225)
+.=+.+|-|.++|.+|..+-.+.-.| +.+-++|.-. -..-..+++++.+-+ ..+++|+.|+++
T Consensus 77 ekL~~VPVFtItn~~G~pvl~s~~~~~~~~gvf~s~q-----edA~afL~~lk~~~p~l~~~~kV~pvsL~ 142 (270)
T TIGR00995 77 KILAGTSVFTVSNAQNEFVLASDNDGEKSIGLLCFRQ-----EDAEAFLAQLRKRKPEVGSQAKVVPITLD 142 (270)
T ss_pred HHhcCCceEEEEcCCCCeEEEECCCCCceEEEEECCH-----HHHHHHHHHHHhhCccccCCceEEEEEHH
Confidence 33457899999999999987776544 5555533210 112234445544433 235899999876
No 237
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=73.79 E-value=11 Score=27.30 Aligned_cols=43 Identities=14% Similarity=0.022 Sum_probs=34.6
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d 131 (225)
..|+++|-|.-.|-|.|...=..|.+..++.++- ..|..+.++
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~-a~IY~vDi~ 61 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF-AVIYLVDID 61 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT-EEEEEEETT
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc-eEEEEEEcc
Confidence 4789999999999999999889999999988754 556666654
No 238
>PRK12559 transcriptional regulator Spx; Provisional
Probab=73.37 E-value=9 Score=27.65 Aligned_cols=46 Identities=4% Similarity=0.095 Sum_probs=29.8
Q ss_pred EEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhh
Q 027311 94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTR 151 (225)
Q Consensus 94 v~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~ 151 (225)
..|..++|+.|++....|++ .|+.+-.+.+. ..+.+.+++.+++ +.
T Consensus 3 ~iY~~~~C~~crkA~~~L~~-------~gi~~~~~di~----~~~~s~~el~~~l-~~ 48 (131)
T PRK12559 3 VLYTTASCASCRKAKAWLEE-------NQIDYTEKNIV----SNSMTVDELKSIL-RL 48 (131)
T ss_pred EEEeCCCChHHHHHHHHHHH-------cCCCeEEEEee----CCcCCHHHHHHHH-HH
Confidence 34668899999986655543 24444444443 2345889999998 44
No 239
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=72.24 E-value=4.5 Score=26.37 Aligned_cols=52 Identities=12% Similarity=0.301 Sum_probs=35.2
Q ss_pred EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCccee
Q 027311 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIF 159 (225)
Q Consensus 93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (225)
|+.|....|+-|-.....|.++..+ .++.+-.|.++ +.+++. ++|+..-|++
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~---~~~~l~~vDI~--------~d~~l~----~~Y~~~IPVl 53 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE---FPFELEEVDID--------EDPELF----EKYGYRIPVL 53 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT---STCEEEEEETT--------TTHHHH----HHSCTSTSEE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh---cCceEEEEECC--------CCHHHH----HHhcCCCCEE
Confidence 4556788999999777777765543 34888888877 333332 6777777776
No 240
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=72.04 E-value=5.8 Score=32.07 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=29.1
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ 121 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~ 121 (225)
.||+.+++.-+-|||.|-.+.=.|-....+|++-
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~ 90 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSRFGNF 90 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHhcCCe
Confidence 6999999999999999998887777777777763
No 241
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=71.60 E-value=38 Score=25.33 Aligned_cols=104 Identities=10% Similarity=0.099 Sum_probs=57.7
Q ss_pred ceecCeEEeCCCCCeecCCccCC-CEEEEEEcccCC-------CCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCC
Q 027311 67 TSVHDFSVKDAKGQDVDLSIYKG-KLLLIVNVASQC-------GLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEP 138 (225)
Q Consensus 67 ~~~p~f~l~~~~G~~~~l~~~~g-k~vlv~F~~twC-------~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~ 138 (225)
...|..++.+..--++...+++| |.+|++ -..| .....+++.+++++..|+++++.+++=|.- ..+.
T Consensus 20 ~~~Ph~~vptf~~ip~~I~~~~~ikavVlD--KDNcit~P~~~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG---~~~~ 94 (190)
T KOG2961|consen 20 FVLPHVSVPTFRYIPWEILKRKGIKAVVLD--KDNCITAPYSLAIWPPLLPSIERCKAVYGEKDIAVFSNSAG---LTEY 94 (190)
T ss_pred eeccccccCccccCCcchhhccCceEEEEc--CCCeeeCCcccccCchhHHHHHHHHHHhCcccEEEEecCcC---cccc
Confidence 34455555554444455555555 445543 2222 246678999999999999888888776543 2233
Q ss_pred CCHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhcc
Q 027311 139 GDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK 177 (225)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 177 (225)
|...+..+.++++ ...|++........-..+.+.++-
T Consensus 95 D~d~s~Ak~le~k--~gIpVlRHs~kKP~ct~E~~~y~~ 131 (190)
T KOG2961|consen 95 DHDDSKAKALEAK--IGIPVLRHSVKKPACTAEEVEYHF 131 (190)
T ss_pred CCchHHHHHHHHh--hCCceEeecccCCCccHHHHHHHh
Confidence 3444444444344 445666444444444455565543
No 242
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=69.91 E-value=26 Score=26.43 Aligned_cols=73 Identities=12% Similarity=0.160 Sum_probs=45.9
Q ss_pred CcccccCCCceecCeEEeCC-CCCeecCCcc---CCCEEEEEEcccC-CCCChHhHHHHHHHH-------HHHhcC----
Q 027311 58 DHTMASQSKTSVHDFSVKDA-KGQDVDLSIY---KGKLLLIVNVASQ-CGLTNSNYTELSQLY-------DKYKNQ---- 121 (225)
Q Consensus 58 ~~~~~~~~g~~~p~f~l~~~-~G~~~~l~~~---~gk~vlv~F~~tw-C~~C~~~~~~l~~l~-------~~~~~~---- 121 (225)
..+..+.+|+.+|+..++.. ||+++.|.+. .|++-|+.|-... .+.+...+..+.+.. .+|...
T Consensus 25 ~~a~~l~~G~Rlp~~~v~r~aD~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~ 104 (169)
T PF07976_consen 25 SLAGGLRPGRRLPSAKVVRHADGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDP 104 (169)
T ss_dssp GGBTTS-TTCB----EEEETTTTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-T
T ss_pred ccccCcCCccccCCceEEEEcCCCChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCC
Confidence 34566799999999999875 9999999874 7999998887553 345555566665543 344432
Q ss_pred --CeEEEEEec
Q 027311 122 --GLEILAFPC 130 (225)
Q Consensus 122 --~~~iv~Is~ 130 (225)
-++++.|..
T Consensus 105 ~s~~~~~~I~~ 115 (169)
T PF07976_consen 105 DSVFDVLLIHS 115 (169)
T ss_dssp TSSEEEEEEES
T ss_pred CCeeEEEEEec
Confidence 278888874
No 243
>PTZ00062 glutaredoxin; Provisional
Probab=69.20 E-value=20 Score=28.05 Aligned_cols=37 Identities=14% Similarity=0.288 Sum_probs=21.0
Q ss_pred CCCEEEEEEcc----cCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311 88 KGKLLLIVNVA----SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 88 ~gk~vlv~F~~----twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d 131 (225)
+.++|+|+--+ ++||.|++....|++ .++.+..+.++
T Consensus 111 ~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~-------~~i~y~~~DI~ 151 (204)
T PTZ00062 111 RNHKILLFMKGSKTFPFCRFSNAVVNMLNS-------SGVKYETYNIF 151 (204)
T ss_pred hcCCEEEEEccCCCCCCChhHHHHHHHHHH-------cCCCEEEEEcC
Confidence 45566664443 578888865555543 23555555554
No 244
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=68.03 E-value=7.6 Score=28.43 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=22.9
Q ss_pred ccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHh
Q 027311 187 SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLEC 222 (225)
Q Consensus 187 ~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ 222 (225)
+|.++|+++| +|+.+ .+..+.+++.+.|++
T Consensus 133 ~i~~tPt~~i---nG~~~---~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 133 GITGTPTFFI---NGKYV---VGPYTIEELKELIDK 162 (162)
T ss_dssp T-SSSSEEEE---TTCEE---ETTTSHHHHHHHHHH
T ss_pred CCccccEEEE---CCEEe---CCCCCHHHHHHHHcC
Confidence 8999999777 78874 556778888888874
No 245
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=66.30 E-value=17 Score=26.25 Aligned_cols=51 Identities=20% Similarity=0.196 Sum_probs=31.8
Q ss_pred EEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcc
Q 027311 95 VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFP 157 (225)
Q Consensus 95 ~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (225)
.|..++|+.|++...-|++ .|+.+-.+.+. ..+-+.+++.+++ +..+..+.
T Consensus 4 iY~~~~C~~crkA~~~L~~-------~~i~~~~~d~~----~~~~s~~eL~~~l-~~~~~~~~ 54 (132)
T PRK13344 4 IYTISSCTSCKKAKTWLNA-------HQLSYKEQNLG----KEPLTKEEILAIL-TKTENGIE 54 (132)
T ss_pred EEeCCCCHHHHHHHHHHHH-------cCCCeEEEECC----CCCCCHHHHHHHH-HHhCCCHH
Confidence 4557899999976544433 34555555543 2344888999998 55454443
No 246
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=65.85 E-value=16 Score=28.60 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=28.2
Q ss_pred EEE-EcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCC
Q 027311 93 LIV-NVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGA 135 (225)
Q Consensus 93 lv~-F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~ 135 (225)
||. |.+-.|..|...-..|.++.++ .++..++.++|.++.
T Consensus 1 vVELFTSQGCsSCPpAD~~L~~l~~~---~~Vi~LafHVDYWDy 41 (202)
T PF06764_consen 1 VVELFTSQGCSSCPPADRLLSELAAR---PDVIALAFHVDYWDY 41 (202)
T ss_dssp EEEEEE-TT-TT-HHHHHHHHHHHHH---TSSEEEEEE-STT-S
T ss_pred CeeEecCCCCCCCcHHHHHHHHhhcC---CCEEEEEecCCcccC
Confidence 344 4466999999999999999988 369999999986543
No 247
>PRK10026 arsenate reductase; Provisional
Probab=63.55 E-value=56 Score=23.95 Aligned_cols=48 Identities=8% Similarity=0.221 Sum_probs=30.8
Q ss_pred EEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCC
Q 027311 95 VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKA 154 (225)
Q Consensus 95 ~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~ 154 (225)
.|+.+.|..|++.+.-|++.. -.++++-+-- ++-+.+++.+++ +..+.
T Consensus 6 iY~~p~Cst~RKA~~wL~~~g-----i~~~~~d~~~------~ppt~~eL~~~l-~~~g~ 53 (141)
T PRK10026 6 IYHNPACGTSRNTLEMIRNSG-----TEPTIIHYLE------TPPTRDELVKLI-ADMGI 53 (141)
T ss_pred EEeCCCCHHHHHHHHHHHHCC-----CCcEEEeeeC------CCcCHHHHHHHH-HhCCC
Confidence 456889999998877666542 1244444432 334889999998 55453
No 248
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=62.84 E-value=1.2e+02 Score=28.25 Aligned_cols=54 Identities=13% Similarity=0.088 Sum_probs=37.1
Q ss_pred cccCCCceecCeEEeCC-CCCeecCCc-c--CCCEEEEEEcccC-CCCChHhHHHHHHH
Q 027311 61 MASQSKTSVHDFSVKDA-KGQDVDLSI-Y--KGKLLLIVNVASQ-CGLTNSNYTELSQL 114 (225)
Q Consensus 61 ~~~~~g~~~p~f~l~~~-~G~~~~l~~-~--~gk~vlv~F~~tw-C~~C~~~~~~l~~l 114 (225)
....+|..+|++.+... +|+.+.|.+ + .|++.|+.|-... .+.....+..+.+.
T Consensus 461 ~~~~~G~r~~~~~v~~~~d~~~~~l~~~~~~~g~~~l~~f~~~~~~~~~~~~l~~~~~~ 519 (634)
T PRK08294 461 TGFPIGKRFHSAPVIRLADAKPVHLGHAATADGRWRIYAFADAADPAGPGSALDALCEF 519 (634)
T ss_pred cCCCCceeCCCCceeeccCCCchhHhhhcccCCCEEEEEEcCCCCcchhHHHHHHHHHH
Confidence 45789999999999875 777777665 2 6899999886542 23454444444443
No 249
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=61.29 E-value=35 Score=23.74 Aligned_cols=27 Identities=4% Similarity=0.017 Sum_probs=19.2
Q ss_pred ccccceeEEEECCCCcEEEEcCCCCChh
Q 027311 187 SIKWNFSKFLVDKEGNVVERYAPTTSPL 214 (225)
Q Consensus 187 ~v~~~P~~~lid~~G~I~~~~~g~~~~~ 214 (225)
++...|+.++. ++|+.+....|..+.+
T Consensus 79 gv~~~PaLvf~-R~g~~lG~i~gi~dW~ 105 (107)
T PF07449_consen 79 GVRRWPALVFF-RDGRYLGAIEGIRDWA 105 (107)
T ss_dssp T-TSSSEEEEE-ETTEEEEEEESSSTHH
T ss_pred CCccCCeEEEE-ECCEEEEEecCeeccc
Confidence 66677887887 7788888877755543
No 250
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=58.10 E-value=14 Score=27.84 Aligned_cols=39 Identities=18% Similarity=0.235 Sum_probs=30.0
Q ss_pred EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d 131 (225)
|..|+..-||.|-...+.+.++.+++.+-.++...+++.
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 566778899999999999999999994433555555544
No 251
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=56.42 E-value=42 Score=27.20 Aligned_cols=95 Identities=22% Similarity=0.320 Sum_probs=54.6
Q ss_pred EEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecC-CCCCc
Q 027311 91 LLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDV-NGDNA 169 (225)
Q Consensus 91 ~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~ 169 (225)
.+++ +.+..|+= ...++.+..+|.++|+++|-|+-++.. +..++.+.+ ......|-++ +|. .-...
T Consensus 54 nvLL-~G~rGtGK----SSlVkall~~y~~~GLRlIev~k~~L~-----~l~~l~~~l-~~~~~kFIlf--~DDLsFe~~ 120 (249)
T PF05673_consen 54 NVLL-WGARGTGK----SSLVKALLNEYADQGLRLIEVSKEDLG-----DLPELLDLL-RDRPYKFILF--CDDLSFEEG 120 (249)
T ss_pred ceEE-ecCCCCCH----HHHHHHHHHHHhhcCceEEEECHHHhc-----cHHHHHHHH-hcCCCCEEEE--ecCCCCCCC
Confidence 4555 33445552 335667888899999999999865321 555666666 4445566665 442 22333
Q ss_pred hhhhhhccccCCCCCCCccccceeEEEECCCCc
Q 027311 170 APLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGN 202 (225)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~ 202 (225)
..-|+.++.... | ++...|..++|-..-+
T Consensus 121 d~~yk~LKs~Le---G-gle~~P~NvliyATSN 149 (249)
T PF05673_consen 121 DTEYKALKSVLE---G-GLEARPDNVLIYATSN 149 (249)
T ss_pred cHHHHHHHHHhc---C-ccccCCCcEEEEEecc
Confidence 344655554321 1 6666787777644333
No 252
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=55.62 E-value=15 Score=27.81 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=23.3
Q ss_pred EEEEcccCCCCChHhHHHHHHHHHHHh
Q 027311 93 LIVNVASQCGLTNSNYTELSQLYDKYK 119 (225)
Q Consensus 93 lv~F~~twC~~C~~~~~~l~~l~~~~~ 119 (225)
|..|+-..||.|-...+.|.++.++++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 445667899999999999999999984
No 253
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=53.08 E-value=18 Score=27.27 Aligned_cols=30 Identities=13% Similarity=0.062 Sum_probs=22.1
Q ss_pred ccccceeEEEECCCCcEEEEcCCCCChhhHHHHHH
Q 027311 187 SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLE 221 (225)
Q Consensus 187 ~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~ 221 (225)
++.++|+++| +|+ +...|....+.+++.|+
T Consensus 164 gv~GvP~~vv---~g~--~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 164 GVFGVPTFVV---NGK--YRFFGADRLDELEDALQ 193 (193)
T ss_dssp TCSSSSEEEE---TTT--EEEESCSSHHHHHHHH-
T ss_pred CCcccCEEEE---CCE--EEEECCCCHHHHHHHhC
Confidence 8899999776 566 56677777778877764
No 254
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=52.22 E-value=31 Score=20.17 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=19.0
Q ss_pred EEECCCCcEEEEcCCCCCh--hhHHHHHHhh
Q 027311 195 FLVDKEGNVVERYAPTTSP--LSIEVVLECL 223 (225)
Q Consensus 195 ~lid~~G~I~~~~~g~~~~--~~l~~~l~~l 223 (225)
|.|++||+|...-.|..-. .++.+.|++.
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~ 33 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEA 33 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHH
Confidence 7899999999887664422 2444444444
No 255
>PF07411 DUF1508: Domain of unknown function (DUF1508); InterPro: IPR010879 This domain is found in a family of proteins, which have no known function. Members of this family are often found as tandem repeats and in some cases represent the whole protein.; PDB: 3BID_H 2K49_A 2K8E_A 2K7I_A.
Probab=50.30 E-value=37 Score=19.85 Aligned_cols=32 Identities=22% Similarity=0.200 Sum_probs=22.2
Q ss_pred eeEEEECCCCcEEEEcCCCCChhhHHHHHHhh
Q 027311 192 FSKFLVDKEGNVVERYAPTTSPLSIEVVLECL 223 (225)
Q Consensus 192 P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~l 223 (225)
+...|.+.+|+|+....+..+...-+..|+.+
T Consensus 6 ~~f~L~a~ng~viasse~Y~sk~~a~~~I~~V 37 (49)
T PF07411_consen 6 FRFRLKAGNGEVIASSEGYSSKADAEKGIESV 37 (49)
T ss_dssp EEEEEE-TTS-EEEEBEEBSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCEEEecCCcCCHHHHHHHHHHH
Confidence 35579999999999877777777666666554
No 256
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=49.78 E-value=94 Score=22.23 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=25.1
Q ss_pred ccCCC--CCh----HhHHHHHHHHHHHhcCCeEEEEEecCC
Q 027311 98 ASQCG--LTN----SNYTELSQLYDKYKNQGLEILAFPCNQ 132 (225)
Q Consensus 98 ~twC~--~C~----~~~~~l~~l~~~~~~~~~~iv~Is~d~ 132 (225)
|-.|. .|- .++-.+....+.++++|+.|...++..
T Consensus 10 amCC~tGvCG~~vd~eL~~~a~~~~~Lk~~gv~v~RyNL~~ 50 (123)
T PF06953_consen 10 AMCCSTGVCGPSVDPELVRFAADLDWLKEQGVEVERYNLAQ 50 (123)
T ss_dssp S-SSTTS-SSSS--HHHHHHHHHHHHHHHTT-EEEEEETTT
T ss_pred ccccccCccCCCCCHHHHHHHHHHHHHHhCCceEEEEcccc
Confidence 44555 453 577888888889999999999999863
No 257
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=46.54 E-value=57 Score=26.59 Aligned_cols=81 Identities=19% Similarity=0.305 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecC-CCCCchhhhhhccccCCCCCCCc
Q 027311 109 TELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDV-NGDNAAPLYKHLKSSKGGLFGDS 187 (225)
Q Consensus 109 ~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~~~ 187 (225)
.-.+.+..+|.++|.++|-|+-++.. +...+-+.+ +.....|.++ +|. .-+.....|+.++.... | +
T Consensus 100 SLVKA~~~e~~~~glrLVEV~k~dl~-----~Lp~l~~~L-r~~~~kFIlF--cDDLSFe~gd~~yK~LKs~Le---G-~ 167 (287)
T COG2607 100 SLVKALLNEYADEGLRLVEVDKEDLA-----TLPDLVELL-RARPEKFILF--CDDLSFEEGDDAYKALKSALE---G-G 167 (287)
T ss_pred HHHHHHHHHHHhcCCeEEEEcHHHHh-----hHHHHHHHH-hcCCceEEEE--ecCCCCCCCchHHHHHHHHhc---C-C
Confidence 35667888888899999999754211 333444444 3445556655 442 22233344666665432 2 7
Q ss_pred cccceeEEEECCCC
Q 027311 188 IKWNFSKFLVDKEG 201 (225)
Q Consensus 188 v~~~P~~~lid~~G 201 (225)
+...|..+|+=..-
T Consensus 168 ve~rP~NVl~YATS 181 (287)
T COG2607 168 VEGRPANVLFYATS 181 (287)
T ss_pred cccCCCeEEEEEec
Confidence 77788888764433
No 258
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=45.86 E-value=1e+02 Score=21.43 Aligned_cols=66 Identities=20% Similarity=0.254 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCc
Q 027311 108 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDS 187 (225)
Q Consensus 108 ~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 187 (225)
..-|++-.+++++.+-.=+.|+++ +.+.+.+.- +-....+.. ...+++..+.+ +
T Consensus 37 ~~WL~~~~~~L~~l~AvGlVVnV~--------t~~~l~~Lr--~lapgl~l~---P~sgddLa~rL-------------~ 90 (105)
T TIGR03765 37 RQWLQQNAAALKSLGAVGLVVNVE--------TAAALQRLR--ALAPGLPLL---PVSGDDLAERL-------------G 90 (105)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecC--------CHHHHHHHH--HHcCCCccc---CCCHHHHHHHh-------------C
Confidence 345677777777776666667776 566665542 212233332 34455544444 8
Q ss_pred cccceeEEEECCCC
Q 027311 188 IKWNFSKFLVDKEG 201 (225)
Q Consensus 188 v~~~P~~~lid~~G 201 (225)
++++|. +|..+|
T Consensus 91 l~hYPv--Lit~tg 102 (105)
T TIGR03765 91 LRHYPV--LITATG 102 (105)
T ss_pred CCcccE--EEecCc
Confidence 888885 676766
No 259
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=45.73 E-value=32 Score=27.39 Aligned_cols=33 Identities=15% Similarity=0.055 Sum_probs=26.1
Q ss_pred ccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311 187 SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC 224 (225)
Q Consensus 187 ~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll 224 (225)
+|+++|+.++ +|++ ...|..+++.++..|++++
T Consensus 181 gI~gVP~fv~---d~~~--~V~Gaq~~~v~~~al~~~~ 213 (225)
T COG2761 181 GIRGVPTFVF---DGKY--AVSGAQPYDVLEDALRQLL 213 (225)
T ss_pred CCccCceEEE---cCcE--eecCCCCHHHHHHHHHHHH
Confidence 8999999666 5554 4567778899999998876
No 260
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=45.21 E-value=32 Score=26.95 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=35.6
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEe
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFP 129 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is 129 (225)
+|-||||..+...-|.|......|+++.-+|++ +.+|-|.
T Consensus 110 ~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~--iKFVki~ 149 (240)
T KOG3170|consen 110 EGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ--IKFVKIP 149 (240)
T ss_pred CccEEEEEeeccccHHHHHHHHHHHHHhhcCCc--ceEEecc
Confidence 477999999999999999999999999999986 7777765
No 261
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=43.24 E-value=83 Score=25.09 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=28.7
Q ss_pred CEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcC-CeEEEE
Q 027311 90 KLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQ-GLEILA 127 (225)
Q Consensus 90 k~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~-~~~iv~ 127 (225)
+.+-|++| -.-||.|-..-+.|.+...+++.. .+++.-
T Consensus 4 ~~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~~v~i~w 43 (225)
T COG2761 4 MKIEIDVFSDVVCPWCYIGKRRLEKALAEYPQEVRVEIRW 43 (225)
T ss_pred ceEEEEEEeCCcCchhhcCHHHHHHHHHhcCcceeEEEEe
Confidence 45666666 449999999999999999999844 344444
No 262
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=43.16 E-value=1e+02 Score=22.69 Aligned_cols=66 Identities=20% Similarity=0.272 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCc
Q 027311 108 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDS 187 (225)
Q Consensus 108 ~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 187 (225)
..-|++..+++++.+-.=+.|+++ +.+.+++.. +.....++. ...+++..+.+ +
T Consensus 75 ~~WL~~~~~~L~~l~AvGlVVNV~--------t~~~L~~Lr--~lapgl~l~---P~sgddLA~rL-------------~ 128 (142)
T PF11072_consen 75 RQWLQQNAEELKQLGAVGLVVNVA--------TEAALQRLR--QLAPGLPLL---PVSGDDLARRL-------------G 128 (142)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecC--------CHHHHHHHH--HHcCCCeec---CCCHHHHHHHh-------------C
Confidence 456677777777776666668876 666666553 222233332 34455555444 8
Q ss_pred cccceeEEEECCCC
Q 027311 188 IKWNFSKFLVDKEG 201 (225)
Q Consensus 188 v~~~P~~~lid~~G 201 (225)
++++|. +|...|
T Consensus 129 l~HYPv--LIt~~g 140 (142)
T PF11072_consen 129 LSHYPV--LITATG 140 (142)
T ss_pred CCcccE--EeecCC
Confidence 888885 666665
No 263
>cd07202 cPLA2_Grp-IVC Group IVC cytoplasmic phospholipase A2; catalytic domain; Ca-independent. Group IVC cPLA2, a small 61 kDa protein, is a single domain alpha/beta hydrolase. It lacks a C2 domain; therefore, it has no Ca-dependence. Group IVC cPLA2 is also referred to as cPLA2-gamma. The cPLA2-gamma enzyme is predominantly found in cardiac and skeletal muscles, and to a lesser extent in the brain. Human cPLA2-gamma is approximately 30% identical to cPLA2-alpha. The catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms. Movement of the cPLA2 lid possibly exposes a greater hydrophobic surface and the active site. cPLA2 be
Probab=42.40 E-value=38 Score=29.66 Aligned_cols=39 Identities=10% Similarity=0.238 Sum_probs=26.4
Q ss_pred cCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceee
Q 027311 120 NQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFD 160 (225)
Q Consensus 120 ~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (225)
.++|.+| |+.|...+..=.+.....+|+ ++++++||-+.
T Consensus 304 ~R~VDlI-isfD~Sa~~pf~~l~~~~~~c-~~~~ipfp~i~ 342 (430)
T cd07202 304 VRNTDLI-LSFDFSEGDPFETIKDTAEYC-RKHNIPFPQVD 342 (430)
T ss_pred CCcccEE-EEeecCCCchhHHHHHHHHHH-HHcCCCCCCcC
Confidence 5568777 777754433333445667777 88899999875
No 264
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=41.88 E-value=2.1e+02 Score=24.36 Aligned_cols=98 Identities=23% Similarity=0.401 Sum_probs=58.9
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (225)
.+||.|+-|.+-. +.-+ .-.+.++...|++.|..|+-...|.|- ..-.++++.|. ++- ..+++.. ...++
T Consensus 136 ~~~p~Vil~vGVN-G~GK--TTTIaKLA~~l~~~g~~VllaA~DTFR---AaAiEQL~~w~-er~--gv~vI~~-~~G~D 205 (340)
T COG0552 136 EKKPFVILFVGVN-GVGK--TTTIAKLAKYLKQQGKSVLLAAGDTFR---AAAIEQLEVWG-ERL--GVPVISG-KEGAD 205 (340)
T ss_pred CCCcEEEEEEecC-CCch--HhHHHHHHHHHHHCCCeEEEEecchHH---HHHHHHHHHHH-HHh--CCeEEcc-CCCCC
Confidence 4667777777654 2333 346677777778888899988888642 22456777777 553 4455532 22334
Q ss_pred CchhhhhhccccCCCCCCCccccceeEEEECCCCcE
Q 027311 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNV 203 (225)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I 203 (225)
.+...|+........ ++ -.+|||--|+.
T Consensus 206 pAaVafDAi~~Akar----~~----DvvliDTAGRL 233 (340)
T COG0552 206 PAAVAFDAIQAAKAR----GI----DVVLIDTAGRL 233 (340)
T ss_pred cHHHHHHHHHHHHHc----CC----CEEEEeCcccc
Confidence 444667655443211 11 23899999986
No 265
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=41.72 E-value=29 Score=26.31 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=24.4
Q ss_pred EEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEE
Q 027311 95 VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAF 128 (225)
Q Consensus 95 ~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~I 128 (225)
.|..+.|+.|-..-|.+.++..+|+.+ +.+--|
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~-i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK-IEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT-EEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc-EEEEEE
Confidence 477899999999999999999999876 543333
No 266
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=41.44 E-value=42 Score=21.13 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=24.5
Q ss_pred CCCCeecCCccCCCEEEEEEcccCCCCChHhHHHH
Q 027311 77 AKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTEL 111 (225)
Q Consensus 77 ~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l 111 (225)
.+|..+.+-++++..+.|.|-+ .|..|.....++
T Consensus 14 ~dGGdv~lv~v~~~~V~V~l~G-aC~gC~~s~~Tl 47 (68)
T PF01106_consen 14 SDGGDVELVDVDDGVVYVRLTG-ACSGCPSSDMTL 47 (68)
T ss_dssp HTTEEEEEEEEETTEEEEEEES-SCCSSCCHHHHH
T ss_pred hcCCcEEEEEecCCEEEEEEEe-CCCCCCCHHHHH
Confidence 3788888888888888887754 566776555555
No 267
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=41.26 E-value=67 Score=22.36 Aligned_cols=48 Identities=10% Similarity=0.252 Sum_probs=31.1
Q ss_pred EEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCC
Q 027311 95 VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKA 154 (225)
Q Consensus 95 ~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~ 154 (225)
.|..+.|..|++....|++. |+.+..+.+- .++-+.+++.+++ +..+.
T Consensus 3 iy~~~~C~t~rkA~~~L~~~-------~i~~~~~di~----~~p~t~~el~~~l-~~~g~ 50 (114)
T TIGR00014 3 IYHNPRCSKSRNTLALLEDK-------GIEPEVVKYL----KNPPTKSELEAIF-AKLGL 50 (114)
T ss_pred EEECCCCHHHHHHHHHHHHC-------CCCeEEEecc----CCCcCHHHHHHHH-HHcCC
Confidence 35578999999877666653 3444444432 3445889999998 55554
No 268
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=41.07 E-value=84 Score=21.82 Aligned_cols=73 Identities=14% Similarity=0.224 Sum_probs=44.0
Q ss_pred CCCeecCCccCC-CEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCC---CCCCHHHHHHHHHhhcC
Q 027311 78 KGQDVDLSIYKG-KLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQ---EPGDNEQIQEFACTRFK 153 (225)
Q Consensus 78 ~G~~~~l~~~~g-k~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~---~~~~~~~~~~~~~~~~~ 153 (225)
..+.-.+++|.+ .+-+|-|+ .|+.|. -..+....+++.+.++.+|-+++=..... .=...+++.+.++++++
T Consensus 24 ~~r~g~F~~y~~~~~elvgf~--~CgGCp--g~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~g 99 (107)
T PF08821_consen 24 NERKGAFARYDDEDVELVGFF--TCGGCP--GRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKFG 99 (107)
T ss_pred HhccCccccCCCCCeEEEEEe--eCCCCC--hhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHhC
Confidence 334456778765 57788774 455555 56666677777777888888774211100 11246778877755544
Q ss_pred C
Q 027311 154 A 154 (225)
Q Consensus 154 ~ 154 (225)
+
T Consensus 100 i 100 (107)
T PF08821_consen 100 I 100 (107)
T ss_pred C
Confidence 3
No 269
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=39.47 E-value=38 Score=28.68 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=31.3
Q ss_pred ccccceeEEEECC-CCcEEEEcCCCCChhhHHHHHHhhh
Q 027311 187 SIKWNFSKFLVDK-EGNVVERYAPTTSPLSIEVVLECLC 224 (225)
Q Consensus 187 ~v~~~P~~~lid~-~G~I~~~~~g~~~~~~l~~~l~~ll 224 (225)
.+...|.+.+||| .|.-+.++.|..+++++.+.+...+
T Consensus 151 ~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi 189 (356)
T KOG1364|consen 151 HISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFI 189 (356)
T ss_pred eccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHH
Confidence 7888999999997 4787888888888888888877654
No 270
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=38.19 E-value=26 Score=21.88 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.5
Q ss_pred CCCceecCeEEeCCCCCeecCCc
Q 027311 64 QSKTSVHDFSVKDAKGQDVDLSI 86 (225)
Q Consensus 64 ~~g~~~p~f~l~~~~G~~~~l~~ 86 (225)
.+|+++-+++++|..|..++++.
T Consensus 31 NvgQP~ENWElkDe~G~vlD~~k 53 (76)
T PF10790_consen 31 NVGQPPENWELKDESGQVLDVNK 53 (76)
T ss_pred ccCCCcccceeeccCCcEeeccc
Confidence 58899999999999999888765
No 271
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=38.07 E-value=1.1e+02 Score=25.78 Aligned_cols=95 Identities=18% Similarity=0.256 Sum_probs=52.6
Q ss_pred cCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeee
Q 027311 83 DLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKV 162 (225)
Q Consensus 83 ~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (225)
++.+-.|+|.+|. .+ ..+.-+ +...|+..+|+.++-|+-+. +-.+++++-+.++++..-..+. .
T Consensus 43 ~~~~~~g~WAVVT-Ga-TDGIGK-------ayA~eLAkrG~nvvLIsRt~------~KL~~v~kEI~~~~~vev~~i~-~ 106 (312)
T KOG1014|consen 43 DLKEKLGSWAVVT-GA-TDGIGK-------AYARELAKRGFNVVLISRTQ------EKLEAVAKEIEEKYKVEVRIIA-I 106 (312)
T ss_pred chHHhcCCEEEEE-CC-CCcchH-------HHHHHHHHcCCEEEEEeCCH------HHHHHHHHHHHHHhCcEEEEEE-E
Confidence 4444456787773 22 223444 34455566889988888542 1344555556567775444332 4
Q ss_pred cCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcE
Q 027311 163 DVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNV 203 (225)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I 203 (225)
|...... .|+.+.+ .+..+|-.+||+-=|.-
T Consensus 107 Dft~~~~--~ye~i~~--------~l~~~~VgILVNNvG~~ 137 (312)
T KOG1014|consen 107 DFTKGDE--VYEKLLE--------KLAGLDVGILVNNVGMS 137 (312)
T ss_pred ecCCCch--hHHHHHH--------HhcCCceEEEEeccccc
Confidence 5544432 4554443 34445677888776653
No 272
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=37.88 E-value=81 Score=23.18 Aligned_cols=46 Identities=15% Similarity=0.291 Sum_probs=27.1
Q ss_pred ccCCCEEEE-EEcccCCCCChHhHHHHHHHHHHHhcCCeE-EEEEecC
Q 027311 86 IYKGKLLLI-VNVASQCGLTNSNYTELSQLYDKYKNQGLE-ILAFPCN 131 (225)
Q Consensus 86 ~~~gk~vlv-~F~~twC~~C~~~~~~l~~l~~~~~~~~~~-iv~Is~d 131 (225)
.|||+++++ -|...--..-......|+++..+++..|++ |+.|+.|
T Consensus 47 qfKGRv~l~P~~~Y~~~~~~~~~~~~L~~w~~~l~~~GFkhV~~lT~D 94 (142)
T PF10673_consen 47 QFKGRVLLFPAFTYLKEEDEEELVERLNDWCEELKESGFKHVFYLTSD 94 (142)
T ss_pred hcCceEEecCCeeeecccchhHHHHHHHHHHHHHHhcCCcEEEEEecC
Confidence 378987776 122111112222234688888899988885 5666655
No 273
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=37.60 E-value=44 Score=21.78 Aligned_cols=33 Identities=27% Similarity=0.215 Sum_probs=20.4
Q ss_pred ceeEEEECCCCcEEEE-cCCCCChhhHHHHHHhh
Q 027311 191 NFSKFLVDKEGNVVER-YAPTTSPLSIEVVLECL 223 (225)
Q Consensus 191 ~P~~~lid~~G~I~~~-~~g~~~~~~l~~~l~~l 223 (225)
.|..++.|.+|+++.+ .....+.+++.+.|..-
T Consensus 42 ~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~k 75 (78)
T PF08806_consen 42 PPELVLLDEDGEEVERINIEKWKTDEIEEFLNEK 75 (78)
T ss_dssp --EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHH
T ss_pred CCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHh
Confidence 4899999999997665 33455777888887653
No 274
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=37.52 E-value=1.7e+02 Score=25.81 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=20.5
Q ss_pred CeEEEEEecCCCC-----CCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311 122 GLEILAFPCNQFG-----AQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (225)
Q Consensus 122 ~~~iv~Is~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (225)
|+.++.++.+..+ .+.+.+.+.+.+.+ .+.+.++-+. .|.+++
T Consensus 199 G~~v~~i~~~~dg~~~~~~~~~~~~e~l~~~v-~~~~adlGia--~DgDgD 246 (446)
T PRK14324 199 GADVIVINDEPNGFNINENCGALHPENLAQEV-KRYRADIGFA--FDGDAD 246 (446)
T ss_pred CCeEEEECCCCCCCCCCCCCCCCCHHHHHHHH-HhCCCCEEEE--ECCCCc
Confidence 4566666544211 11233556666665 4545554444 344443
No 275
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=36.59 E-value=1.7e+02 Score=22.09 Aligned_cols=24 Identities=8% Similarity=0.015 Sum_probs=21.1
Q ss_pred EcccCCCCChHhHHHHHHHHHHHh
Q 027311 96 NVASQCGLTNSNYTELSQLYDKYK 119 (225)
Q Consensus 96 F~~twC~~C~~~~~~l~~l~~~~~ 119 (225)
|+-.-||.|-...+.|.++.++++
T Consensus 4 ~~D~~cP~cyl~~~~l~~~~~~~~ 27 (201)
T cd03024 4 WSDVVCPWCYIGKRRLEKALAELG 27 (201)
T ss_pred EecCcCccHHHHHHHHHHHHHhCC
Confidence 446689999999999999999995
No 276
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=36.17 E-value=33 Score=21.20 Aligned_cols=30 Identities=10% Similarity=0.031 Sum_probs=17.8
Q ss_pred EcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEec
Q 027311 96 NVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC 130 (225)
Q Consensus 96 F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~ 130 (225)
|...|||.|.+..-.+.+. +..++++-++.
T Consensus 4 y~~~~~p~~~rv~~~L~~~-----gl~~e~~~v~~ 33 (71)
T cd03060 4 YSFRRCPYAMRARMALLLA-----GITVELREVEL 33 (71)
T ss_pred EecCCCcHHHHHHHHHHHc-----CCCcEEEEeCC
Confidence 5578999998665554433 22355555543
No 277
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=35.75 E-value=2.5e+02 Score=24.69 Aligned_cols=20 Identities=30% Similarity=0.235 Sum_probs=10.1
Q ss_pred CCHHHHHHHHHhhcCCCccee
Q 027311 139 GDNEQIQEFACTRFKAEFPIF 159 (225)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~ 159 (225)
.+.+++.+.+ ++.+.++-+.
T Consensus 217 ~~l~~l~~~v-~~~~adlGia 236 (443)
T PRK10887 217 TDPEALQAAV-LAEKADLGIA 236 (443)
T ss_pred CCHHHHHHHH-HhcCCCeeeE
Confidence 3455666665 4444444444
No 278
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=35.66 E-value=85 Score=26.62 Aligned_cols=44 Identities=11% Similarity=0.099 Sum_probs=35.2
Q ss_pred CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d 131 (225)
.||||++-|-...=|-+...+..+++...+.+-.++.++++...
T Consensus 157 dGKPv~~Iy~p~~~pd~~~~~~~wr~~a~~~G~~giyii~~~~~ 200 (345)
T PF14307_consen 157 DGKPVFLIYRPGDIPDIKEMIERWREEAKEAGLPGIYIIAVQGS 200 (345)
T ss_pred CCEEEEEEECcccccCHHHHHHHHHHHHHHcCCCceEEEEEecC
Confidence 59999998877655677788888888888887777889988753
No 279
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=34.65 E-value=77 Score=22.87 Aligned_cols=38 Identities=21% Similarity=0.457 Sum_probs=27.8
Q ss_pred HHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCccee
Q 027311 113 QLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIF 159 (225)
Q Consensus 113 ~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (225)
++.++++++ +++++++... +.+.+.+.+ ++|+..+-.+
T Consensus 16 dVi~~~~d~-f~v~~Lsa~~-------n~~~L~~q~-~~f~p~~v~i 53 (129)
T PF02670_consen 16 DVIRKHPDK-FEVVALSAGS-------NIEKLAEQA-REFKPKYVVI 53 (129)
T ss_dssp HHHHHCTTT-EEEEEEEESS-------THHHHHHHH-HHHT-SEEEE
T ss_pred HHHHhCCCc-eEEEEEEcCC-------CHHHHHHHH-HHhCCCEEEE
Confidence 455566665 9999999875 778888887 7778777666
No 280
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=34.56 E-value=1.1e+02 Score=21.43 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=29.2
Q ss_pred EEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcC
Q 027311 95 VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFK 153 (225)
Q Consensus 95 ~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~ 153 (225)
.|..+.|+.|++....|++.. -.++++-+.- ++-+.+++++++ ++.+
T Consensus 4 iy~~p~C~~crkA~~~L~~~g-----i~~~~~d~~~------~p~s~~eL~~~l-~~~g 50 (113)
T cd03033 4 FYEKPGCANNARQKALLEAAG-----HEVEVRDLLT------EPWTAETLRPFF-GDLP 50 (113)
T ss_pred EEECCCCHHHHHHHHHHHHcC-----CCcEEeehhc------CCCCHHHHHHHH-HHcC
Confidence 456789999997765554432 1244444432 344889999998 4444
No 281
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=34.08 E-value=24 Score=24.34 Aligned_cols=31 Identities=13% Similarity=0.164 Sum_probs=22.9
Q ss_pred EcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEe
Q 027311 96 NVASQCGLTNSNYTELSQLYDKYKNQGLEILAFP 129 (225)
Q Consensus 96 F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is 129 (225)
||-.+||.|..+...+.+.- ....++++.+.
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d---~~~~l~~~~~~ 32 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRD---RGGRLRFVDIQ 32 (114)
T ss_pred EECCCCHhHHHHHHHHHhcC---CCCCEEEEECC
Confidence 67789999999888887772 12348888774
No 282
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=34.03 E-value=2.7e+02 Score=24.52 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=10.4
Q ss_pred CCHHHHHHHHHhhcCCCccee
Q 027311 139 GDNEQIQEFACTRFKAEFPIF 159 (225)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~ 159 (225)
.+.+++.+.. .+.+.++-+.
T Consensus 219 ~~~~~l~~~v-~~~~adlGia 238 (448)
T PRK14316 219 THPEALQELV-VEKGADLGLA 238 (448)
T ss_pred CCHHHHHHHH-hhcCCCEEEE
Confidence 4556666666 4444444444
No 283
>PRK10853 putative reductase; Provisional
Probab=33.81 E-value=1e+02 Score=21.73 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=31.1
Q ss_pred EEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCC
Q 027311 95 VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKA 154 (225)
Q Consensus 95 ~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~ 154 (225)
.|..+.|..|++.+.-|++. |+.+-.+..- .++-+.+++.+++ ++.|.
T Consensus 4 iy~~~~C~t~rkA~~~L~~~-------~i~~~~~d~~----k~p~s~~eL~~~l-~~~g~ 51 (118)
T PRK10853 4 LYGIKNCDTIKKARRWLEAQ-------GIDYRFHDYR----VDGLDSELLQGFI-DELGW 51 (118)
T ss_pred EEcCCCCHHHHHHHHHHHHc-------CCCcEEeehc----cCCcCHHHHHHHH-HHcCH
Confidence 45578999999877766643 3444444432 2344889999998 55553
No 284
>PRK14323 glmM phosphoglucosamine mutase; Provisional
Probab=32.66 E-value=2.6e+02 Score=24.51 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=10.1
Q ss_pred CCHHHHHHHHHhhcCCCccee
Q 027311 139 GDNEQIQEFACTRFKAEFPIF 159 (225)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~ 159 (225)
.+.+++.+.. ++.+.++-+.
T Consensus 219 ~~l~~l~~~v-~~~~adlGia 238 (440)
T PRK14323 219 THPEALQRFV-VEGGLDLGVA 238 (440)
T ss_pred CCHHHHHHHH-hccCCCEEEE
Confidence 3555666655 4444444443
No 285
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=32.58 E-value=2.8e+02 Score=24.22 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=17.1
Q ss_pred CeEEEEEecCCCC-----CCCCCCHHHHHHHHHhhcCCCccee
Q 027311 122 GLEILAFPCNQFG-----AQEPGDNEQIQEFACTRFKAEFPIF 159 (225)
Q Consensus 122 ~~~iv~Is~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (225)
|++++.++....+ .+.+++.+++.+.. ++.+.++-+.
T Consensus 193 g~~v~~in~~~dg~~~~~~~~~~~~~~l~~~v-~~~~adlGia 234 (434)
T cd05802 193 GAEVIVINNAPDGLNINVNCGSTHPESLQKAV-LENGADLGIA 234 (434)
T ss_pred CCeEEEecCCCCCCCCCCCCCccCHHHHHHHH-HhcCCCEEEE
Confidence 4666666643211 11123555666655 4444444443
No 286
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=32.51 E-value=2.8e+02 Score=22.77 Aligned_cols=59 Identities=19% Similarity=0.248 Sum_probs=31.3
Q ss_pred ceecCeEEeCCCCCeecCCccC--CCEEEEEEcccCCCCChHhHH-HHHHHHHHHh--cCCeEEEEEecC
Q 027311 67 TSVHDFSVKDAKGQDVDLSIYK--GKLLLIVNVASQCGLTNSNYT-ELSQLYDKYK--NQGLEILAFPCN 131 (225)
Q Consensus 67 ~~~p~f~l~~~~G~~~~l~~~~--gk~vlv~F~~twC~~C~~~~~-~l~~l~~~~~--~~~~~iv~Is~d 131 (225)
+.+|-|.++|.+|..+-.+.-. ++.+...|+ |+.+.. .++++..+.+ ..+++|..|+++
T Consensus 73 ~~VPVF~itn~~G~p~l~~~~~~~~~~v~~~F~------s~~dA~~~L~~lk~~~p~~~~~~kV~pvsL~ 136 (274)
T PF04278_consen 73 AGVPVFTITNSQGEPVLVSGPDQGGKSVGLFFF------SQQDAEAFLAQLKKSNPELASGAKVVPVSLG 136 (274)
T ss_dssp TTSEEEEEE-TT--B-----TTS--SEEEEEES-------HHHHHHHHHHHHH-SSHHHTT-EEEEEEHH
T ss_pred cCceEEEEECCCCCEEEeccCCCCCceEEEEEe------cHHHHHHHHHHHhhhCccccCceEEEEecHH
Confidence 4689999999999998777754 566666564 444433 3445555433 346999999875
No 287
>PLN02640 glucose-6-phosphate 1-dehydrogenase
Probab=32.32 E-value=2.4e+02 Score=25.98 Aligned_cols=69 Identities=14% Similarity=0.170 Sum_probs=44.8
Q ss_pred CCCceecCeEEeCCCCCeecCCccCC--CEEEEEEcccCCCCChHhHHHHHHHHHHHh-cCCeEEEEEecCC
Q 027311 64 QSKTSVHDFSVKDAKGQDVDLSIYKG--KLLLIVNVASQCGLTNSNYTELSQLYDKYK-NQGLEILAFPCNQ 132 (225)
Q Consensus 64 ~~g~~~p~f~l~~~~G~~~~l~~~~g--k~vlv~F~~twC~~C~~~~~~l~~l~~~~~-~~~~~iv~Is~d~ 132 (225)
..|.++-..++.|-++.-..-...++ ...+|-|.||..=.-++.+|.|=+++..-. .+++.|+++.-.+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iVIFGATGDLA~RKL~PALy~L~~~g~Lp~~~~IIG~aR~~ 131 (573)
T PLN02640 60 SNGHPLNAVSLQDGENHLTEEHAEKGESTLSITVVGASGDLAKKKIFPALFALFYEDWLPENFTVFGYARTK 131 (573)
T ss_pred CCCCcccceecccccccccHhhccCCCCCeEEEEeCCccHhhhhhHHHHHHHHHHcCCCCCCCEEEEEECCC
Confidence 45555555555443332211122233 478888999988789999999999986532 3469999998653
No 288
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=31.90 E-value=8.2 Score=22.35 Aligned_cols=20 Identities=15% Similarity=0.380 Sum_probs=15.8
Q ss_pred CCCCChHhHHHHHHHHHHHh
Q 027311 100 QCGLTNSNYTELSQLYDKYK 119 (225)
Q Consensus 100 wC~~C~~~~~~l~~l~~~~~ 119 (225)
.|.||+.-++.|.++.++..
T Consensus 18 kC~PCR~Gt~~l~~~l~~i~ 37 (46)
T PF10589_consen 18 KCTPCREGTRQLAEILEKIV 37 (46)
T ss_dssp --HHHHCCCCHHHHHHHHHT
T ss_pred CCCCcHhHHHHHHHHHHHHH
Confidence 68899999999999888874
No 289
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=31.81 E-value=52 Score=21.33 Aligned_cols=31 Identities=13% Similarity=0.103 Sum_probs=19.8
Q ss_pred EEEECCCCcEEEEcCC-----CCChhhHHHHHHhhh
Q 027311 194 KFLVDKEGNVVERYAP-----TTSPLSIEVVLECLC 224 (225)
Q Consensus 194 ~~lid~~G~I~~~~~g-----~~~~~~l~~~l~~ll 224 (225)
.+.||++|.|..-+.| ..+.+++++.|++.+
T Consensus 32 ~~~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l 67 (82)
T PF02563_consen 32 EYTVDPDGTISLPLIGPVKVAGLTLEEAEEEIKQRL 67 (82)
T ss_dssp SEE--TTSEEEETTTEEEE-TT--HHHHHHHHHHHH
T ss_pred ceEECCCCcEeecccceEEECCCCHHHHHHHHHHHH
Confidence 4899999999866554 345677887777654
No 290
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=31.16 E-value=3.3e+02 Score=23.99 Aligned_cols=10 Identities=50% Similarity=0.963 Sum_probs=6.3
Q ss_pred EEECCCCcEE
Q 027311 195 FLVDKEGNVV 204 (225)
Q Consensus 195 ~lid~~G~I~ 204 (225)
.+||.+|+++
T Consensus 250 ~ivd~~G~~i 259 (448)
T PRK14315 250 IIVDEKGHVV 259 (448)
T ss_pred EEEcCCCcEe
Confidence 5667777654
No 291
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=30.73 E-value=1.7e+02 Score=20.48 Aligned_cols=14 Identities=14% Similarity=0.188 Sum_probs=6.6
Q ss_pred cCCCEEEEEEcccC
Q 027311 87 YKGKLLLIVNVASQ 100 (225)
Q Consensus 87 ~~gk~vlv~F~~tw 100 (225)
++||.+.+.--+.|
T Consensus 78 ~~gk~~~vfgt~g~ 91 (140)
T TIGR01753 78 LGGKKVALFGSGDW 91 (140)
T ss_pred CCCCEEEEEecCCC
Confidence 45665544433334
No 292
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=30.47 E-value=1.1e+02 Score=21.06 Aligned_cols=48 Identities=13% Similarity=0.278 Sum_probs=29.7
Q ss_pred EEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCC
Q 027311 95 VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKA 154 (225)
Q Consensus 95 ~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~ 154 (225)
.|..+.|..|++.+..|++. ++.+..+.+- .++-+.+++.+++ +..+.
T Consensus 3 iy~~~~C~t~rkA~~~L~~~-------~i~~~~~di~----~~~~t~~el~~~l-~~~~~ 50 (112)
T cd03034 3 IYHNPRCSKSRNALALLEEA-------GIEPEIVEYL----KTPPTAAELRELL-AKLGI 50 (112)
T ss_pred EEECCCCHHHHHHHHHHHHC-------CCCeEEEecc----cCCcCHHHHHHHH-HHcCC
Confidence 35578999999876555443 3333334332 2344888999988 55453
No 293
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=30.15 E-value=1.6e+02 Score=19.14 Aligned_cols=34 Identities=3% Similarity=0.184 Sum_probs=22.4
Q ss_pred CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEE
Q 027311 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEIL 126 (225)
Q Consensus 89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv 126 (225)
.++++|-|+.++|. .+...+.+..+.+++. +.+.
T Consensus 17 ~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~-~~F~ 50 (97)
T cd02981 17 DDVVVVGFFKDEES---EEYKTFEKVAESLRDD-YGFG 50 (97)
T ss_pred CCeEEEEEECCCCc---HHHHHHHHHHHhcccC-CeEE
Confidence 56777778877776 4566777777777653 4443
No 294
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=30.05 E-value=1.9e+02 Score=21.27 Aligned_cols=47 Identities=17% Similarity=0.365 Sum_probs=30.1
Q ss_pred EEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcc
Q 027311 92 LLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFP 157 (225)
Q Consensus 92 vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (225)
-++.|..+.|+=|..-+..| +.+|++|=.+..| +-..++ +++++++.
T Consensus 27 ~~~vyksPnCGCC~~w~~~m-------k~~Gf~Vk~~~~~--------d~~alK----~~~gIp~e 73 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHM-------KANGFEVKVVETD--------DFLALK----RRLGIPYE 73 (149)
T ss_pred eEEEEeCCCCccHHHHHHHH-------HhCCcEEEEeecC--------cHHHHH----HhcCCChh
Confidence 35557789999998555444 4567888777766 445555 34455544
No 295
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=29.98 E-value=55 Score=23.88 Aligned_cols=37 Identities=19% Similarity=0.351 Sum_probs=26.8
Q ss_pred EEEcccCCCCChH-------hHHHHHHHHHHHhcCCeEEEEEec
Q 027311 94 IVNVASQCGLTNS-------NYTELSQLYDKYKNQGLEILAFPC 130 (225)
Q Consensus 94 v~F~~twC~~C~~-------~~~~l~~l~~~~~~~~~~iv~Is~ 130 (225)
|.|-+|.|-.|.. .=..++++.++|+..++.++-=+.
T Consensus 33 vvfs~TeCFVctaagaMDLEnQ~rvk~~aEk~g~enlvVvlG~a 76 (150)
T PF04723_consen 33 VVFSSTECFVCTAAGAMDLENQQRVKDLAEKYGAENLVVVLGAA 76 (150)
T ss_pred EEEEeeeEEEecccccccHHHHHHHHHHHHhcCCccEEEEecCC
Confidence 4588899999975 234677888999988876664443
No 296
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=29.10 E-value=1.8e+02 Score=21.39 Aligned_cols=25 Identities=8% Similarity=-0.065 Sum_probs=14.9
Q ss_pred CCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311 100 QCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 100 wC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d 131 (225)
+||.|...-..|+++ ++.+--+.++
T Consensus 15 t~~~C~~ak~iL~~~-------~V~~~e~DVs 39 (147)
T cd03031 15 TFEDCNNVRAILESF-------RVKFDERDVS 39 (147)
T ss_pred cChhHHHHHHHHHHC-------CCcEEEEECC
Confidence 899998555555433 3445555554
No 297
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=28.42 E-value=2.4e+02 Score=22.64 Aligned_cols=25 Identities=16% Similarity=0.305 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhcCCeEEEEEecCC
Q 027311 108 YTELSQLYDKYKNQGLEILAFPCNQ 132 (225)
Q Consensus 108 ~~~l~~l~~~~~~~~~~iv~Is~d~ 132 (225)
...|.++..++.+.|+.|++|..|.
T Consensus 195 ~~~l~~iI~~l~~~g~~VvAivsD~ 219 (236)
T PF12017_consen 195 ADILKNIIEKLHEIGYNVVAIVSDM 219 (236)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCC
Confidence 4556777888889999999999884
No 298
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=28.40 E-value=98 Score=21.14 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=14.9
Q ss_pred eEEEECCCCcEEEEcCC
Q 027311 193 SKFLVDKEGNVVERYAP 209 (225)
Q Consensus 193 ~~~lid~~G~I~~~~~g 209 (225)
..++.||+|+.+....|
T Consensus 94 ~~~f~DPdG~~ie~~~~ 110 (121)
T cd07244 94 SFYFLDPDGHKLELHVG 110 (121)
T ss_pred EEEEECCCCCEEEEEeC
Confidence 55899999999988877
No 299
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=27.50 E-value=32 Score=21.65 Aligned_cols=14 Identities=29% Similarity=0.615 Sum_probs=11.4
Q ss_pred eEEEECCCCcEEEE
Q 027311 193 SKFLVDKEGNVVER 206 (225)
Q Consensus 193 ~~~lid~~G~I~~~ 206 (225)
..|.||++|++...
T Consensus 20 v~~~I~~~G~v~~~ 33 (79)
T PF03544_consen 20 VEFTIDPDGRVSDV 33 (79)
T ss_dssp EEEEEETTTEEEEE
T ss_pred EEEEEeCCCCEEEE
Confidence 45899999999864
No 300
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=26.87 E-value=69 Score=23.39 Aligned_cols=36 Identities=14% Similarity=0.321 Sum_probs=25.7
Q ss_pred EEEcccCCCCChH-------hHHHHHHHHHHHhcCCeEEEEEe
Q 027311 94 IVNVASQCGLTNS-------NYTELSQLYDKYKNQGLEILAFP 129 (225)
Q Consensus 94 v~F~~twC~~C~~-------~~~~l~~l~~~~~~~~~~iv~Is 129 (225)
|.|-+|-|-.|.. .-..++++.++|+..|+.|+-=+
T Consensus 34 vvfs~TECfVctaAGAMDLEnQ~Rvk~~aEk~g~eNvvVllGa 76 (154)
T PRK13265 34 VVFSSTECFVUTAAGAMDLENQKRVKDLAEKFGAENVVVILGA 76 (154)
T ss_pred EEEEeeeEEEeecccccchHHHHHHHHHHHhcCCccEEEEecc
Confidence 4578899999874 23467788889988877665333
No 301
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=26.81 E-value=1e+02 Score=22.36 Aligned_cols=34 Identities=21% Similarity=0.076 Sum_probs=21.5
Q ss_pred cceeEEEECCCCcEEEEcC----CCCChhhHHHHHHhhh
Q 027311 190 WNFSKFLVDKEGNVVERYA----PTTSPLSIEVVLECLC 224 (225)
Q Consensus 190 ~~P~~~lid~~G~I~~~~~----g~~~~~~l~~~l~~ll 224 (225)
+.|.+-|+ ++|++++... ...+++.+.+.|....
T Consensus 95 SSPS~ALf-KdGelvh~ieRh~IEGr~a~~Ia~~L~~af 132 (136)
T PF06491_consen 95 SSPSIALF-KDGELVHFIERHHIEGRPAEEIAENLQDAF 132 (136)
T ss_dssp -SSEEEEE-ETTEEEEEE-GGGTTTS-HHHHHHHHHHHH
T ss_pred CCchheee-eCCEEEEEeehhhcCCCCHHHHHHHHHHHH
Confidence 35777777 9999998632 2335667777776543
No 302
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=26.48 E-value=3.1e+02 Score=23.13 Aligned_cols=20 Identities=30% Similarity=0.632 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhcCCeEEEEEecC
Q 027311 109 TELSQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 109 ~~l~~l~~~~~~~~~~iv~Is~d 131 (225)
+.+.++.+++ |+.++.++.+
T Consensus 126 ~~~~~ll~~l---g~~v~~~n~~ 145 (355)
T cd03084 126 PIAPQLLEKL---GAEVIPLNCE 145 (355)
T ss_pred HHHHHHHHHc---CCcEEEEcCc
Confidence 3444445444 3566667654
No 303
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=26.29 E-value=1.6e+02 Score=19.51 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=19.6
Q ss_pred ceeEEEECCCCcEEEEc-CCCCC-hhhHHHHHHhhh
Q 027311 191 NFSKFLVDKEGNVVERY-APTTS-PLSIEVVLECLC 224 (225)
Q Consensus 191 ~P~~~lid~~G~I~~~~-~g~~~-~~~l~~~l~~ll 224 (225)
-|..+++|++|+-+--. .|..- ..++.+.|.++|
T Consensus 38 DPaVvvvde~g~~vIplL~GH~GGan~lA~~iA~~l 73 (84)
T PF11760_consen 38 DPAVVVVDEDGRFVIPLLGGHRGGANELARQIAELL 73 (84)
T ss_dssp --EEEEE-TT--EEEEEE-TTTT-HHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCEEEEeccCCcchHHHHHHHHHHHh
Confidence 48889999999866543 33333 578888887765
No 304
>PF14062 DUF4253: Domain of unknown function (DUF4253)
Probab=26.08 E-value=1.2e+02 Score=21.09 Aligned_cols=51 Identities=20% Similarity=0.318 Sum_probs=30.9
Q ss_pred CCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCC---CCCCCCHHHHHHHHHhhcCC
Q 027311 101 CGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFG---AQEPGDNEQIQEFACTRFKA 154 (225)
Q Consensus 101 C~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~---~~~~~~~~~~~~~~~~~~~~ 154 (225)
|+.-...+..++.++++|+ +++++++.|... ...|.+.++..+++.+.+..
T Consensus 26 ~~~~~~~~a~lr~W~er~g---a~i~~i~~d~le~~v~~pP~~~~ea~~lA~E~y~f 79 (111)
T PF14062_consen 26 CPDTADIIAVLRYWEERYG---AEIVGIGFDTLELSVARPPQTPEEAEALAAEHYAF 79 (111)
T ss_pred CCCHHHHHHHHHHHHHHhC---EEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5555556667777777775 667777655322 12344668888888554433
No 305
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=26.03 E-value=90 Score=20.99 Aligned_cols=18 Identities=17% Similarity=0.385 Sum_probs=15.0
Q ss_pred EEEECCCCcEEEEcCCCC
Q 027311 194 KFLVDKEGNVVERYAPTT 211 (225)
Q Consensus 194 ~~lid~~G~I~~~~~g~~ 211 (225)
.++.||+|+.+..+.|..
T Consensus 94 ~~~~DP~Gn~iel~~~~~ 111 (112)
T cd08344 94 VWFRDPDGNLLQVKVAEK 111 (112)
T ss_pred EEEECCCCCEEEEecCCC
Confidence 589999999998887753
No 306
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=25.25 E-value=4.5e+02 Score=23.05 Aligned_cols=10 Identities=40% Similarity=0.730 Sum_probs=6.0
Q ss_pred EEECCCCcEE
Q 027311 195 FLVDKEGNVV 204 (225)
Q Consensus 195 ~lid~~G~I~ 204 (225)
.++|++|+++
T Consensus 248 ~ivd~~G~~i 257 (445)
T cd05803 248 ALVDEDGRPI 257 (445)
T ss_pred EEECCCCCCc
Confidence 4566666644
No 307
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=24.96 E-value=3.8e+02 Score=23.63 Aligned_cols=9 Identities=33% Similarity=0.896 Sum_probs=4.7
Q ss_pred EEECCCCcE
Q 027311 195 FLVDKEGNV 203 (225)
Q Consensus 195 ~lid~~G~I 203 (225)
.+||.+|++
T Consensus 251 ~~vd~~G~~ 259 (450)
T PRK14314 251 IVVDEKGHI 259 (450)
T ss_pred EEECCCCcC
Confidence 455555543
No 308
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=24.72 E-value=1.4e+02 Score=20.08 Aligned_cols=30 Identities=33% Similarity=0.508 Sum_probs=16.5
Q ss_pred HHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHH
Q 027311 114 LYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFA 148 (225)
Q Consensus 114 l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~ 148 (225)
+.++|++..+.+--|.+.. +.+.++-++|+
T Consensus 29 l~RKyp~~~f~~~YiDi~~-----p~~~~~~~~~a 58 (93)
T PF07315_consen 29 LKRKYPDQPFEFTYIDIEN-----PPENDHDQQFA 58 (93)
T ss_dssp HHHH-TTS-EEEEEEETTT---------HHHHHHH
T ss_pred HhCcCCCCceEEEEEecCC-----CCccHHHHHHH
Confidence 6668888888888887653 11334555555
No 309
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=24.58 E-value=3e+02 Score=24.34 Aligned_cols=10 Identities=50% Similarity=0.773 Sum_probs=6.2
Q ss_pred EEECCCCcEE
Q 027311 195 FLVDKEGNVV 204 (225)
Q Consensus 195 ~lid~~G~I~ 204 (225)
.+||.+|+++
T Consensus 262 ~~vd~~G~~i 271 (465)
T PRK14317 262 LAVDGQGRVV 271 (465)
T ss_pred EEECCCCCEE
Confidence 5567777654
No 310
>COG1370 Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=24.47 E-value=1.8e+02 Score=21.57 Aligned_cols=25 Identities=8% Similarity=0.135 Sum_probs=19.0
Q ss_pred eEEEECCCCcEEEEcCCCCChhhHH
Q 027311 193 SKFLVDKEGNVVERYAPTTSPLSIE 217 (225)
Q Consensus 193 ~~~lid~~G~I~~~~~g~~~~~~l~ 217 (225)
...++|+++.+.+...-..+..++.
T Consensus 116 EvlVVne~d~LlAvGra~ls~~E~~ 140 (155)
T COG1370 116 EVLVVNEDDELLAVGRALLSGAEMR 140 (155)
T ss_pred eEEEECCCCcEEEeeeEeecHHHHh
Confidence 5589999999998876666665554
No 311
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=24.46 E-value=47 Score=31.98 Aligned_cols=41 Identities=10% Similarity=0.066 Sum_probs=31.4
Q ss_pred EEEEEEcccCCCCChHh----HHHHHHHHHHHhcCCeEEEEEecC
Q 027311 91 LLLIVNVASQCGLTNSN----YTELSQLYDKYKNQGLEILAFPCN 131 (225)
Q Consensus 91 ~vlv~F~~twC~~C~~~----~~~l~~l~~~~~~~~~~iv~Is~d 131 (225)
+...++-+++|+.|... +..|+.+.++-+++|+.||++-.-
T Consensus 786 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~ig~~~p 830 (912)
T TIGR02171 786 WPVANFDATISDPGQQIINENMNSLKAFIDETAKKGVKVIGTIFP 830 (912)
T ss_pred cccccccccccCccHHHHHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 45556667788988543 567888888888999999999753
No 312
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=24.39 E-value=2.7e+02 Score=24.53 Aligned_cols=9 Identities=44% Similarity=0.888 Sum_probs=6.1
Q ss_pred EEECCCCcE
Q 027311 195 FLVDKEGNV 203 (225)
Q Consensus 195 ~lid~~G~I 203 (225)
.+||++|++
T Consensus 241 ~ivd~~G~~ 249 (445)
T PRK09542 241 FVVDERGQP 249 (445)
T ss_pred EEECCCCCC
Confidence 567777765
No 313
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=24.33 E-value=2.2e+02 Score=18.83 Aligned_cols=40 Identities=18% Similarity=0.064 Sum_probs=31.7
Q ss_pred CCEEEEEEcccCCC-CChHhHHHHHHHHHHHhcCCeEEEEEec
Q 027311 89 GKLLLIVNVASQCG-LTNSNYTELSQLYDKYKNQGLEILAFPC 130 (225)
Q Consensus 89 gk~vlv~F~~twC~-~C~~~~~~l~~l~~~~~~~~~~iv~Is~ 130 (225)
.+.++++| +.++ .-...+..|.+++++++.+|.+++-++.
T Consensus 39 ~~~vilDl--s~v~~iDssgl~~L~~l~~~~~~~g~~l~l~~~ 79 (100)
T cd06844 39 GKTIVIDI--SALEFMDSSGTGVLLERSRLAEAVGGQFVLTGI 79 (100)
T ss_pred CCEEEEEC--CCCcEEcHHHHHHHHHHHHHHHHcCCEEEEECC
Confidence 47899988 5555 5667788899999999988888887764
No 314
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=24.32 E-value=2.2e+02 Score=20.34 Aligned_cols=46 Identities=13% Similarity=0.213 Sum_probs=29.3
Q ss_pred EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHH
Q 027311 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFAC 149 (225)
Q Consensus 93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~ 149 (225)
+..|..+.|..|++...-|++. |+.+-.+..- .++-+.+++.+++.
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~-------gi~~~~~d~~----~~p~t~~eL~~~l~ 48 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKAS-------GHDVEVQDIL----KEPWHADTLRPYFG 48 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-------CCCcEEEecc----CCCcCHHHHHHHHH
Confidence 3345678999999877666553 3444444432 23448899999983
No 315
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=24.28 E-value=1.1e+02 Score=21.65 Aligned_cols=52 Identities=8% Similarity=0.174 Sum_probs=31.5
Q ss_pred EEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcc
Q 027311 94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFP 157 (225)
Q Consensus 94 v~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (225)
-.|+.+.|..|+....-|++..-+ .+++-+.. .+-+.+++.+++ +..+..+.
T Consensus 4 tiy~~p~C~t~rka~~~L~~~gi~-----~~~~~y~~------~~~s~~eL~~~l-~~~g~~~~ 55 (117)
T COG1393 4 TIYGNPNCSTCRKALAWLEEHGIE-----YTFIDYLK------TPPSREELKKIL-SKLGDGVE 55 (117)
T ss_pred EEEeCCCChHHHHHHHHHHHcCCC-----cEEEEeec------CCCCHHHHHHHH-HHcCccHH
Confidence 346688999999766655443222 33444432 334889999998 55565444
No 316
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=24.24 E-value=90 Score=24.10 Aligned_cols=43 Identities=19% Similarity=0.402 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCc
Q 027311 110 ELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEF 156 (225)
Q Consensus 110 ~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (225)
.+.++...++.++-.|.-|+.|.+ .....++++.|+ +..++++
T Consensus 17 t~aKLAa~~~~~~~~v~lis~D~~---R~ga~eQL~~~a-~~l~vp~ 59 (196)
T PF00448_consen 17 TIAKLAARLKLKGKKVALISADTY---RIGAVEQLKTYA-EILGVPF 59 (196)
T ss_dssp HHHHHHHHHHHTT--EEEEEESTS---STHHHHHHHHHH-HHHTEEE
T ss_pred HHHHHHHHHhhccccceeecCCCC---CccHHHHHHHHH-HHhcccc
Confidence 444555555544667777777753 333567888887 5555543
No 317
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=23.53 E-value=5.1e+02 Score=22.73 Aligned_cols=10 Identities=40% Similarity=0.760 Sum_probs=5.7
Q ss_pred EEECCCCcEE
Q 027311 195 FLVDKEGNVV 204 (225)
Q Consensus 195 ~lid~~G~I~ 204 (225)
.+||++|+++
T Consensus 246 ~~vd~~G~~l 255 (443)
T TIGR01455 246 LAVDANGRIV 255 (443)
T ss_pred EEECCCCcEe
Confidence 4566666543
No 318
>cd07201 cPLA2_Grp-IVB-IVD-IVE-IVF Group IVB, IVD, IVE, and IVF cytosolic phospholipase A2; catalytic domain; Ca-dependent. Group IVB, IVD, IVE, and IVF cPLA2 consists of two domains: the regulatory C2 domain and alpha/beta hydrolase PLA2 domain. Group IVB, IVD, IVE, and IVF cPLA2 are also referred to as cPLA2-beta, -delta, -epsilon, and -zeta respectively. cPLA2-beta is approximately 30% identical to cPLA2-alpha and it shows low enzymatic activity compared to cPLA2alpha. cPLA2-beta hydrolyzes palmitic acid from 1-[14C]palmitoyl-2-arachidonoyl-PC and arachidonic acid from 1-palmitoyl-2[14C]arachidonoyl-PC, but not from 1-O-alkyl-2[3H]arachidonoyl-PC. cPLA2-delta, -epsilon, and -zeta are approximately 45-50% identical to cPLA2-beta and 31-37% identical to cPLA2-alpha. It's possible that cPLA2-beta, -delta, -epsilon, and -zeta may have arisen by gene duplication from an ancestral gene. The catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bon
Probab=23.42 E-value=1e+02 Score=28.05 Aligned_cols=53 Identities=13% Similarity=0.208 Sum_probs=33.5
Q ss_pred hcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCCchhhh
Q 027311 119 KNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLY 173 (225)
Q Consensus 119 ~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 173 (225)
++++|.+| |+.|-..+..-.......+|+ .+.+++||-+.....+....++-|
T Consensus 392 P~R~VDlI-isfd~Sa~~~~~~L~~~~~y~-~~~gIpfPk~~~~~~d~~~~kecy 444 (541)
T cd07201 392 PERKVDVI-LSLNYSLGSQFEPLKQASEYC-SEQGIPFPKIELSPEDQENLKECY 444 (541)
T ss_pred CCCcccEE-EEeccccCCcchHHHHHHHHH-HHcCCCCCCCCCChhHccCCceeE
Confidence 35678877 777754444444556778888 788999998743333334444434
No 319
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=23.27 E-value=4.6e+02 Score=22.17 Aligned_cols=37 Identities=16% Similarity=0.227 Sum_probs=25.6
Q ss_pred CccCCCEEEEEEccc----CCCCChHhHHHHHHHHHHHhcC
Q 027311 85 SIYKGKLLLIVNVAS----QCGLTNSNYTELSQLYDKYKNQ 121 (225)
Q Consensus 85 ~~~~gk~vlv~F~~t----wC~~C~~~~~~l~~l~~~~~~~ 121 (225)
+..++-.+++.|.|+ .|..|..+..+++-+.+.+...
T Consensus 56 ~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~ 96 (331)
T KOG2603|consen 56 PPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYN 96 (331)
T ss_pred CCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhcc
Confidence 444554555556554 7999998888888888877643
No 320
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=23.24 E-value=82 Score=20.62 Aligned_cols=16 Identities=38% Similarity=0.509 Sum_probs=10.9
Q ss_pred EEECCCCcEEEEcCCC
Q 027311 195 FLVDKEGNVVERYAPT 210 (225)
Q Consensus 195 ~lid~~G~I~~~~~g~ 210 (225)
.|.|++|+.++++...
T Consensus 29 ~v~d~~g~~vwrwS~~ 44 (82)
T PF12690_consen 29 VVKDKEGKEVWRWSDG 44 (82)
T ss_dssp EEE-TT--EEEETTTT
T ss_pred EEECCCCCEEEEecCC
Confidence 6889999999998754
No 321
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=22.98 E-value=78 Score=19.23 Aligned_cols=19 Identities=5% Similarity=-0.181 Sum_probs=13.0
Q ss_pred EcccCCCCChHhHHHHHHH
Q 027311 96 NVASQCGLTNSNYTELSQL 114 (225)
Q Consensus 96 F~~twC~~C~~~~~~l~~l 114 (225)
|..++|+.|.+..-.+.+.
T Consensus 4 y~~~~s~~~~~~~~~L~~~ 22 (74)
T cd03051 4 YDSPTAPNPRRVRIFLAEK 22 (74)
T ss_pred EeCCCCcchHHHHHHHHHc
Confidence 5567899998666555544
No 322
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=22.90 E-value=4e+02 Score=21.29 Aligned_cols=39 Identities=3% Similarity=0.077 Sum_probs=21.8
Q ss_pred HHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCccee
Q 027311 112 SQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIF 159 (225)
Q Consensus 112 ~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (225)
.+..++++++|+.++-.+ -+ +...+.+++ ++.++..+++
T Consensus 25 ~~ai~~l~~~G~~~~iaT-GR-------~~~~~~~~~-~~l~~~~~~I 63 (272)
T PRK15126 25 LSTLARLRERDITLTFAT-GR-------HVLEMQHIL-GALSLDAYLI 63 (272)
T ss_pred HHHHHHHHHCCCEEEEEC-CC-------CHHHHHHHH-HHcCCCCcEE
Confidence 334444556777777444 32 556666666 5666654443
No 323
>PF13103 TonB_2: TonB C terminal; PDB: 1LR0_A.
Probab=22.80 E-value=1.3e+02 Score=19.19 Aligned_cols=14 Identities=21% Similarity=0.546 Sum_probs=9.7
Q ss_pred eEEEECCCCcEEEE
Q 027311 193 SKFLVDKEGNVVER 206 (225)
Q Consensus 193 ~~~lid~~G~I~~~ 206 (225)
..+-||++|+|...
T Consensus 30 V~i~i~~dG~v~~~ 43 (85)
T PF13103_consen 30 VRITIDPDGRVISV 43 (85)
T ss_dssp EEEEE-TTSBEEEE
T ss_pred EEEEECCCCCEEEE
Confidence 44889999999543
No 324
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=22.61 E-value=5.3e+02 Score=22.66 Aligned_cols=10 Identities=60% Similarity=0.886 Sum_probs=6.6
Q ss_pred EEECCCCcEE
Q 027311 195 FLVDKEGNVV 204 (225)
Q Consensus 195 ~lid~~G~I~ 204 (225)
.+||++|+++
T Consensus 249 ~~vd~~G~~l 258 (448)
T PRK14318 249 LAVDANGNVV 258 (448)
T ss_pred EEECCCCcEe
Confidence 5667777654
No 325
>PF14903 WG_beta_rep: WG containing repeat
Probab=22.36 E-value=60 Score=16.68 Aligned_cols=11 Identities=36% Similarity=0.673 Sum_probs=8.8
Q ss_pred EECCCCcEEEE
Q 027311 196 LVDKEGNVVER 206 (225)
Q Consensus 196 lid~~G~I~~~ 206 (225)
+||.+|+++-.
T Consensus 3 ~id~~G~~vi~ 13 (35)
T PF14903_consen 3 YIDKNGKIVIP 13 (35)
T ss_pred EEeCCCCEEEE
Confidence 68999998753
No 326
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=22.18 E-value=1.2e+02 Score=18.51 Aligned_cols=14 Identities=36% Similarity=0.627 Sum_probs=11.5
Q ss_pred eEEEECCCCcEEEE
Q 027311 193 SKFLVDKEGNVVER 206 (225)
Q Consensus 193 ~~~lid~~G~I~~~ 206 (225)
-.|.||++|++...
T Consensus 14 v~~~i~~~G~v~~~ 27 (74)
T TIGR01352 14 VRFTVDADGRVTSV 27 (74)
T ss_pred EEEEECCCCCEEEE
Confidence 45899999999765
No 327
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=21.92 E-value=72 Score=20.09 Aligned_cols=18 Identities=6% Similarity=-0.127 Sum_probs=11.9
Q ss_pred EcccCCCCChHhHHHHHH
Q 027311 96 NVASQCGLTNSNYTELSQ 113 (225)
Q Consensus 96 F~~twC~~C~~~~~~l~~ 113 (225)
+..++||.|.+..-.|.+
T Consensus 5 y~~~~sp~~~kv~~~L~~ 22 (77)
T cd03041 5 YEFEGSPFCRLVREVLTE 22 (77)
T ss_pred ecCCCCchHHHHHHHHHH
Confidence 446799999865554444
No 328
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=21.89 E-value=72 Score=19.88 Aligned_cols=18 Identities=11% Similarity=0.006 Sum_probs=12.1
Q ss_pred EcccCCCCChHhHHHHHH
Q 027311 96 NVASQCGLTNSNYTELSQ 113 (225)
Q Consensus 96 F~~twC~~C~~~~~~l~~ 113 (225)
|....||.|++..-.|.+
T Consensus 5 y~~~~~p~c~kv~~~L~~ 22 (77)
T cd03040 5 YQYKTCPFCCKVRAFLDY 22 (77)
T ss_pred EEcCCCHHHHHHHHHHHH
Confidence 456789999876654443
No 329
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=21.80 E-value=48 Score=21.06 Aligned_cols=14 Identities=36% Similarity=0.800 Sum_probs=11.2
Q ss_pred eEEEECCCCcEEEE
Q 027311 193 SKFLVDKEGNVVER 206 (225)
Q Consensus 193 ~~~lid~~G~I~~~ 206 (225)
..||+|++|++++.
T Consensus 55 ~~~ivd~~G~ii~h 68 (81)
T PF02743_consen 55 YAFIVDKNGTIIAH 68 (81)
T ss_dssp EEEEEETTSBBCE-
T ss_pred EEEEEECCCCEEEe
Confidence 45899999999865
No 330
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=21.75 E-value=1.9e+02 Score=19.75 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=27.4
Q ss_pred cccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcce
Q 027311 97 VASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPI 158 (225)
Q Consensus 97 ~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (225)
..+.|..|++.+.-|++ .|+.+-.+..- .++-+.+++.+++ +..+..+.-
T Consensus 2 ~~~~C~t~rka~~~L~~-------~gi~~~~~d~~----k~p~s~~el~~~l-~~~~~~~~~ 51 (110)
T PF03960_consen 2 GNPNCSTCRKALKWLEE-------NGIEYEFIDYK----KEPLSREELRELL-SKLGNGPDD 51 (110)
T ss_dssp E-TT-HHHHHHHHHHHH-------TT--EEEEETT----TS---HHHHHHHH-HHHTSSGGG
T ss_pred cCCCCHHHHHHHHHHHH-------cCCCeEeehhh----hCCCCHHHHHHHH-HHhcccHHH
Confidence 45678888866655543 44556556653 3445889999998 666655443
No 331
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=21.52 E-value=1.1e+02 Score=25.27 Aligned_cols=22 Identities=14% Similarity=0.069 Sum_probs=14.0
Q ss_pred EcccCCCCChHhHHHHHHHHHHH
Q 027311 96 NVASQCGLTNSNYTELSQLYDKY 118 (225)
Q Consensus 96 F~~twC~~C~~~~~~l~~l~~~~ 118 (225)
...+|||.|-... .++.+.+.+
T Consensus 15 ~~~~~CpGCg~~~-il~~l~~al 36 (286)
T PRK11867 15 QEPRWCPGCGDGS-ILAALQRAL 36 (286)
T ss_pred CCCCcCCCCCCHH-HHHHHHHHH
Confidence 4446999998544 555555555
No 332
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=21.29 E-value=4e+02 Score=23.38 Aligned_cols=10 Identities=30% Similarity=0.849 Sum_probs=5.8
Q ss_pred CeEEEEEecC
Q 027311 122 GLEILAFPCN 131 (225)
Q Consensus 122 ~~~iv~Is~d 131 (225)
|++++.++..
T Consensus 187 G~~v~~i~~~ 196 (443)
T cd03089 187 GCEVIPLFCE 196 (443)
T ss_pred CCEEEEecCC
Confidence 4566666644
No 333
>PF02941 FeThRed_A: Ferredoxin thioredoxin reductase variable alpha chain; InterPro: IPR004207 Ferredoxin thioredoxin reductase is a [4FE-4S] protein which plays an important role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin), regulating enzymes by reduction of specific disulphide groups. It catalyses the light-dependent activation of several photosynthetis enzymes. Ferredoxin thioredoxin reductase is a heterodimer of subunit a and subunit b. Subunit a is the variable subunit, and b is the catalytic chain. This family is the alpha chain.; GO: 0008937 ferredoxin-NAD(P) reductase activity, 0015979 photosynthesis, 0009536 plastid; PDB: 2PUK_B 2PVO_B 2PVG_B 1DJ7_B 2PVD_B 2PU9_B 2PUO_B.
Probab=21.15 E-value=51 Score=20.77 Aligned_cols=31 Identities=16% Similarity=0.242 Sum_probs=18.2
Q ss_pred ceecCeEEeCCCCCeec-CCccCCC------EEEEEEc
Q 027311 67 TSVHDFSVKDAKGQDVD-LSIYKGK------LLLIVNV 97 (225)
Q Consensus 67 ~~~p~f~l~~~~G~~~~-l~~~~gk------~vlv~F~ 97 (225)
...+.|.+...+|.... +.+++|| |+.|.|-
T Consensus 19 hr~~~fDl~G~EGev~~~v~~wkGr~iSanlP~~V~F~ 56 (67)
T PF02941_consen 19 HRNPPFDLKGMEGEVKQIVTDWKGRPISANLPVKVQFD 56 (67)
T ss_dssp STTS-EE-TT-EEEEEEE-SEETTEE---SS-EEEEET
T ss_pred ccCCCccccCCEEEEEEEEeecCCcEecCCCcEEEEEe
Confidence 44677888888887655 5668888 4566654
No 334
>PRK14321 glmM phosphoglucosamine mutase; Provisional
Probab=21.09 E-value=5e+02 Score=22.86 Aligned_cols=10 Identities=50% Similarity=0.694 Sum_probs=6.5
Q ss_pred EEECCCCcEE
Q 027311 195 FLVDKEGNVV 204 (225)
Q Consensus 195 ~lid~~G~I~ 204 (225)
.+||.+|+++
T Consensus 240 ~vvd~~G~~~ 249 (449)
T PRK14321 240 GVVDDQGNFV 249 (449)
T ss_pred EEECCCCCEe
Confidence 5667777665
No 335
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=21.02 E-value=1.1e+02 Score=25.63 Aligned_cols=22 Identities=9% Similarity=0.185 Sum_probs=12.9
Q ss_pred cccCCCCChHhHHHHHHHHHHHh
Q 027311 97 VASQCGLTNSNYTELSQLYDKYK 119 (225)
Q Consensus 97 ~~twC~~C~~~~~~l~~l~~~~~ 119 (225)
..+|||.|-. ...++.+.+.+.
T Consensus 17 ~~~~CpGCg~-~~i~~~i~~al~ 38 (301)
T PRK05778 17 PTTWCPGCGN-FGILNAIIQALA 38 (301)
T ss_pred CCCCCCCCCC-hHHHHHHHHHHH
Confidence 3569999983 344444444443
No 336
>PF03259 Robl_LC7: Roadblock/LC7 domain; InterPro: IPR004942 This family includes proteins that are about 100 amino acids long and have been shown to be related []. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions []. This family also includes Golgi-associated MP1 adapter protein (Q9Y2Q5 from SWISSPROT) and MglB from Myxococcus xanthus (Q50883 from SWISSPROT), a protein involved in gliding motility []. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.; PDB: 2B95_B 1Z09_A 2E8J_B 2HZ5_B 3KYE_A 2ZL1_B 1SKO_B 3CPT_B 1VEU_B 1VET_B ....
Probab=21.00 E-value=84 Score=20.22 Aligned_cols=15 Identities=40% Similarity=0.552 Sum_probs=13.2
Q ss_pred eeEEEECCCCcEEEE
Q 027311 192 FSKFLVDKEGNVVER 206 (225)
Q Consensus 192 P~~~lid~~G~I~~~ 206 (225)
=..+|+|++|.++..
T Consensus 16 ~~~~l~~~dG~~i~~ 30 (91)
T PF03259_consen 16 RGAVLVDKDGLVIAS 30 (91)
T ss_dssp EEEEEEETTSEEEEE
T ss_pred eEEEEEcCCCCEEEE
Confidence 366999999999988
No 337
>PF05228 CHASE4: CHASE4 domain; InterPro: IPR007892 CHASE4 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in prokaryotes. Specifically, CHASE4 domains are found in histidine kinases in archaea and in predicted diguanylate cyclases/phosphodiesterases in bacteria. Environmental factors that are recognised by CHASE4 domains are not known at this time [].
Probab=20.49 E-value=1.1e+02 Score=22.24 Aligned_cols=13 Identities=31% Similarity=0.606 Sum_probs=11.9
Q ss_pred eEEEECCCCcEEE
Q 027311 193 SKFLVDKEGNVVE 205 (225)
Q Consensus 193 ~~~lid~~G~I~~ 205 (225)
.++++|++|++++
T Consensus 52 ~~~~~d~~g~~~~ 64 (161)
T PF05228_consen 52 LIFILDPDGRVLY 64 (161)
T ss_pred EEEEEcCCCCEEE
Confidence 5699999999998
No 338
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=20.47 E-value=1.5e+02 Score=20.80 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=23.2
Q ss_pred ecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHH
Q 027311 82 VDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKY 118 (225)
Q Consensus 82 ~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~ 118 (225)
+.+++..|..++|.=-..=|+.|+-. |+...++.
T Consensus 59 l~~~~~~Gd~m~I~G~ypPC~~CkG~---Mr~~s~~~ 92 (118)
T PF14427_consen 59 LPLNQVPGDRMLIDGQYPPCNSCKGK---MRRASEKS 92 (118)
T ss_pred cCccccCCceEEEeeecCCCchhHHH---HHHhhhcc
Confidence 44556679999998777788999854 44444444
No 339
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=20.11 E-value=89 Score=18.19 Aligned_cols=30 Identities=7% Similarity=-0.143 Sum_probs=17.3
Q ss_pred EcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEec
Q 027311 96 NVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC 130 (225)
Q Consensus 96 F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~ 130 (225)
|...+||.|.+....++... -.++++.++.
T Consensus 4 y~~~~~~~~~~~~~~l~~~~-----i~~~~~~~~~ 33 (71)
T cd00570 4 YYFPGSPRSLRVRLALEEKG-----LPYELVPVDL 33 (71)
T ss_pred EeCCCCccHHHHHHHHHHcC-----CCcEEEEeCC
Confidence 44678999996555554442 2255555543
No 340
>PRK12359 flavodoxin FldB; Provisional
Probab=20.10 E-value=3.6e+02 Score=20.36 Aligned_cols=12 Identities=25% Similarity=0.075 Sum_probs=6.2
Q ss_pred ChhhHHHHHHhh
Q 027311 212 SPLSIEVVLECL 223 (225)
Q Consensus 212 ~~~~l~~~l~~l 223 (225)
+.+.+++.++++
T Consensus 153 t~~ri~~W~~~~ 164 (172)
T PRK12359 153 SDERIQQWCEQI 164 (172)
T ss_pred hHHHHHHHHHHH
Confidence 445555555544
Done!