Query 027312
Match_columns 225
No_of_seqs 125 out of 209
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 13:09:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027312.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027312hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_D DNA-directed RNA polyme 100.0 8.2E-42 2.8E-46 278.3 11.8 129 91-224 4-132 (135)
2 2c35_A Human RPB4, DNA-directe 100.0 7E-38 2.4E-42 259.1 14.0 132 88-224 18-149 (152)
3 3hou_D DNA-directed RNA polyme 100.0 1.5E-32 5.3E-37 238.4 13.1 132 91-224 18-219 (221)
4 1y14_A B32, RPB4, DNA-directed 100.0 1.1E-28 3.6E-33 210.7 11.0 85 138-224 101-185 (187)
5 1go3_F DNA-directed RNA polyme 99.9 4.2E-28 1.4E-32 190.4 8.7 106 102-223 2-107 (107)
6 4ayb_F DNA-directed RNA polyme 99.9 7.6E-27 2.6E-31 184.7 -1.5 106 109-225 8-113 (113)
7 3ayh_A DNA-directed RNA polyme 99.8 6E-21 2.1E-25 154.8 5.3 113 108-222 13-134 (136)
8 2ckz_A DNA-directed RNA polyme 99.7 3.1E-19 1E-23 149.1 3.5 113 109-223 7-161 (161)
9 4adn_A FAR1; antibiotic resist 77.1 5.3 0.00018 34.7 6.5 72 141-222 20-91 (222)
10 2lky_A Uncharacterized protein 60.9 15 0.00052 28.8 5.4 82 138-221 4-90 (112)
11 2kvc_A Putative uncharacterize 56.4 27 0.00091 26.9 6.0 79 140-220 4-87 (103)
12 3ol3_A Putative uncharacterize 49.3 60 0.0021 25.1 7.0 81 138-220 7-96 (107)
13 3mva_O Transcription terminati 44.7 16 0.00054 32.2 3.5 56 160-216 48-107 (343)
14 1jw2_A Hemolysin expression mo 38.8 16 0.00056 26.5 2.2 32 148-180 9-40 (72)
15 2zxy_A Cytochrome C552, cytoch 34.2 34 0.0012 22.6 3.2 26 196-223 59-87 (87)
16 1wud_A ATP-dependent DNA helic 31.9 27 0.00091 25.2 2.4 48 174-224 37-84 (89)
17 2jns_A Bromodomain-containing 31.8 30 0.001 25.3 2.7 34 185-221 14-47 (90)
18 3p04_A Uncharacterized BCR; SE 31.8 19 0.00066 26.7 1.6 39 183-221 7-52 (87)
19 1e91_A Paired amphipathic heli 30.2 21 0.00073 26.0 1.6 38 187-224 3-40 (85)
20 1no1_A G39P, replisome organiz 30.1 1.7E+02 0.0059 22.9 7.0 84 114-203 2-92 (126)
21 1yse_A DNA-binding protein SAT 29.8 38 0.0013 27.4 3.2 56 140-195 4-60 (141)
22 2xv9_A ABA-1A1 repeat UNIT; li 27.5 78 0.0027 25.2 4.6 112 98-221 6-123 (134)
23 2yb5_A FUSC, putative fusidic 27.4 18 0.00062 31.1 0.9 27 144-171 16-42 (215)
24 2h5n_A Hypothetical protein PG 25.8 1.5E+02 0.0051 22.6 5.9 12 208-219 80-91 (133)
25 2dgz_A Werner syndrome protein 25.5 47 0.0016 25.3 2.9 45 175-223 47-91 (113)
26 1g1e_B SIN3A; four-helix bundl 25.0 31 0.0011 25.3 1.7 41 184-224 3-43 (89)
27 1w2l_A Cytochrome oxidase subu 24.7 47 0.0016 22.6 2.6 25 197-223 75-99 (99)
28 4epz_A Transcription anti-term 24.7 62 0.0021 26.8 3.6 31 191-223 121-151 (162)
29 2czy_A Paired amphipathic heli 23.7 66 0.0022 22.8 3.2 37 188-224 1-37 (77)
30 1x57_A Endothelial differentia 23.2 1.1E+02 0.0039 20.7 4.4 52 162-219 14-65 (91)
31 1cno_A Cytochrome C552; electr 23.2 46 0.0016 22.5 2.3 26 197-224 59-84 (87)
32 2f05_A Paired amphipathic heli 23.0 34 0.0012 26.1 1.6 38 187-224 3-40 (105)
33 3lqv_P Splicing factor 3B subu 22.5 49 0.0017 21.4 2.0 14 203-216 19-32 (39)
34 2zon_G Cytochrome C551; nitrit 22.0 72 0.0024 21.4 3.1 26 198-224 62-87 (87)
35 3bos_A Putative DNA replicatio 22.0 1.2E+02 0.0043 23.2 4.8 64 154-217 171-241 (242)
36 3i5g_C Myosin catalytic light 22.0 59 0.002 24.8 2.9 11 189-199 118-128 (159)
37 2k9n_A MYB24; R2R3 domain, DNA 21.7 2.3E+02 0.0079 20.5 6.1 60 160-222 6-71 (107)
38 3i5g_B Myosin regulatory light 21.6 69 0.0024 24.2 3.2 16 109-124 29-44 (153)
39 1wgx_A KIAA1903 protein; MYB D 21.5 1.2E+02 0.0041 21.7 4.2 44 160-203 13-58 (73)
40 2c1d_B SOXX; sulfur oxidation, 21.4 53 0.0018 24.4 2.4 27 196-224 111-137 (137)
41 1f1f_A Cytochrome C6; heme, pr 21.2 67 0.0023 21.3 2.8 25 197-223 61-85 (89)
42 3nso_A Protein S100-A3; EF-han 21.1 80 0.0028 23.0 3.4 33 188-220 49-83 (101)
43 1r8s_E ARNO; protein transport 21.0 2.4E+02 0.0083 23.5 6.7 72 148-221 78-191 (203)
44 3hh0_A Transcriptional regulat 20.6 2.1E+02 0.0073 22.1 6.0 40 160-199 45-86 (146)
45 3bs3_A Putative DNA-binding pr 20.1 1.2E+02 0.004 19.5 3.7 49 165-219 14-62 (76)
46 2ef8_A C.ECOT38IS, putative tr 20.1 1.8E+02 0.0062 18.9 4.8 53 163-221 12-64 (84)
47 1dgn_A Iceberg (protease inhib 20.1 1.3E+02 0.0046 21.6 4.3 59 160-221 18-77 (89)
No 1
>3h0g_D DNA-directed RNA polymerase II subunit RPB4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.2e-42 Score=278.28 Aligned_cols=129 Identities=22% Similarity=0.297 Sum_probs=118.6
Q ss_pred cccccCccccccCcccccccccccHHHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 027312 91 VVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSL 170 (225)
Q Consensus 91 ~~~eE~aaeLkLG~eF~~nakcLsnsEV~~ILe~~~e~~~~~s~d~~~~~s~Vf~KTleYl~rFSk~k~~esv~~VrelL 170 (225)
+++||||++|+||+||+ |++|||||||++||+.++++++. ...+..+++.||+||++|+++|++|++++++.+||++|
T Consensus 4 ~~~ee~a~~L~lg~eF~-~a~~Ls~sEv~~lL~~~~~~r~~-~~~~~~~~~~v~~kTl~Yl~~Fsk~~~~e~~~~v~~lL 81 (135)
T 3h0g_D 4 AIFEEDAAQLKLGPEFE-NEDMLTVSEAKILIETVLAQRAR-ETNGEIPMTDVMKKTVAYFNVFARFKTAEATYACERIL 81 (135)
T ss_dssp --CCCCCTTTCSCHHHH-HSCBCCHHHHHHHHHHHHHHHHT-TCCSCCCCTTHHHHHHHHHHTTCTTCSHHHHHHHHHHC
T ss_pred hHHHHhHHhhCCCHhhc-CcccccHHHHHHHHHHHHHHHHh-cccCCcchhHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 67999999999999998 99999999999999999887642 12345678899999999999999999999999999999
Q ss_pred hhCCCCchhhhhhhccCCCCHHHHHHhhccccccCCCCHHHHHHHHHHHHhhhc
Q 027312 171 SEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDLLKEVLIQLAKFKS 224 (225)
Q Consensus 171 ~~~~L~kfEiAqLaNL~PeT~eEAkaLIPSLk~K~~~~de~Lq~ILd~Lsk~r~ 224 (225)
.. +||+||+|||+||||+|+||||+|||||++| ++|++|++||++|++||.
T Consensus 82 ~~-~L~~fEia~L~NL~P~t~dEak~LIpsL~~r--~~de~L~~IL~~l~~~r~ 132 (135)
T 3h0g_D 82 GN-RFHKFERAQLGTLCCEDAEEARTLIPSLANK--IDDQNLQGILDELSTLRK 132 (135)
T ss_dssp CC-CSCHHHHHHHHHHCCCCHHHHHHHCGGGTTT--SCSHHHHHHHHHHHHHTT
T ss_pred Hh-cCCHHHHHHHccCCCCCHHHHHHHHHHhccc--CCHHHHHHHHHHHHHHhc
Confidence 99 9999999999999999999999999999987 899999999999999985
No 2
>2c35_A Human RPB4, DNA-directed RNA polymerase II 16 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: a.60.8.2
Probab=100.00 E-value=7e-38 Score=259.15 Aligned_cols=132 Identities=27% Similarity=0.372 Sum_probs=118.7
Q ss_pred CcccccccCccccccCcccccccccccHHHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 027312 88 KVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167 (225)
Q Consensus 88 k~~~~~eE~aaeLkLG~eF~~nakcLsnsEV~~ILe~~~e~~~~~s~d~~~~~s~Vf~KTleYl~rFSk~k~~esv~~Vr 167 (225)
+..+.+||||++|+||++|. |++|||||||+.||++++.+.. +.++..++++++++|++||++|++|++++++++|+
T Consensus 18 ~~~~~~ee~a~~l~~gkef~-~~~~Lt~sEV~~lL~~~~~~~~--~~~~~~els~v~~kTl~Yl~~F~k~k~~e~~~~l~ 94 (152)
T 2c35_A 18 PRAGDVEEDASQLIFPKEFE-TAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 94 (152)
T ss_dssp ------CCBGGGTBCCSSSS-SCEECCHHHHHHHHHHHHHHHH--SSCSSCCCCHHHHHHHHHHHHTCSCCSHHHHHHHH
T ss_pred CCCCCccccHHHHhcchhhc-ccccccHHHHHHHHHHHHHhhc--ccccccchHHHHHHHHHHHHHccCCCCHHHHHHHH
Confidence 55677999999999999998 9999999999999999987653 34556788999999999999999999999999999
Q ss_pred HHhhhCCCCchhhhhhhccCCCCHHHHHHhhccccccCCCCHHHHHHHHHHHHhhhc
Q 027312 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDLLKEVLIQLAKFKS 224 (225)
Q Consensus 168 elL~~~~L~kfEiAqLaNL~PeT~eEAkaLIPSLk~K~~~~de~Lq~ILd~Lsk~r~ 224 (225)
++|..++||+||+|+|+||||+|+||||+|||||+.| ++|++|++||++|++||.
T Consensus 95 e~L~~~~L~~~E~a~L~NL~P~t~dEar~lipsl~~r--~sdEeLe~ILd~l~k~r~ 149 (152)
T 2c35_A 95 SLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR--FEDEELQQILDDIQTKRS 149 (152)
T ss_dssp HHHHTSSCCHHHHHHHHHHCCSSHHHHHHHCGGGTTT--SCHHHHHHHHHHHHHHCC
T ss_pred HHHHhcCCCHHHHHHhccCCCCCHHHHHHHHHhhccC--CCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999876 999999999999999986
No 3
>3hou_D DNA-directed RNA polymerase II subunit RPB4; RNA polymerase II, metal-binding, transcription bubble; HET: BRU; 3.20A {Saccharomyces cerevisiae} PDB: 1nt9_D 1y1w_D 1y1y_D 1y77_D* 2b63_D* 2b8k_D 2ja5_D* 2ja6_D* 2ja7_D* 2ja8_D* 2r7z_D 2r92_D 2r93_D 1y1v_D* 3fki_D 3h3v_E 2vum_D* 3hov_D* 3how_D* 3hox_D* ...
Probab=99.98 E-value=1.5e-32 Score=238.38 Aligned_cols=132 Identities=23% Similarity=0.315 Sum_probs=113.3
Q ss_pred cccccCccccccCcccc----------cccccccHHHHHHHHHHHH-HHhhh--hc------------------------
Q 027312 91 VVKEALPLELRVEQELP----------KNAKCLMDCEAAHILEGIQ-EQMAL--LS------------------------ 133 (225)
Q Consensus 91 ~~~eE~aaeLkLG~eF~----------~nakcLsnsEV~~ILe~~~-e~~~~--~s------------------------ 133 (225)
.++||+||.|+|||||+ +...+|+++|+++|+.... ++++. .+
T Consensus 18 ~~~eenaa~l~lg~efql~q~~~~g~~~~lialnlsearl~i~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (221)
T 3hou_D 18 VEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIKEALVERRRAFKRSQKKHKKKHLKHENANDETTAVEDE 97 (221)
T ss_dssp CCCCCCCSSSCCCGGGCSEEECTTSCEEECCBCCTTHHHHHHHHHHHHHHHHHHHTTCC---------------------
T ss_pred ccchhhhHHhhcCcccceeecccCCchhHhHhhhhHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccc
Confidence 57999999999999998 4667999999999996532 21110 00
Q ss_pred -----------CCC----------------------CCCchHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhCCCCchhh
Q 027312 134 -----------ADP----------------------TIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEI 180 (225)
Q Consensus 134 -----------~d~----------------------~~~~s~Vf~KTleYl~rFSk~k~~esv~~VrelL~~~~L~kfEi 180 (225)
.+. ....+.||+|||+||++|++|++++++..||++|..++||+||+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~~~~~~g~~seVf~KTLdYl~rFSKfkn~EAv~aVrELL~~~gLheFEi 177 (221)
T 3hou_D 98 DDDLDEDDVNADDDDFMHSETREKELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEV 177 (221)
T ss_dssp --------------------CTHHHHHHHHHHHHHHSCSCCHHHHHHHHHHHHSCSCCCHHHHHHHHHHHTTSCCCHHHH
T ss_pred cccccccccccccchhhhccchHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCChHHh
Confidence 000 11457899999999999999999999999999999999999999
Q ss_pred hhhhccCCCCHHHHHHhhccccccCCCCHHHHHHHHHHHHhhhc
Q 027312 181 CVIANICPETVEEAYAIVPSLKAKRSRLNDLLKEVLIQLAKFKS 224 (225)
Q Consensus 181 AqLaNL~PeT~eEAkaLIPSLk~K~~~~de~Lq~ILd~Lsk~r~ 224 (225)
|+||||||+|+||||+|||||+.+ +++++|++||++|++||.
T Consensus 178 AqLANLcPeTaDEARALIPSL~~k--~sDEeLqeILdeLskyR~ 219 (221)
T 3hou_D 178 AQLGSLACDTADEAKTLIPSLNNK--ISDDELERILKELSNLET 219 (221)
T ss_dssp HHHHHSCCCSHHHHHHHCTTCTTS--SCHHHHHHHHHHHHHHSC
T ss_pred heecccCCCCHHHHHHHHHhhccc--CCHHHHHHHHHHHHHhhc
Confidence 999999999999999999999986 899999999999999984
No 4
>1y14_A B32, RPB4, DNA-directed RNA polymerase II 32 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: a.60.8.2
Probab=99.95 E-value=1.1e-28 Score=210.74 Aligned_cols=85 Identities=22% Similarity=0.373 Sum_probs=81.9
Q ss_pred CCchHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhCCCCchhhhhhhccCCCCHHHHHHhhccccccCCCCHHHHHHHHH
Q 027312 138 IKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDLLKEVLI 217 (225)
Q Consensus 138 ~~~s~Vf~KTleYl~rFSk~k~~esv~~VrelL~~~~L~kfEiAqLaNL~PeT~eEAkaLIPSLk~K~~~~de~Lq~ILd 217 (225)
.+++++|++||+||++|++|++++++++|+++|..++||+||+|+|+||||+|++|||+|||||+.+ +++++|++||+
T Consensus 101 ~~ls~v~~KTLeYl~rFsk~kn~Esa~elre~L~~~kL~efE~aqLaNL~PeTadEaraLIpSle~r--lsdEeLeeILd 178 (187)
T 1y14_A 101 GGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNNK--ISDDELERILK 178 (187)
T ss_dssp CSCCHHHHHHHHHHHHHCSCCSHHHHHHHHHHHHTTTCCHHHHHHHHHSCCSSHHHHHHHSGGGTTT--SCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCCHHHHHHcCcCCCCCHHHHHHHHHhhccC--CCHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999999999999999999876 99999999999
Q ss_pred HHHhhhc
Q 027312 218 QLAKFKS 224 (225)
Q Consensus 218 ~Lsk~r~ 224 (225)
+|++||.
T Consensus 179 ~L~k~r~ 185 (187)
T 1y14_A 179 ELSNLET 185 (187)
T ss_dssp HHHHHCC
T ss_pred HHHHhhc
Confidence 9999985
No 5
>1go3_F DNA-directed RNA polymerase subunit F; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: a.60.8.2
Probab=99.95 E-value=4.2e-28 Score=190.44 Aligned_cols=106 Identities=19% Similarity=0.258 Sum_probs=95.3
Q ss_pred cCcccccccccccHHHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhCCCCchhhh
Q 027312 102 VEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEIC 181 (225)
Q Consensus 102 LG~eF~~nakcLsnsEV~~ILe~~~e~~~~~s~d~~~~~s~Vf~KTleYl~rFSk~k~~esv~~VrelL~~~~L~kfEiA 181 (225)
+|.+|. +.+|||+|||+.||+++.+. .++++++++|++|+++|++| +++.+.++++.|.+.+||+|++|
T Consensus 2 i~kei~-~~~~lt~sEa~~iL~~~~~~---------~e~s~~~~ktl~y~~kFsk~-~~e~a~~l~e~L~~~~l~e~~a~ 70 (107)
T 1go3_F 2 IGKKIL-GERYVTVSEAAEIMYNRAQI---------GELSYEQGCALDYLQKFAKL-DKEEAKKLVEELISLGIDEKTAV 70 (107)
T ss_dssp CSSEEE-EEEEECHHHHHHHHHHHHHH---------SCCCHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCCHHHHH
T ss_pred chHHHh-cccccCHHHHHHHHHHHHhc---------ccccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhCCCCHHHHH
Confidence 466887 99999999999999988653 35779999999999999999 68888888888878899999999
Q ss_pred hhhccCCCCHHHHHHhhccccccCCCCHHHHHHHHHHHHhhh
Q 027312 182 VIANICPETVEEAYAIVPSLKAKRSRLNDLLKEVLIQLAKFK 223 (225)
Q Consensus 182 qLaNL~PeT~eEAkaLIPSLk~K~~~~de~Lq~ILd~Lsk~r 223 (225)
+|+||||+|+||||+||||+. + +++|++||++|++||
T Consensus 71 ~I~nl~P~t~dElraii~~~~----~-~eel~~ILd~l~k~~ 107 (107)
T 1go3_F 71 KIADILPEDLDDLRAIYYKRE----L-PENAEEILEIVRKYI 107 (107)
T ss_dssp HHHHHCCCSHHHHHHHSTTSC----C-CTTHHHHHHHHTTCC
T ss_pred HHHHhCCCCHHHHHHHHhccc----C-cHHHHHHHHHHHHcC
Confidence 999999999999999999974 4 999999999999986
No 6
>4ayb_F DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_F 2y0s_F 2waq_F 4b1o_F 4b1p_U 2pmz_F 3hkz_F
Probab=99.91 E-value=7.6e-27 Score=184.70 Aligned_cols=106 Identities=13% Similarity=0.195 Sum_probs=88.4
Q ss_pred ccccccHHHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhCCCCchhhhhhhccCC
Q 027312 109 NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICP 188 (225)
Q Consensus 109 nakcLsnsEV~~ILe~~~e~~~~~s~d~~~~~s~Vf~KTleYl~rFSk~k~~esv~~VrelL~~~~L~kfEiAqLaNL~P 188 (225)
+.+.++++||+.||..+ .+..++++++++||+|+++|++| +++.+.++++.|...++++||+|+|+||||
T Consensus 8 ~e~~it~~eakeiL~~~---------~~~~~~s~~~~ktl~y~~~Fsk~-~~e~a~~l~e~L~~~~l~~~~~a~IanL~P 77 (113)
T 4ayb_F 8 EEHYIPYSVAKKLLSDV---------IKSGSSSNLLQRTYDYLNSVEKC-DAESAQKVVEELSSIISREDVRAVLASICP 77 (113)
T ss_dssp EEEEECTTGGGGTTTTT---------SSSSCCCTTHHHHHHHTTTTCSS-CHHHHHHHHHHHHTTCCCHHHHHHHHHHCC
T ss_pred cccccCHHHHHHHHHHH---------HhcccccHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 45689999999999743 23345678999999999999999 677888888888888999999999999999
Q ss_pred CCHHHHHHhhccccccCCCCHHHHHHHHHHHHhhhcC
Q 027312 189 ETVEEAYAIVPSLKAKRSRLNDLLKEVLIQLAKFKST 225 (225)
Q Consensus 189 eT~eEAkaLIPSLk~K~~~~de~Lq~ILd~Lsk~r~~ 225 (225)
+|+||||+||||++++ .+++++|++||++|++|.++
T Consensus 78 ~~~dElrali~s~e~~-~~~deeL~~IL~~l~ky~~s 113 (113)
T 4ayb_F 78 ITPDEVRSILIMDSNR-TYTSEDIQKIIDIIRKYIKS 113 (113)
T ss_dssp CSSCCCCTTTTTTCCC-CCCCTHHHHHHHHC------
T ss_pred CCHHHHHHHHHhhccC-CCCHHHHHHHHHHHHHHhcC
Confidence 9999999999998765 78999999999999999875
No 7
>3ayh_A DNA-directed RNA polymerase III subunit RPC9; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=99.82 E-value=6e-21 Score=154.84 Aligned_cols=113 Identities=15% Similarity=0.150 Sum_probs=97.2
Q ss_pred cccccccHHHHHHHHHHHHHHhhhh--cCC-----CCCCchHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhhhCCCCch
Q 027312 108 KNAKCLMDCEAAHILEGIQEQMALL--SAD-----PTIKIPVSFDKGLLYAKTH--SHFTNPQAVKGLFQSLSEHGVTDG 178 (225)
Q Consensus 108 ~nakcLsnsEV~~ILe~~~e~~~~~--s~d-----~~~~~s~Vf~KTleYl~rF--Sk~k~~esv~~VrelL~~~~L~kf 178 (225)
.++.+|||+||..+|++++.+.... ... ...+++.|+++|++|+++| +.+++++++.++++.|..++|+++
T Consensus 13 ~~~a~LsN~EVl~~L~~~~~~~~~~~~~~~~~~~~~~~~l~ti~~e~l~YL~~~p~~~~q~~e~i~~l~~~L~~~~Ltk~ 92 (136)
T 3ayh_A 13 ARDAYLTNAEVFFHLKEMENEQNARTQERGAAQALVCENLRTIQFEILKYLSSQGNCEGLTKERFLDCIAIFNEFELTKA 92 (136)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHHHHHHGGGGCCCCHHHHHHHHHHHHHHHTTTCCTTCCHHHHHHHHHTTTTTCCCHH
T ss_pred cccccccHHHHHHHHHHHHhhhcccccccCCccccccchHHHHHHHHHHHHHhCCCccccCHHHHHHHHHHHHhcCCCHH
Confidence 3678999999999999987643210 011 1256889999999999998 445789999999999999999999
Q ss_pred hhhhhhccCCCCHHHHHHhhccccccCCCCHHHHHHHHHHHHhh
Q 027312 179 EICVIANICPETVEEAYAIVPSLKAKRSRLNDLLKEVLIQLAKF 222 (225)
Q Consensus 179 EiAqLaNL~PeT~eEAkaLIPSLk~K~~~~de~Lq~ILd~Lsk~ 222 (225)
|++||+||||.|+.|+++||+.+++| |+||++++||++|+.+
T Consensus 93 E~LqivNl~P~t~vel~~iIEe~e~R--fsee~ie~IL~~i~~~ 134 (136)
T 3ayh_A 93 EILVILNNKPSSVPELYACIEGIEER--FKEEDIFKLVEKINTT 134 (136)
T ss_dssp HHHHHHHHCCCSHHHHHHHSTTHHHH--HTTTTHHHHHHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHHhcccC--CCHHHHHHHHHHHHHh
Confidence 99999999999999999999999987 9999999999999875
No 8
>2ckz_A DNA-directed RNA polymerase III 18 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=99.75 E-value=3.1e-19 Score=149.06 Aligned_cols=113 Identities=15% Similarity=0.180 Sum_probs=33.1
Q ss_pred ccccccHHHHHHHHHHHHHHhhh---------------hcCC--CCCCchHHHHHHHHHHHhcCC---------------
Q 027312 109 NAKCLMDCEAAHILEGIQEQMAL---------------LSAD--PTIKIPVSFDKGLLYAKTHSH--------------- 156 (225)
Q Consensus 109 nakcLsnsEV~~ILe~~~e~~~~---------------~s~d--~~~~~s~Vf~KTleYl~rFSk--------------- 156 (225)
+..+|||.||..+|+.+..+..- .... +..+++.|++.|++||.++.+
T Consensus 7 ~~a~LSN~EVl~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ti~~e~~~YL~~~p~~~~~~~~~~~~~~~~ 86 (161)
T 2ckz_A 7 RNAFLSDYEVLKFLTDLEKKHLWDQKSLAALKKSRSKGKQNRPYNHPELQGITRNVVNYLSINKNFINQEDEGEERESSG 86 (161)
T ss_dssp EEEEECHHHHHHHHHHHHHHTTCSHHHHHCC----------CCCCCHHHHHHHHHHHHHHTC------------------
T ss_pred hhhhhhHHHHHHHHHHhhhhccccccchhhhhcccccccccCCCCCccHHHHHHHHHHHHHhCCcccccccccccccccc
Confidence 56799999999999998765310 0011 224578899999999999987
Q ss_pred ----------CCCHHHHHHHHHHhhhCCCCchhhhhhhccCCCCHHHHHHhhccccccCCCCHHHHHHHHHHHHhhh
Q 027312 157 ----------FTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDLLKEVLIQLAKFK 223 (225)
Q Consensus 157 ----------~k~~esv~~VrelL~~~~L~kfEiAqLaNL~PeT~eEAkaLIPSLk~K~~~~de~Lq~ILd~Lsk~r 223 (225)
..+++++..+++.|..++|+++|++||+||||.+++|+++||+.+++| |+|+++++||++|+.++
T Consensus 87 ~~~~~~~~~~~~~~e~i~~l~~~L~~~~Ltk~E~lqivNl~P~s~vel~~iIEe~e~R--fsee~ie~IL~ii~~~~ 161 (161)
T 2ckz_A 87 AKDAEKSGISKMSDESFAELMTKLNSFKLFKAEKLQIVNQLPANMVHLYSIVEECDAR--FDEKTIEEMLEIISAYA 161 (161)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred ccccccccccccCHHHHHHHHHHHHhcCCCHHHHHHHhccCCCCHHHHHHHHHhcccC--CCHHHHHHHHHHHHHhC
Confidence 356889999999999999999999999999999999999999999886 99999999999998764
No 9
>4adn_A FAR1; antibiotic resistance; 1.65A {Staphylococcus aureus} PDB: 4ado_A
Probab=77.13 E-value=5.3 Score=34.67 Aligned_cols=72 Identities=11% Similarity=0.038 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhCCCCchhhhhhhccCCCCHHHHHHhhccccccCCCCHHHHHHHHHHHH
Q 027312 141 PVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDLLKEVLIQLA 220 (225)
Q Consensus 141 s~Vf~KTleYl~rFSk~k~~esv~~VrelL~~~~L~kfEiAqLaNL~PeT~eEAkaLIPSLk~K~~~~de~Lq~ILd~Ls 220 (225)
+.+=+++.+-++.+....++..+++|+.+... .|.+++|+-.+|.+.|+..+... +++.++.+.+|+.|.
T Consensus 20 N~IK~qv~~L~~a~~tvnD~~vi~avk~~~~~---------kI~~~f~~~~~eq~~lL~~i~~~-~lt~~~~e~~L~~Lk 89 (222)
T 4adn_A 20 NYIRSVILRLKNVYKTVNDKETVKVIQSETYN---------DINEIFGHIDDDIEESLKVLMNI-RLSNKEIEAILNKFL 89 (222)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------HHHTTCSSCCHHHHHHHHHHTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHH---------HHHHHcccCCHHHHHHHHHHhcc-cCCHHHHHHHHHHHH
Confidence 44556666777778888899999988876542 37788899999999999877764 468999999999998
Q ss_pred hh
Q 027312 221 KF 222 (225)
Q Consensus 221 k~ 222 (225)
.|
T Consensus 90 ~y 91 (222)
T 4adn_A 90 EY 91 (222)
T ss_dssp TT
T ss_pred HH
Confidence 76
No 10
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=60.94 E-value=15 Score=28.75 Aligned_cols=82 Identities=13% Similarity=0.035 Sum_probs=56.2
Q ss_pred CCchHHHHHHHHHHHh-cCCCCCHHHHHHHHHHhhhCCCCchhhhhhhccC----CCCHHHHHHhhccccccCCCCHHHH
Q 027312 138 IKIPVSFDKGLLYAKT-HSHFTNPQAVKGLFQSLSEHGVTDGEICVIANIC----PETVEEAYAIVPSLKAKRSRLNDLL 212 (225)
Q Consensus 138 ~~~s~Vf~KTleYl~r-FSk~k~~esv~~VrelL~~~~L~kfEiAqLaNL~----PeT~eEAkaLIPSLk~K~~~~de~L 212 (225)
..++..+.+.+++|+. |-.-=.+..---+..+|.+ .|++.|+.+++... +-|.++++.+|--+... .-++++|
T Consensus 4 ~~~~~~l~siv~WLRAGYP~GVP~~Dy~PLLALL~r-~Ltdeev~~Va~~L~~~~~i~~~dI~~~I~~vt~~-~Ps~eDI 81 (112)
T 2lky_A 4 SMVNAFLAKIAAWLNAGYPEGVPGPDRVPLLALLTR-RLTNDEIKAIAEDLEKRAHFDHIDIGVLITQMTDE-MPREEDI 81 (112)
T ss_dssp SCSCHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHTT-TCCHHHHHHHHHHHHHHCCCSCCCSHHHHHHHTTC-CCCHHHH
T ss_pred ccccHHHHHHHHHHHccCCCCCCCcchHHHHHHHcc-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcc-CCCHHHH
Confidence 3455778899999987 5544445666667788875 79999988866544 44556666666554443 3478899
Q ss_pred HHHHHHHHh
Q 027312 213 KEVLIQLAK 221 (225)
Q Consensus 213 q~ILd~Lsk 221 (225)
..+..-|..
T Consensus 82 ~RV~arLaa 90 (112)
T 2lky_A 82 ERVRRHLAL 90 (112)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 888877753
No 11
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=56.42 E-value=27 Score=26.94 Aligned_cols=79 Identities=10% Similarity=0.075 Sum_probs=56.9
Q ss_pred chHHHHHHHHHHHh-cCCCCCHHHHHHHHHHhhhCCCCchhhhhhhccC----CCCHHHHHHhhccccccCCCCHHHHHH
Q 027312 140 IPVSFDKGLLYAKT-HSHFTNPQAVKGLFQSLSEHGVTDGEICVIANIC----PETVEEAYAIVPSLKAKRSRLNDLLKE 214 (225)
Q Consensus 140 ~s~Vf~KTleYl~r-FSk~k~~esv~~VrelL~~~~L~kfEiAqLaNL~----PeT~eEAkaLIPSLk~K~~~~de~Lq~ 214 (225)
++..+.+.+++++. |-.-=.+..---+..+|.+ .|++.|+.+++... +-|.++++.+|--.... .-++++|..
T Consensus 4 ~~~~l~siv~WLRaGYP~GVP~~Dy~PLlALL~r-~Ltdeev~~Va~~L~~~~~i~~~dI~~~I~~vt~~-~Ps~eDI~R 81 (103)
T 2kvc_A 4 MNRFLTSIVAWLRAGYPEGIPPTDSFAVLALLCR-RLSHDEVKAVANELMRLGDFDQIDIGVVITHFTDE-LPSPEDVER 81 (103)
T ss_dssp HHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTT-TSCHHHHHHHHHHHHHHTSSCSSCHHHHHHSCCSS-CSCHHHHHH
T ss_pred ccHHHHHHHHHHHccCCCCCCCcchHHHHHHHhc-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcc-CCCHHHHHH
Confidence 45678888888887 5444445666668888876 79999988866544 45777888888765554 347899998
Q ss_pred HHHHHH
Q 027312 215 VLIQLA 220 (225)
Q Consensus 215 ILd~Ls 220 (225)
+..-|.
T Consensus 82 V~arLa 87 (103)
T 2kvc_A 82 VRARLA 87 (103)
T ss_dssp HHHHHG
T ss_pred HHHHHH
Confidence 887765
No 12
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=49.33 E-value=60 Score=25.08 Aligned_cols=81 Identities=19% Similarity=0.187 Sum_probs=55.4
Q ss_pred CCchHHHHHHHHHHHh-cCCCCCHHHHHHHHHHhhhCCCCchhhhhhhccC--------CCCHHHHHHhhccccccCCCC
Q 027312 138 IKIPVSFDKGLLYAKT-HSHFTNPQAVKGLFQSLSEHGVTDGEICVIANIC--------PETVEEAYAIVPSLKAKRSRL 208 (225)
Q Consensus 138 ~~~s~Vf~KTleYl~r-FSk~k~~esv~~VrelL~~~~L~kfEiAqLaNL~--------PeT~eEAkaLIPSLk~K~~~~ 208 (225)
.+.+..|.+.+++++. |-.-=....---+..+|.+ .|++.|+.+++.-. |-|.+++..+|--.-.. .-+
T Consensus 7 ~~~p~~l~siv~WLRaGYPeGVP~~Dy~PLlALL~R-~Ltddev~~Va~~L~~~~~~~~pi~~~dI~~~It~vT~~-~P~ 84 (107)
T 3ol3_A 7 ETTTTFMDNVLGWLHKGYPEGVPPKDYFALLALLKR-SLTEDEVVRAAQAILRSTDGQSPVTDDDIRNAVHQIIEK-EPT 84 (107)
T ss_dssp --CHHHHHHHHHHHHHHCTTCBCGGGHHHHHHHHTC-CCCHHHHHHHHHHHHHHCCSSSCBCHHHHHHHHHHHHSS-CCC
T ss_pred ccCcHHHHHHHHHHHccCCCCCCCCccHHHHHHhcc-cCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHhcC-CcC
Confidence 3456789999999987 4333334455557788887 59999977766332 56778888888765553 347
Q ss_pred HHHHHHHHHHHH
Q 027312 209 NDLLKEVLIQLA 220 (225)
Q Consensus 209 de~Lq~ILd~Ls 220 (225)
+++|..+-.-|.
T Consensus 85 ~eDi~RV~arLa 96 (107)
T 3ol3_A 85 AEEINQVAARLA 96 (107)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888877665
No 13
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=44.73 E-value=16 Score=32.20 Aligned_cols=56 Identities=16% Similarity=0.058 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhhCCCCchhhhhhhccCCC----CHHHHHHhhccccccCCCCHHHHHHHH
Q 027312 160 PQAVKGLFQSLSEHGVTDGEICVIANICPE----TVEEAYAIVPSLKAKRSRLNDLLKEVL 216 (225)
Q Consensus 160 ~esv~~VrelL~~~~L~kfEiAqLaNL~Pe----T~eEAkaLIPSLk~K~~~~de~Lq~IL 216 (225)
++....|.++|...|+++.+++.|+.-||. +++.+...+.-|.. .-+++++|-.+|
T Consensus 48 ~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~~l~p~l~fL~~-lG~s~~~i~~il 107 (343)
T 3mva_O 48 ITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENLSKRWDLWRK-IVTSDLEIVNIL 107 (343)
T ss_dssp CCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHHHHHHHHHHHTT-TSSCHHHHHHHH
T ss_pred cccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHHHHHHHHHHHHH-cCCCHHHHHHHH
Confidence 334445556666666666666666655554 44444444444433 235555555554
No 14
>1jw2_A Hemolysin expression modulating protein HHA; structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Escherichia coli} SCOP: a.23.5.1 PDB: 2jvp_A 2k5s_A
Probab=38.79 E-value=16 Score=26.54 Aligned_cols=32 Identities=9% Similarity=0.130 Sum_probs=26.4
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHhhhCCCCchhh
Q 027312 148 LLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEI 180 (225)
Q Consensus 148 leYl~rFSk~k~~esv~~VrelL~~~~L~kfEi 180 (225)
.+|+-+|-+|.+.++.+.|-+-+. +.|++.|+
T Consensus 9 ~d~L~k~Rrc~s~eTLEkv~e~~~-y~Lt~~el 40 (72)
T 1jw2_A 9 TDYLMRLRRCQTIDTLERVIEKNK-YELSDNEL 40 (72)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHH-HHSCHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhh-ccCCHHHH
Confidence 799999999999999999988665 46666553
No 15
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=34.22 E-value=34 Score=22.62 Aligned_cols=26 Identities=19% Similarity=0.068 Sum_probs=19.5
Q ss_pred Hhhccc---cccCCCCHHHHHHHHHHHHhhh
Q 027312 196 AIVPSL---KAKRSRLNDLLKEVLIQLAKFK 223 (225)
Q Consensus 196 aLIPSL---k~K~~~~de~Lq~ILd~Lsk~r 223 (225)
...|.. .. .+++++|+.|++-|..++
T Consensus 59 ~~Mp~~~~~~~--~ls~~ei~~l~~yl~sl~ 87 (87)
T 2zxy_A 59 AIMKPQLTMLK--GLSDAELKALADFILSHK 87 (87)
T ss_dssp HHHGGGGGGGG--GCCHHHHHHHHHHHHTC-
T ss_pred CCCCCcccccc--CCCHHHHHHHHHHHHhcC
Confidence 466765 33 389999999999998764
No 16
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Probab=31.90 E-value=27 Score=25.19 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=33.4
Q ss_pred CCCchhhhhhhccCCCCHHHHHHhhccccccCCCCHHHHHHHHHHHHhhhc
Q 027312 174 GVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDLLKEVLIQLAKFKS 224 (225)
Q Consensus 174 ~L~kfEiAqLaNL~PeT~eEAkaLIPSLk~K~~~~de~Lq~ILd~Lsk~r~ 224 (225)
-|++-.+..||...|.|.+|...| +-+..+ .-+..-+.+|+.|..++.
T Consensus 37 If~D~tL~eiA~~~P~t~~eL~~i-~Gvg~~--k~~~yG~~~l~~I~~~~~ 84 (89)
T 1wud_A 37 VFNDATLIEMAEQMPITASEMLSV-NGVGMR--KLERFGKPFMALIRAHVD 84 (89)
T ss_dssp HCCHHHHHHHHHHCCCSHHHHHTS-TTCCHH--HHHHHHHHHHHHHHHHHT
T ss_pred eeCHHHHHHHHHhCCCCHHHHhhC-CCCCHH--HHHHHHHHHHHHHHHHHH
Confidence 366667778999999999999876 443332 123345778888887754
No 17
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=31.82 E-value=30 Score=25.27 Aligned_cols=34 Identities=15% Similarity=0.144 Sum_probs=28.3
Q ss_pred ccCCCCHHHHHHhhccccccCCCCHHHHHHHHHHHHh
Q 027312 185 NICPETVEEAYAIVPSLKAKRSRLNDLLKEVLIQLAK 221 (225)
Q Consensus 185 NL~PeT~eEAkaLIPSLk~K~~~~de~Lq~ILd~Lsk 221 (225)
+-.|-|.+|=+.|.-.|.. ++.+.|..|+++|++
T Consensus 14 ~~~~mT~eEK~~Ls~~I~~---Lp~e~L~~Vi~II~~ 47 (90)
T 2jns_A 14 KCKPMSYEEKRQLSLDINK---LPGEKLGRVVHIIQS 47 (90)
T ss_dssp SCCCCCHHHHHHHHHHHTT---SCHHHHTTHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHH---cCHHHHHHHHHHHHh
Confidence 4578899999988888775 888999999988875
No 18
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=31.77 E-value=19 Score=26.68 Aligned_cols=39 Identities=13% Similarity=0.067 Sum_probs=30.9
Q ss_pred hhccCCCCHHHHHHhhccccccC-------CCCHHHHHHHHHHHHh
Q 027312 183 IANICPETVEEAYAIVPSLKAKR-------SRLNDLLKEVLIQLAK 221 (225)
Q Consensus 183 LaNL~PeT~eEAkaLIPSLk~K~-------~~~de~Lq~ILd~Lsk 221 (225)
|+=+-|.+.+||+.+...|.++. .+++++-+.|+|.++-
T Consensus 7 Ivv~~P~sy~Da~~I~d~Lr~~~~VvvNL~~ld~~~AqRivDF~sG 52 (87)
T 3p04_A 7 IVPVELHSFEDAQVIGGAFRDGDAVVFDMSLLSREEARRIVDFAAG 52 (87)
T ss_dssp CEEEECSSGGGHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEecCcHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHhcc
Confidence 44567888999998888887762 6788889999998863
No 19
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=30.22 E-value=21 Score=26.00 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=31.6
Q ss_pred CCCCHHHHHHhhccccccCCCCHHHHHHHHHHHHhhhc
Q 027312 187 CPETVEEAYAIVPSLKAKRSRLNDLLKEVLIQLAKFKS 224 (225)
Q Consensus 187 ~PeT~eEAkaLIPSLk~K~~~~de~Lq~ILd~Lsk~r~ 224 (225)
-|.|.++|.+.|--++.++.-..+.-++.|++|..|++
T Consensus 3 ~~~~~~~A~~yv~kVK~rF~~~p~~Y~~FL~il~~yk~ 40 (85)
T 1e91_A 3 DSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQK 40 (85)
T ss_dssp SCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 36688999999999998855577888999999998874
No 20
>1no1_A G39P, replisome organizer, gene 39; helical, bipartite, natively unfolded domain, replication; 2.40A {Bacillus phage SPP1} SCOP: a.179.1.1
Probab=30.13 E-value=1.7e+02 Score=22.94 Aligned_cols=84 Identities=10% Similarity=0.098 Sum_probs=34.0
Q ss_pred cHHHHHHHHHHHHHHhhhhcCCC-CCCchHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhCCCC--chhhhhh-hccC--
Q 027312 114 MDCEAAHILEGIQEQMALLSADP-TIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVT--DGEICVI-ANIC-- 187 (225)
Q Consensus 114 snsEV~~ILe~~~e~~~~~s~d~-~~~~s~Vf~KTleYl~rFSk~k~~esv~~VrelL~~~~L~--kfEiAqL-aNL~-- 187 (225)
+-.|+..||.-+..-. | .....+.-.+---|.+-++-+.-.....+|+..+....+. --+|+.+ ..++
T Consensus 2 tk~E~~~lL~lI~~aY------P~~f~~d~~~~~ve~W~~lL~d~~ye~v~~Al~~hI~~~~yPPsiadI~r~~~~i~~~ 75 (126)
T 1no1_A 2 IEKDVVQILKAVSEFY------PGRFQPDDLKGTVKAWHRVLAEYELEEIMNNLTDYAKVNKFPPTVSDLLKAQSEQRDR 75 (126)
T ss_dssp CHHHHHHHHHHHHHHS------TTTCCCTTHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCSSCCCGGGGCC--------
T ss_pred CHHHHHHHHHHHHHHC------HHHhcCccchHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhhcC
Confidence 5678888888776432 2 1222222223334555566666567777777777754432 2343332 2343
Q ss_pred -CCCHHHHHHhhccccc
Q 027312 188 -PETVEEAYAIVPSLKA 203 (225)
Q Consensus 188 -PeT~eEAkaLIPSLk~ 203 (225)
.-+.+|+..++++..+
T Consensus 76 ~~p~~~E~~~~~~~~~~ 92 (126)
T 1no1_A 76 FIPSYEETQRILKEQAE 92 (126)
T ss_dssp -----------------
T ss_pred CCCcHHHHHHHHHHHhH
Confidence 2478999999997763
No 21
>1yse_A DNA-binding protein SATB1; all helical, DNA-binding domain, T-cell development; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=29.83 E-value=38 Score=27.43 Aligned_cols=56 Identities=13% Similarity=0.104 Sum_probs=33.0
Q ss_pred chHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhCCCCchhhhh-hhccCCCCHHHHH
Q 027312 140 IPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICV-IANICPETVEEAY 195 (225)
Q Consensus 140 ~s~Vf~KTleYl~rFSk~k~~esv~~VrelL~~~~L~kfEiAq-LaNL~PeT~eEAk 195 (225)
++.++.|-++|+..-..--+.+.++.|++.|.++.+++-=.|. +.|.+..|.-|+-
T Consensus 4 ~~~~~nkp~~~~~t~~~~vt~~I~~~Ik~eLk~~~IsQ~~FA~~VL~rsQGtLS~LL 60 (141)
T 1yse_A 4 VSRSMNKPLEQQVSTNTEVSSEIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEIL 60 (141)
T ss_dssp ---------------CCSCCTHHHHHHHHHHHHHTCCHHHHHHHHCCSCTTHHHHHH
T ss_pred HHHHhcCCccccccccccchHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhhHHHHH
Confidence 3467889999999977766789999999999999998755444 8899988876654
No 22
>2xv9_A ABA-1A1 repeat UNIT; lipid binding protein, fatty acid binding, retinol binding,; NMR {Ascaris suum}
Probab=27.46 E-value=78 Score=25.22 Aligned_cols=112 Identities=16% Similarity=0.086 Sum_probs=67.7
Q ss_pred cccccCcccccccccccHHHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHhcCCCCCHHHHHHHH----HHhhhC
Q 027312 98 LELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF----QSLSEH 173 (225)
Q Consensus 98 aeLkLG~eF~~nakcLsnsEV~~ILe~~~e~~~~~s~d~~~~~s~Vf~KTleYl~rFSk~k~~esv~~Vr----elL~~~ 173 (225)
.+..|.+-|.....+||..+...|++-+.+ ...-.+|+.|.++|.+.-..=.-..+.+.++ ++|..
T Consensus 6 ~~~~le~~~~~~LsWLt~eQk~EI~kMk~~---------gksk~~v~~KI~efye~l~gd~K~~a~e~L~~~C~~~lk~- 75 (134)
T 2xv9_A 6 HHFTLESSLDTHLKWLSQEQKDELLKMKKD---------GKAKKELEAKILHYYDELEGDAKKEATEHLKGGCREILKH- 75 (134)
T ss_dssp SSSCSGGGTTTTTTTSCHHHHHHHHHHHHT---------TCCHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ccCCHHHHHHHHHHHCCHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHH-
Confidence 344566677777889999999998876532 1134589999999999755433233433333 33332
Q ss_pred CCCchhhhhhhccCC--CCHHHHHHhhccccccCCCCHHHHHHHHHHHHh
Q 027312 174 GVTDGEICVIANICP--ETVEEAYAIVPSLKAKRSRLNDLLKEVLIQLAK 221 (225)
Q Consensus 174 ~L~kfEiAqLaNL~P--eT~eEAkaLIPSLk~K~~~~de~Lq~ILd~Lsk 221 (225)
-+.+..++.|-.+.= .+++|+++.+-.+-.. ++|++=+.-.+....
T Consensus 76 iiG~e~~~eLk~m~~sg~~~e~l~~Kv~e~i~~--i~dE~kk~~ae~~~~ 123 (134)
T 2xv9_A 76 VVGEEKAAELKNLKDSGASKEELKAKVEEALHA--VTDEEKKQYIADFGP 123 (134)
T ss_dssp HTHHHHHHHHHHHHHHTCCHHHHHHHHHHHTTS--CCCHHHHHHHHHTHH
T ss_pred HhhHhHHHHHHHHHHcCCCHHHHHHHHHHHHHH--hhcHHHHHHHHHHHH
Confidence 233444555555544 5788887777655443 667655544444433
No 23
>2yb5_A FUSC, putative fusidic acid resistance protein; translation, antibiotic resistance, zinc finger; 2.10A {Staphylococcus aureus}
Probab=27.42 E-value=18 Score=31.14 Aligned_cols=27 Identities=11% Similarity=-0.166 Sum_probs=15.4
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 027312 144 FDKGLLYAKTHSHFTNPQAVKGLFQSLS 171 (225)
Q Consensus 144 f~KTleYl~rFSk~k~~esv~~VrelL~ 171 (225)
=+++.+-++.+.. .++..+++|+.+..
T Consensus 16 K~q~~~L~~~~~t-nD~~vi~a~k~~~~ 42 (215)
T 2yb5_A 16 KQLVYQLIKLYRT-NDMNSHKTQKDFLL 42 (215)
T ss_dssp HHHHHHHHHHHHS-SCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CCHHHHHHHHHHHH
Confidence 3344445555666 66777776665543
No 24
>2h5n_A Hypothetical protein PG_1108; SAD, MCSG,PSI, structural genomics, PR structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: a.287.1.2
Probab=25.75 E-value=1.5e+02 Score=22.57 Aligned_cols=12 Identities=25% Similarity=-0.039 Sum_probs=5.3
Q ss_pred CHHHHHHHHHHH
Q 027312 208 LNDLLKEVLIQL 219 (225)
Q Consensus 208 ~de~Lq~ILd~L 219 (225)
+.++...+|+.|
T Consensus 80 ~~e~r~~ll~~L 91 (133)
T 2h5n_A 80 DEERKKYVASYL 91 (133)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 344444444443
No 25
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=25.49 E-value=47 Score=25.35 Aligned_cols=45 Identities=22% Similarity=0.196 Sum_probs=29.9
Q ss_pred CCchhhhhhhccCCCCHHHHHHhhccccccCCCCHHHHHHHHHHHHhhh
Q 027312 175 VTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDLLKEVLIQLAKFK 223 (225)
Q Consensus 175 L~kfEiAqLaNL~PeT~eEAkaLIPSLk~K~~~~de~Lq~ILd~Lsk~r 223 (225)
|++.....||..+|.|.+|...|----..+ -+.. +.||+.|..+.
T Consensus 47 f~D~tL~emA~~~P~t~~eL~~I~Gvg~~K---~~~y-~~~L~~I~~~~ 91 (113)
T 2dgz_A 47 ATNKILVDMAKMRPTTVENVKRIDGVSEGK---AAML-APLWEVIKHFC 91 (113)
T ss_dssp CCHHHHHHHHHHCCCSHHHHHHSSSCCTTG---GGGG-HHHHHHHHHHH
T ss_pred ECHHHHHHHHHhCCCCHHHHHhCCCCCHHH---HHHH-HHHHHHHHHHH
Confidence 556667779999999999998863221222 2223 67777777664
No 26
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=25.01 E-value=31 Score=25.33 Aligned_cols=41 Identities=22% Similarity=0.252 Sum_probs=33.8
Q ss_pred hccCCCCHHHHHHhhccccccCCCCHHHHHHHHHHHHhhhc
Q 027312 184 ANICPETVEEAYAIVPSLKAKRSRLNDLLKEVLIQLAKFKS 224 (225)
Q Consensus 184 aNL~PeT~eEAkaLIPSLk~K~~~~de~Lq~ILd~Lsk~r~ 224 (225)
.+--|.|.++|...|-.++.|+.-..+..++.|++|..|++
T Consensus 3 ~~~~~~~~~~A~~YvnkVK~rF~~~p~~Y~~FL~IL~~y~~ 43 (89)
T 1g1e_B 3 QNNQPVEFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQK 43 (89)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHh
Confidence 34567789999999999999854478899999999999864
No 27
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Probab=24.74 E-value=47 Score=22.63 Aligned_cols=25 Identities=8% Similarity=0.118 Sum_probs=18.3
Q ss_pred hhccccccCCCCHHHHHHHHHHHHhhh
Q 027312 197 IVPSLKAKRSRLNDLLKEVLIQLAKFK 223 (225)
Q Consensus 197 LIPSLk~K~~~~de~Lq~ILd~Lsk~r 223 (225)
..|..... +++++|..|+.-|..++
T Consensus 75 ~Mp~~~~~--ls~~ei~~l~~yl~sl~ 99 (99)
T 1w2l_A 75 VMPASYAS--LSEREVAALIEFIKQQQ 99 (99)
T ss_dssp CCCGGGGG--CCHHHHHHHHHHHHTCC
T ss_pred cCcccccc--CCHHHHHHHHHHHHHcC
Confidence 35554443 89999999999888763
No 28
>4epz_A Transcription anti-terminator antagonist UPXZ; transcription regulation, antagonist of transcription anti- termination; HET: MSE; 1.68A {Bacteroides uniformis atcc 8492}
Probab=24.70 E-value=62 Score=26.76 Aligned_cols=31 Identities=19% Similarity=0.375 Sum_probs=24.0
Q ss_pred HHHHHHhhccccccCCCCHHHHHHHHHHHHhhh
Q 027312 191 VEEAYAIVPSLKAKRSRLNDLLKEVLIQLAKFK 223 (225)
Q Consensus 191 ~eEAkaLIPSLk~K~~~~de~Lq~ILd~Lsk~r 223 (225)
++||++||.+-..+ .++.|+ ++|+++|.++-
T Consensus 121 a~eah~Ii~~W~~~-~Lt~eq-~e~ieel~n~e 151 (162)
T 4epz_A 121 AHEAHQLIETWNIS-DLTDEQ-KEIIEELRNFE 151 (162)
T ss_dssp HHHHHHHHHTSCGG-GCCHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHhcccc-cCCHHH-HHHHHHHhccc
Confidence 68999999997664 677776 56778887763
No 29
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=23.73 E-value=66 Score=22.84 Aligned_cols=37 Identities=24% Similarity=0.286 Sum_probs=30.1
Q ss_pred CCCHHHHHHhhccccccCCCCHHHHHHHHHHHHhhhc
Q 027312 188 PETVEEAYAIVPSLKAKRSRLNDLLKEVLIQLAKFKS 224 (225)
Q Consensus 188 PeT~eEAkaLIPSLk~K~~~~de~Lq~ILd~Lsk~r~ 224 (225)
|-|+++|.+-+-.++.++.-..+.-++.|++|..|+.
T Consensus 1 ~l~~~dA~~yl~~VK~~F~~~p~~Y~~FL~im~~~k~ 37 (77)
T 2czy_A 1 PVHVEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKS 37 (77)
T ss_dssp CCSHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 4578899999998888854466888999999998874
No 30
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=23.16 E-value=1.1e+02 Score=20.71 Aligned_cols=52 Identities=15% Similarity=0.196 Sum_probs=33.8
Q ss_pred HHHHHHHHhhhCCCCchhhhhhhccCCCCHHHHHHhhccccccCCCCHHHHHHHHHHH
Q 027312 162 AVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDLLKEVLIQL 219 (225)
Q Consensus 162 sv~~VrelL~~~~L~kfEiAqLaNL~PeT~eEAkaLIPSLk~K~~~~de~Lq~ILd~L 219 (225)
-...|+.+....+|++.|+|..+++.+.++-.... .+...+.+.|..|.+.+
T Consensus 14 ~~~~l~~~r~~~glsq~~lA~~~gis~~~is~~e~------g~~~p~~~~l~~la~~l 65 (91)
T 1x57_A 14 VGKVIQQGRQSKGLTQKDLATKINEKPQVIADYES------GRAIPNNQVLGKIERAI 65 (91)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHH------TCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc------CCCCCCHHHHHHHHHHH
Confidence 44556666677789999999888887765533221 12235667777776655
No 31
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=23.16 E-value=46 Score=22.52 Aligned_cols=26 Identities=4% Similarity=-0.023 Sum_probs=19.4
Q ss_pred hhccccccCCCCHHHHHHHHHHHHhhhc
Q 027312 197 IVPSLKAKRSRLNDLLKEVLIQLAKFKS 224 (225)
Q Consensus 197 LIPSLk~K~~~~de~Lq~ILd~Lsk~r~ 224 (225)
..|..... +++++|..|+.-|..++.
T Consensus 59 ~Mp~~~~~--ls~~ei~~l~~yl~~l~~ 84 (87)
T 1cno_A 59 VMQGQATA--LSDADIANLAAYYASNPA 84 (87)
T ss_dssp HHHHHHTT--CCHHHHHHHHHHHHHSCT
T ss_pred ccHHHHhh--CCHHHHHHHHHHHHhCCc
Confidence 45555443 899999999999988754
No 32
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=23.01 E-value=34 Score=26.09 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=31.7
Q ss_pred CCCCHHHHHHhhccccccCCCCHHHHHHHHHHHHhhhc
Q 027312 187 CPETVEEAYAIVPSLKAKRSRLNDLLKEVLIQLAKFKS 224 (225)
Q Consensus 187 ~PeT~eEAkaLIPSLk~K~~~~de~Lq~ILd~Lsk~r~ 224 (225)
-|.|.++|.+.|--++.||.-..+.-++.|++|..|++
T Consensus 3 ~~~~~~dA~~YvnkVK~rF~d~p~vY~~FL~IL~~yk~ 40 (105)
T 2f05_A 3 DSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQK 40 (105)
T ss_dssp SCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHh
Confidence 46788999999999999855577888999999998864
No 33
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=22.53 E-value=49 Score=21.40 Aligned_cols=14 Identities=14% Similarity=0.268 Sum_probs=8.8
Q ss_pred ccCCCCHHHHHHHH
Q 027312 203 AKRSRLNDLLKEVL 216 (225)
Q Consensus 203 ~K~~~~de~Lq~IL 216 (225)
+.+.++||+|+.||
T Consensus 19 RNrpltDEeLD~mL 32 (39)
T 3lqv_P 19 RNRPLSDEELDAMF 32 (39)
T ss_dssp TTCCCCHHHHHHTC
T ss_pred hcCCCCHHHHHHhC
Confidence 33456777777765
No 34
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}
Probab=22.04 E-value=72 Score=21.37 Aligned_cols=26 Identities=8% Similarity=0.111 Sum_probs=18.8
Q ss_pred hccccccCCCCHHHHHHHHHHHHhhhc
Q 027312 198 VPSLKAKRSRLNDLLKEVLIQLAKFKS 224 (225)
Q Consensus 198 IPSLk~K~~~~de~Lq~ILd~Lsk~r~ 224 (225)
.|..... .+++++|..|+.-|..+.+
T Consensus 62 Mp~~~~~-~ls~~ei~~l~~yl~~~~~ 87 (87)
T 2zon_G 62 MPPRGGT-AADEATLRAAVAYMMDAAR 87 (87)
T ss_dssp BCGGGGC-CCCHHHHHHHHHHHHHHTC
T ss_pred CCCCCCC-CCCHHHHHHHHHHHHHhcC
Confidence 4554430 3899999999999987753
No 35
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=21.98 E-value=1.2e+02 Score=23.19 Aligned_cols=64 Identities=13% Similarity=0.190 Sum_probs=43.5
Q ss_pred cCCCCCHHHHHHHHHHhhhCC--CCchhhhhhhccCCCCHHHHHHhhcccc-----ccCCCCHHHHHHHHH
Q 027312 154 HSHFTNPQAVKGLFQSLSEHG--VTDGEICVIANICPETVEEAYAIVPSLK-----AKRSRLNDLLKEVLI 217 (225)
Q Consensus 154 FSk~k~~esv~~VrelL~~~~--L~kfEiAqLaNL~PeT~eEAkaLIPSLk-----~K~~~~de~Lq~ILd 217 (225)
|......+..+.++..+...+ +++..+..|+..++.++.++..++-.+. +...++.++|+++|.
T Consensus 171 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~~It~~~v~~~l~ 241 (242)
T 3bos_A 171 LQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQRKLTIPFVKEMLR 241 (242)
T ss_dssp CCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHT
T ss_pred eCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHhh
Confidence 555655566666666665444 5555566799999999999887765432 223588888888774
No 36
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=21.95 E-value=59 Score=24.76 Aligned_cols=11 Identities=18% Similarity=0.163 Sum_probs=5.9
Q ss_pred CCHHHHHHhhc
Q 027312 189 ETVEEAYAIVP 199 (225)
Q Consensus 189 eT~eEAkaLIP 199 (225)
-|.+|+..||-
T Consensus 118 ls~~e~~~l~~ 128 (159)
T 3i5g_C 118 ITEDQCNDIFT 128 (159)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 35555555554
No 37
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=21.65 E-value=2.3e+02 Score=20.49 Aligned_cols=60 Identities=15% Similarity=0.104 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhhhCCCCchhhhhhhccCC-CCHHHHHH-----hhccccccCCCCHHHHHHHHHHHHhh
Q 027312 160 PQAVKGLFQSLSEHGVTDGEICVIANICP-ETVEEAYA-----IVPSLKAKRSRLNDLLKEVLIQLAKF 222 (225)
Q Consensus 160 ~esv~~VrelL~~~~L~kfEiAqLaNL~P-eT~eEAka-----LIPSLk~K~~~~de~Lq~ILd~Lsk~ 222 (225)
++--+.|++++..+|-.. -..||..+| .|+...+. |-|.+.. ..+++++-+.|++.+..|
T Consensus 6 ~eED~~L~~~v~~~g~~~--W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~-~~WT~eEd~~L~~~~~~~ 71 (107)
T 2k9n_A 6 EEEDLKLQQLVMRYGAKD--WIRISQLMITRNPRQCRERWNNYINPALRT-DPWSPEEDMLLDQKYAEY 71 (107)
T ss_dssp HHHHHHHHHHHHHHCSSC--HHHHHHHTTTSCHHHHHHHHHHHSSSCCTT-CCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCC--HHHHhhhcCCCCHHHHHHHHHHHHcccccc-cccCHHHHHHHHHHHHHh
Confidence 344455777777666432 333444555 46666643 6687765 368888888888877654
No 38
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=21.56 E-value=69 Score=24.17 Aligned_cols=16 Identities=0% Similarity=-0.039 Sum_probs=11.5
Q ss_pred ccccccHHHHHHHHHH
Q 027312 109 NAKCLMDCEAAHILEG 124 (225)
Q Consensus 109 nakcLsnsEV~~ILe~ 124 (225)
+-..|+..|+..+|..
T Consensus 29 ~dG~I~~~El~~~l~~ 44 (153)
T 3i5g_B 29 RDGFIGMEDLKDMFSS 44 (153)
T ss_dssp TTSCCCHHHHHHHHHH
T ss_pred CCCeEcHHHHHHHHHH
Confidence 4457888888887754
No 39
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=21.52 E-value=1.2e+02 Score=21.65 Aligned_cols=44 Identities=9% Similarity=-0.022 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhhCCCCchh-hhhhhccCC-CCHHHHHHhhccccc
Q 027312 160 PQAVKGLFQSLSEHGVTDGE-ICVIANICP-ETVEEAYAIVPSLKA 203 (225)
Q Consensus 160 ~esv~~VrelL~~~~L~kfE-iAqLaNL~P-eT~eEAkaLIPSLk~ 203 (225)
.+-...++++|..+...... ...||+.+| .|++|++.-+-.|-+
T Consensus 13 ~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 13 EKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp HHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 56667788888877654333 556888888 899999987776644
No 40
>2c1d_B SOXX; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus pantotrophus}
Probab=21.36 E-value=53 Score=24.43 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=20.7
Q ss_pred HhhccccccCCCCHHHHHHHHHHHHhhhc
Q 027312 196 AIVPSLKAKRSRLNDLLKEVLIQLAKFKS 224 (225)
Q Consensus 196 aLIPSLk~K~~~~de~Lq~ILd~Lsk~r~ 224 (225)
.+.|.+... +++++|..|+.-|..+++
T Consensus 111 ~~Mp~~~~~--Ls~~ei~~l~aYl~sl~~ 137 (137)
T 2c1d_B 111 AGAEPLAPI--LNAQQIEDVVAFLVTLKE 137 (137)
T ss_dssp BCCSSCCCS--SCHHHHHHHHHHHHTCCC
T ss_pred ccChhhhcC--CCHHHHHHHHHHHHHccC
Confidence 455655554 899999999999988753
No 41
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=21.22 E-value=67 Score=21.34 Aligned_cols=25 Identities=8% Similarity=0.094 Sum_probs=19.0
Q ss_pred hhccccccCCCCHHHHHHHHHHHHhhh
Q 027312 197 IVPSLKAKRSRLNDLLKEVLIQLAKFK 223 (225)
Q Consensus 197 LIPSLk~K~~~~de~Lq~ILd~Lsk~r 223 (225)
..|.... .+++++|..|+.-|..+.
T Consensus 61 ~Mp~~~~--~ls~~ei~~l~~yl~~~~ 85 (89)
T 1f1f_A 61 AMPGFNG--RLSPLQIEDVAAYVVDQA 85 (89)
T ss_dssp TBCCCTT--TSCHHHHHHHHHHHHHHH
T ss_pred CCCcccc--CCCHHHHHHHHHHHHHHh
Confidence 4555554 389999999999998764
No 42
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein; 1.45A {Homo sapiens} SCOP: a.39.1.2 PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A
Probab=21.11 E-value=80 Score=23.00 Aligned_cols=33 Identities=9% Similarity=-0.166 Sum_probs=16.6
Q ss_pred CCCHHHHHHhhcccccc--CCCCHHHHHHHHHHHH
Q 027312 188 PETVEEAYAIVPSLKAK--RSRLNDLLKEVLIQLA 220 (225)
Q Consensus 188 PeT~eEAkaLIPSLk~K--~~~~de~Lq~ILd~Ls 220 (225)
+-|.+|+..+|-.+... ..++-++.-.++..+.
T Consensus 49 ~~~~~ev~~~i~~~D~dgDG~Idf~EF~~~~~~~~ 83 (101)
T 3nso_A 49 EFRECDYNKFMSVLDTNKDCEVDFVEYVRSLACLC 83 (101)
T ss_dssp TTCHHHHHHHHHHHHHCCCSCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 44666777777655431 2344444444444443
No 43
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=21.05 E-value=2.4e+02 Score=23.55 Aligned_cols=72 Identities=21% Similarity=0.324 Sum_probs=44.0
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHhhhCCCCchhhhhhh-------------ccC-CCCHHHHHHhh------------ccc
Q 027312 148 LLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIA-------------NIC-PETVEEAYAIV------------PSL 201 (225)
Q Consensus 148 leYl~rFSk~k~~esv~~VrelL~~~~L~kfEiAqLa-------------NL~-PeT~eEAkaLI------------PSL 201 (225)
..|++.| .|.+..-..++|.+|..+.|. .|.-+|- |-. -.++|-|..|. |..
T Consensus 78 ~~y~~~f-dF~~~~ld~ALR~fL~~f~LP-gEaQ~IdRile~Fa~ry~~~Np~~f~s~D~~~vLaySiImLNTDlHn~~v 155 (203)
T 1r8s_E 78 HAFVDLH-EFTDLNLVQALRQFLWSFRLP-GKAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSYSVIMLNTDLHNPNV 155 (203)
T ss_dssp HHHHHTC-CCTTCCHHHHHHHHHHSSCCC-SSHHHHHHHHHHHHHHHHHHSTTSSSCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhc-CCCCCcHHHHHHHHHHhccCC-CchHHHHHHHHHHHHHHHHhCCcccCCcchHHHHHHHHHHhcccccCccc
Confidence 3577766 455667788888888877773 3332222 211 12566665543 444
Q ss_pred ccc----------------CCCCHHHHHHHHHHHHh
Q 027312 202 KAK----------------RSRLNDLLKEVLIQLAK 221 (225)
Q Consensus 202 k~K----------------~~~~de~Lq~ILd~Lsk 221 (225)
+.| ..++++.|+.|.+.|..
T Consensus 156 k~kMt~~~Fi~n~rgin~g~d~p~e~L~~iYd~I~~ 191 (203)
T 1r8s_E 156 RDKMGLERFVAMNRGINEGGDLPEELLRNLYDSIRN 191 (203)
T ss_dssp CSCCCHHHHHHHTTTTBTTBCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHhhcccCCCCCCHHHHHHHHHHHHh
Confidence 443 25788889998888764
No 44
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=20.56 E-value=2.1e+02 Score=22.08 Aligned_cols=40 Identities=23% Similarity=0.062 Sum_probs=27.5
Q ss_pred HHHHHHHHH--HhhhCCCCchhhhhhhccCCCCHHHHHHhhc
Q 027312 160 PQAVKGLFQ--SLSEHGVTDGEICVIANICPETVEEAYAIVP 199 (225)
Q Consensus 160 ~esv~~Vre--lL~~~~L~kfEiAqLaNL~PeT~eEAkaLIP 199 (225)
++.+..++. .|...|++=.||..+.+....+.++...++.
T Consensus 45 ~~dl~~l~~I~~lr~~G~sl~~I~~~l~~~~~~~~~~~~~L~ 86 (146)
T 3hh0_A 45 KDDLYVLQQIQSFKHLGFSLGEIQNIILQRDIETEVFLRQMH 86 (146)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 455555543 2346789888888888888778887776654
No 45
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=20.12 E-value=1.2e+02 Score=19.47 Aligned_cols=49 Identities=18% Similarity=0.086 Sum_probs=32.0
Q ss_pred HHHHHhhhCCCCchhhhhhhccCCCCHHHHHHhhccccccCCCCHHHHHHHHHHH
Q 027312 165 GLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDLLKEVLIQL 219 (225)
Q Consensus 165 ~VrelL~~~~L~kfEiAqLaNL~PeT~eEAkaLIPSLk~K~~~~de~Lq~ILd~L 219 (225)
.|+.++...+++..++|..+++.|.++-.... .+...+.+.|..|.+.+
T Consensus 14 ~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~------g~~~~~~~~l~~ia~~l 62 (76)
T 3bs3_A 14 RIKVVLAEKQRTNRWLAEQMGKSENTISRWCS------NKSQPSLDMLVKVAELL 62 (76)
T ss_dssp CHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT------TSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc------CCCCCCHHHHHHHHHHH
Confidence 35666666789999999988887766543221 22235677777776654
No 46
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=20.12 E-value=1.8e+02 Score=18.92 Aligned_cols=53 Identities=17% Similarity=0.146 Sum_probs=32.7
Q ss_pred HHHHHHHhhhCCCCchhhhhhhccCCCCHHHHHHhhccccccCCCCHHHHHHHHHHHHh
Q 027312 163 VKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDLLKEVLIQLAK 221 (225)
Q Consensus 163 v~~VrelL~~~~L~kfEiAqLaNL~PeT~eEAkaLIPSLk~K~~~~de~Lq~ILd~Lsk 221 (225)
...|+.+....++++.|.|..+++.+.++-..-. .+...+-+.|..++..|..
T Consensus 12 ~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~------g~~~~~~~~l~~~~~~l~~ 64 (84)
T 2ef8_A 12 VQLLTKLRKEASLSQSELAIFLGLSQSDISKIES------FERRLDALELFELLEVVAS 64 (84)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT------TSSCCBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc------CCCCCCHHHHHHHHHHHcc
Confidence 3456666667799999999888887665433211 1223555666666666543
No 47
>1dgn_A Iceberg (protease inhibitor); antiparallel six-helix bundle, greek-KEY, hydrolase inhibitor; NMR {Homo sapiens} SCOP: a.77.1.3
Probab=20.07 E-value=1.3e+02 Score=21.61 Aligned_cols=59 Identities=8% Similarity=0.180 Sum_probs=41.3
Q ss_pred HHHHHHHHH-HhhhCCCCchhhhhhhccCCCCHHHHHHhhccccccCCCCHHHHHHHHHHHHh
Q 027312 160 PQAVKGLFQ-SLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDLLKEVLIQLAK 221 (225)
Q Consensus 160 ~esv~~Vre-lL~~~~L~kfEiAqLaNL~PeT~eEAkaLIPSLk~K~~~~de~Lq~ILd~Lsk 221 (225)
+..+..|.. ++...-|+..|...|-.--+...|.||.||-++.+| .+..-+-++..|.+
T Consensus 18 ~~~i~~lLD~Ll~~~VLn~~E~e~i~~~~~t~~dkar~LiD~V~~K---G~~A~~~f~~~L~~ 77 (89)
T 1dgn_A 18 AGTINALLDCLLEDEVISQEDMNKVRDENDTVMDKARVLIDLVTGK---GPKSCCKFIKHLCE 77 (89)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHTCCSSHHHHHHHHHHHHHHT---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcccHHHHHHHHhccCchHHHHHHHHHHHHHH---hHHHHHHHHHHHHH
Confidence 455665554 445667888888877764465599999999999876 56666656555543
Done!