BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027312
(225 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225468957|ref|XP_002274855.1| PREDICTED: uncharacterized protein LOC100246461 isoform 1 [Vitis
vinifera]
gi|359495604|ref|XP_003635035.1| PREDICTED: uncharacterized protein LOC100246461 isoform 2 [Vitis
vinifera]
gi|297736694|emb|CBI25730.3| unnamed protein product [Vitis vinifera]
Length = 239
Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 132/222 (59%), Positives = 168/222 (75%), Gaps = 2/222 (0%)
Query: 6 GGKGGGVGGG-GKTSLKS-IPASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDG 63
GGKG + GK+S KS + ASL GKDD++AKSKRGRKVQFN GL E + T S S G
Sbjct: 5 GGKGFSLNSNLGKSSTKSPLEASLTGKDDSAAKSKRGRKVQFNNGGLPEARLTSSLMSGG 64
Query: 64 KFETTYGKGGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILE 123
K + KG L+KGGKG +V NG K +V K PLELR+EQELPKNAKC+MDCEAA IL+
Sbjct: 65 KTDIPIAKGDLSKGGKGGRVLNGEKSAVPKPPAPLELRIEQELPKNAKCMMDCEAALILK 124
Query: 124 GIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVI 183
GIQEQM +LS DPTIKIP+SF+KGL YA++ + + +PQ+V+ + + LS++GV+DGEICVI
Sbjct: 125 GIQEQMVVLSEDPTIKIPLSFNKGLQYAQSSNCYASPQSVRLVLEPLSKYGVSDGEICVI 184
Query: 184 ANICPETVEEAYAIVPSLKAKRSRLNDLLKEVLIQLAKFKST 225
AN CPET++E +A+VPSLK K S L + LK+VL LA+ K +
Sbjct: 185 ANTCPETIDEVFALVPSLKPKWSTLREPLKDVLRGLAELKHS 226
>gi|255568114|ref|XP_002525033.1| conserved hypothetical protein [Ricinus communis]
gi|223535695|gb|EEF37360.1| conserved hypothetical protein [Ricinus communis]
Length = 203
Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 127/225 (56%), Positives = 166/225 (73%), Gaps = 27/225 (12%)
Query: 1 MEKGGGGKGGGVGGGG-KTSLKSI-PASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFS 58
MEKGG KG + G G K+SLKSI PAS GKDD SAKSKRG+KVQFN++G
Sbjct: 1 MEKGG--KGFSLPGKGLKSSLKSITPASTKGKDDTSAKSKRGKKVQFNSQG--------- 49
Query: 59 SKSDGKFETTYGKGGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDCEA 118
++KGGKGDKV+NG K+S KE PLEL++EQ+LPKNAKCLMDCEA
Sbjct: 50 --------------NMSKGGKGDKVSNGVKISSTKEPQPLELKIEQDLPKNAKCLMDCEA 95
Query: 119 AHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDG 178
A +L+GIQEQM LLS DPTIK+PVSFD+ L +A+T + FTNPQ+V+ + + L +HGV++G
Sbjct: 96 AQVLQGIQEQMVLLSRDPTIKLPVSFDRALQHARTGARFTNPQSVRRILEGLKKHGVSEG 155
Query: 179 EICVIANICPETVEEAYAIVPSLKAKRSRLNDLLKEVLIQLAKFK 223
EIC IAN+CP+ V+E +A+VPSLK+K++ L + LK++L QL++ K
Sbjct: 156 EICTIANVCPDGVDEVFALVPSLKSKKNVLREPLKDILGQLSELK 200
>gi|449491225|ref|XP_004158834.1| PREDICTED: DNA-directed RNA polymerase II subunit rpb4-like
[Cucumis sativus]
Length = 220
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 118/215 (54%), Positives = 154/215 (71%), Gaps = 15/215 (6%)
Query: 16 GKTSLKSIP---ASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGKFETTYGKG 72
K+SLKS ASL GKDD+ +K K+GRKVQF+ +G + TFS K GK G
Sbjct: 16 AKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDATNTFSMKYSGK------NG 69
Query: 73 GLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKC--LMDCEAAHILEGIQEQMA 130
L KGGKG AN K S+ KE LEL++EQELPKN KC LMDCEAA +L+GIQ+QM
Sbjct: 70 DLGKGGKG---AN-TKASIAKEPQALELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQMV 125
Query: 131 LLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPET 190
LSADPTIKIP SFD+GL YAK +H+ N ++V+ + ++L ++GVTD EICVIAN+CP+T
Sbjct: 126 FLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGVTDSEICVIANVCPDT 185
Query: 191 VEEAYAIVPSLKAKRSRLNDLLKEVLIQLAKFKST 225
+E +A++PSLK KRS+L++ + VL +LAK KS+
Sbjct: 186 TDEVFALLPSLKRKRSKLSEPINNVLSELAKVKSS 220
>gi|449434414|ref|XP_004134991.1| PREDICTED: uncharacterized protein LOC101213971 [Cucumis sativus]
Length = 242
Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 118/215 (54%), Positives = 153/215 (71%), Gaps = 15/215 (6%)
Query: 16 GKTSLKSIP---ASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGKFETTYGKG 72
K+SLKS ASL GKDD+ +K K+GRKVQF+ +G + TFS K GK G
Sbjct: 16 AKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDATNTFSMKYSGK------NG 69
Query: 73 GLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKC--LMDCEAAHILEGIQEQMA 130
L KGGKG AN K S+ KE LEL++EQELPKN KC LMDCEAA +L+GIQ+QM
Sbjct: 70 DLGKGGKG---AN-TKASIAKEPQALELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQMV 125
Query: 131 LLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPET 190
LSADPTIKIP SFD+GL YAK +H+ N ++V+ + ++L ++GVTD EICVIAN+CP+T
Sbjct: 126 FLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGVTDSEICVIANVCPDT 185
Query: 191 VEEAYAIVPSLKAKRSRLNDLLKEVLIQLAKFKST 225
+E +A++PSLK KRS+L++ + VL +LAK KS
Sbjct: 186 TDEVFALLPSLKRKRSKLSEPINNVLSELAKVKSC 220
>gi|224124738|ref|XP_002329936.1| predicted protein [Populus trichocarpa]
gi|222871958|gb|EEF09089.1| predicted protein [Populus trichocarpa]
Length = 197
Score = 206 bits (523), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 102/187 (54%), Positives = 133/187 (71%), Gaps = 23/187 (12%)
Query: 37 SKRGRKVQFNTEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGDKVANGAKVSVVKEAL 96
S GRK+ F +EG L+KGGKG K+ANG K + KE
Sbjct: 31 SNNGRKIHFESEG-----------------------NLSKGGKGGKIANGGKSPMTKEPP 67
Query: 97 PLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSH 156
PLEL++E ELP+NAK LMDCEAA IL+GIQ+QM LLS DPTIK+PVSFDKGL YAK +H
Sbjct: 68 PLELKIESELPQNAKPLMDCEAAQILQGIQDQMVLLSQDPTIKLPVSFDKGLQYAKNGAH 127
Query: 157 FTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDLLKEVL 216
+TNPQ+V+ + ++L ++GV+DGEI +IAN+ PET +EA+A+VPSLK+K S L + LK++L
Sbjct: 128 YTNPQSVRRVLEALRKYGVSDGEISLIANVFPETADEAFALVPSLKSKASTLREPLKDIL 187
Query: 217 IQLAKFK 223
+LAKFK
Sbjct: 188 GELAKFK 194
>gi|356532865|ref|XP_003534990.1| PREDICTED: DNA-directed RNA polymerase II subunit rpb4-like
[Glycine max]
Length = 211
Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 109/229 (47%), Positives = 151/229 (65%), Gaps = 23/229 (10%)
Query: 1 MEKGGGGKG----GGVGGGGKTSLKSIPASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFT 56
MEKGG G GG+G SL GKDD + KS +GR+VQF+T+G
Sbjct: 1 MEKGGKGASLFSKGGLG------------SLKGKDDIATKSAKGRRVQFSTDGP-----L 43
Query: 57 FSSKSDGKFETTYGKGGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDC 116
F S T+ GG KGG GD VA G K S K++ P + RV+Q+LP+N KCLMDC
Sbjct: 44 FESGVSSNSATSLKSGG--KGGMGDNVAKGGKNSQSKDSHPSDYRVDQKLPENIKCLMDC 101
Query: 117 EAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVT 176
EA IL+GIQE+M +LS D T+K+P+SFDKGL YAK++S + + Q+++ + L++ GVT
Sbjct: 102 EAVDILQGIQERMVMLSRDSTVKMPISFDKGLQYAKSNSKYLDLQSIRHILDRLAKCGVT 161
Query: 177 DGEICVIANICPETVEEAYAIVPSLKAKRSRLNDLLKEVLIQLAKFKST 225
D EICVI N+CPET++E +A++PSLK +R+ + +LK+ L +LAKF+ T
Sbjct: 162 DSEICVIGNVCPETIDEVFALLPSLKDRRNIDSQVLKDSLSELAKFRQT 210
>gi|388515433|gb|AFK45778.1| unknown [Medicago truncatula]
Length = 201
Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 108/220 (49%), Positives = 143/220 (65%), Gaps = 28/220 (12%)
Query: 6 GGKGGGVGGGGKTSLKSIPASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGKF 65
GGKGG + G L GKDD++ KS + RKVQF +EGL F S+S+G
Sbjct: 5 GGKGGSLLSKG---------GLKGKDDSATKSAKARKVQF-SEGL------FESRSNGP- 47
Query: 66 ETTYGKGGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGI 125
T GGKGDKVANG K S K+ E RV+QELP+N KCLMDCEAA +L+GI
Sbjct: 48 ---------TSGGKGDKVANGGKSSAAKDPHQFEHRVDQELPENFKCLMDCEAAVMLQGI 98
Query: 126 QEQMALLSADPTIKIPVSFDKGL--LYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVI 183
Q+QM LS DP+IK+P SFDKGL + + S ++NP++V+ + L H +T+ EICVI
Sbjct: 99 QDQMVALSRDPSIKMPASFDKGLYYAKSSSSSKYSNPESVRHTLEPLMNHDLTESEICVI 158
Query: 184 ANICPETVEEAYAIVPSLKAKRSRLNDLLKEVLIQLAKFK 223
AN+CPET +E +A++PSLK+KR + ++E L +LAKFK
Sbjct: 159 ANVCPETADEVFALLPSLKSKRGINSQPVEEALSELAKFK 198
>gi|357448135|ref|XP_003594343.1| DNA-directed RNA polymerase II subunit rpb4 [Medicago truncatula]
gi|124360902|gb|ABN08874.1| RNA polymerase Rpb4 [Medicago truncatula]
gi|355483391|gb|AES64594.1| DNA-directed RNA polymerase II subunit rpb4 [Medicago truncatula]
Length = 223
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 99/195 (50%), Positives = 133/195 (68%), Gaps = 19/195 (9%)
Query: 31 DDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGDKVANGAKVS 90
DD++ KS + RKVQF +EGL F S+S+G T GGKGDKVANG K S
Sbjct: 43 DDSATKSAKARKVQF-SEGL------FESRSNGP----------TSGGKGDKVANGGKSS 85
Query: 91 VVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGL-- 148
K+ E RV+QELP+N KCLMDCEAA +L+GIQ+QM LS DP+IK+P SFDKGL
Sbjct: 86 AAKDPHQFEHRVDQELPENFKCLMDCEAAVMLQGIQDQMVALSRDPSIKMPASFDKGLYY 145
Query: 149 LYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRL 208
+ + S ++NP++V+ + L H +T+ EICVIAN+CPET +E +A++PSLK+KR
Sbjct: 146 AKSSSSSKYSNPESVRHTLEPLMNHDLTESEICVIANVCPETADEVFALLPSLKSKRGIN 205
Query: 209 NDLLKEVLIQLAKFK 223
+ ++E L +LAKFK
Sbjct: 206 SQPVEEALSELAKFK 220
>gi|297804626|ref|XP_002870197.1| At4g15950 [Arabidopsis lyrata subsp. lyrata]
gi|297316033|gb|EFH46456.1| At4g15950 [Arabidopsis lyrata subsp. lyrata]
Length = 210
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/215 (43%), Positives = 135/215 (62%), Gaps = 13/215 (6%)
Query: 13 GGGGKTSLKSIPASL--GGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGKFETTYG 70
G G K+SLKS L GGKD NS K K+GRK+ F+ +G + +G +
Sbjct: 6 GKGLKSSLKSKDGFLVAGGKDGNSTKLKKGRKIHFD-QGTPPPNYKIL---NGSSDPLPF 61
Query: 71 KGGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMA 130
+ K GKGDK +K S+ EL+ +LP+NA+C+MDCEA IL+GI+ +
Sbjct: 62 QSSAAKVGKGDKPTKSSKNSLQS----FELK---DLPENAECMMDCEAFQILDGIKGHLV 114
Query: 131 LLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPET 190
LS DP+IKIPVS+D+ L Y + H++NPQ+V+ + + L HGV+DGE+CVIAN P+T
Sbjct: 115 GLSEDPSIKIPVSYDRALAYVDSCVHYSNPQSVRKVLEPLKTHGVSDGEMCVIANASPDT 174
Query: 191 VEEAYAIVPSLKAKRSRLNDLLKEVLIQLAKFKST 225
V+E A +PSLKAK+ +N L++ L++LAK K +
Sbjct: 175 VDEVLAFIPSLKAKKEVINQPLQDALVELAKLKKS 209
>gi|334186572|ref|NP_193330.2| RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]
gi|332658269|gb|AEE83669.1| RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]
Length = 205
Score = 156 bits (395), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 133/214 (62%), Gaps = 16/214 (7%)
Query: 13 GGGGKTSLKSIPASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGK-FETTYGK 71
G G K+SLKS GGKD +S K K+GRK+ F+ + SD + F+++ K
Sbjct: 6 GKGLKSSLKS---KDGGKDGSSTKLKKGRKIHFDQRTPPANYKILNVSSDQQPFQSSAAK 62
Query: 72 GGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMAL 131
G K DK +K S+ EL+ +LP+NA+C+MDCEA IL+GI+ Q+
Sbjct: 63 CG-----KSDKPTKSSKNSLHS----FELK---DLPENAECMMDCEAFQILDGIKGQLVG 110
Query: 132 LSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETV 191
LS DP+IKIPVS+D+ L Y ++ H+TNPQ+V+ + + L +G++DGE+CVIAN E+V
Sbjct: 111 LSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLEPLKTYGISDGEMCVIANASSESV 170
Query: 192 EEAYAIVPSLKAKRSRLNDLLKEVLIQLAKFKST 225
+E A +PSLK K+ +N L++ L +L+K K +
Sbjct: 171 DEVLAFIPSLKTKKEVINQPLQDALEELSKLKKS 204
>gi|50253574|gb|AAT71989.1| At4g15950 [Arabidopsis thaliana]
gi|51971649|dbj|BAD44489.1| unnamed protein product [Arabidopsis thaliana]
Length = 205
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 135/215 (62%), Gaps = 18/215 (8%)
Query: 13 GGGGKTSLKSIPASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGK--FETTYG 70
G G K+SLKS GGKD +S K K+GRK+ F+ +G + + S + F+++
Sbjct: 6 GKGLKSSLKS---KDGGKDGSSTKLKKGRKIHFD-QGTPPANYKILNVSSDQQPFQSSAA 61
Query: 71 KGGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMA 130
K G K DK +K S+ EL+ +LP+NA+C+MDCEA IL+GI+ Q+
Sbjct: 62 KCG-----KSDKPTKSSKNSLHS----FELK---DLPENAECMMDCEAFQILDGIKGQLV 109
Query: 131 LLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPET 190
LS DP+IKIPVS+D+ L Y ++ H+TNPQ+V+ + + L +G++DGE+CVIAN E+
Sbjct: 110 GLSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLEPLKTYGISDGEMCVIANASSES 169
Query: 191 VEEAYAIVPSLKAKRSRLNDLLKEVLIQLAKFKST 225
V+E A +PSLK K+ +N L++ L +L+K K +
Sbjct: 170 VDEVLAFIPSLKTKKEVINQPLQDALEELSKLKKS 204
>gi|212275294|ref|NP_001130236.1| uncharacterized protein LOC100191330 [Zea mays]
gi|194688634|gb|ACF78401.1| unknown [Zea mays]
gi|194692750|gb|ACF80459.1| unknown [Zea mays]
gi|195621576|gb|ACG32618.1| hypothetical protein [Zea mays]
gi|195623648|gb|ACG33654.1| hypothetical protein [Zea mays]
gi|238014082|gb|ACR38076.1| unknown [Zea mays]
gi|413923710|gb|AFW63642.1| alpha-6-galactosyltransferase, mRNA isoform 1 [Zea mays]
gi|413923711|gb|AFW63643.1| alpha-6-galactosyltransferase, mRNA isoform 2 [Zea mays]
gi|413923712|gb|AFW63644.1| alpha-6-galactosyltransferase, mRNA isoform 3 [Zea mays]
gi|413923713|gb|AFW63645.1| alpha-6-galactosyltransferase, mRNA isoform 4 [Zea mays]
gi|413923714|gb|AFW63646.1| hypothetical protein ZEAMMB73_143964 [Zea mays]
Length = 219
Score = 149 bits (376), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 88/191 (46%), Positives = 115/191 (60%), Gaps = 12/191 (6%)
Query: 46 NTEGLSEGKFTFSSKSDGKFETTYGKGG-----LTKG----GKG---DKVANGAKVSVVK 93
++EG E SKS+GK + K G L+KG GK DK G+ V
Sbjct: 27 DSEGFVEELTPVHSKSNGKASSASLKTGGKASALSKGEASKGKAYSSDKGGKGSSSHAVP 86
Query: 94 EALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKT 153
EL++E ++P N++ LM+CEAA +L+ I E MA+LS DP IKIP SFDK Y+K
Sbjct: 87 TKSDAELKLELDIPPNSRMLMNCEAAELLQEIHEHMAILSEDPKIKIPESFDKAFQYSKD 146
Query: 154 HSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDLLK 213
+HFT +VK + L + GV+DGEIC+IANI PETVEE YA+VPSLKA RS + +
Sbjct: 147 GNHFTTASSVKQAIEPLKKCGVSDGEICMIANIGPETVEEVYALVPSLKANRSAIEGSVT 206
Query: 214 EVLIQLAKFKS 224
EVL LA K+
Sbjct: 207 EVLTALANIKA 217
>gi|326521954|dbj|BAK04105.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 231
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 111/182 (60%), Gaps = 3/182 (1%)
Query: 47 TEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGDKVANGAKVSV--VKEALP-LELRVE 103
T S GK + S G +++ G +KGGK G K S K A+ EL+++
Sbjct: 49 THSKSNGKASSDSLKTGGKGSSFSNGEGSKGGKAFSAGKGGKASASNAKPAMSDAELKLQ 108
Query: 104 QELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAV 163
++ N+K L +CE A +L+ I E MA+LS DP IKIP SFDK LYAK +HFT+ + V
Sbjct: 109 LDMSPNSKLLTNCEVAEMLQKIHEHMAILSEDPKIKIPESFDKAFLYAKEGNHFTSAKLV 168
Query: 164 KGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDLLKEVLIQLAKFK 223
K + L ++GV DGEIC+IANI PET+EE YA++PSLKA RS + E L LAK K
Sbjct: 169 KEILGPLKDYGVNDGEICMIANIGPETIEEVYALIPSLKATRSINEGKIAEALTALAKIK 228
Query: 224 ST 225
++
Sbjct: 229 AS 230
>gi|215769042|dbj|BAH01271.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 239
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 128/238 (53%), Gaps = 18/238 (7%)
Query: 2 EKGGGGKGGGVGGGGKTSLKSIPASL--GGKDDNSAKSKRGRKVQFNT--EGLSEGKFTF 57
E+G G G S K +P ++ G NS+ + + ++ EG E
Sbjct: 3 ERGSRGFSAASKGKAIASKKDLPMNVFTGSLRQNSSANIPHVNIDSDSDSEGFVEELPRV 62
Query: 58 SSKSDGKFETTYGKGGLTKGGKGD-----------KVANGAKVSVVKEALPLELRVEQEL 106
+SK++GK + K G KG K + A+VS +A EL++E ++
Sbjct: 63 NSKTNGKAASESLKTGGKASSKGQTGKGGNAGKGGKGSASARVSAKSDA---ELKLELDM 119
Query: 107 PKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGL 166
P N+ LM+CE A +L+ I E MA+LS DP IKIP SFDK Y K + F+ Q+VK +
Sbjct: 120 PPNSCILMNCEVAELLQEIHEHMAILSEDPKIKIPESFDKAFQYVKEGNQFSTAQSVKQV 179
Query: 167 FQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDLLKEVLIQLAKFKS 224
L ++GV+DGE+C+IAN+ PET+EE YA+VPSLKA RS + E L LA K+
Sbjct: 180 LDPLRKYGVSDGEMCLIANVGPETIEEVYALVPSLKATRSLNESPIMEALTALADIKA 237
>gi|218191483|gb|EEC73910.1| hypothetical protein OsI_08747 [Oryza sativa Indica Group]
gi|222623580|gb|EEE57712.1| hypothetical protein OsJ_08195 [Oryza sativa Japonica Group]
Length = 231
Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 79/190 (41%), Positives = 111/190 (58%), Gaps = 14/190 (7%)
Query: 46 NTEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGD-----------KVANGAKVSVVKE 94
++EG E +SK++GK + K G KG K + A+VS +
Sbjct: 43 DSEGFVEELPRVNSKTNGKAASESLKTGGKASSKGQTGKGGNAGKGGKGSASARVSAKSD 102
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
A EL++E ++P N+ LM+CE A +L+ I E MA+LS DP IKIP SFDK Y K
Sbjct: 103 A---ELKLELDMPPNSCILMNCEVAELLQEIHEHMAILSEDPKIKIPESFDKAFQYVKEG 159
Query: 155 SHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDLLKE 214
+ F+ Q+VK + L ++GV+DGE+C+IAN+ PET+EE YA+VPSLKA RS + E
Sbjct: 160 NQFSTAQSVKQVLDPLRKYGVSDGEMCLIANVGPETIEEVYALVPSLKATRSLNESPIME 219
Query: 215 VLIQLAKFKS 224
L LA K+
Sbjct: 220 ALTALADIKA 229
>gi|45735999|dbj|BAD13027.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 238
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 80/197 (40%), Positives = 113/197 (57%), Gaps = 21/197 (10%)
Query: 46 NTEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGD-----------KVANGAKVSVVKE 94
++EG E +SK++GK + K G KG K + A+VS +
Sbjct: 43 DSEGFVEELPRVNSKTNGKAASESLKTGGKASSKGQTGKGGNAGKGGKGSASARVSAKSD 102
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
A EL++E ++P N+ LM+CE A +L+ I E MA+LS DP IKIP SFDK Y K
Sbjct: 103 A---ELKLELDMPPNSCILMNCEVAELLQEIHEHMAILSEDPKIKIPESFDKAFQYVKEG 159
Query: 155 SHFTNPQAVKGLFQSLS-------EHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSR 207
+ F+ Q+VK + SL+ ++GV+DGE+C+IAN+ PET+EE YA+VPSLKA RS
Sbjct: 160 NQFSTAQSVKQVLDSLTSIRSPLRKYGVSDGEMCLIANVGPETIEEVYALVPSLKATRSL 219
Query: 208 LNDLLKEVLIQLAKFKS 224
+ E L LA K+
Sbjct: 220 NESPIMEALTALADIKA 236
>gi|219888911|gb|ACL54830.1| unknown [Zea mays]
Length = 115
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/112 (57%), Positives = 79/112 (70%)
Query: 113 LMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSE 172
LM+CEAA +L+ I E MA+LS DP IKIP SFDK Y+K +HFT +VK + L +
Sbjct: 2 LMNCEAAELLQEIHEHMAILSEDPKIKIPESFDKAFQYSKDGNHFTTASSVKQAIEPLKK 61
Query: 173 HGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDLLKEVLIQLAKFKS 224
GV+DGEIC+IANI PETVEE YA+VPSLKA RS + + EVL LA K+
Sbjct: 62 CGVSDGEICMIANIGPETVEEVYALVPSLKANRSAIEGSVTEVLTALANIKA 113
>gi|297599854|ref|NP_001047971.2| Os02g0723300 [Oryza sativa Japonica Group]
gi|255671217|dbj|BAF09885.2| Os02g0723300, partial [Oryza sativa Japonica Group]
Length = 128
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 81/120 (67%)
Query: 105 ELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVK 164
++P N+ LM+CE A +L+ I E MA+LS DP IKIP SFDK Y K + F+ Q+VK
Sbjct: 7 DMPPNSCILMNCEVAELLQEIHEHMAILSEDPKIKIPESFDKAFQYVKEGNQFSTAQSVK 66
Query: 165 GLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDLLKEVLIQLAKFKS 224
+ L ++GV+DGE+C+IAN+ PET+EE YA+VPSLKA RS + E L LA K+
Sbjct: 67 QVLDPLRKYGVSDGEMCLIANVGPETIEEVYALVPSLKATRSLNESPIMEALTALADIKA 126
>gi|28188685|gb|AAN46268.1| unknown protein [Arabidopsis thaliana]
gi|28188693|gb|AAN46272.1| unknown protein [Arabidopsis thaliana]
Length = 142
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 93/156 (59%), Gaps = 21/156 (13%)
Query: 28 GGKDDNSAKSKRGRK-VQFNTEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGDKVANG 86
GGKD +S K K+G + +S + F S + KGGKGDK
Sbjct: 7 GGKDGSSTKLKKGTPPANYKILNVSSDQQPFQSSA-------------AKGGKGDKPTKS 53
Query: 87 AKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDK 146
+K S+ EL+ +LP+NA+C+MDCEA IL+GI+ Q+ LS DP+IKIPVS+D+
Sbjct: 54 SKNSLHS----FELK---DLPENAECMMDCEAFQILDGIKGQLVGLSEDPSIKIPVSYDR 106
Query: 147 GLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICV 182
L Y ++ H+TNPQ+V+ + + L +G++DGE+CV
Sbjct: 107 ALAYVESCVHYTNPQSVRKVLEPLKTYGISDGEMCV 142
>gi|28188691|gb|AAN46271.1| unknown protein [Arabidopsis thaliana]
gi|28188695|gb|AAN46273.1| unknown protein [Arabidopsis thaliana]
Length = 142
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 93/156 (59%), Gaps = 21/156 (13%)
Query: 28 GGKDDNSAKSKRGRK-VQFNTEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGDKVANG 86
GGKD +S K K+G + +S + F S + KGGKGDK
Sbjct: 7 GGKDGSSTKLKKGTPPANYKILNVSSDQQPFQSSA-------------AKGGKGDKPTKS 53
Query: 87 AKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDK 146
+K S+ EL+ +LP+NA+C+MDCEA IL+GI+ Q+ LS DP+IKIPVS+D+
Sbjct: 54 SKNSLHS----FELK---DLPENAECMMDCEAFQILDGIKGQLVGLSEDPSIKIPVSYDR 106
Query: 147 GLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICV 182
L Y ++ H+TNPQ+V+ + + L +G++DGE+CV
Sbjct: 107 SLAYVESCVHYTNPQSVRKVLEPLKTYGISDGEMCV 142
>gi|28188681|gb|AAN46266.1| unknown protein [Arabidopsis thaliana]
Length = 142
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 93/155 (60%), Gaps = 19/155 (12%)
Query: 28 GGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGDKVANGA 87
GGKD +S K K+G + K S F+++ KGGKGDK +
Sbjct: 7 GGKDGSSTKLKKGTPP-------ANYKILNGSSDQQPFQSS-----AAKGGKGDKPTKSS 54
Query: 88 KVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKG 147
K S+ EL+ +LP+NA+C+MDCEA IL+GI+ Q+ LS DP+IKIPVS+D+
Sbjct: 55 KNSLHS----FELK---DLPENAECMMDCEAFQILDGIKGQLVGLSEDPSIKIPVSYDRA 107
Query: 148 LLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICV 182
L Y ++ H+TNPQ+V+ + + L +G++DGE+CV
Sbjct: 108 LAYVESCVHYTNPQSVRKVLEPLKTYGISDGEMCV 142
>gi|28188699|gb|AAN46275.1| unknown protein [Arabidopsis thaliana]
Length = 142
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 93/155 (60%), Gaps = 19/155 (12%)
Query: 28 GGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGDKVANGA 87
GGKD +S K K+G + K S F+++ KGGKGDK +
Sbjct: 7 GGKDGSSTKLKKGTPP-------ANYKILSGSSDQQPFQSS-----AAKGGKGDKPTKSS 54
Query: 88 KVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKG 147
K S+ EL+ +LP+NA+C+MDCEA IL+GI+ Q+ LS DP+IKIPVS+D+
Sbjct: 55 KNSLHS----FELK---DLPENAECMMDCEAFQILDGIKGQLVGLSEDPSIKIPVSYDRA 107
Query: 148 LLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICV 182
L Y ++ H+TNPQ+V+ + + L +G++DGE+CV
Sbjct: 108 LAYVESCVHYTNPQSVRKVLEPLKTYGISDGEMCV 142
>gi|28188687|gb|AAN46269.1| unknown protein [Arabidopsis thaliana]
gi|28188689|gb|AAN46270.1| unknown protein [Arabidopsis thaliana]
gi|28188697|gb|AAN46274.1| unknown protein [Arabidopsis thaliana]
gi|28188701|gb|AAN46276.1| unknown protein [Arabidopsis thaliana]
Length = 142
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 93/155 (60%), Gaps = 19/155 (12%)
Query: 28 GGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGDKVANGA 87
GGKD +S K K+G + K S F+++ KGGKGDK +
Sbjct: 7 GGKDGSSTKLKKGTPP-------ANYKILNGSSDQQPFQSS-----AAKGGKGDKPTKSS 54
Query: 88 KVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKG 147
K S+ EL+ +LP+NA+C+MDCEA IL+GI+ Q+ LS DP+IKIPVS+D+
Sbjct: 55 KNSLHS----FELK---DLPENAECMMDCEAFQILDGIKGQLVGLSEDPSIKIPVSYDRA 107
Query: 148 LLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICV 182
L Y ++ H+TNPQ+V+ + + L +G++DGE+CV
Sbjct: 108 LAYVESCVHYTNPQSVRKVLEPLKTYGISDGEMCV 142
>gi|28188703|gb|AAN46277.1| unknown protein [Arabidopsis lyrata]
gi|28188705|gb|AAN46278.1| unknown protein [Arabidopsis lyrata]
Length = 142
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 89/156 (57%), Gaps = 21/156 (13%)
Query: 28 GGKDDNSAKSKRGRKV-QFNTEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGDKVANG 86
GGKD NS K K+G + S F S + +K GKGDK
Sbjct: 7 GGKDGNSTKLKKGTPPPNYKILNGSSDPLPFQSSA-------------SKVGKGDKPTKS 53
Query: 87 AKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDK 146
+K S+ EL+ +LP+NA+C+MDCEA IL+GI+ + LS DP+IKIPVS+D+
Sbjct: 54 SKNSLQS----FELK---DLPENAECMMDCEAFQILDGIKGHLVGLSEDPSIKIPVSYDR 106
Query: 147 GLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICV 182
L Y + H++NPQ+V+ + + L HGV+DGE+CV
Sbjct: 107 ALAYVDSCVHYSNPQSVRKVLEPLKTHGVSDGEMCV 142
>gi|356558007|ref|XP_003547301.1| PREDICTED: uncharacterized protein LOC100775535 [Glycine max]
Length = 174
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 119/229 (51%), Gaps = 60/229 (26%)
Query: 1 MEKGGGGKG----GGVGGGGKTSLKSIPASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFT 56
MEKGG G GG+G S GKDD++ KS + R VQF+++G S
Sbjct: 1 MEKGGKGASLFSKGGLG------------SQKGKDDSATKSAKKRMVQFSSDGPSFESGV 48
Query: 57 FSSKSDGKFETTYGKGGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDC 116
SS + + KGGKGD VANG K S K++ + RV+Q+LP+N KCL+DC
Sbjct: 49 SSS-------SLPSQKSGGKGGKGDNVANGGKSSQSKDSHSSDHRVDQKLPENIKCLIDC 101
Query: 117 EAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVT 176
EA IL+GIQE+M L++ G+T
Sbjct: 102 EAVDILQGIQERM-------------------------------------ISPLAKCGLT 124
Query: 177 DGEICVIANICPETVEEAYAIVPSLKAKRSRLNDLLKEVLIQLAKFKST 225
D EICVI N+CPET++E +A++PSLK KR+ +LK+ L QLAKF+ +
Sbjct: 125 DSEICVIGNVCPETIDEVFALLPSLKDKRNIDRQVLKDSLSQLAKFRQS 173
>gi|28188683|gb|AAN46267.1| unknown protein [Arabidopsis thaliana]
Length = 142
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 91/156 (58%), Gaps = 21/156 (13%)
Query: 28 GGKDDNSAKSKRGRK-VQFNTEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGDKVANG 86
GGKD +S K K+G + +S + F S + K GK DK
Sbjct: 7 GGKDGSSTKLKKGTPPANYKILNVSSDQQPFQSSA-------------AKCGKSDKPTKS 53
Query: 87 AKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDK 146
+K S+ EL+ +LP+NA+C+MDCEA IL+GI+ Q+ LS DP+IKIPVS+D+
Sbjct: 54 SKNSLHS----FELK---DLPENAECMMDCEAFQILDGIKGQLVGLSEDPSIKIPVSYDR 106
Query: 147 GLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICV 182
L Y ++ H+TNPQ+V+ + + L +G++DGE+CV
Sbjct: 107 ALAYVESCVHYTNPQSVRKVLEPLKTYGISDGEMCV 142
>gi|217426791|gb|ACK44499.1| AT5G09920-like protein [Arabidopsis arenosa]
Length = 321
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 86/162 (53%), Gaps = 18/162 (11%)
Query: 49 GLSEGKFTF------SSKSDGKFETTYGKGGLTKGGKGDKVANGAKVSVVKEALPLELRV 102
G E FTF +++ K + L G++ N A++ + E L
Sbjct: 113 GREEAIFTFVVSRKKKPEAEQKRTFRFRFPSLVIAMSGEEEENAAELKIGDEFL------ 166
Query: 103 EQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQA 162
AKCLM+CE + ILE EQ+ +S DP ++ F+K L Y K S + NP A
Sbjct: 167 ------KAKCLMNCEVSLILEHKFEQLQQVSEDPMNQVSQVFEKSLQYVKRFSRYKNPDA 220
Query: 163 VKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
V+ + + LS H +T+ E+CV+ N+CPETVEEA A+VPSLK +
Sbjct: 221 VRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLKWR 262
>gi|15242547|ref|NP_196554.1| DNA-directed RNA polymerase II subunit D [Arabidopsis thaliana]
gi|2760362|gb|AAB95261.1| 15.9 kDa subunit of RNA polymerase II [Arabidopsis thaliana]
gi|9758970|dbj|BAB09413.1| 15.9 kDa subunit of RNA polymerase II [Arabidopsis thaliana]
gi|21554212|gb|AAM63291.1| 15.9 kDa subunit of RNA polymerase II [Arabidopsis thaliana]
gi|98960869|gb|ABF58918.1| At5g09920 [Arabidopsis thaliana]
gi|222423668|dbj|BAH19801.1| AT5G09920 [Arabidopsis thaliana]
gi|332004084|gb|AED91467.1| DNA-directed RNA polymerase II subunit D [Arabidopsis thaliana]
Length = 138
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 71/106 (66%), Gaps = 1/106 (0%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE + ILE EQ+ +S DP ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
NP AV+ + + LS H +T+ E+CV+ N+CPETVEEA A+VPSLK K
Sbjct: 70 NPDAVRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLKTK 115
>gi|297807017|ref|XP_002871392.1| RPB15.9 [Arabidopsis lyrata subsp. lyrata]
gi|297317229|gb|EFH47651.1| RPB15.9 [Arabidopsis lyrata subsp. lyrata]
Length = 138
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 71/106 (66%), Gaps = 1/106 (0%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE + ILE EQ+ +S DP ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILEHKFEQLQQVSEDPMNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
NP AV+ + + LS H +T+ E+CV+ N+CPETVEEA A+VPSLK K
Sbjct: 70 NPDAVRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLKTK 115
>gi|449441240|ref|XP_004138390.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Cucumis sativus]
gi|449526195|ref|XP_004170099.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Cucumis sativus]
Length = 138
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 75/112 (66%), Gaps = 2/112 (1%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE + ILE EQ+ +S DPT ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLND 210
NP AV+ + + LS + + + E+CV+ N+CPETVEEA A+VPSLK K R++D
Sbjct: 70 NPDAVRQVREVLSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTK-GRVHD 120
>gi|255562011|ref|XP_002522014.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
gi|223538818|gb|EEF40418.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
Length = 138
Score = 102 bits (255), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 82/126 (65%), Gaps = 2/126 (1%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE A ILE EQ+ +S DP ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVALILEHKYEQLQQMSNDPMNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK-RSRLNDLLKEVLI 217
NP AV+ + + LS + + + E+CV+ N+CPETVEEA A+VPS+K K R+ ++ ++++L
Sbjct: 70 NPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHDDEAIEKMLT 129
Query: 218 QLAKFK 223
L+ K
Sbjct: 130 DLSMIK 135
>gi|51970310|dbj|BAD43847.1| unnamed protein product [Arabidopsis thaliana]
Length = 158
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 96/158 (60%), Gaps = 18/158 (11%)
Query: 13 GGGGKTSLKSIPASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGK--FETTYG 70
G G K+SLKS GGKD +S K K+GRK+ F+ +G + + S + F+++
Sbjct: 6 GKGLKSSLKS---KDGGKDGSSTKLKKGRKIHFD-QGTPPANYKILNVSSDQQPFQSS-- 59
Query: 71 KGGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMA 130
K GK DK +K S+ EL+ +LP+NA+C+MDCEA IL+GI+ Q+
Sbjct: 60 ---AAKCGKSDKPTKSSKNSLHS----FELK---DLPENAECMMDCEAFQILDGIKGQLV 109
Query: 131 LLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQ 168
LS DP+IKIPVS+D+ L Y ++ H+TNPQ+V+ + +
Sbjct: 110 GLSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLE 147
>gi|51971721|dbj|BAD44525.1| unnamed protein product [Arabidopsis thaliana]
Length = 155
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 96/158 (60%), Gaps = 18/158 (11%)
Query: 13 GGGGKTSLKSIPASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGK--FETTYG 70
G G K+SLKS GGKD +S K K+GRK+ F+ +G + + S + F+++
Sbjct: 3 GKGLKSSLKS---KDGGKDGSSTKLKKGRKIHFD-QGTPPANYKILNVSSDQQPFQSS-- 56
Query: 71 KGGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMA 130
K GK DK +K S+ EL+ +LP+NA+C+MDCEA IL+GI+ Q+
Sbjct: 57 ---AAKCGKSDKPTKSSKNSLHS----FELK---DLPENAECMMDCEAFQILDGIKGQLV 106
Query: 131 LLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQ 168
LS DP+IKIPVS+D+ L Y ++ H+TNPQ+V+ + +
Sbjct: 107 GLSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLE 144
>gi|192910802|gb|ACF06509.1| RNA polymerase II 15.9 kDa subunit [Elaeis guineensis]
Length = 138
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 83/126 (65%), Gaps = 2/126 (1%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ +E K AKCLM+CE A IL+ EQ+ LS DPT +I F+K + Y K S +
Sbjct: 11 ELKIGEEFLK-AKCLMNCEVALILDRKYEQLQQLSDDPTNQISQVFEKSMQYVKRFSRYK 69
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK-RSRLNDLLKEVLI 217
N AV+ + + LS + + + E+CV+ N+CPETVEEA A+VPS+K+K R +D ++++L
Sbjct: 70 NQDAVRQVREILSRYRLAEFELCVLGNLCPETVEEAIAMVPSIKSKGRIHEDDAIEKMLN 129
Query: 218 QLAKFK 223
L+ K
Sbjct: 130 DLSLIK 135
>gi|449482280|ref|XP_004156236.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Cucumis sativus]
Length = 139
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 82/127 (64%), Gaps = 2/127 (1%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE + ILE EQ+ + DPT ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK-RSRLNDLLKEVLI 217
NP AV+ + + LS + + + E+CV+ N+CPETVEEA +IVPSLK K R ++ ++++L
Sbjct: 70 NPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEATSIVPSLKTKGRVHEDEAIEKMLN 129
Query: 218 QLAKFKS 224
L+ KS
Sbjct: 130 DLSLIKS 136
>gi|146403790|gb|ABQ32301.1| putative 15.9 kDa subunit of RNA polymerase II [Artemisia annua]
Length = 138
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 72/106 (67%), Gaps = 1/106 (0%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE + IL+ EQ+ +S DP+ ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILDHKLEQLQAMSDDPSNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
NP AV+ + + LS H + + E+CV+ N+CPETVEEA A+VPS+K++
Sbjct: 70 NPDAVRQVRELLSRHQLAEFELCVLGNLCPETVEEAIAMVPSIKSR 115
>gi|225446712|ref|XP_002282413.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Vitis
vinifera]
gi|147856183|emb|CAN80281.1| hypothetical protein VITISV_017448 [Vitis vinifera]
gi|302143481|emb|CBI22042.3| unnamed protein product [Vitis vinifera]
Length = 138
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 82/126 (65%), Gaps = 2/126 (1%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE A ILE EQ+ +S DP ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVAVILEHKYEQLQQMSDDPLNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK-RSRLNDLLKEVLI 217
NP AV+ + + LS + + + E+CV+ N+CPETVEEA A+VPS+K K R+ ++ ++++L
Sbjct: 70 NPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHDDEAIEKMLN 129
Query: 218 QLAKFK 223
L+ K
Sbjct: 130 DLSLIK 135
>gi|224083811|ref|XP_002307132.1| predicted protein [Populus trichocarpa]
gi|224096326|ref|XP_002310604.1| predicted protein [Populus trichocarpa]
gi|222853507|gb|EEE91054.1| predicted protein [Populus trichocarpa]
gi|222856581|gb|EEE94128.1| predicted protein [Populus trichocarpa]
Length = 138
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 76/115 (66%), Gaps = 1/115 (0%)
Query: 110 AKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQS 169
AKCLM+CE A ILE EQ+ +S DP ++ F+K L Y K S + NP AV+ + +
Sbjct: 21 AKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREI 80
Query: 170 LSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK-RSRLNDLLKEVLIQLAKFK 223
LS + + + E+CV+ N+CPETVEEA A+VPS+K K R+ ++ ++++L L+ K
Sbjct: 81 LSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHDDEAIEKMLNDLSLIK 135
>gi|449447482|ref|XP_004141497.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Cucumis sativus]
Length = 138
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE + ILE EQ+ + DPT ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
NP AV+ + + LS + + + E+CV+ N+CPETVEEA +IVPSLK K
Sbjct: 70 NPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEATSIVPSLKTK 115
>gi|351724197|ref|NP_001238073.1| uncharacterized protein LOC100527316 [Glycine max]
gi|255632071|gb|ACU16388.1| unknown [Glycine max]
Length = 138
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 83/126 (65%), Gaps = 2/126 (1%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE + ILE EQ+ S DP ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILEHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK-RSRLNDLLKEVLI 217
NP AV+ + + L+ + + + E+CV+ N+CPETVEEA A+VPS+K++ R++ ++ ++++L
Sbjct: 70 NPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAVVPSIKSRGRAQDDEAIEKMLN 129
Query: 218 QLAKFK 223
L+ K
Sbjct: 130 DLSLIK 135
>gi|351727683|ref|NP_001237937.1| uncharacterized protein LOC100499661 [Glycine max]
gi|255625623|gb|ACU13156.1| unknown [Glycine max]
Length = 138
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 83/126 (65%), Gaps = 2/126 (1%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE + ILE EQ+ S DP +I F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILEHKYEQLQQTSDDPMNQISQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK-RSRLNDLLKEVLI 217
NP AV+ + + L+ + + + E+CV+ N+CPETVEEA A+VPS+K++ R++ ++ ++++L
Sbjct: 70 NPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKSRGRAQDDEAIEKMLN 129
Query: 218 QLAKFK 223
L+ K
Sbjct: 130 DLSLIK 135
>gi|351722549|ref|NP_001236224.1| uncharacterized protein LOC100527704 [Glycine max]
gi|255632992|gb|ACU16850.1| unknown [Glycine max]
Length = 195
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 84/127 (66%), Gaps = 2/127 (1%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE A ILE EQ+ S DP ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVALILEHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK-RSRLNDLLKEVLI 217
NP AV+ + + L+ + + + E+CV+ N+CPETVEEA A+VPS+K++ R++ ++ ++++L
Sbjct: 70 NPDAVRQVREILARYELAEFELCVLGNLCPETVEEAIAMVPSIKSRGRAQDDEAIEKMLN 129
Query: 218 QLAKFKS 224
L+ K+
Sbjct: 130 DLSLIKN 136
>gi|388495724|gb|AFK35928.1| unknown [Lotus japonicus]
Length = 138
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 82/126 (65%), Gaps = 2/126 (1%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE + ILE EQ+ S DP ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILEHKYEQLQQSSDDPMNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK-RSRLNDLLKEVLI 217
NP AV+ + + L+ + + + E+CV+ N+CPETVEEA A+VPS+K + R++ ++ ++++L
Sbjct: 70 NPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAQDDEAIEKMLN 129
Query: 218 QLAKFK 223
L+ K
Sbjct: 130 DLSLIK 135
>gi|168028875|ref|XP_001766952.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681694|gb|EDQ68118.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 142
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 68/101 (67%), Gaps = 1/101 (0%)
Query: 110 AKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQS 169
AKCLM+ E A +L+ EQ+ L+ DP+ +I F++ L Y + S + NP AVK + +
Sbjct: 26 AKCLMNAEVALVLQRKYEQLQQLADDPSSQISQVFERSLQYVRRFSRYQNPDAVKQVREV 85
Query: 170 LSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLND 210
L+ + + + E+CVI N+CPETVEEA A+VPS+ KR R+++
Sbjct: 86 LTRNQLHEFEVCVIGNLCPETVEEAKALVPSI-TKRGRMDE 125
>gi|115443807|ref|NP_001045683.1| Os02g0116900 [Oryza sativa Japonica Group]
gi|41052832|dbj|BAD07723.1| putative 15.9 kDa subunit of RNA polymerase II [Oryza sativa
Japonica Group]
gi|113535214|dbj|BAF07597.1| Os02g0116900 [Oryza sativa Japonica Group]
gi|125537811|gb|EAY84206.1| hypothetical protein OsI_05586 [Oryza sativa Indica Group]
gi|125580570|gb|EAZ21501.1| hypothetical protein OsJ_05124 [Oryza sativa Japonica Group]
gi|215768240|dbj|BAH00469.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 142
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 72/106 (67%), Gaps = 2/106 (1%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLS-ADPTIKIPVSFDKGLLYAKTHSHF 157
EL++ +E K AKCLM+CE A ILE EQ+ +S DP+ ++ F+K L Y K S +
Sbjct: 11 ELKIGEEFLK-AKCLMNCEVAIILEHKYEQIQHMSDGDPSSQVSQVFEKSLQYVKRFSRY 69
Query: 158 TNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKA 203
NP AV+ + ++LS +G+ + E+C + N+CP+T +EA A+VPSL++
Sbjct: 70 KNPDAVRQVRETLSRYGLAEFELCTLGNLCPDTSDEASALVPSLRS 115
>gi|302768831|ref|XP_002967835.1| hypothetical protein SELMODRAFT_144908 [Selaginella moellendorffii]
gi|302799846|ref|XP_002981681.1| hypothetical protein SELMODRAFT_115080 [Selaginella moellendorffii]
gi|300150513|gb|EFJ17163.1| hypothetical protein SELMODRAFT_115080 [Selaginella moellendorffii]
gi|300164573|gb|EFJ31182.1| hypothetical protein SELMODRAFT_144908 [Selaginella moellendorffii]
Length = 136
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 76/115 (66%), Gaps = 2/115 (1%)
Query: 111 KCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSL 170
KCLM+ E A IL+ + +S DP+ ++ F+K Y K S + NP+AV+ + + L
Sbjct: 21 KCLMNAEVAKILQHKYDTANQMSDDPSSQLSQVFEKSFAYVKRFSRYKNPEAVQQVREVL 80
Query: 171 SEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLND-LLKEVLIQLAKFKS 224
S + + + E+CV+ N+CPETVEEA A+VPS+ AK+ RL+D ++++L LA+ K+
Sbjct: 81 SRNQLAEFEVCVLGNLCPETVEEATALVPSI-AKKGRLDDERIEQMLADLARIKT 134
>gi|357513237|ref|XP_003626907.1| DNA-directed RNA polymerase II subunit RPB4 [Medicago truncatula]
gi|355520929|gb|AET01383.1| DNA-directed RNA polymerase II subunit RPB4 [Medicago truncatula]
gi|388497296|gb|AFK36714.1| unknown [Medicago truncatula]
Length = 138
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 81/126 (64%), Gaps = 2/126 (1%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE + ILE EQ+ S D ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILEHKYEQLQQSSDDAMNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK-RSRLNDLLKEVLI 217
NP AV+ + + L+ + + + E+CV+ N+CPETVEEA A+VPS+K + R++ ++ ++++L
Sbjct: 70 NPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAQDDEAIEKMLN 129
Query: 218 QLAKFK 223
L+ K
Sbjct: 130 DLSLIK 135
>gi|242063790|ref|XP_002453184.1| hypothetical protein SORBIDRAFT_04g001250 [Sorghum bicolor]
gi|241933015|gb|EES06160.1| hypothetical protein SORBIDRAFT_04g001250 [Sorghum bicolor]
Length = 143
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 71/107 (66%), Gaps = 3/107 (2%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSA--DPTIKIPVSFDKGLLYAKTHSH 156
EL++ +E K AKCLM+CE A ILE EQ+ S+ DP+ ++ F+K L Y K S
Sbjct: 11 ELKIGEEFLK-AKCLMNCEVAIILEHKYEQIQQHSSESDPSSQVSQVFEKSLQYVKRFSR 69
Query: 157 FTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKA 203
+ NP AV+ + ++LS +G+ + E+C + N+CP+T EA A+VPSLK+
Sbjct: 70 YKNPDAVRQVRETLSRYGLAEFELCTLGNLCPDTSGEATALVPSLKS 116
>gi|301298709|gb|ADK66819.1| putative RNA polymerase II subunit [Saccharum hybrid cultivar
SP80-3280]
Length = 143
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 71/107 (66%), Gaps = 3/107 (2%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSA--DPTIKIPVSFDKGLLYAKTHSH 156
EL++ +E K AKCLM+CE A ILE EQ+ S+ DP+ ++ F+K L Y K S
Sbjct: 11 ELKIGEEFLK-AKCLMNCEVAIILEHKYEQILQHSSESDPSSQVSQVFEKSLQYVKRFSR 69
Query: 157 FTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKA 203
+ NP AV+ + ++LS +G+ + E+C + N+CP+T EA A+VPSLK+
Sbjct: 70 YKNPDAVRQVRETLSRYGLAEFELCTLGNLCPDTSGEATALVPSLKS 116
>gi|226497040|ref|NP_001148722.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Zea mays]
gi|226958433|ref|NP_001152952.1| LOC100285981 [Zea mays]
gi|195607822|gb|ACG25741.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Zea mays]
gi|195621652|gb|ACG32656.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Zea mays]
gi|195655327|gb|ACG47131.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Zea mays]
gi|223946753|gb|ACN27460.1| unknown [Zea mays]
gi|413926837|gb|AFW66769.1| DNA-directed RNA polymerase II polypeptide [Zea mays]
Length = 144
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 4/108 (3%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQM---ALLSADPTIKIPVSFDKGLLYAKTHS 155
EL++ +E K AKCLM+CE A ILE EQ+ A +DP+ ++ F+K L Y K S
Sbjct: 11 ELKIGEEFLK-AKCLMNCEVAIILEHKYEQIQQHASSESDPSSQVSQVFEKSLQYVKRFS 69
Query: 156 HFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKA 203
+ NP AV+ + ++LS +G+ + E+C + N+CP+T EA A+VPSLK+
Sbjct: 70 RYKNPDAVRQVRETLSRYGLAEFELCTLGNLCPDTSGEATALVPSLKS 117
>gi|357144504|ref|XP_003573316.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Brachypodium distachyon]
Length = 141
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLS---ADPTIKIPVSFDKGLLYAKTHS 155
EL++ +E K AK LM+CE A ILE EQ+ +S DP+ ++ F+K L Y K S
Sbjct: 11 ELKIGEEFLK-AKSLMNCEVAIILEHRYEQLQQMSDGGGDPSSQMSQVFEKSLGYVKRFS 69
Query: 156 HFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSL 201
+ NP AV+ + ++LS +G+ + E+C + N+CP+T +EA A+VPSL
Sbjct: 70 RYKNPDAVRQVRETLSRYGLHEFELCTLGNLCPDTADEAKALVPSL 115
>gi|357513239|ref|XP_003626908.1| DNA-directed RNA polymerase II subunit RPB4 [Medicago truncatula]
gi|355520930|gb|AET01384.1| DNA-directed RNA polymerase II subunit RPB4 [Medicago truncatula]
Length = 114
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 114 MDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEH 173
M+CE + ILE EQ+ S D ++ F+K L Y K S + NP AV+ + + L+ +
Sbjct: 1 MNCEVSLILEHKYEQLQQSSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILARY 60
Query: 174 GVTDGEICVIANICPETVEEAYAIVPSLKAK-RSRLNDLLKEVLIQLAKFK 223
+ + E+CV+ N+CPETVEEA A+VPS+K + R++ ++ ++++L L+ K
Sbjct: 61 QLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAQDDEAIEKMLNDLSLIK 111
>gi|356525584|ref|XP_003531404.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB4-like [Glycine max]
Length = 136
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 83/136 (61%), Gaps = 4/136 (2%)
Query: 89 VSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGL 148
+ V KE EL++ E K AKCLM+CE A I E Q+ +S DP ++ F+K
Sbjct: 1 MYVEKEENAAELKIGDEFLK-AKCLMNCEVALIPEHKYXQLQQISDDPMNQVSQVFEKSQ 59
Query: 149 LYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK-RSR 207
Y K S + NP AV+ + L+ + + + E+CV+ N+C ETVEEA A+VPS++++ R++
Sbjct: 60 QYVKRFSRYKNPDAVRD--KILARYQLAEFELCVLGNLCLETVEEAIAMVPSIESRGRAQ 117
Query: 208 LNDLLKEVLIQLAKFK 223
++ ++++L L+ K
Sbjct: 118 DDEAIEKMLNDLSLIK 133
>gi|72255603|gb|AAZ66921.1| 117M18_2 [Brassica rapa]
Length = 329
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 65/117 (55%), Gaps = 27/117 (23%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADP-----TIKIPVS-------FDK 146
EL++ E K AKCLM+CE + ILE EQ+ +S DP T+K+ + F+K
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILEHKYEQLQQVSEDPMNQRFTVKLAIKRYRSCWVFEK 69
Query: 147 GLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKA 203
L Y K S + NP AV+ ++CV+ N+CPET EEA A+VPSLK+
Sbjct: 70 SLQYVKRFSRYKNPDAVR--------------QLCVLGNLCPETAEEAVAMVPSLKS 112
>gi|440804477|gb|ELR25354.1| DNAdirected RNA polymerase II subunit rpb4, putative [Acanthamoeba
castellanii str. Neff]
Length = 135
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 67/116 (57%), Gaps = 3/116 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA CL++ E A +LE Q Q A + + ++ F K L Y + S + AVK +
Sbjct: 20 QNANCLLNSEVAILLEHRQ-QTAAVQEEGEAELSNVFLKTLSYVQRFSRYKTKAAVKEVR 78
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDLLKEVLIQLAKFK 223
L+E + + EI ++N+CPET EEA +++PSL AKR ++ L+ VL LA F+
Sbjct: 79 SLLTEKELEEFEIAALSNLCPETAEEAKSLIPSL-AKRFD-DEELQSVLNDLASFR 132
>gi|281202108|gb|EFA76313.1| RNA polymerase II core subunit [Polysphondylium pallidum PN500]
Length = 747
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 5/133 (3%)
Query: 91 VVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLY 150
V++E L L + KNAK L++ E A +LE +E A + P +F K L Y
Sbjct: 617 VIQEEEDLSLLKFPKDLKNAKFLLNSEVAILLECRKE-----FATEGTEFPQTFHKTLAY 671
Query: 151 AKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLND 210
A+ S + N ++K + LS+ + + E+ +AN+CPE +EA +++ SLK + +D
Sbjct: 672 AERFSRYKNKASIKQVRGVLSKQDLDEFEVACLANLCPENSDEAKSLIVSLKRFQDTQDD 731
Query: 211 LLKEVLIQLAKFK 223
L+ +L +L+ +
Sbjct: 732 TLQAILDELSNLR 744
>gi|395331653|gb|EJF64033.1| RNA polymerase II [Dichomitus squalens LYAD-421 SS1]
Length = 134
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 64/118 (54%), Gaps = 10/118 (8%)
Query: 109 NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQ 168
NA CL+ E ++LE + A + D + ++K L Y KT + F P+A + +
Sbjct: 25 NAGCLLISEVRYLLEHRPSEKA--APDTAV-----YNKTLEYVKTFAKFDKPEAAAAIRE 77
Query: 169 SLS-EHGVTDGEICVIANICPETVEEAYAIVPSL-KAKRSRLNDLLKEVLIQLAKFKS 224
+L E +T EI IAN+CP T EEA +IVPSL K +L LL E+ + KF+S
Sbjct: 78 TLRRESALTQFEIAQIANLCPVTAEEAKSIVPSLVKIDDDKLQPLLDEIQT-MRKFQS 134
>gi|330790380|ref|XP_003283275.1| RNA polymerase II core subunit [Dictyostelium purpureum]
gi|325086822|gb|EGC40206.1| RNA polymerase II core subunit [Dictyostelium purpureum]
Length = 138
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 66/116 (56%), Gaps = 7/116 (6%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
K+AK L++ E A +LE L S + ++ +F K L YA+ S + N ++K +
Sbjct: 27 KDAKFLLNSEVAILLE----HRKLGSENEGLEFTQTFHKTLAYAEKFSRYKNKTSIKQVR 82
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDLLKEVLIQLAKFK 223
+LS+ + + +I +AN+CPET +EA +++PSLK D L+ +L +L+ +
Sbjct: 83 AALSKQNLEEFQIASLANLCPETADEAKSLIPSLKEMDE---DALQAILDELSNLR 135
>gi|392565043|gb|EIW58220.1| RNA polymerase II [Trametes versicolor FP-101664 SS1]
Length = 134
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 10/118 (8%)
Query: 109 NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQ 168
NA CL+ E ++LE + A + D ++ + K L Y KT + F P+A + +
Sbjct: 25 NAGCLLISEVRYLLEHRPSEKA--APDTSV-----YKKTLEYVKTFAKFDKPEAAAAIRE 77
Query: 169 SLS-EHGVTDGEICVIANICPETVEEAYAIVPSL-KAKRSRLNDLLKEVLIQLAKFKS 224
+L E +T EI IAN+CP T EE+ +I+PSL K +L LL E+ + KF+S
Sbjct: 78 TLRRESDLTQFEIAQIANLCPVTAEESKSIIPSLVKVDDDKLQPLLDEIQT-MRKFQS 134
>gi|126320949|ref|XP_001366431.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
Length = 142
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 6/110 (5%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q S ++PV F K L YA S F N + + +
Sbjct: 27 ETAQTLLNSEVHMLLEHRKQQHE--SGQDARELPVVFWKTLDYAARFSRFQNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDL-LKEVL 216
L + + E+ +AN+CPET EEA A++PSL RL D L+EVL
Sbjct: 85 GLLLQKKLHKFEVAALANLCPETAEEAKALIPSLAG---RLEDEDLQEVL 131
>gi|126320937|ref|XP_001366148.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
Length = 142
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 6/110 (5%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q S ++PV F K L YA S F N + + +
Sbjct: 27 ETAQTLLNSEVHMLLEHRKQQHE--SGQDARELPVVFWKTLDYAARFSRFQNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDL-LKEVL 216
L + + E+ +AN+CPET EEA A++PSL RL D L+EVL
Sbjct: 85 GLLLQKKLHKFELAALANLCPETAEEAKALIPSLAG---RLEDEDLQEVL 131
>gi|66812112|ref|XP_640235.1| DNA-directed RNA polymerase II subunit 4 [Dictyostelium discoideum
AX4]
gi|74854885|sp|Q54S04.1|RPB4_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb4;
Short=RNA polymerase II subunit B4; AltName:
Full=DNA-directed RNA polymerase II subunit D
gi|60468219|gb|EAL66229.1| DNA-directed RNA polymerase II subunit 4 [Dictyostelium discoideum
AX4]
Length = 155
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 68/129 (52%), Gaps = 16/129 (12%)
Query: 108 KNAKCLMDCEAAHILE---GIQEQ----------MALLSADPTIKIPVSFDKGLLYAKTH 154
K+AK L++ E A +LE GI E + L + I +F K L YA+
Sbjct: 27 KDAKFLLNSEVAILLEHRKGISESEGTEFPQNTLLIHLYYNSINDIIRTFHKTLAYAEKF 86
Query: 155 SHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDLLKE 214
S + N ++K + +LS+ + + EI +AN+CPE +EA +++PSLK +D L+
Sbjct: 87 SRYKNKTSIKQVRTALSKQNLEEFEIASLANLCPEISDEAKSLIPSLKKME---DDELQA 143
Query: 215 VLIQLAKFK 223
+L +L+ +
Sbjct: 144 ILDELSNLR 152
>gi|126320947|ref|XP_001366375.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
gi|126320951|ref|XP_001366486.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
gi|126320955|ref|XP_001366545.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
gi|126320959|ref|XP_001366594.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
Length = 142
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 6/110 (5%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q S ++PV F K L YA S F N + + +
Sbjct: 27 ETAQTLLNSEVHMLLEHRKQQHE--SGQDARELPVVFWKTLDYAARFSRFQNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDL-LKEVL 216
L + + E+ +AN+CPET EEA A++PSL RL D L+EVL
Sbjct: 85 GLLLQKKLHKFELAALANLCPETAEEAKALIPSLAG---RLEDEDLQEVL 131
>gi|308503128|ref|XP_003113748.1| CRE-RPB-4 protein [Caenorhabditis remanei]
gi|308263707|gb|EFP07660.1| CRE-RPB-4 protein [Caenorhabditis remanei]
Length = 144
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 133 SADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVE 192
S D ++ F K L YA+ S F N + ++ + SE + E+ IAN+CPE E
Sbjct: 53 SKDEIEEMSEVFIKTLNYARRMSRFKNRETIRAVRAIFSEKHLHKFEVAQIANLCPENAE 112
Query: 193 EAYAIVPSL--KAKRSRLNDLLKEV 215
EA A+VPSL K + S L ++LK++
Sbjct: 113 EAKALVPSLENKIEESELEEVLKDL 137
>gi|193204561|ref|NP_495544.2| Protein RPB-4 [Caenorhabditis elegans]
gi|351021285|emb|CCD63552.1| Protein RPB-4 [Caenorhabditis elegans]
Length = 144
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 133 SADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVE 192
S D ++ F K L YA+ S F N + ++ + SE + E+ IAN+CPE E
Sbjct: 53 SKDEIEEMSEVFIKTLNYARRMSRFKNRETIRAVRAIFSEKHLHKFEVAQIANLCPENAE 112
Query: 193 EAYAIVPSL--KAKRSRLNDLLKEV 215
EA A+VPSL K + S L ++LK++
Sbjct: 113 EAKALVPSLENKIEESELEEVLKDL 137
>gi|328873268|gb|EGG21635.1| DNA-directed RNA polymerase II subunit 4 [Dictyostelium
fasciculatum]
Length = 138
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 57/101 (56%), Gaps = 7/101 (6%)
Query: 105 ELPKN---AKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQ 161
+ PK+ AK L++ E A LE +E ++ + P +F K L YA+ S + N
Sbjct: 21 QFPKDLQQAKFLLNSEVAIFLECRKE----FESENQTEFPQTFHKTLAYAERFSRYKNKT 76
Query: 162 AVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
++K + +LS+ + + EI +AN+CPE +EA +++ SLK
Sbjct: 77 SIKQVRAALSKQNLHEFEIASLANLCPENSDEAKSLIVSLK 117
>gi|126320933|ref|XP_001366024.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
gi|126320939|ref|XP_001366209.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
gi|126320945|ref|XP_001366315.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
Length = 142
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 6/110 (5%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q S ++PV F K L YA S F N + + +
Sbjct: 27 ETAQTLLNSEVHMLLEHRKQQHE--SGQDARELPVVFWKTLDYAARFSRFQNRETIARVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDL-LKEVL 216
L + + E+ +AN+CPET EEA A++PSL RL D L+EVL
Sbjct: 85 GLLLQKKLHKFELAALANLCPETAEEAKALIPSLAG---RLEDEDLQEVL 131
>gi|126320943|ref|XP_001366258.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
Length = 142
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 65/127 (51%), Gaps = 9/127 (7%)
Query: 91 VVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLY 150
V +EAL L E E A+ L++ E +LE ++Q S +PV F K L Y
Sbjct: 13 VEEEALQLVFPREFE---TAQTLLNSEVHMLLEHRKQQHE--SGQDARGLPVVFWKTLDY 67
Query: 151 AKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLND 210
A S F N + + + L + + E+ +AN+CPET EEA A++PSL RL D
Sbjct: 68 AARFSRFQNRETIASVRGLLLQKKLHKFELAALANLCPETAEEAKALIPSLAG---RLED 124
Query: 211 L-LKEVL 216
L+EVL
Sbjct: 125 EDLQEVL 131
>gi|268562714|ref|XP_002646754.1| C. briggsae CBR-RPB-4 protein [Caenorhabditis briggsae]
Length = 148
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 144 FDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSL-- 201
F K L YA+ S F N + ++ + SE + E+ IAN+CPE EEA A+VPSL
Sbjct: 68 FIKTLNYARRMSRFKNRETIRAVRAIFSEKHLHKFEVAQIANLCPENAEEAKALVPSLEN 127
Query: 202 KAKRSRLNDLLKEV 215
K + S L ++LK++
Sbjct: 128 KIEESELEEVLKDL 141
>gi|388502530|gb|AFK39331.1| unknown [Lotus japonicus]
Length = 83
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE + ILE EQ+ S DP ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILEHKYEQLQQSSDDPMNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGL 166
NP AV+ +
Sbjct: 70 NPDAVRQV 77
>gi|358339513|dbj|GAA47564.1| DNA-directed RNA polymerase II subunit RPB4 [Clonorchis sinensis]
Length = 140
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 5/120 (4%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL+ +E +NA LM E +LE +EQ + +++ +F K L YA S F
Sbjct: 15 ELKFPKEF-ENADTLMLSEVKLLLEHRKEQNESATVHE-LELSQAFTKTLNYATQLSRFN 72
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKR---SRLNDLLKEV 215
N + ++ + LS+ E+ IAN+ P+T EEA A++PSL + R L LL E+
Sbjct: 73 NRETIESVRSLLSQKRFHGFELAAIANLLPDTAEEAKALIPSLDSSRFTDEELQQLLDEI 132
>gi|126320935|ref|XP_001366087.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
Length = 142
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 59/113 (52%), Gaps = 12/113 (10%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQ---AVK 164
+ A+ L++ E +LE ++Q S ++PV F K L YA S F N + +V+
Sbjct: 27 ETAQTLLNSEVHMLLEHRKQQHE--SGQDARELPVVFWKTLDYAARFSRFQNRETIASVR 84
Query: 165 GLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDL-LKEVL 216
GL H + +AN+CPET EEA A++PSL RL D L+EVL
Sbjct: 85 GLLLQKKLHKFV---LAALANLCPETAEEAKALIPSLAG---RLEDEDLQEVL 131
>gi|427786429|gb|JAA58666.1| Putative dna-directed rna polymerase ii [Rhipicephalus pulchellus]
Length = 144
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 7/117 (5%)
Query: 103 EQELPK---NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTN 159
E + PK NA+ L+ E +LE ++Q SA+ ++ F K L Y + S F N
Sbjct: 21 ELQFPKEFENAETLLISEVHMLLEHRKQQNE--SAEEEQELSEVFMKTLGYCQRFSRFKN 78
Query: 160 PQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDLLKEVL 216
+ + + Q L++ + E+ +AN+CP+ EEA A+VPSL+ + +D L+++L
Sbjct: 79 RETITAVRQLLAQKKLHRFELAQLANLCPDNPEEARALVPSLEGRFE--DDQLRQIL 133
>gi|346469951|gb|AEO34820.1| hypothetical protein [Amblyomma maculatum]
Length = 144
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 7/117 (5%)
Query: 103 EQELPK---NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTN 159
E + PK NA+ L+ E +LE ++Q SA+ ++ F K L Y + S F N
Sbjct: 21 ELQFPKEFENAETLLISEVHMLLEHRKQQNE--SAEEEQELSEVFMKTLGYCQRFSRFKN 78
Query: 160 PQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDLLKEVL 216
+ + + Q L++ + E+ +AN+CP+ EEA A+VPSL+ + +D L+++L
Sbjct: 79 RETISAVRQLLAQKKLHRFELAQLANLCPDNPEEARALVPSLEGRFE--DDQLRQIL 133
>gi|341899791|gb|EGT55726.1| hypothetical protein CAEBREN_32834 [Caenorhabditis brenneri]
Length = 144
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%)
Query: 144 FDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
F K L YA+ S F N + ++ + SE + EI IAN+CPE EEA A+VPSL+
Sbjct: 64 FIKTLNYARRMSRFKNRETIRAVRAIFSEKHLHKFEIAQIANLCPENAEEAKALVPSLE 122
>gi|346469949|gb|AEO34819.1| hypothetical protein [Amblyomma maculatum]
Length = 144
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 7/117 (5%)
Query: 103 EQELPK---NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTN 159
E + PK NA+ L+ E +LE ++Q SA+ ++ F K L Y + S F N
Sbjct: 21 ELQFPKEFENAETLLISEVHMLLEHRKQQNE--SAEEEQELSEVFMKTLGYCQRFSRFKN 78
Query: 160 PQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDLLKEVL 216
+ + + Q L++ + E+ +AN+CP+ EEA A+VPSL+ + +D L+++L
Sbjct: 79 RETISAVRQLLAQKKLHRFELAQLANLCPDNPEEARALVPSLEGRFE--DDQLRQIL 133
>gi|170086716|ref|XP_001874581.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164649781|gb|EDR14022.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 134
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 12/118 (10%)
Query: 109 NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQ 168
NA CL+ E ++LE + + D + ++K L Y KT + F + + +
Sbjct: 27 NAGCLLISEVKYLLENRDKD----APDTAV-----YNKTLEYVKTFAKFNTTDSASAVRE 77
Query: 169 SLS-EHGVTDGEICVIANICPETVEEAYAIVPSL-KAKRSRLNDLLKEVLIQLAKFKS 224
+L E +T E IAN+CP EEA +++PSL K RL LL+E+ + KF+S
Sbjct: 78 TLRREPALTQFETAQIANLCPADAEEAKSVIPSLVKIDDDRLQALLEEIQT-MRKFQS 134
>gi|242216811|ref|XP_002474210.1| predicted protein [Postia placenta Mad-698-R]
gi|220726628|gb|EED80571.1| predicted protein [Postia placenta Mad-698-R]
Length = 134
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 11/109 (10%)
Query: 109 NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQ 168
NA CL+ E ++LE + + D + ++K L Y KT + F + + +
Sbjct: 27 NAGCLLISEVKYLLENRDKD----APDTAV-----YNKTLEYVKTFAKFNTTDSASAVRE 77
Query: 169 SLS-EHGVTDGEICVIANICPETVEEAYAIVPSL-KAKRSRLNDLLKEV 215
+L E +T E IAN+CP EEA ++VPSL K RLN LL E+
Sbjct: 78 TLRREPALTQFETAQIANLCPVDAEEAKSVVPSLVKIDDDRLNALLVEI 126
>gi|393221841|gb|EJD07325.1| hypothetical protein FOMMEDRAFT_164324 [Fomitiporia mediterranea
MF3/22]
Length = 135
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 109 NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQ 168
NA CL+ E ++LE D V ++K L Y K + FT + + +
Sbjct: 28 NAGCLLISEVKYLLEN---------RDKDAPDTVVYNKTLEYVKQFAKFTTTDSASAVRE 78
Query: 169 SLS-EHGVTDGEICVIANICPETVEEAYAIVPSL-KAKRSRLNDLLKEVLIQLAKFKS 224
+L E +T E IAN+CP EEA +I+PSL K RL LL E+ + KF+S
Sbjct: 79 TLRREPLLTQFETAQIANLCPADAEEAKSIIPSLAKIDDDRLQALLDEIQT-MRKFQS 135
>gi|410910710|ref|XP_003968833.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Takifugu rubripes]
Length = 142
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ENAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIAAVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDLLKEVL 216
L + + E+ +AN+CPE EEA A++PSL+ + +D L+++L
Sbjct: 85 SLLLQKKLHKFELASLANLCPEAAEEAKALIPSLEGRFE--DDELQQIL 131
>gi|169849315|ref|XP_001831361.1| hypothetical protein CC1G_00908 [Coprinopsis cinerea okayama7#130]
gi|116507629|gb|EAU90524.1| hypothetical protein CC1G_00908 [Coprinopsis cinerea okayama7#130]
Length = 134
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Query: 109 NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQ 168
NA CL+ E ++LE ++ + D + ++K L Y KT + F + + +
Sbjct: 27 NAGCLLISEVKYLLENREKD----APDTAV-----YNKTLDYVKTFAKFNTTDSASAVRE 77
Query: 169 SLS-EHGVTDGEICVIANICPETVEEAYAIVPSL-KAKRSRLNDLLKEV 215
+L E +T E IAN+CP + EEA +I+PSL K RL L+ E+
Sbjct: 78 TLRREPALTQFETAQIANLCPASAEEAKSIIPSLVKIDDDRLQALVDEI 126
>gi|260841580|ref|XP_002613990.1| hypothetical protein BRAFLDRAFT_113736 [Branchiostoma floridae]
gi|229299380|gb|EEN69999.1| hypothetical protein BRAFLDRAFT_113736 [Branchiostoma floridae]
Length = 142
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 105 ELPK---NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQ 161
+ PK NA+ L++ E +LE ++Q SA+ ++ F K L Y S F N +
Sbjct: 21 QFPKEFENAETLLNSEVNMLLEHRKQQNE--SAEEEQELSEVFMKTLGYTSRFSRFKNRE 78
Query: 162 AVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
+ + L + + E+ +AN+CPE+ EEA +++PSL+ +
Sbjct: 79 TIAAVRSLLMQKKLHKFELAALANLCPESAEEAKSLIPSLEGR 121
>gi|225706322|gb|ACO09007.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Osmerus mordax]
Length = 144
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 29 ENAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 86
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ +AN+CPE EEA A++PSL+ +
Sbjct: 87 SLLLQKKLHKFELASLANLCPEAAEEAKALIPSLEGR 123
>gi|7503310|pir||T34046 hypothetical protein F43E2.1 - Caenorhabditis elegans
Length = 580
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%)
Query: 144 FDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKA 203
F K L YA+ S F N + ++ + SE + E+ IAN+CPE EEA A+VPSL+
Sbjct: 64 FIKTLNYARRMSRFKNRETIRAVRAIFSEKHLHKFEVAQIANLCPENAEEAKALVPSLEN 123
Query: 204 K 204
K
Sbjct: 124 K 124
>gi|170583187|ref|XP_001896469.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Brugia malayi]
gi|158596317|gb|EDP34682.1| DNA-directed RNA polymerase II 16 kDa polypeptide, putative [Brugia
malayi]
Length = 138
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 144 FDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKA 203
F K L Y + + F N + ++ + L+ + E+ IAN+CPET EEA A++PSL+
Sbjct: 58 FVKTLNYTRRMARFKNRETIRAVRTLLATKPLHKFEVAQIANLCPETSEEAKALIPSLEN 117
Query: 204 KRSRLNDLLKEVLIQL 219
K +D L EVL L
Sbjct: 118 KME--DDELDEVLKDL 131
>gi|225716064|gb|ACO13878.1| DNA-directed RNA polymerase II subunit RPB4 [Esox lucius]
Length = 143
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 28 ENAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIGSVR 85
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ +AN+CPE EEA A++PSL+ +
Sbjct: 86 SLLLQKKLHKFELASLANLCPEAAEEAKALIPSLEGR 122
>gi|312080440|ref|XP_003142600.1| DNA-directed RNA polymerase II polypeptide [Loa loa]
gi|307762235|gb|EFO21469.1| DNA-directed RNA polymerase II polypeptide [Loa loa]
Length = 138
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 144 FDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKA 203
F K L Y + + F N + ++ + L+ + E+ IAN+CPET EEA A++PSL+
Sbjct: 58 FVKTLNYTRRMARFKNRETIRAVRTLLATKPLHKFEVAQIANLCPETSEEAKALIPSLEN 117
Query: 204 KRSRLNDLLKEVLIQL 219
K +D L EVL L
Sbjct: 118 KME--DDELDEVLKDL 131
>gi|198434387|ref|XP_002127588.1| PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide D [Ciona intestinalis]
Length = 145
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 58/106 (54%), Gaps = 3/106 (2%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
+L+ QE ++A+ L++ E +LE + Q +AD ++ F K L Y + S F
Sbjct: 22 QLQFPQEF-ESAETLLNSEVHMLLEHRKSQNE--NADDEQELSEVFMKTLNYTQRFSRFK 78
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
N + + + L + + E+ +AN+CPET EEA A+VPSL+ +
Sbjct: 79 NRETITSVRGLLLQKDLHKFELASLANLCPETAEEAKALVPSLEGR 124
>gi|348540766|ref|XP_003457858.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Oreochromis niloticus]
Length = 144
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 29 ENAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETITAVR 86
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ +AN+CPE EEA A++PSL+ +
Sbjct: 87 SLLLQKKLHKFELASLANLCPEAAEEAKALIPSLEGR 123
>gi|317593877|ref|NP_001187972.1| DNA-directed RNA polymerase II subunit rpb4 [Ictalurus punctatus]
gi|308322187|gb|ADO28231.1| DNA-directed RNA polymerase II subunit rpb4 [Ictalurus furcatus]
gi|308324485|gb|ADO29377.1| DNA-directed RNA polymerase II subunit rpb4 [Ictalurus punctatus]
Length = 141
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 26 ENAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 83
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ +AN+CPE EEA A++PSL+ +
Sbjct: 84 SLLLQKKLHKFELASLANLCPEAAEEAKALIPSLEGR 120
>gi|50539702|ref|NP_001002317.1| DNA-directed RNA polymerase II subunit RPB4 [Danio rerio]
gi|49619057|gb|AAT68113.1| RNA polymerase II subunit D [Danio rerio]
gi|66267586|gb|AAH95261.1| Polymerase (RNA) II (DNA directed) polypeptide D [Danio rerio]
gi|182888836|gb|AAI64278.1| Polr2d protein [Danio rerio]
Length = 141
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 26 ENAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 83
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ +AN+CPE EEA A++PSL+ +
Sbjct: 84 SLLLQKKLHKFELASLANLCPEAAEEAKALIPSLEGR 120
>gi|383851643|ref|XP_003701341.1| PREDICTED: transcriptional adapter 2-alpha-like isoform 1
[Megachile rotundata]
Length = 569
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 8/118 (6%)
Query: 100 LRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTN 159
LR+ Q +NA+ L+ E + +LE + Q SA+ + F K L Y F N
Sbjct: 446 LRLAQAEFENAETLLISEVSMLLEHRKAQNE--SAEEEQEFSEVFMKSLTYTNRFRRFKN 503
Query: 160 PQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK------RSRLNDL 211
+ + + L + + E+ +AN+CPET EEA A++PSL+ + R+ L+D+
Sbjct: 504 KETIAAVRNLLMQKKLHKFELASLANLCPETPEEAKALIPSLEGRLEDEELRTILDDI 561
>gi|449272625|gb|EMC82454.1| DNA-directed RNA polymerase II subunit RPB4, partial [Columba
livia]
Length = 118
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 3 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 60
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ +AN+CPET EEA A+VPSL+ +
Sbjct: 61 SLLLQKKLHKFELACLANLCPETAEEAKALVPSLEGR 97
>gi|395519329|ref|XP_003763803.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Sarcophilus
harrisii]
Length = 142
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ +AN+CPET EEA A++PSL+ +
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEEAKALIPSLEGR 121
>gi|336368399|gb|EGN96742.1| hypothetical protein SERLA73DRAFT_140488 [Serpula lacrymans var.
lacrymans S7.3]
Length = 134
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 109 NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQ 168
NA CL+ E ++LE + + D + ++K L Y KT + F + + +
Sbjct: 27 NAGCLLISEVKYLLENRDKD----APDTAV-----YNKTLEYVKTFTKFNTTDSASAVRE 77
Query: 169 SLS-EHGVTDGEICVIANICPETVEEAYAIVPSL-KAKRSRLNDLLKEVLIQLAKFKS 224
+L E +T E IAN+CP EEA +++PSL K RL LL E+ + KF+S
Sbjct: 78 TLRREPALTQFETAQIANLCPGDAEEAKSVIPSLVKIDDDRLQALLDEIQT-MRKFQS 134
>gi|126325917|ref|XP_001366384.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
Length = 142
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ +AN+CPET EEA A++PSL+ +
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEEAKALIPSLEGR 121
>gi|291226512|ref|XP_002733236.1| PREDICTED: DNA directed RNA polymerase II polypeptide D-like
[Saccoglossus kowalevskii]
Length = 141
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 69/130 (53%), Gaps = 13/130 (10%)
Query: 96 LPLELRVEQE------LPK---NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDK 146
+P++L+ E+E PK A+ L++ E +LE + Q SA+ ++ F K
Sbjct: 5 MPVDLQHEEEDASELKFPKEFEQAETLLNSEVHMLLEHRKAQNE--SAEEEQELSEVFMK 62
Query: 147 GLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRS 206
L Y + S F N + + + L + + E+ I+N+CPE+ EEA A++PSL+ +
Sbjct: 63 TLNYTQRFSRFKNRETITEVRSLLMQKKLHKFELSSISNLCPESAEEAKALIPSLEGRFE 122
Query: 207 RLNDLLKEVL 216
++ L+E+L
Sbjct: 123 --DEELQEIL 130
>gi|350538413|ref|NP_001232096.1| putative DNA directed RNA polymerase II polypeptide D [Taeniopygia
guttata]
gi|118094833|ref|XP_422576.2| PREDICTED: uncharacterized protein LOC424754 [Gallus gallus]
gi|326925590|ref|XP_003208995.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Meleagris gallopavo]
gi|197127794|gb|ACH44292.1| putative DNA directed RNA polymerase II polypeptide D [Taeniopygia
guttata]
gi|197127795|gb|ACH44293.1| putative DNA directed RNA polymerase II polypeptide D [Taeniopygia
guttata]
gi|197127796|gb|ACH44294.1| putative DNA directed RNA polymerase II polypeptide D [Taeniopygia
guttata]
Length = 142
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ +AN+CPET EEA A++PSL+ +
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEEAKALIPSLEGR 121
>gi|83754528|pdb|2C35|A Chain A, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
gi|83754530|pdb|2C35|C Chain C, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
gi|83754532|pdb|2C35|E Chain E, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
gi|83754534|pdb|2C35|G Chain G, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
Length = 152
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 37 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 94
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ +AN+CPET EE+ A++PSL+ +
Sbjct: 95 SLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR 131
>gi|197129913|gb|ACH46411.1| putative DNA directed RNA polymerase II polypeptide D [Taeniopygia
guttata]
Length = 142
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDKQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ +AN+CPET EEA A++PSL+ +
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEEAKALIPSLEGR 121
>gi|327267294|ref|XP_003218437.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like [Anolis
carolinensis]
Length = 142
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ +AN+CPET EEA A++PSL+ +
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEEAKALIPSLEGR 121
>gi|291387945|ref|XP_002710495.1| PREDICTED: DNA directed RNA polymerase II polypeptide D
[Oryctolagus cuniculus]
Length = 142
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLTYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ +AN+CPET EE+ A++PSL+ +
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR 121
>gi|238231374|ref|NP_001154121.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Oncorhynchus
mykiss]
gi|225704188|gb|ACO07940.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Oncorhynchus
mykiss]
Length = 143
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 28 ENAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 85
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ +AN+CPE EEA A++PS++ +
Sbjct: 86 SLLLQKKLHKFELASLANLCPEAAEEAKALIPSVEGR 122
>gi|226443030|ref|NP_001140015.1| DNA-directed RNA polymerase II subunit RPB4 [Salmo salar]
gi|221221172|gb|ACM09247.1| DNA-directed RNA polymerase II subunit RPB4 [Salmo salar]
Length = 143
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 28 ENAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 85
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ +AN+CPE EEA A++PS++ +
Sbjct: 86 SLLLQKKLHKFELASLANLCPEAAEEAKALIPSVEGR 122
>gi|354497575|ref|XP_003510895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Cricetulus griseus]
Length = 158
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 7/124 (5%)
Query: 81 DKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKI 140
D + + A++ +K L L E A+ L++ E +LE ++Q SA+ ++
Sbjct: 21 DHLVSAAQILELKFTLALLAEFE-----TAETLLNSEVHMLLEHRKQQNE--SAEDEQEL 73
Query: 141 PVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPS 200
F K L Y S F N + + + L + + E+ +AN+CPET EE+ A++PS
Sbjct: 74 SEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPS 133
Query: 201 LKAK 204
L+ +
Sbjct: 134 LEGR 137
>gi|405964873|gb|EKC30315.1| DNA-directed RNA polymerase II subunit RPB4 [Crassostrea gigas]
Length = 145
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 8/135 (5%)
Query: 86 GAKVSVVKEALPLELRVEQELPK---NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPV 142
A+ V EA P E E + PK NA+ L+ E +LE + Q SA+ ++
Sbjct: 6 SAQQQNVSEA-PEEDAAELQFPKEFENAETLLISEVQMLLEHRKTQNE--SAEEEQELSE 62
Query: 143 SFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSL- 201
F K L Y S F N + + + L + + E+ +AN+CP+ EEA +++PSL
Sbjct: 63 VFMKTLNYTSRFSKFKNRETISAIRSVLMQKKLHKFELAALANLCPDNAEEAKSLIPSLE 122
Query: 202 -KAKRSRLNDLLKEV 215
+ + L LL+++
Sbjct: 123 GRFEDEELQQLLEDI 137
>gi|395855890|ref|XP_003800379.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Otolemur
garnettii]
Length = 142
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTSRFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ +AN+CPET EE+ A++PSL+ +
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR 121
>gi|380027418|ref|XP_003697421.1| PREDICTED: transcriptional adapter 2-alpha-like [Apis florea]
Length = 569
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 8/118 (6%)
Query: 100 LRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTN 159
LR+ Q +NA+ L+ E +LE + Q SA+ + F K L Y F N
Sbjct: 446 LRLAQAEFENAETLLISEVYMLLEHRKAQNE--SAEEEQEFSEVFMKSLTYTNRFRRFKN 503
Query: 160 PQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK------RSRLNDL 211
+ + + L + + E+ +AN+CPET EEA A++PSL+ + R+ L+D+
Sbjct: 504 KETIAAVRNLLMQKKLHKFELASLANLCPETPEEAKALIPSLEGRLEDEELRTILDDI 561
>gi|328787524|ref|XP_391932.4| PREDICTED: transcriptional adapter 2-alpha-like [Apis mellifera]
Length = 569
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 8/118 (6%)
Query: 100 LRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTN 159
LR+ Q +NA+ L+ E +LE + Q SA+ + F K L Y F N
Sbjct: 446 LRLAQAEFENAETLLISEVYMLLEHRKAQNE--SAEEEQEFSEVFMKSLTYTNRFRRFKN 503
Query: 160 PQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK------RSRLNDL 211
+ + + L + + E+ +AN+CPET EEA A++PSL+ + R+ L+D+
Sbjct: 504 KETIAAVRNLLMQKKLHKFELASLANLCPETPEEAKALIPSLEGRLEDEELRTILDDI 561
>gi|350418623|ref|XP_003491918.1| PREDICTED: transcriptional adapter 2-alpha-like [Bombus impatiens]
Length = 569
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 100 LRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTN 159
LR+ Q +NA+ L+ E +LE + Q SA+ + F K L Y F N
Sbjct: 446 LRLAQAEFENAETLLISEVLMLLEHRKAQNE--SAEEEQEFSEVFMKSLTYTNRFRRFKN 503
Query: 160 PQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
+ + + L + + E+ +AN+CPET EEA A++PSL+ +
Sbjct: 504 KETIAAVRNLLMQKKLHKFELASLANLCPETPEEAKALIPSLEGR 548
>gi|344290054|ref|XP_003416754.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Loxodonta africana]
Length = 142
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ +AN+CPET EE+ A++PSL+ +
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR 121
>gi|241727036|ref|XP_002413767.1| DNA-directed RNA polymerase II, putative [Ixodes scapularis]
gi|215507583|gb|EEC17075.1| DNA-directed RNA polymerase II, putative [Ixodes scapularis]
gi|442756991|gb|JAA70654.1| Putative dna-directed rna polymerase ii [Ixodes ricinus]
Length = 144
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+CL+ E +LE ++Q SA+ ++ F K L Y + S F N + + +
Sbjct: 29 ENAECLLISEVNMLLEHRKQQNE--SAEEEQELSEVFMKTLSYCQRFSRFKNRETITAVR 86
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E +AN+CP+ EEA A++PSL+
Sbjct: 87 NLLKQKKLHKFEAAQLANLCPDNPEEAKALIPSLE 121
>gi|115497864|ref|NP_001069926.1| DNA-directed RNA polymerase II subunit RPB4 [Bos taurus]
gi|94574089|gb|AAI16156.1| Polymerase (RNA) II (DNA directed) polypeptide D [Bos taurus]
gi|296490760|tpg|DAA32873.1| TPA: RNA polymerase II polypeptide D [Bos taurus]
gi|440907193|gb|ELR57366.1| DNA-directed RNA polymerase II subunit RPB4 [Bos grunniens mutus]
Length = 142
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ +AN+CPET EE+ A++PSL+ +
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR 121
>gi|426220671|ref|XP_004004537.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Ovis aries]
Length = 142
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ +AN+CPET EE+ A++PSL+ +
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR 121
>gi|392306987|ref|NP_001254716.1| DNA-directed RNA polymerase II subunit RPB4 [Macaca mulatta]
gi|402892232|ref|XP_003909323.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Papio
anubis]
gi|355566071|gb|EHH22500.1| hypothetical protein EGK_05780 [Macaca mulatta]
gi|355751666|gb|EHH55921.1| hypothetical protein EGM_05224 [Macaca fascicularis]
gi|380808166|gb|AFE75958.1| DNA-directed RNA polymerase II subunit RPB4 [Macaca mulatta]
gi|383410355|gb|AFH28391.1| DNA-directed RNA polymerase II subunit RPB4 [Macaca mulatta]
gi|384943808|gb|AFI35509.1| DNA-directed RNA polymerase II subunit RPB4 [Macaca mulatta]
Length = 142
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ +AN+CPET EE+ A++PSL+ +
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR 121
>gi|148233814|ref|NP_001087315.1| polymerase (RNA) II (DNA directed) polypeptide D [Xenopus laevis]
gi|51873947|gb|AAH78547.1| MGC85403 protein [Xenopus laevis]
Length = 142
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
++A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ESAETLLNSEVHMLLEHRKQQNE--SAEEEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ +AN+CPET +EA A++PSL+ +
Sbjct: 85 SLLLQKKLHRFELACLANLCPETADEAKALIPSLEGR 121
>gi|4758574|ref|NP_004796.1| DNA-directed RNA polymerase II subunit RPB4 [Homo sapiens]
gi|21312246|ref|NP_081278.1| DNA-directed RNA polymerase II subunit RPB4 isoform 1 [Mus
musculus]
gi|157820569|ref|NP_001102356.1| DNA-directed RNA polymerase II subunit RPB4 [Rattus norvegicus]
gi|354459066|ref|NP_001238888.1| DNA-directed RNA polymerase II subunit RPB4 [Pan troglodytes]
gi|73984138|ref|XP_540983.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Canis lupus
familiaris]
gi|297668367|ref|XP_002812414.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Pongo
abelii]
gi|301784665|ref|XP_002927746.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Ailuropoda melanoleuca]
gi|332258210|ref|XP_003278192.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Nomascus
leucogenys]
gi|410968462|ref|XP_003990724.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Felis
catus]
gi|426337134|ref|XP_004032578.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Gorilla
gorilla gorilla]
gi|3024558|sp|O15514.1|RPB4_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB4;
Short=RNA polymerase II subunit B4; AltName:
Full=DNA-directed RNA polymerase II subunit D; AltName:
Full=RNA polymerase II 16 kDa subunit; Short=RPB16
gi|50401678|sp|Q9D7M8.2|RPB4_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB4;
Short=RNA polymerase II subunit B4; AltName:
Full=DNA-directed RNA polymerase II subunit D
gi|2253633|gb|AAC80226.1| RNA polymerase II subunit hsRPB4 [Homo sapiens]
gi|2253635|gb|AAC52056.1| RNA polymerase II subunit hsRPB4 [Homo sapiens]
gi|12847830|dbj|BAB27725.1| unnamed protein product [Mus musculus]
gi|16877972|gb|AAH17205.1| Polymerase (RNA) II (DNA directed) polypeptide D [Homo sapiens]
gi|62739523|gb|AAH93795.1| Polymerase (RNA) II (DNA directed) polypeptide D [Homo sapiens]
gi|62739756|gb|AAH93797.1| Polymerase (RNA) II (DNA directed) polypeptide D [Homo sapiens]
gi|119615750|gb|EAW95344.1| polymerase (RNA) II (DNA directed) polypeptide D, isoform CRA_a
[Homo sapiens]
gi|119615751|gb|EAW95345.1| polymerase (RNA) II (DNA directed) polypeptide D, isoform CRA_a
[Homo sapiens]
gi|148664625|gb|EDK97041.1| polymerase (RNA) II (DNA directed) polypeptide D [Mus musculus]
gi|149017124|gb|EDL76175.1| polymerase (RNA) II (DNA directed) polypeptide D (predicted)
[Rattus norvegicus]
gi|208967080|dbj|BAG73554.1| polymerase (RNA) II (DNA directed) polypeptide D [synthetic
construct]
gi|281342733|gb|EFB18317.1| hypothetical protein PANDA_017559 [Ailuropoda melanoleuca]
gi|410214932|gb|JAA04685.1| polymerase (RNA) II (DNA directed) polypeptide D [Pan troglodytes]
gi|410259190|gb|JAA17561.1| polymerase (RNA) II (DNA directed) polypeptide D [Pan troglodytes]
gi|410287726|gb|JAA22463.1| polymerase (RNA) II (DNA directed) polypeptide D [Pan troglodytes]
gi|410350453|gb|JAA41830.1| polymerase (RNA) II (DNA directed) polypeptide D [Pan troglodytes]
gi|444721464|gb|ELW62200.1| DNA-directed RNA polymerase II subunit RPB4 [Tupaia chinensis]
Length = 142
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ +AN+CPET EE+ A++PSL+ +
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR 121
>gi|340722607|ref|XP_003399695.1| PREDICTED: transcriptional adapter 2-alpha-like [Bombus terrestris]
Length = 569
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 100 LRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTN 159
LR+ Q +NA+ L+ E +LE + Q SA+ + F K L Y F N
Sbjct: 446 LRLAQAEFENAETLLISEVLMLLEHRKAQNE--SAEEEQEFSEVFMKSLTYTNRFRRFKN 503
Query: 160 PQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
+ + + L + + E+ +AN+CPET EEA A++PSL+ +
Sbjct: 504 KETIAAVRNLLMQKKLHKFELASLANLCPETPEEAKALIPSLEGR 548
>gi|226372342|gb|ACO51796.1| DNA-directed RNA polymerase II subunit RPB4 [Rana catesbeiana]
Length = 142
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
++A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ESAETLLNSEVHMLLEHRKQQNE--SAEEEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ +AN+CPET +EA A++PSL+ +
Sbjct: 85 SLLLQKKLHRFELACLANLCPETADEAKALIPSLEGR 121
>gi|256084764|ref|XP_002578596.1| DNA-directed RNA polymerase II [Schistosoma mansoni]
gi|353232909|emb|CCD80264.1| putative dna-directed RNA polymerase II [Schistosoma mansoni]
Length = 140
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 12/115 (10%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIK----IPVSFDKGLLYAKTHSHFTNPQAV 163
+NA LM E +LE +EQ + + TI PV F K L Y S F N + +
Sbjct: 23 ENADTLMLAEVKILLEHRKEQ----NENATIHELELSPV-FTKTLNYVTQFSKFNNRETI 77
Query: 164 KGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKR---SRLNDLLKEV 215
+ + L++ + E+ +AN+ P+T EE+ A++PSL + R L LL E+
Sbjct: 78 ESVRNLLTQKRFHNFELASLANLLPDTAEESKALLPSLDSPRFTEEELQQLLDEI 132
>gi|431907394|gb|ELK11340.1| DNA-directed RNA polymerase II subunit RPB4 [Pteropus alecto]
Length = 149
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 34 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 91
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ +AN+CPET EE+ A++PSL+ +
Sbjct: 92 SLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR 128
>gi|62858949|ref|NP_001016248.1| polymerase (RNA) II (DNA directed) polypeptide D [Xenopus
(Silurana) tropicalis]
gi|189441952|gb|AAI67274.1| polymerase (RNA) II (DNA directed) polypeptide D [Xenopus
(Silurana) tropicalis]
gi|189442580|gb|AAI67273.1| polymerase (RNA) II (DNA directed) polypeptide D [Xenopus
(Silurana) tropicalis]
Length = 142
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
++A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ESAETLLNSEVHMLLEHRKQQNE--SAEEEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ +AN+CPET +EA A++PSL+ +
Sbjct: 85 SLLLQKKLHRFELACLANLCPETADEAKALIPSLEGR 121
>gi|345497367|ref|XP_001599421.2| PREDICTED: transcriptional adapter 2-alpha [Nasonia vitripennis]
Length = 569
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA L+ E +LE + Q SA+ + F K L Y F N + + +
Sbjct: 454 ENADTLLISEVHMLLEHRKAQNE--SAEEEQEFSEVFMKSLTYTNRFRKFKNKETIAAVR 511
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK------RSRLNDL 211
LS+ + E+ IAN+CPET EEA A++PSL+ + R+ L+D+
Sbjct: 512 NLLSQKKLHKFELASIANLCPETPEEAKALIPSLEGRLEDEELRTILDDI 561
>gi|91082085|ref|XP_966894.1| PREDICTED: similar to DNA-directed RNA polymerase II 16 kDa
polypeptide [Tribolium castaneum]
gi|270008323|gb|EFA04771.1| hypothetical protein TcasGA2_TC030678 [Tribolium castaneum]
Length = 138
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 105 ELPK---NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQ 161
+ PK NA+ L+ E +LE + Q SA+ + F K L Y F N +
Sbjct: 17 QFPKEFENAETLLISEVHMLLEHRKAQNE--SAEDEQEFSDVFMKTLTYTDRFRKFKNKE 74
Query: 162 AVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
+ + L + + E+ IAN+CPET EEA +++PSL+ +
Sbjct: 75 TISAVRNLLMQKKLHKFELAAIANLCPETTEEAKSLIPSLEGR 117
>gi|357619360|gb|EHJ71970.1| putative histone acetyltransferase [Danaus plexippus]
Length = 138
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 16/119 (13%)
Query: 97 PLELRVEQ-----ELPK---NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGL 148
PL+ VE+ + PK NA+ L+ E +LE + Q SA+ + F K L
Sbjct: 4 PLQDVVEEDAADLQFPKEFENAETLLISEVDMLLEHRKAQNE--SAEEEQEFSEVFMKTL 61
Query: 149 LYAKTHSHFTNPQ---AVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
Y F N + AV+ L QS H E+ +AN+CPET EEA A++PSL+ +
Sbjct: 62 TYTNMFKKFKNKETITAVRNLLQSKKLHKF---EVASLANLCPETPEEAKALIPSLEGR 117
>gi|355712725|gb|AES04445.1| polymerase II polypeptide D [Mustela putorius furo]
Length = 117
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 3 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 60
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ +AN+CPET EE+ A++PSL+ +
Sbjct: 61 SLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR 97
>gi|432927321|ref|XP_004080968.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Oryzias latipes]
Length = 144
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+N++ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 29 ENSETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETITAVR 86
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ +AN+CPE EEA A+ PSL+ +
Sbjct: 87 SLLLQKKLHKFELASLANLCPEAAEEAKALTPSLEGR 123
>gi|348586101|ref|XP_003478808.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like [Cavia
porcellus]
Length = 142
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSGVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ +AN+CPET EE+ A++PSL+ +
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR 121
>gi|242009106|ref|XP_002425333.1| transcriptional adaptor, putative [Pediculus humanus corporis]
gi|212509118|gb|EEB12595.1| transcriptional adaptor, putative [Pediculus humanus corporis]
Length = 602
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L+ E +LE + Q SA+ ++ F K L Y F N + + +
Sbjct: 487 ENAETLIISEVHMLLEHRKAQNE--SAEEELEFSDVFMKTLTYTNRFRKFKNKETISSVR 544
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK------RSRLNDL 211
L + + E+ +AN+CPET EEA A++PSL+ + R L+D+
Sbjct: 545 NLLMQKKLHKFELAALANLCPETPEEAKALIPSLEGRFEDEELRQTLDDI 594
>gi|310756790|gb|ADP20536.1| DNA-directed RNA polymerase II subunit RPB4 [Heterocephalus glaber]
gi|351703153|gb|EHB06072.1| DNA-directed RNA polymerase II subunit RPB4 [Heterocephalus glaber]
Length = 142
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSGVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ +AN+CPET EE+ A++PSL+ +
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR 121
>gi|156383638|ref|XP_001632940.1| predicted protein [Nematostella vectensis]
gi|156220003|gb|EDO40877.1| predicted protein [Nematostella vectensis]
Length = 138
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 102 VEQELPK---NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
E + PK +A+ L++ E +LE + Q SA+ ++ F K L Y + S +
Sbjct: 14 TELQFPKEFESAESLLNSEVYMLLEHRKTQNE--SAEEEQELSEVFMKTLGYTQKFSRYK 71
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
N + + + L + + E+ +AN+CPET EEA A++PSL+ +
Sbjct: 72 NRETIAQVRSLLGKKKLHKFELACLANLCPETAEEAKALIPSLEGR 117
>gi|383851645|ref|XP_003701342.1| PREDICTED: transcriptional adapter 2-alpha-like isoform 2
[Megachile rotundata]
Length = 580
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 8/110 (7%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L+ E + +LE + Q SA+ + F K L Y F N + + +
Sbjct: 465 ENAETLLISEVSMLLEHRKAQNE--SAEEEQEFSEVFMKSLTYTNRFRRFKNKETIAAVR 522
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK------RSRLNDL 211
L + + E+ +AN+CPET EEA A++PSL+ + R+ L+D+
Sbjct: 523 NLLMQKKLHKFELASLANLCPETPEEAKALIPSLEGRLEDEELRTILDDI 572
>gi|449679512|ref|XP_004209350.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like [Hydra
magnipapillata]
Length = 143
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 7/119 (5%)
Query: 102 VEQELPK---NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
E + PK +A+ L++ E +LE + Q S D ++ F K L Y + S F
Sbjct: 19 TELQFPKEFESAETLLNSEVFMLLEHRKAQNE--SVDDEQEMSDVFMKTLNYTQRFSRFK 76
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK--RSRLNDLLKEV 215
N + + + LS+ + E+ IAN+CPE EEA ++PSL+ + L +L E+
Sbjct: 77 NRETIAQVRGLLSKKKLHKFELACIANLCPENAEEARTLIPSLEGRFVEEELQQILDEI 135
>gi|328772120|gb|EGF82159.1| hypothetical protein BATDEDRAFT_86911 [Batrachochytrium
dendrobatidis JAM81]
Length = 138
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
++ +CL+ E +LE +++ S D +I + K + Y + S FTN Q VK +
Sbjct: 25 QDVQCLLISEVRVLLEVAKDRKRKESGDGSISDIMQ--KTIDYCQQFSRFTNKQTVKEIR 82
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKR-SRLNDLLKEVLIQLAKFK 223
+ E+ +AN+C ET EEA ++PSL K L +LL + L L KF+
Sbjct: 83 NLFPDDQFHQFEMAQLANLCCETAEEAKVLIPSLSTKHDDELQNLLND-LQALRKFQ 138
>gi|310756788|gb|ADP20535.1| DNA-directed RNA polymerase II subunit RPB4 [Fukomys anselli]
Length = 142
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSGVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ +AN+CPET EE+ A++PSL+ +
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR 121
>gi|116488104|gb|ABJ98634.1| RNA polymerase II subunit D [Scophthalmus maximus]
Length = 129
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+N++ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 29 ENSETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETITAVR 86
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ +AN+CPE EEA A+ PSL+ +
Sbjct: 87 SLLLQKKLHKFELASMANLCPEAAEEAKALTPSLEGR 123
>gi|326434249|gb|EGD79819.1| hypothetical protein PTSG_10802 [Salpingoeca sp. ATCC 50818]
Length = 153
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 17/149 (11%)
Query: 86 GAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFD 145
AK SVV++A LE + E L+ E ILE ++ L DP + F
Sbjct: 9 DAKKSVVEDANSLEFFEDFEQVSTVPLLL-SEVEKILEARKDLQ--LREDPDAAMSAEFT 65
Query: 146 KGLLYAKTHSH---FTNPQAVKGLFQSLS------EHGVTDGEICVIANICPETVEEAYA 196
K L YA+ H + +A++ + + L E + E + N+ PETVEEA A
Sbjct: 66 KTLDYAQRFGHSRSYEADEALRSIMEELRTQTPDMEKRLHKFEEVQLINLAPETVEEAKA 125
Query: 197 IVPSLKAKRSRL-NDLLKEVLIQLAKFKS 224
++P+L R+ +D+L+ VL Q+ F+S
Sbjct: 126 LIPTL----VRVDDDILENVLQQIMAFRS 150
>gi|313219963|emb|CBY43664.1| unnamed protein product [Oikopleura dioica]
gi|313232607|emb|CBY19277.1| unnamed protein product [Oikopleura dioica]
Length = 137
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 138 IKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAI 197
+++ F K L Y K S F N + + L+ + EI +AN+CPET +EA A+
Sbjct: 50 VELSEVFQKTLDYCKRFSKFKNQDVIVNVRTMLTSKRLHRFEIAALANLCPETADEAKAL 109
Query: 198 VPSLKAK 204
+PS++ +
Sbjct: 110 IPSMEGR 116
>gi|393233961|gb|EJD41528.1| hypothetical protein AURDEDRAFT_115438 [Auricularia delicata
TFB-10046 SS5]
Length = 135
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 12/118 (10%)
Query: 109 NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQ 168
NA CL+ E +L+ ++ P + ++K L Y KT + F+ ++ + +
Sbjct: 28 NAGCLLISEVKLLLDHRRDNA------PDTAV---YNKTLEYVKTFAKFSTAESASAVRE 78
Query: 169 SLS-EHGVTDGEICVIANICPETVEEAYAIVPSL-KAKRSRLNDLLKEVLIQLAKFKS 224
+L E +T E +AN+ P V+EA +IVPSL K RL LL EV L KF++
Sbjct: 79 TLRREPQLTQFETAQLANLVPADVDEAKSIVPSLVKIDDDRLQSLLDEVQT-LRKFQT 135
>gi|196007958|ref|XP_002113845.1| hypothetical protein TRIADDRAFT_26370 [Trichoplax adhaerens]
gi|190584249|gb|EDV24319.1| hypothetical protein TRIADDRAFT_26370 [Trichoplax adhaerens]
Length = 106
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 144 FDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKA 203
F K L + K S F N + + + L++H E+ +AN+CPET +EA +++PSL
Sbjct: 25 FQKTLSHTKRFSKFKNKETIAAVRSLLNKHNFHKFELASLANLCPETSDEAKSLMPSLNG 84
Query: 204 K 204
K
Sbjct: 85 K 85
>gi|197127797|gb|ACH44295.1| putative DNA directed RNA polymerase II polypeptide D [Taeniopygia
guttata]
Length = 142
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFRGRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ +AN+CPET EEA A++PSL+ +
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEEAKALIPSLEGR 121
>gi|389609397|dbj|BAM18310.1| histone acetyltransferase rpb4 [Papilio xuthus]
Length = 151
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQ---AVK 164
+NA+ L+ E +LE + Q SA+ + F K L Y F N + AV+
Sbjct: 23 ENAETLLISEVDMLLEHRKAQNE--SAEEEQEFSEVFMKTLTYTNMFKKFKNKETIAAVR 80
Query: 165 GLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L QS H E+ +AN+CPET EEA A++PSL+ +
Sbjct: 81 NLLQSKKLHKF---EVASLANLCPETPEEAKALIPSLEGR 117
>gi|72150941|ref|XP_795859.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Strongylocentrotus purpuratus]
Length = 142
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 144 FDKGLLYAKTHSHFTNPQA---VKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPS 200
F K L Y S F N + V+GL Q + + E+ ++AN+CPET EEA A++PS
Sbjct: 59 FMKTLNYTGRFSRFKNRETIGDVRGLLQQ-QQPKLHKFELALLANLCPETAEEAKALIPS 117
Query: 201 LKAKRSRLNDLLKEVL 216
L+ + +D L EVL
Sbjct: 118 LEGRFE--DDELTEVL 131
>gi|390370008|ref|XP_003731750.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like,
partial [Strongylocentrotus purpuratus]
Length = 95
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 144 FDKGLLYAKTHSHFTNPQA---VKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPS 200
F K L Y S F N + V+GL Q + + E+ ++AN+CPET EEA A++PS
Sbjct: 12 FMKTLNYTGRFSRFKNRETIGDVRGLLQQ-QQPKLHKFELALLANLCPETAEEAKALIPS 70
Query: 201 LKAKRSRLNDLLKEVL 216
L+ + +D L EVL
Sbjct: 71 LEGRFE--DDELTEVL 84
>gi|332022936|gb|EGI63202.1| Transcriptional adapter 2-alpha [Acromyrmex echinatior]
Length = 567
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 100 LRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTN 159
LR+ Q +NA+ L+ E +LE + Q SA+ + F K L Y N
Sbjct: 444 LRLAQAQFENAETLLISEVYMLLEHRKAQNE--SAEEEQEFSEVFMKSLTYTNRFGKLKN 501
Query: 160 PQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK------RSRLNDL 211
+ + + L + + EI +AN+CPET EEA A++PSL+ + R+ L+D+
Sbjct: 502 KETIAAVRSLLMQKKLHKFEIASLANLCPETPEEAKALIPSLEGRLEDEELRTILDDI 559
>gi|345315614|ref|XP_001517684.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Ornithorhynchus anatinus]
Length = 104
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 133 SADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVE 192
SA+ ++ F K L Y S F N + + + L + + E+ +AN+CPET E
Sbjct: 12 SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAE 71
Query: 193 EAYAIVPSLKAK 204
EA A++PSL+ +
Sbjct: 72 EAKALIPSLEGR 83
>gi|307179587|gb|EFN67883.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Camponotus
floridanus]
Length = 124
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L+ E +LE + Q SA+ + F K L Y N + + +
Sbjct: 9 ENAETLLISEVYMLLEHRKAQNE--SAEEEQEFSEVFMKSLTYTNRFGKLKNKETIAAVR 66
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK------RSRLNDL 211
L + + EI +AN+CPET EEA A++PSL+ + R+ L+D+
Sbjct: 67 SLLMQKKLHKFEIASLANLCPETPEEAKALIPSLEGRLEDEELRTILDDI 116
>gi|47216495|emb|CAG02146.1| unnamed protein product [Tetraodon nigroviridis]
Length = 145
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ENAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETITAVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVP 199
L + + E+ +AN+CPE EEA A++P
Sbjct: 85 SLLLQKKLHKFELASLANLCPEAAEEAKALIP 116
>gi|225716192|gb|ACO13942.1| DNA-directed RNA polymerase II subunit RPB4 [Esox lucius]
Length = 143
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L++ E +LE ++Q SA+ ++ F K L S F N + + +
Sbjct: 28 ENAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNCTARFSRFKNRETIGSVR 85
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ +AN+CPE EEA A++PSL+ +
Sbjct: 86 SLLLQKKLHKFELASLANLCPEAAEEAKALIPSLEGR 122
>gi|307196407|gb|EFN77996.1| Transcriptional adapter 2-alpha [Harpegnathos saltator]
Length = 570
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 100 LRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTN 159
L++ Q +NA+ L+ E +LE + Q SA+ + F K L Y N
Sbjct: 447 LKLAQAQFENAETLLISEVYMLLEHRKAQNE--SAEEEQEFSEVFMKSLTYTNRFGKLKN 504
Query: 160 PQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
+ + + L++ + E+ +AN+CPET EEA A++PSL+ +
Sbjct: 505 KETITAVRNLLAQKKLHKFELASLANLCPETPEEAKALIPSLEGR 549
>gi|195343319|ref|XP_002038245.1| GM10729 [Drosophila sechellia]
gi|194133266|gb|EDW54782.1| GM10729 [Drosophila sechellia]
Length = 146
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 106 LPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKG 165
PK++K L+ E +L+ + Q SAD + F K Y + F N + +
Sbjct: 9 FPKSSKALLISEVHMLLDHRKRQNE--SADEEQEFSEVFMKTYAYTDSFRKFKNKETIMS 66
Query: 166 LFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ + N+CPE EEA A++PSL+ +
Sbjct: 67 ARSFLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGR 105
>gi|28076931|ref|NP_081377.1| DNA-directed RNA polymerase II subunit RPB4 isoform 2 [Mus
musculus]
gi|338715739|ref|XP_001499044.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like [Equus
caballus]
gi|13435942|gb|AAH04810.1| Polymerase (RNA) II (DNA directed) polypeptide D [Mus musculus]
gi|344254896|gb|EGW11000.1| DNA-directed RNA polymerase II subunit RPB4 [Cricetulus griseus]
gi|432115789|gb|ELK36944.1| DNA-directed RNA polymerase II subunit RPB4 [Myotis davidii]
Length = 104
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 133 SADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVE 192
SA+ ++ F K L Y S F N + + + L + + E+ +AN+CPET E
Sbjct: 12 SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAE 71
Query: 193 EAYAIVPSLKAK 204
E+ A++PSL+ +
Sbjct: 72 ESKALIPSLEGR 83
>gi|443714916|gb|ELU07114.1| hypothetical protein CAPTEDRAFT_220021 [Capitella teleta]
Length = 139
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L+ E +L+ +Q +A+ ++ F K L + + F N + + +
Sbjct: 24 ENAETLLISEVYMLLQHRAQQNE--NAEDEQELSEVFKKTLTHTERFKKFKNRETIASVR 81
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPET EEA A++PSL+
Sbjct: 82 SLLMQKKLHKFELAALANLCPETAEEAKALIPSLE 116
>gi|321476639|gb|EFX87599.1| hypothetical protein DAPPUDRAFT_306425 [Daphnia pulex]
Length = 137
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L+ E +L+ + Q SA+ ++ F K L Y + S F N + + +
Sbjct: 22 ENAETLLISEVHMLLDHRKLQNE--SAEDEQELSEVFMKTLNYTQRFSKFKNRETIAAIR 79
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ +AN+CPE+ EEA +++PSL+ +
Sbjct: 80 SLLMQKKLHKFELAALANLCPESPEEAKSLIPSLEGR 116
>gi|391330614|ref|XP_003739752.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Metaseiulus occidentalis]
Length = 144
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Query: 87 AKVSVVKEALPLELRVEQELPK---NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVS 143
A +VV EA+ E E PK NA+ L+ E +LE +Q SA+ ++
Sbjct: 6 ASAAVVLEAVE-EDACELSFPKDFENAETLLISEVHMLLEHRSKQNE--SAEEEQELSEF 62
Query: 144 FDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKA 203
F K Y S F N + + + L + + E+ +AN+CPET EEA A++PSL+
Sbjct: 63 FTKTHGYCTRFSKFKNRETIGEVRNLLQQKKLHKFELAQLANLCPETPEEAKALIPSLEG 122
Query: 204 KRSRLNDLLKEVL 216
+ ++ L+EVL
Sbjct: 123 RFE--DEDLREVL 133
>gi|322792882|gb|EFZ16715.1| hypothetical protein SINV_12361 [Solenopsis invicta]
Length = 589
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L+ E +LE + Q SA+ + F K L Y N + + +
Sbjct: 474 ENAETLLISEVYMLLEHRKAQNE--SAEEEQEFSEVFMKSLTYTNRFGKLKNKETISAVR 531
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK------RSRLNDL 211
L + + EI +AN+CPET EEA A++PSL+ + R+ L+D+
Sbjct: 532 SLLMQKKLHKFEIASLANLCPETPEEAKALIPSLEGRLEDEELRTILDDI 581
>gi|226372134|gb|ACO51692.1| DNA-directed RNA polymerase II subunit RPB4 [Rana catesbeiana]
Length = 142
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
++A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ESAETLLNPEVHMLLEHRKQQNE--SAEEEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ +AN+CP T +EA A++PSL+ +
Sbjct: 85 SLLLQKKLHRFELACLANLCPGTADEAKALIPSLEGR 121
>gi|195569945|ref|XP_002102969.1| GD20190 [Drosophila simulans]
gi|194198896|gb|EDX12472.1| GD20190 [Drosophila simulans]
Length = 782
Score = 44.3 bits (103), Expect = 0.041, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Query: 98 LELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHF 157
+++ V + +NA+ L+ E +L+ + Q SAD + F K Y + F
Sbjct: 657 IKIDVNKTQFENAETLLISEVHMLLDHRKRQNE--SADEEQEFSEVFMKTYAYTDSFRKF 714
Query: 158 TNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
N + + L + + E+ + N+CPE EEA A++PSL+ +
Sbjct: 715 KNKETIMSARSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGR 761
>gi|403411898|emb|CCL98598.1| predicted protein [Fibroporia radiculosa]
Length = 153
Score = 43.9 bits (102), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 109 NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQ 168
NA CL+ E ++LE + + D + ++K L Y KT + F + + +
Sbjct: 28 NAGCLLISEVKYLLENRDKD----APDTAV-----YNKTLEYVKTFAKFNTTDSASAVRE 78
Query: 169 SLS-EHGVTDGEICVIANICPETVEEAYAIVP 199
+L E +T E IAN+CP EEA ++VP
Sbjct: 79 TLRREPALTQFETAQIANLCPANAEEAKSVVP 110
>gi|390178627|ref|XP_003736694.1| GA30251 [Drosophila pseudoobscura pseudoobscura]
gi|388859523|gb|EIM52767.1| GA30251 [Drosophila pseudoobscura pseudoobscura]
Length = 139
Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L+ E +L+ + Q SAD + F K Y + F N + + +
Sbjct: 24 ENAETLLISEVHMLLDHRKRQNE--SADEEQEFSEVFMKTYAYTDSFRKFKNKETIMSVR 81
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ + N+CPE EEA A++PSL+ +
Sbjct: 82 SLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGR 118
>gi|194764549|ref|XP_001964391.1| GF23150 [Drosophila ananassae]
gi|190614663|gb|EDV30187.1| GF23150 [Drosophila ananassae]
Length = 624
Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L+ E +L+ + Q SAD + F K Y + F N + + +
Sbjct: 509 ENAETLLISEVHMLLDHRKRQNE--SADEEQEFSEVFMKTYAYTDSFRKFKNKETIMSVR 566
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ + N+CPE EEA A++PSL+ +
Sbjct: 567 SLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGR 603
>gi|353242845|emb|CCA74453.1| hypothetical protein PIIN_08406 [Piriformospora indica DSM 11827]
Length = 135
Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Query: 109 NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQ 168
NA CL+ E +L+ + P + PV F+K + Y S F+ + +
Sbjct: 27 NAGCLLISEVKILLKEKE-------GKPGVDSPV-FNKTVEYVNMFSKFSTEDTIGLVRA 78
Query: 169 SLSEHG-VTDGEICVIANICPETVEEAYAIVPSL-KAKRSRLNDLLKEV 215
+L +T E +AN+CP T EEA +I+PSL K L LL E+
Sbjct: 79 TLRRQANLTQFETAQLANLCPSTAEEAKSIIPSLAKYDDDELQPLLDEL 127
>gi|387018222|gb|AFJ51229.1| DNA-directed RNA polymerase II subunit RPB4-like [Crotalus
adamanteus]
Length = 142
Score = 43.1 bits (100), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q S + ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SVEDEQELSELFMKTLNYTGRFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ +AN+ PET EEA A++PSL+ +
Sbjct: 85 SLLLQKKLHKFELACLANLGPETAEEAKALIPSLEGR 121
>gi|302687374|ref|XP_003033367.1| hypothetical protein SCHCODRAFT_54491 [Schizophyllum commune H4-8]
gi|300107061|gb|EFI98464.1| hypothetical protein SCHCODRAFT_54491 [Schizophyllum commune H4-8]
Length = 135
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 13/116 (11%)
Query: 112 CLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLS 171
CL+ E ++LE +E+ A +A + K L Y KT + + + + + L
Sbjct: 30 CLLISEVKYLLEN-REKTAPDNA--------VYAKTLDYVKTFAKWHTTDSASAVREILR 80
Query: 172 -EHGVTDGEICVIANICPETVEEAYAIVPSL--KAKRSRLNDLLKEVLIQLAKFKS 224
E +T E +AN+CP EEA +I+PSL K RL LL E+ + KF++
Sbjct: 81 REPQLTQFETAQLANLCPAEAEEAKSIIPSLEDKVDDDRLQALLNEIQT-MRKFQT 135
>gi|452987725|gb|EME87480.1| hypothetical protein MYCFIDRAFT_27879 [Pseudocercospora fijiensis
CIRAD86]
Length = 152
Score = 42.7 bits (99), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Query: 150 YAKTHSHFTNPQAVKGLFQSLSEH-----GVTDGEICVIANICPETVEEAYAIVPSLKAK 204
Y KT S F + QA+ + Q S G+ + E C +A +C ++VEEA ++PSL+ K
Sbjct: 73 YCKTFSRFRDNQAITQVNQITSNLTARGLGIVEFERCQLATLCCDSVEEARTLIPSLEGK 132
Query: 205 RSRLNDLLKEVLIQLAKFK 223
S ++ L+ L +++K +
Sbjct: 133 IS--DEELENTLNEISKLR 149
>gi|195152017|ref|XP_002016935.1| GL22027 [Drosophila persimilis]
gi|194111992|gb|EDW34035.1| GL22027 [Drosophila persimilis]
Length = 629
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L+ E +L+ + Q SAD + F K Y + F N + + +
Sbjct: 514 ENAETLLISEVHMLLDHRKRQNE--SADEEQEFSEVFMKTYAYTDSFRKFKNKETIMSVR 571
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ + N+CPE EEA A++PSL+ +
Sbjct: 572 SLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGR 608
>gi|225713530|gb|ACO12611.1| DNA-directed RNA polymerase II subunit RPB4 [Lepeophtheirus
salmonis]
gi|290462181|gb|ADD24138.1| DNA-directed RNA polymerase II subunit RPB4 [Lepeophtheirus
salmonis]
gi|290562964|gb|ADD38876.1| DNA-directed RNA polymerase II subunit RPB4 [Lepeophtheirus
salmonis]
Length = 139
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 91 VVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLY 150
+ ++A L+ E E P+ K L+ E +LE Q+Q +A+ + F K L Y
Sbjct: 8 IEEDASDLQFPTEFEDPE-TKTLLISEVHILLEHRQKQND--AAEEEQEFSEVFMKTLNY 64
Query: 151 AKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
+ + F N + + L++ + E+ +AN+CP++ EEA +++PSL+ +
Sbjct: 65 TQRFAKFRNLDNIASIRSVLTQKKLHKFELAALANLCPDSPEEARSLIPSLEGR 118
>gi|281362019|ref|NP_001014633.2| Rpb4 [Drosophila melanogaster]
gi|143459115|sp|Q9VEA5.5|RPB4_DROME RecName: Full=DNA-directed RNA polymerase II 16 kDa polypeptide;
AltName: Full=RNA polymerase II accessory factor rpb4
gi|66571194|gb|AAY51562.1| IP01323p [Drosophila melanogaster]
gi|66772825|gb|AAY55724.1| IP02337p [Drosophila melanogaster]
gi|66772827|gb|AAY55725.1| IP02340p [Drosophila melanogaster]
gi|220943406|gb|ACL84246.1| Rpb4-PF [synthetic construct]
gi|220955702|gb|ACL90394.1| Rpb4-PF [synthetic construct]
gi|272477037|gb|AAF55522.5| Rpb4 [Drosophila melanogaster]
Length = 139
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L+ E +L+ + Q SAD + F K Y + F N + +
Sbjct: 24 ENAETLLISEVHMLLDHRKRQNE--SADEEQEFSEVFMKTYAYTDSFRKFKNKETIMSAR 81
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ + N+CPE EEA A++PSL+ +
Sbjct: 82 SLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGR 118
>gi|83314554|ref|XP_730410.1| RNA polymerase Rpb4 [Plasmodium yoelii yoelii 17XNL]
gi|23490125|gb|EAA21975.1| RNA polymerase Rpb4 [Plasmodium yoelii yoelii]
Length = 152
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 14/123 (11%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLS---ADPTIKIPVSFDKGLLYAKTHSHFTNPQAVK 164
+N KCL CE IL +Q+ L S D I SFD YA + N ++
Sbjct: 20 QNCKCLNLCELQLIL---GDQLRLTSKRNEDAQALIRSSFD----YANRFATIKNRSSIV 72
Query: 165 GLFQSLSEHG-VTDGEICVIANICPETVEEAYAIVPSL-KAKRSRLNDLLKEVLIQLAKF 222
+ +L G + + EI ++ N+ P+T+ EA +PSL + LN +L+ ++I+ +F
Sbjct: 73 DIRTNLERIGELYEYEIAMLVNLLPKTILEARYFIPSLIRLNEETLNSILEHLIIK--QF 130
Query: 223 KST 225
+S
Sbjct: 131 ESN 133
>gi|27263229|gb|AAN88031.1| RNA polymerase II accessory factor rpb4 [Drosophila melanogaster]
gi|27263231|gb|AAN88032.1| RNA polymerase II accessory factor rpb4 [Drosophila melanogaster]
Length = 139
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L+ E +L+ + Q SAD + F K Y + F N + +
Sbjct: 24 ENAETLLISEVHMLLDHRKRQNE--SADEEQEFSEVFMKTYAYTDSFRKFKNKETIMSAR 81
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ + N+CPE EEA A++PSL+ +
Sbjct: 82 SLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGR 118
>gi|336381198|gb|EGO22350.1| hypothetical protein SERLADRAFT_339075 [Serpula lacrymans var.
lacrymans S7.9]
Length = 116
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 109 NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQ 168
NA CL+ E ++LE + + D + ++K L Y KT + F + + +
Sbjct: 33 NAGCLLISEVKYLLENRDKD----APDTAV-----YNKTLEYVKTFTKFNTTDSASAVRE 83
Query: 169 SLS-EHGVTDGEICVIANICPETVEEAYAIVP 199
+L E +T E IAN+CP EEA +++P
Sbjct: 84 TLRREPALTQFETAQIANLCPGDAEEAKSVIP 115
>gi|340376921|ref|XP_003386979.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Amphimedon queenslandica]
Length = 139
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 110 AKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQS 169
A L+ E +LE + Q S D + F K L Y +T S + + + + + +
Sbjct: 26 ADALLVSEVKMLLEHRKAQHE--SQDDDQDLSEVFTKTLDYCQTFSKYNSRETISAIRGA 83
Query: 170 LSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRS--RLNDLLKEV 215
L +H + E+ +AN+ P +EA ++PSL+ + LN+LL ++
Sbjct: 84 LQKHKLHKFEVACLANLAPADADEAKTLLPSLQGRFDDLELNELLDDI 131
>gi|194900250|ref|XP_001979670.1| GG16596 [Drosophila erecta]
gi|195036818|ref|XP_001989865.1| GH19030 [Drosophila grimshawi]
gi|195110591|ref|XP_001999863.1| GI22842 [Drosophila mojavensis]
gi|195392503|ref|XP_002054897.1| GJ24701 [Drosophila virilis]
gi|195497583|ref|XP_002096162.1| GE25223 [Drosophila yakuba]
gi|190651373|gb|EDV48628.1| GG16596 [Drosophila erecta]
gi|193894061|gb|EDV92927.1| GH19030 [Drosophila grimshawi]
gi|193916457|gb|EDW15324.1| GI22842 [Drosophila mojavensis]
gi|194152983|gb|EDW68417.1| GJ24701 [Drosophila virilis]
gi|194182263|gb|EDW95874.1| GE25223 [Drosophila yakuba]
Length = 104
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%)
Query: 133 SADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVE 192
SAD + F K Y + F N + + + L + + E+ + N+CPE E
Sbjct: 12 SADEEQEFSEVFMKTYAYTDSFRKFKNKETIMSVRSLLMQKKLHKFELAALGNLCPEAPE 71
Query: 193 EAYAIVPSLKAK 204
EA A++PSL+ +
Sbjct: 72 EAKALIPSLEGR 83
>gi|409040527|gb|EKM50014.1| hypothetical protein PHACADRAFT_105721 [Phanerochaete carnosa
HHB-10118-sp]
Length = 126
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 109 NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQ 168
NA CL+ E ++LE ++ P + ++K L Y KT F A + +
Sbjct: 35 NAGCLLISEVKYLLENRDKE------PPDTAV---YNKTLEYVKTFGKFNTTDAASAVRE 85
Query: 169 SLS-EHGVTDGEICVIANICPETVEEAYAIVP 199
+L E +T E IAN+CP EE+ +I+P
Sbjct: 86 TLRREPALTQFETAQIANLCPADSEESKSIIP 117
>gi|195348909|ref|XP_002040989.1| GM15313 [Drosophila sechellia]
gi|194122594|gb|EDW44637.1| GM15313 [Drosophila sechellia]
Length = 137
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L+ E +L+ + Q SAD + F K Y + F N + +
Sbjct: 22 ENAETLLISEVHMLLDHRKRQNE--SADEEQEFSEVFMKTYAYTDSFRKFKNKETIMSAR 79
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
L + + E+ + N+CPE EEA A++PSL+ +
Sbjct: 80 SLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGR 116
>gi|453089606|gb|EMF17646.1| RNA_pol_Rpb4-domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 148
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 150 YAKTHSHFTNPQAVKGLFQ-----SLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
Y KT S F + AV + Q + +G+ + E IA +C ++ EEA ++PSL+ K
Sbjct: 69 YCKTFSRFKDANAVTQVNQISSGLTARGYGIVEFERAQIATLCCDSAEEARTLIPSLEGK 128
Query: 205 RSRLNDLLKEVLIQLAKFK 223
S +D L+ VL +++K +
Sbjct: 129 IS--DDELQAVLDEISKLR 145
>gi|240849411|ref|NP_001155406.1| histone acetyltransferase-like [Acyrthosiphon pisum]
gi|328700946|ref|XP_003241435.1| PREDICTED: DNA-directed RNA polymerase II 16 kDa polypeptide-like
[Acyrthosiphon pisum]
gi|239793466|dbj|BAH72847.1| ACYPI000946 [Acyrthosiphon pisum]
Length = 138
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 7/115 (6%)
Query: 105 ELPK---NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQ 161
+ PK NA+ L+ E +L+ + Q SA+ + F+K L Y + S F N +
Sbjct: 17 QFPKEFENAETLLISEVNMLLKFRKNQNE--SAEEEQEFSEVFNKTLTYTEQCSKFKNKE 74
Query: 162 AVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDLLKEVL 216
+ + L+ + E+ I N+CP+ +EA +++PSL+ + +D L+++L
Sbjct: 75 TIVAVRNLLAGKKLHKFELASIGNLCPQLADEAKSLIPSLEGRFD--DDELQQIL 127
>gi|358055256|dbj|GAA98764.1| hypothetical protein E5Q_05452 [Mixia osmundae IAM 14324]
Length = 477
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 3/109 (2%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
+L++ +E K A CLM E +++ E +S +P ++ V+ K Y + S
Sbjct: 20 QLKLGKEFEK-ASCLMINEVKMLIDNQGEDAKRVSREPG-QLNVT-KKMWEYVERFSPGL 76
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSR 207
P + L +L + D E C +AN+ P+TVEEA AI+PS++ + R
Sbjct: 77 EPSDIARLRSALLRESLADFEACSLANLRPKTVEEAKAILPSIQREAVR 125
>gi|334349213|ref|XP_001369289.2| PREDICTED: hypothetical protein LOC100015134 [Monodelphis
domestica]
Length = 186
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 157 FTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDL-LKEV 215
F N + + + L + + E+ +AN+CPET EEA A++PSL RL D L+EV
Sbjct: 118 FQNRETIASVRGLLLQKKLHKFELAALANLCPETAEEAKALIPSLAG---RLEDEDLQEV 174
Query: 216 L 216
L
Sbjct: 175 L 175
>gi|401827328|ref|XP_003887756.1| RNA polymerase II subunit Rpb4 [Encephalitozoon hellem ATCC 50504]
gi|392998763|gb|AFM98775.1| RNA polymerase II subunit Rpb4 [Encephalitozoon hellem ATCC 50504]
Length = 121
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 117 EAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVT 176
EA ++LEG +E+ AD F L Y + + L +LS G +
Sbjct: 20 EARYLLEGQKER---FRADFRSNASKIFRSTLGYLDEFCRIKDKSVAEDLRTTLSALGFS 76
Query: 177 DGEICVIANICPETVEEAYAIVPSLKAK 204
+ EI + ++ P++VEEA ++VPSL++K
Sbjct: 77 ELEIALFGSLFPQSVEEAKSLVPSLESK 104
>gi|449020090|dbj|BAM83492.1| RNA polymerase II subunit [Cyanidioschyzon merolae strain 10D]
Length = 136
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 109 NAKC--LMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGL 166
N C L+ CE A +L +++ A L A+ + F K Y + + F + + K +
Sbjct: 23 NEHCQPLLICEVAELL---RQKRAELPAELQSSLGPIFVKSEAYVERFNQFRSAEVAKVV 79
Query: 167 FQSLSEHG-VTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDLLKEVLIQLA 220
L H + E +AN+ PET EA AI+PSLK K +D+L ++L LA
Sbjct: 80 RVRLERHPELHPFERAQLANLLPETPAEAKAIIPSLKGKLD--DDVLGQLLRDLA 132
>gi|390371162|dbj|GAB65043.1| DNA-directed RNA polymerase II 16 kDa subunit [Plasmodium cynomolgi
strain B]
Length = 132
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 12/114 (10%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLS---ADPTIKIPVSFDKGLLYAKTHSHFTNPQAVK 164
KN KCL CE IL +Q+ L S + I SFD YA + N ++
Sbjct: 19 KNCKCLNLCELQLIL---GDQLRLTSKRNEEAQTLIKSSFD----YANKFATIKNRSSIV 71
Query: 165 GLFQSLSEHG-VTDGEICVIANICPETVEEAYAIVPSL-KAKRSRLNDLLKEVL 216
+ +L G + + EI ++ N+ P+TV+EA +PSL + LN +L+ ++
Sbjct: 72 DVRTNLERIGELHEYEIAMLVNLLPKTVQEARYFIPSLIRLSDETLNSILEHLI 125
>gi|302845327|ref|XP_002954202.1| hypothetical protein VOLCADRAFT_106291 [Volvox carteri f.
nagariensis]
gi|300260407|gb|EFJ44626.1| hypothetical protein VOLCADRAFT_106291 [Volvox carteri f.
nagariensis]
Length = 140
Score = 40.0 bits (92), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
++A + + E A IL Q P+ + K L Y + + TNP+AV+ +
Sbjct: 17 EHAAVISNSEVATILSEYMRQRR--EEKPSFQPQPLVQKTLEYVQKFNCGTNPEAVQAMR 74
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSL 201
+ G+ E +IAN+ PE +EA ++PSL
Sbjct: 75 NYMENFGLKPFEWGLIANLMPEDTDEANKLIPSL 108
>gi|392512812|emb|CAD26382.2| DNA-DIRECTED RNA POLYMERASE II 16KDA POLYPEPTIDE [Encephalitozoon
cuniculi GB-M1]
Length = 120
Score = 39.7 bits (91), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
K++ +M EA ++LEG +E+ AD F L Y + + L
Sbjct: 11 KDSHPIMLAEARYLLEGQKER---FRADFRSNASKVFRSTLGYLDDFCRIKDKSVAEDLR 67
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSL 201
+LS G + EI + ++ P++VEEA ++VPSL
Sbjct: 68 TTLSGLGFGEVEIALFGSLFPQSVEEAKSLVPSL 101
>gi|291545061|emb|CBL18170.1| yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF
N-terminal region [Ruminococcus champanellensis 18P13]
Length = 509
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 25/112 (22%)
Query: 52 EGKFTFSSKSDGKFETTYGKGGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAK 111
+G T + +G F + G G++KGG GD +A G S+V + +P P NA
Sbjct: 414 KGAGTIVATPEGAFVNSTGNSGMSKGGSGDVLA-GMLASLVAQGIP---------PTNAA 463
Query: 112 CLM--------DCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHS 155
C+ DC A H+ E A+L D ++P F K L + HS
Sbjct: 464 CMAVFLHGKAGDCAAEHLSE-----QAMLPTDLIGELPGLFLK--LEQRRHS 508
>gi|124800957|ref|XP_001349565.1| DNA-directed RNA polymerase II 16 kDa subunit, putative [Plasmodium
falciparum 3D7]
gi|3845133|gb|AAC71838.1| DNA-directed RNA polymerase II 16 kDa subunit, putative [Plasmodium
falciparum 3D7]
Length = 132
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 16/121 (13%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLS---ADPTIKIPVSFDKGLLYAKTHSHFTNPQAVK 164
KN KCL CE IL +Q+ L S + I S+D YA + N ++
Sbjct: 19 KNCKCLNLCELQLIL---GDQLRLTSKRNEEAQALIKSSYD----YANKFAAIKNRSSIV 71
Query: 165 GLFQSLSEHG-VTDGEICVIANICPETVEEAYAIVPSLKAKRSRLND-LLKEVLIQLAKF 222
+ +L G + + EI ++ N+ P+T+ EA ++PSL RLND L +L L +
Sbjct: 72 DIRTNLERIGDLHEYEIAMLVNLLPKTILEARYLIPSL----IRLNDETLNSILEHLISY 127
Query: 223 K 223
K
Sbjct: 128 K 128
>gi|70923994|ref|XP_734917.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|70926439|ref|XP_735759.1| DNA-directed RNA polymerase II 16 kDa subunit [Plasmodium chabaudi
chabaudi]
gi|56508101|emb|CAH76309.1| hypothetical protein PC000412.01.0 [Plasmodium chabaudi chabaudi]
gi|56509703|emb|CAH86732.1| DNA-directed RNA polymerase II 16 kDa subunit, putative [Plasmodium
chabaudi chabaudi]
Length = 133
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLS---ADPTIKIPVSFDKGLLYAKTHSHFTNPQAVK 164
+N KCL CE IL +Q+ L S D I SFD YA + N ++
Sbjct: 20 QNCKCLNLCELQLIL---GDQLRLTSKRNEDAQALIRSSFD----YANRFATIKNRSSIV 72
Query: 165 GLFQSLSEHG-VTDGEICVIANICPETVEEAYAIVPSL-KAKRSRLNDLLKEVL 216
+ +L G + + EI ++ N+ P+T+ EA +PSL + LN +L+ ++
Sbjct: 73 DIRTNLERIGELYEYEIAMLVNLLPKTILEARYFIPSLIRLNEETLNSILEHLI 126
>gi|156093884|ref|XP_001612980.1| DNA-directed RNA polymerase II 16 kDa subunit [Plasmodium vivax
Sal-1]
gi|148801854|gb|EDL43253.1| DNA-directed RNA polymerase II 16 kDa subunit, putative [Plasmodium
vivax]
Length = 132
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 57/121 (47%), Gaps = 16/121 (13%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLS---ADPTIKIPVSFDKGLLYAKTHSHFTNPQAVK 164
KN KCL CE IL +Q+ L S + I SFD YA + N ++
Sbjct: 19 KNCKCLNLCELQLIL---GDQLRLTSKRNEEAQALIKSSFD----YANKFATIKNRSSIV 71
Query: 165 GLFQSLSEHG-VTDGEICVIANICPETVEEAYAIVPSLKAKRSRLND-LLKEVLIQLAKF 222
+ +L G + + EI ++ N+ P+TV+EA +PSL RL D L +L L +
Sbjct: 72 DVRTNLERIGELHEYEIAMLVNLLPKTVQEARYFIPSL----IRLGDETLNSILEHLISY 127
Query: 223 K 223
K
Sbjct: 128 K 128
>gi|212546661|ref|XP_002153484.1| polymerase (RNA) II (DNA directed) polypeptide D [Talaromyces
marneffei ATCC 18224]
gi|210065004|gb|EEA19099.1| polymerase (RNA) II (DNA directed) polypeptide D [Talaromyces
marneffei ATCC 18224]
Length = 150
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 141 PVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDG-EICVIANICPETVEEAYAIVP 199
P + K L Y + S F + + +K + + L+ H + E + ++C + EEA +++P
Sbjct: 65 PENLTKTLDYLEVFSRFKDEENIKAVERLLNSHTELEMFERSQLGSLCCDNAEEAKSLIP 124
Query: 200 SLKAKRSRLNDLLKEVLIQLAKFKS 224
SL+ K S ++ L+E+L +L K ++
Sbjct: 125 SLQNKISDID--LQELLDELTKLRN 147
>gi|195450000|ref|XP_002072320.1| GK22783 [Drosophila willistoni]
gi|194168405|gb|EDW83306.1| GK22783 [Drosophila willistoni]
Length = 116
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
++A+ L+ E +L+ + Q SAD + F K Y + F N + + L
Sbjct: 5 ESAETLLISEVHMLLDHRKRQNE--SADEEQEFSEVFMKTYAYTDSFRKFKNKETIILLM 62
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK 204
Q + E+ + N+CPE EEA A++PSL+ +
Sbjct: 63 QK----KLHKFELAALGNLCPEAPEEAKALIPSLEGR 95
>gi|396081878|gb|AFN83492.1| DNA-directed RNA polymerase II fourth largest subunit
[Encephalitozoon romaleae SJ-2008]
Length = 104
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 114 MDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEH 173
M EA ++LEG +E+ AD F L Y + + L + S
Sbjct: 1 MLSEARYLLEGQKERF---RADFRSNASKIFRSTLGYLDEFCRIKDKSVAEDLRTTFSGL 57
Query: 174 GVTDGEICVIANICPETVEEAYAIVPSLKAK 204
G ++ EI ++ ++ P++VEEA ++PSL +K
Sbjct: 58 GFSELEIALLGSLFPQSVEEAKTLIPSLASK 88
>gi|70950532|ref|XP_744582.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56524593|emb|CAH80182.1| hypothetical protein PC000766.03.0 [Plasmodium chabaudi chabaudi]
Length = 116
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLS---ADPTIKIPVSFDKGLLYAKTHSHFTNPQAVK 164
+N KCL CE IL +Q+ L S D I SFD YA + N ++
Sbjct: 3 QNCKCLNLCELQLIL---GDQLRLTSKRNEDAQALIRSSFD----YANRFATIKNRSSIV 55
Query: 165 GLFQSLSEHG-VTDGEICVIANICPETVEEAYAIVPSL-KAKRSRLNDLLKEVL 216
+ +L G + + EI ++ N+ P+T+ EA +PSL + LN +L+ ++
Sbjct: 56 DIRTNLERIGELYEYEIAMLVNLLPKTILEARYFIPSLIRLNEETLNSILEHLI 109
>gi|302688063|ref|XP_003033711.1| hypothetical protein SCHCODRAFT_106619 [Schizophyllum commune H4-8]
gi|300107406|gb|EFI98808.1| hypothetical protein SCHCODRAFT_106619, partial [Schizophyllum
commune H4-8]
Length = 215
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 135 DPTIKIPVSFDKGLLYAKTHSHFT---------NPQAVKGLFQSLSEHGVTDGEICVIAN 185
DPT+ + +S + + +T + + P+ + L +SL +G+T E I N
Sbjct: 59 DPTV-VEISENLRTIEVETIQYLSADYQPTSAQTPEGISKLIKSLEPYGLTKAEKLQIVN 117
Query: 186 ICPETVEEAYAIVPSLKAKRSRLNDLLKEVLIQL 219
+ P + E Y IV L+ RL D +EVL ++
Sbjct: 118 LAPTNIIELYVIVEELE---DRLGDHTEEVLARV 148
>gi|303390270|ref|XP_003073366.1| DNA-directed RNA polymerase II fourth largest subunit
[Encephalitozoon intestinalis ATCC 50506]
gi|303302512|gb|ADM12006.1| DNA-directed RNA polymerase II fourth largest subunit
[Encephalitozoon intestinalis ATCC 50506]
Length = 104
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 114 MDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEH 173
M EA ++LEG +E+ AD F L Y + + L + S
Sbjct: 1 MLAEARYLLEGQKER---FRADFRSNASKIFRSTLGYLDEFCRIKDKSVAEDLRTTFSGL 57
Query: 174 GVTDGEICVIANICPETVEEAYAIVPSLKAK 204
G ++ EI ++ ++ P++VEEA +++PSL +K
Sbjct: 58 GFSEVEIALLGSLFPQSVEEAKSLIPSLASK 88
>gi|68061507|ref|XP_672753.1| DNA-directed RNA polymerase II 16 kDa subunit [Plasmodium berghei
strain ANKA]
gi|68069061|ref|XP_676441.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56490075|emb|CAI01817.1| DNA-directed RNA polymerase II 16 kDa subunit, putative [Plasmodium
berghei]
gi|56496141|emb|CAI00460.1| hypothetical protein PB000968.03.0 [Plasmodium berghei]
Length = 133
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 16/121 (13%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLS---ADPTIKIPVSFDKGLLYAKTHSHFTNPQAVK 164
+N KCL CE IL +Q+ L S D I SFD YA + N ++
Sbjct: 20 QNCKCLNLCELQLIL---GDQLRLTSKRNEDAQALIRSSFD----YANRFATIKNRSSIV 72
Query: 165 GLFQSLSEHG-VTDGEICVIANICPETVEEAYAIVPSLKAKRSRLN-DLLKEVLIQLAKF 222
+ +L G + + EI ++ N+ P+T+ EA +PSL RLN + L +L L +
Sbjct: 73 DIRTNLERIGELYEYEIAMLVNLLPKTILEARYFIPSL----IRLNEETLHSILEHLISY 128
Query: 223 K 223
K
Sbjct: 129 K 129
>gi|158302373|ref|XP_321930.4| AGAP001228-PA [Anopheles gambiae str. PEST]
gi|157012920|gb|EAA01792.4| AGAP001228-PA [Anopheles gambiae str. PEST]
Length = 161
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 144 FDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKA 203
F K Y F N + + + L + + E+ + N+CP + EEA A++PSL+
Sbjct: 80 FHKTYTYTNEFRKFRNKETIASVRSLLMQKKLHKFELAALGNLCPASPEEAKALIPSLEG 139
Query: 204 KRSRLNDLLKEVL 216
+ +D L+++L
Sbjct: 140 RFE--DDELQQIL 150
>gi|347965542|ref|XP_003435782.1| AGAP001228-PB [Anopheles gambiae str. PEST]
gi|333470463|gb|EGK97631.1| AGAP001228-PB [Anopheles gambiae str. PEST]
Length = 139
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 144 FDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKA 203
F K Y F N + + + L + + E+ + N+CP + EEA A++PSL+
Sbjct: 58 FHKTYTYTNEFRKFRNKETIASVRSLLMQKKLHKFELAALGNLCPASPEEAKALIPSLEG 117
Query: 204 KRSRLNDLLKEVL 216
+ +D L+++L
Sbjct: 118 RFE--DDELQQIL 128
>gi|301763419|ref|XP_002917136.1| PREDICTED: mitochondrial import receptor subunit TOM70-like
[Ailuropoda melanoleuca]
Length = 725
Score = 38.1 bits (87), Expect = 2.6, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 36/79 (45%)
Query: 94 EALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKT 153
+AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 305 KALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNR 364
Query: 154 HSHFTNPQAVKGLFQSLSE 172
+PQ +K F S ++
Sbjct: 365 EPLMPSPQFIKSYFSSFTD 383
>gi|221053207|ref|XP_002257978.1| DNA-directed RNA polymerase I subunit [Plasmodium knowlesi strain
H]
gi|193807810|emb|CAQ38515.1| DNA-directed RNA polymerase I subunit, putative [Plasmodium
knowlesi strain H]
Length = 132
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 16/121 (13%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLS---ADPTIKIPVSFDKGLLYAKTHSHFTNPQAVK 164
KN KCL CE IL +Q+ L S + I SFD YA + N ++
Sbjct: 19 KNCKCLNLCELQLIL---GDQLRLTSKRNEEAQTLIKSSFD----YANKFATIKNRSSIV 71
Query: 165 GLFQSLSEHG-VTDGEICVIANICPETVEEAYAIVPSLKAKRSRLND-LLKEVLIQLAKF 222
+ +L G + + EI ++ N+ P+T +EA +PSL RL+D L +L L +
Sbjct: 72 DVRTNLERIGELHEYEIAMLVNLLPKTAQEARYFIPSL----IRLSDETLNSILEHLISY 127
Query: 223 K 223
K
Sbjct: 128 K 128
>gi|353235608|emb|CCA67618.1| hypothetical protein PIIN_01446 [Piriformospora indica DSM 11827]
Length = 207
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 161 QAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAK-RSRLNDLLKEVLIQL 219
+AV L + L ++ +T E I N+CP++V E Y IV ++++ + ++D+LK V +L
Sbjct: 86 EAVAHLTRGLRKYQLTKAEKLQIVNLCPQSVLELYVIVEEMESRFENDVDDILKLVQEKL 145
Query: 220 AK 221
A+
Sbjct: 146 AE 147
>gi|290996786|ref|XP_002680963.1| predicted protein [Naegleria gruberi]
gi|284094585|gb|EFC48219.1| predicted protein [Naegleria gruberi]
Length = 141
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHS---HFTNPQAVK 164
K+ +CL E A +L +E+ + + T I FDK L YA+ A+K
Sbjct: 19 KDRQCLTISEVAQMLSKKKEE---VEQEQTDYINDVFDKSLTYARRFGGGLSVETTMAIK 75
Query: 165 G--------LFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKA-KRSRLNDLLKEV 215
L S + +I +AN+ P EEA ++PSLKA + + +LLK++
Sbjct: 76 SALGRATVTLKDSQERRKLQPFQIAQLANLMPGDAEEAATLIPSLKAFDETEIGNLLKDL 135
>gi|452825468|gb|EME32464.1| DNA-directed RNA polymerase II subunit D [Galdieria sulphuraria]
Length = 150
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 144 FDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDG-EICVIANICPETVEEAYAIVPSLK 202
F K L Y + + ++ + L + D E+ +AN+CP EEA +PSLK
Sbjct: 71 FKKFLEYVERFDRYKGLESATNVRNLLQRYESLDPFEMACLANLCPADAEEAKTTIPSLK 130
Query: 203 AK--RSRLNDLLKEV 215
K S LN LL+++
Sbjct: 131 HKIDDSSLNQLLQDL 145
>gi|328855128|gb|EGG04256.1| hypothetical protein MELLADRAFT_89474 [Melampsora larici-populina
98AG31]
Length = 130
Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 150 YAKTHSHFTNPQAVKGLFQSLS-EHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRL 208
+ + F+ + + Q LS + + E+ +A++CPE EEA +++PSL AK
Sbjct: 55 FVNQFARFSTTDSAQAARQILSKDQTLKPFELAQLASLCPEEAEEAKSLIPSLAAKD--- 111
Query: 209 NDLLKEVLIQLAKFK 223
+D L+ +L +++ K
Sbjct: 112 DDALQAILNEISGLK 126
>gi|145350124|ref|XP_001419467.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|145357498|ref|XP_001422955.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579699|gb|ABO97760.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144583199|gb|ABP01314.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 147
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 144 FDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
F+K L YAK S T+ A + + + G+ D E I+N+ P+ +EA +VPSL+
Sbjct: 64 FEKTLAYAKRFSGNTSSTAAAAIRELHNNSGLHDFEGAAISNLKPQDWDEAKTLVPSLE 122
>gi|302412369|ref|XP_003004017.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261356593|gb|EEY19021.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
Length = 160
Score = 37.0 bits (84), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 146 KGLLYAKTHSHFTNPQAVKGLFQSLSEH-GVTDGEICVIANICPETVEEAYAIVPSLKAK 204
+ L Y S F + V+ + + LS H + E I ++C ET EEA ++PSL+ K
Sbjct: 82 QTLNYLDAFSRFRQKENVEAVERLLSAHKQLAKFERAQIGSLCCETAEEAKTLIPSLQDK 141
Query: 205 RSRLNDLLKEVLIQLAKFKS 224
+ ++ L+E+L +++K +S
Sbjct: 142 IT--DEDLQELLDEISKLQS 159
>gi|346975025|gb|EGY18477.1| hypothetical protein VDAG_08811 [Verticillium dahliae VdLs.17]
Length = 160
Score = 37.0 bits (84), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 146 KGLLYAKTHSHFTNPQAVKGLFQSLSEH-GVTDGEICVIANICPETVEEAYAIVPSLKAK 204
+ L Y S F + V+ + + LS H + E I ++C ET EEA ++PSL+ K
Sbjct: 82 QTLNYLDAFSRFRQKENVEAVERLLSAHKQLAKFERAQIGSLCCETAEEAKTLIPSLQDK 141
Query: 205 RSRLNDLLKEVLIQLAKFKS 224
+ ++ L+E+L +++K +S
Sbjct: 142 IT--DEDLQELLDEISKLQS 159
>gi|126325626|ref|XP_001363876.1| PREDICTED: mitochondrial import receptor subunit TOM70 [Monodelphis
domestica]
Length = 612
Score = 37.0 bits (84), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 193 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 252
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 253 PLMPSPQFIKSYFSSFTDDIIS 274
>gi|365981351|ref|XP_003667509.1| hypothetical protein NDAI_0A01080 [Naumovozyma dairenensis CBS 421]
gi|343766275|emb|CCD22266.1| hypothetical protein NDAI_0A01080 [Naumovozyma dairenensis CBS 421]
Length = 255
Score = 37.0 bits (84), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 148 LLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSR 207
L Y S F + + V + Q L G+ EI + ++ +T +EA +VPSL +K S
Sbjct: 179 LEYLTNFSRFRDQETVSAVIQLLKSTGLHPFEIAQLGSLACDTADEAKTLVPSLTSKIS- 237
Query: 208 LNDLLKEVLIQLAKFKS 224
+D L+ +L +L+ ++
Sbjct: 238 -DDELERILKELSNLET 253
>gi|281354728|gb|EFB30312.1| hypothetical protein PANDA_005313 [Ailuropoda melanoleuca]
Length = 573
Score = 37.0 bits (84), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 154 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 213
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 214 PLMPSPQFIKSYFSSFTDDIIS 235
>gi|115496634|ref|NP_001068796.1| mitochondrial import receptor subunit TOM70 [Bos taurus]
gi|115305042|gb|AAI23445.1| Translocase of outer mitochondrial membrane 70 homolog A (S.
cerevisiae) [Bos taurus]
gi|296491553|tpg|DAA33596.1| TPA: translocase of outer mitochondrial membrane 70 homolog A [Bos
taurus]
gi|300675571|gb|ADK26451.1| translocase of outer mitochondrial membrane 70 [Bos taurus]
Length = 609
Score = 37.0 bits (84), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 190 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 249
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 250 PLMPSPQFIKSYFSSFTDDIIS 271
>gi|426217373|ref|XP_004002928.1| PREDICTED: mitochondrial import receptor subunit TOM70 [Ovis aries]
Length = 609
Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 190 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 249
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 250 PLMPSPQFIKSYFSSFTDDIIS 271
>gi|40788338|dbj|BAA34439.2| KIAA0719 protein [Homo sapiens]
Length = 624
Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 205 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 264
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 265 PLMPSPQFIKSYFSSFTDDIIS 286
>gi|440910700|gb|ELR60464.1| Mitochondrial import receptor subunit TOM70 [Bos grunniens mutus]
Length = 609
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 190 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 249
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 250 PLMPSPQFIKSYFSSFTDDIIS 271
>gi|387019333|gb|AFJ51784.1| Mitochondrial import receptor subunit TOM70 [Crotalus adamanteus]
Length = 588
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 169 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 228
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 229 PLMPSPQFIKSYFSSFTDDIIS 250
>gi|403306109|ref|XP_003943587.1| PREDICTED: mitochondrial import receptor subunit TOM70 [Saimiri
boliviensis boliviensis]
Length = 608
Score = 36.6 bits (83), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 189 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 248
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 249 PLMPSPQFIKSYFSSFTDDIIS 270
>gi|351710135|gb|EHB13054.1| Mitochondrial import receptor subunit TOM70 [Heterocephalus glaber]
Length = 609
Score = 36.6 bits (83), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 70/180 (38%), Gaps = 14/180 (7%)
Query: 7 GKGGGVGGGGKTSLKSIPASLGGKDDNSAKSKRGR---KVQFNTEGLSEGKFTFSSKSDG 63
G G G G + S+ + K+ + K G+ +Q TE +S ++ +
Sbjct: 96 GSGHPEGSGAHLEMNSLDRAQAAKNKGNKYFKAGKYEQAIQCYTEAIS----LCPTEKNV 151
Query: 64 KFETTYGK--GGLTKGGKGDKVANGAKVSV-----VKEALPLELRVEQELPKNAKCLMDC 116
T Y + K +VA +V +AL + ++L +CL D
Sbjct: 152 DLSTFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALFRRAKAHEKLDNKKECLEDV 211
Query: 117 EAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVT 176
A ILEG Q Q ++L AD +K+ Y +PQ +K F S ++ ++
Sbjct: 212 TAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNREPLMPSPQFIKSYFSSFTDDIIS 271
>gi|338716112|ref|XP_001917360.2| PREDICTED: LOW QUALITY PROTEIN: mitochondrial import receptor
subunit TOM70-like [Equus caballus]
Length = 662
Score = 36.6 bits (83), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 243 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 302
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 303 PLMPSPQFIKSYFSSFTDDIIS 324
>gi|332225229|ref|XP_003261782.1| PREDICTED: mitochondrial import receptor subunit TOM70 [Nomascus
leucogenys]
Length = 608
Score = 36.6 bits (83), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 189 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 248
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 249 PLMPSPQFIKSYFSSFTDDIIS 270
>gi|291400784|ref|XP_002716658.1| PREDICTED: translocase of outer mitochondrial membrane 70 homolog
A, partial [Oryctolagus cuniculus]
Length = 623
Score = 36.6 bits (83), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 204 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 263
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 264 PLMPSPQFIKSYFSSFTDDIIS 285
>gi|355725598|gb|AES08607.1| translocase of outer mitochondrial membrane 70-like protein A
[Mustela putorius furo]
Length = 581
Score = 36.6 bits (83), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 205 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 264
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 265 PLMPSPQFIKSYFSSFTDDIIS 286
>gi|54607135|ref|NP_055635.3| mitochondrial import receptor subunit TOM70 [Homo sapiens]
gi|426341399|ref|XP_004036025.1| PREDICTED: mitochondrial import receptor subunit TOM70 [Gorilla
gorilla gorilla]
gi|14285643|sp|O94826.1|TOM70_HUMAN RecName: Full=Mitochondrial import receptor subunit TOM70; AltName:
Full=Mitochondrial precursor proteins import receptor;
AltName: Full=Translocase of outer membrane 70 kDa
subunit
gi|13177706|gb|AAH03633.1| Translocase of outer mitochondrial membrane 70 homolog A (S.
cerevisiae) [Homo sapiens]
gi|31419793|gb|AAH52994.1| Translocase of outer mitochondrial membrane 70 homolog A (S.
cerevisiae) [Homo sapiens]
gi|119600228|gb|EAW79822.1| translocase of outer mitochondrial membrane 70 homolog A (yeast),
isoform CRA_a [Homo sapiens]
gi|119600229|gb|EAW79823.1| translocase of outer mitochondrial membrane 70 homolog A (yeast),
isoform CRA_a [Homo sapiens]
gi|123999829|gb|ABM87423.1| translocase of outer mitochondrial membrane 70 homolog A (S.
cerevisiae) [synthetic construct]
gi|168267528|dbj|BAG09820.1| translocase of outer mitochondrial membrane 70 homolog A [synthetic
construct]
Length = 608
Score = 36.6 bits (83), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 189 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 248
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 249 PLMPSPQFIKSYFSSFTDDIIS 270
>gi|296226401|ref|XP_002758910.1| PREDICTED: mitochondrial import receptor subunit TOM70 [Callithrix
jacchus]
Length = 608
Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 189 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 248
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 249 PLMPSPQFIKSYFSSFTDDIIS 270
>gi|297670504|ref|XP_002813404.1| PREDICTED: mitochondrial import receptor subunit TOM70 [Pongo
abelii]
Length = 608
Score = 36.6 bits (83), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 189 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 248
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 249 PLMPSPQFIKSYFSSFTDDIIS 270
>gi|114588180|ref|XP_526255.2| PREDICTED: mitochondrial import receptor subunit TOM70 isoform 3
[Pan troglodytes]
gi|397502644|ref|XP_003821960.1| PREDICTED: mitochondrial import receptor subunit TOM70 [Pan
paniscus]
gi|410227150|gb|JAA10794.1| translocase of outer mitochondrial membrane 70 homolog A [Pan
troglodytes]
gi|410262170|gb|JAA19051.1| translocase of outer mitochondrial membrane 70 homolog A [Pan
troglodytes]
gi|410297936|gb|JAA27568.1| translocase of outer mitochondrial membrane 70 homolog A [Pan
troglodytes]
gi|410349763|gb|JAA41485.1| translocase of outer mitochondrial membrane 70 homolog A [Pan
troglodytes]
Length = 608
Score = 36.6 bits (83), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 189 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 248
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 249 PLMPSPQFIKSYFSSFTDDIIS 270
>gi|12848607|dbj|BAB28018.1| unnamed protein product [Mus musculus]
Length = 611
Score = 36.6 bits (83), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 72/180 (40%), Gaps = 14/180 (7%)
Query: 7 GKGGGVGGGGKTSLKSIPASLGGKDDNSAKSKRGR---KVQFNTEGLSEGKFTFSSKSDG 63
G G G G + S+ ++ K+ + K G+ +Q TE +S ++ +
Sbjct: 98 GSGHHDGSGDSLEMSSLDSAQAAKNKGNKYFKAGKYEQAIQCYTEAIS----LCPTEKNV 153
Query: 64 KFETTYGK--GGLTKGGKGDKVANGAKVSV-----VKEALPLELRVEQELPKNAKCLMDC 116
T Y + K +VA +V +AL + ++L +CL D
Sbjct: 154 DLSTFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALFRRAKAHEKLDNKKECLEDV 213
Query: 117 EAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVT 176
A ILEG Q + ++L AD +K+ + Y +PQ +K F S ++ ++
Sbjct: 214 TAVCILEGFQNEQSMLLADKVLKLLGKENAKEKYKNREPLMPSPQFIKSYFSSFTDDIIS 273
>gi|410970316|ref|XP_003991631.1| PREDICTED: mitochondrial import receptor subunit TOM70 [Felis
catus]
Length = 609
Score = 36.6 bits (83), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 190 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 249
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 250 PLMPSPQFIKSYFSSFTDDIIS 271
>gi|237837463|ref|XP_002368029.1| DNA-directed RNA polymerase II, putative [Toxoplasma gondii ME49]
gi|211965693|gb|EEB00889.1| DNA-directed RNA polymerase II, putative [Toxoplasma gondii ME49]
gi|221509208|gb|EEE34777.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 185
Score = 36.6 bits (83), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
++AKCL CE IL SA+ + S+D +AK + + L
Sbjct: 72 RSAKCLNLCELQLILSDQLRLPNTRSAEAQGLLKASYDYSTRFAKLRTR----NVIVDLR 127
Query: 168 QSLSEHG-VTDGEICVIANICPETVEEAYAIVPSLK----AKRSRLNDLLK 213
+L G + EI + N+ P++++EA A++P+L + R+ DLL+
Sbjct: 128 NNLEREGDLHQFEIAQLVNLLPKSLDEAKALIPTLNRLPGPRLQRILDLLE 178
>gi|345566765|gb|EGX49707.1| hypothetical protein AOL_s00078g196 [Arthrobotrys oligospora ATCC
24927]
Length = 158
Score = 36.6 bits (83), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDLLKEVLIQ 218
N AV+ L Q E G+ E + +C ET EEA ++PS+ K+S ++ L+E+L +
Sbjct: 94 NVSAVERLLQM--EGGLASFEKSQLGTLCCETSEEAKTLIPSISDKKS--DEDLQELLDE 149
Query: 219 LAKFKS 224
+ KF++
Sbjct: 150 ITKFRT 155
>gi|344294611|ref|XP_003419010.1| PREDICTED: mitochondrial import receptor subunit TOM70 [Loxodonta
africana]
Length = 610
Score = 36.6 bits (83), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 190 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 249
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 250 PLMPSPQFIKSYFSSFTDDIIS 271
>gi|333984640|ref|YP_004513850.1| UvrABC system protein B [Methylomonas methanica MC09]
gi|333808681|gb|AEG01351.1| UvrABC system protein B [Methylomonas methanica MC09]
Length = 697
Score = 36.6 bits (83), Expect = 8.1, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Query: 33 NSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGDKVANGA---KV 89
+ + +R +++ FN E + K F S +D + G GG G + KVA A K
Sbjct: 594 DETERRRAKQIAFNKEHHIQPKTIFKSVTDILEISIPGSGGSIAGARA-KVAEPASEYKA 652
Query: 90 SVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSAD 135
K+A ++E+++ ++AK L EAAH +++Q+ LL A+
Sbjct: 653 MTPKQAAKTLKQLEEKMYRHAKNLEFEEAAH----VRDQIKLLQAE 694
>gi|345795927|ref|XP_535719.3| PREDICTED: mitochondrial import receptor subunit TOM70 [Canis lupus
familiaris]
Length = 609
Score = 36.6 bits (83), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 190 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 249
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 250 PLMPSPQFIKSYFSSFTDDIIS 271
>gi|388454166|ref|NP_001253082.1| mitochondrial import receptor subunit TOM70 [Macaca mulatta]
gi|355559283|gb|EHH16011.1| hypothetical protein EGK_11235 [Macaca mulatta]
gi|380787847|gb|AFE65799.1| mitochondrial import receptor subunit TOM70 [Macaca mulatta]
gi|383408917|gb|AFH27672.1| mitochondrial import receptor subunit TOM70 [Macaca mulatta]
Length = 608
Score = 36.6 bits (83), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 189 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 248
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 249 PLMPSPQFIKSYFSSFTDDIIS 270
>gi|348567011|ref|XP_003469295.1| PREDICTED: mitochondrial import receptor subunit TOM70-like [Cavia
porcellus]
Length = 609
Score = 36.6 bits (83), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 190 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 249
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 250 PLMPSPQFIKSYFSSFTDDIIS 271
>gi|355746369|gb|EHH50983.1| hypothetical protein EGM_10294, partial [Macaca fascicularis]
Length = 600
Score = 36.6 bits (83), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 181 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 240
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 241 PLMPSPQFIKSYFSSFTDDIIS 262
>gi|402858878|ref|XP_003893908.1| PREDICTED: mitochondrial import receptor subunit TOM70 [Papio
anubis]
Length = 608
Score = 36.6 bits (83), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 189 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 248
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 249 PLMPSPQFIKSYFSSFTDDIIS 270
>gi|301118222|ref|XP_002906839.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262108188|gb|EEY66240.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 155
Score = 36.6 bits (83), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 15/122 (12%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+N CL + E A ILE + T ++ ++ T N +V L
Sbjct: 24 RNETCLSNAEVAVILEKQKSDYETQEKQLTNVFQKTYSYVQRFSGTKDPVANQASVTELR 83
Query: 168 QSLS-------------EHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDLLKE 214
++L E+ + + EI ++N+ PE VEEA A++PSL + + D ++E
Sbjct: 84 EALMSLAFQREADGETVEYRLEEFEIACLSNLNPEEVEEAVALIPSLHKRFAE--DEIEE 141
Query: 215 VL 216
+L
Sbjct: 142 IL 143
>gi|194380862|dbj|BAG63999.1| unnamed protein product [Homo sapiens]
Length = 501
Score = 36.2 bits (82), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 82 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 141
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 142 PLMPSPQFIKSYFSSFTDDIIS 163
>gi|348688883|gb|EGZ28697.1| hypothetical protein PHYSODRAFT_552395 [Phytophthora sojae]
Length = 155
Score = 36.2 bits (82), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 15/122 (12%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+N CL + E A ILE + T ++ ++ T N +V L
Sbjct: 24 RNETCLSNAEVAVILEKQKSDYETQEKQLTNVFQKTYSYVQRFSGTKDPVANQASVTELR 83
Query: 168 QSLS-------------EHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDLLKE 214
++L E+ + + EI ++N+ PE VEEA A++PSL + + D ++E
Sbjct: 84 EALMSLAFQREEDGETVEYRLEEFEIACLSNLNPEEVEEAVALIPSLHKRFAE--DEIEE 141
Query: 215 VL 216
+L
Sbjct: 142 IL 143
>gi|67972314|dbj|BAE02499.1| unnamed protein product [Macaca fascicularis]
Length = 590
Score = 36.2 bits (82), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 171 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 230
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 231 PLMPSPQFIKSYFSSFTDDIIS 252
>gi|390602924|gb|EIN12316.1| hypothetical protein PUNSTDRAFT_124232 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 215
Score = 36.2 bits (82), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 146 KGLLYAKTHSHFT---NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
+ + Y H T PQ + L + L+ +G+T E +AN+ P T E Y +V L+
Sbjct: 67 EAIQYLDAPYHPTARQTPQGITTLLKGLAPYGLTKAEKLQMANLAPTTAVELYTVVEELE 126
Query: 203 AK--RSRLNDLLKEV 215
+ +++N++L+ V
Sbjct: 127 DRLTEAQINEVLELV 141
>gi|431901666|gb|ELK08543.1| Mitochondrial import receptor subunit TOM70 [Pteropus alecto]
Length = 609
Score = 36.2 bits (82), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 190 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 249
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 250 PLMPSPQFIKSYFSSFTDDIIS 271
>gi|47058988|ref|NP_997684.1| mitochondrial import receptor subunit TOM70 [Rattus norvegicus]
gi|81911805|sp|Q75Q39.1|TOM70_RAT RecName: Full=Mitochondrial import receptor subunit TOM70; AltName:
Full=Mitochondrial precursor proteins import receptor;
AltName: Full=Translocase of outer membrane 70 kDa
subunit
gi|42733539|dbj|BAD11366.1| TOM70 [Rattus norvegicus]
gi|68534716|gb|AAH98640.1| Translocase of outer mitochondrial membrane 70 homolog A (S.
cerevisiae) [Rattus norvegicus]
Length = 610
Score = 36.2 bits (82), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q + ++L AD +K+ + Y
Sbjct: 191 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNEQSMLLADKVLKLLGKENAKEKYKNRE 250
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 251 PLMPSPQFIKSYFSSFTDDIIS 272
>gi|417411224|gb|JAA52057.1| Putative translocase of outer mitochondrial membrane complex
subunit, partial [Desmodus rotundus]
Length = 500
Score = 36.2 bits (82), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 81 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 140
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 141 PLMPSPQFIKSYFSSFTDDIIS 162
>gi|395821344|ref|XP_003784004.1| PREDICTED: mitochondrial import receptor subunit TOM70 [Otolemur
garnettii]
Length = 609
Score = 36.2 bits (82), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 190 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 249
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 250 PLMPSPQFIKSYFSSFTDDIIS 271
>gi|221488711|gb|EEE26925.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 185
Score = 36.2 bits (82), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
++AKCL CE IL SA+ + S+D +AK + + L
Sbjct: 72 RSAKCLNLCELQLILSDQLRLPNTRSAEAQGLLKASYDYSTRFAKLRTR----NVIVDLR 127
Query: 168 QSLSEHG-VTDGEICVIANICPETVEEAYAIVPSLK----AKRSRLNDLLK 213
+L G + EI + N+ P++++EA A++P+L + R+ DLL+
Sbjct: 128 NNLEREGDLHQFEIAQLVNLLPKSLDEAKALIPTLNRLPGPRLQRILDLLE 178
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.311 0.132 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,681,772,553
Number of Sequences: 23463169
Number of extensions: 157445863
Number of successful extensions: 1042464
Number of sequences better than 100.0: 784
Number of HSP's better than 100.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 568
Number of HSP's that attempted gapping in prelim test: 1028878
Number of HSP's gapped (non-prelim): 11974
length of query: 225
length of database: 8,064,228,071
effective HSP length: 137
effective length of query: 88
effective length of database: 9,144,741,214
effective search space: 804737226832
effective search space used: 804737226832
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 74 (33.1 bits)