Query 027313
Match_columns 225
No_of_seqs 128 out of 485
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 13:10:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027313.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027313hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ig6_A MRF-2, modulator recogn 100.0 2.4E-30 8.4E-35 201.3 5.9 103 32-135 2-105 (107)
2 2eqy_A RBP2 like, jumonji, at 100.0 2E-28 6.9E-33 195.3 9.4 97 24-121 4-100 (122)
3 2jrz_A Histone demethylase jar 99.9 2E-28 6.7E-33 193.9 8.7 97 25-122 3-99 (117)
4 2cxy_A BAF250B subunit, HBAF25 99.9 5.4E-28 1.8E-32 193.2 10.6 100 32-132 20-120 (125)
5 2lm1_A Lysine-specific demethy 99.9 2.4E-28 8.1E-33 189.7 8.0 97 24-121 6-102 (107)
6 2jxj_A Histone demethylase jar 99.9 2.5E-28 8.7E-33 186.2 7.5 92 29-121 3-94 (96)
7 2rq5_A Protein jumonji; develo 99.9 1.5E-27 5.3E-32 190.7 9.7 89 33-121 12-101 (121)
8 1c20_A DEAD ringer protein; DN 99.9 2.6E-27 9E-32 189.7 9.0 91 32-122 21-112 (128)
9 1kkx_A Transcription regulator 99.9 7.9E-27 2.7E-31 186.8 8.4 91 27-122 12-103 (123)
10 2li6_A SWI/SNF chromatin-remod 99.9 6.5E-27 2.2E-31 184.8 7.4 93 24-121 10-103 (116)
11 2kk0_A AT-rich interactive dom 99.9 1.7E-26 5.7E-31 189.2 9.0 89 33-121 34-123 (145)
12 1gvd_A MYB proto-oncogene prot 85.4 0.66 2.3E-05 30.3 3.0 39 66-116 13-51 (52)
13 2dim_A Cell division cycle 5-l 83.2 1.1 3.6E-05 31.2 3.5 39 66-116 19-57 (70)
14 1guu_A C-MYB, MYB proto-oncoge 82.8 1.2 3.9E-05 29.1 3.3 39 66-116 13-51 (52)
15 1ity_A TRF1; helix-turn-helix, 81.9 1.6 5.6E-05 30.2 4.0 41 66-116 20-60 (69)
16 1x41_A Transcriptional adaptor 81.7 1.6 5.3E-05 29.6 3.8 38 66-115 18-55 (60)
17 2d9a_A B-MYB, MYB-related prot 79.3 1.8 6.3E-05 29.0 3.5 39 66-116 18-56 (60)
18 1w0t_A Telomeric repeat bindin 75.2 3.7 0.00013 26.8 4.0 39 66-114 12-50 (53)
19 2elk_A SPCC24B10.08C protein; 74.0 3.4 0.00012 27.7 3.6 39 66-115 19-57 (58)
20 2yum_A ZZZ3 protein, zinc fing 71.9 4.1 0.00014 28.4 3.8 45 66-117 18-62 (75)
21 3sjm_A Telomeric repeat-bindin 69.6 6.8 0.00023 27.0 4.5 40 66-115 21-60 (64)
22 2din_A Cell division cycle 5-l 66.9 8.9 0.0003 26.0 4.6 40 66-119 19-58 (66)
23 2cu7_A KIAA1915 protein; nucle 65.9 9.8 0.00033 26.4 4.7 41 66-119 19-59 (72)
24 2k9n_A MYB24; R2R3 domain, DNA 64.6 5.7 0.00019 29.5 3.5 38 66-115 11-48 (107)
25 2yus_A SWI/SNF-related matrix- 60.3 7.7 0.00026 27.9 3.4 36 65-113 27-62 (79)
26 1gv2_A C-MYB, MYB proto-oncoge 58.8 6.8 0.00023 28.7 3.0 38 66-115 14-51 (105)
27 1h8a_C AMV V-MYB, MYB transfor 49.8 15 0.00051 27.9 3.7 39 65-115 36-74 (128)
28 2k9n_A MYB24; R2R3 domain, DNA 41.5 29 0.001 25.5 4.1 42 65-119 62-103 (107)
29 2lo0_A Uncharacterized protein 41.5 15 0.00052 26.7 2.3 40 9-48 11-53 (75)
30 1gv2_A C-MYB, MYB proto-oncoge 39.5 30 0.001 25.2 3.8 38 65-115 65-102 (105)
31 3zqc_A MYB3; transcription-DNA 36.7 31 0.0011 26.3 3.7 39 65-116 63-101 (131)
32 3osg_A MYB21; transcription-DN 34.7 31 0.0011 26.2 3.3 37 66-115 21-57 (126)
33 1h89_C C-MYB, MYB proto-oncoge 31.6 37 0.0013 26.6 3.4 39 65-115 67-105 (159)
34 2cqq_A RSGI RUH-037, DNAJ homo 31.5 58 0.002 22.8 4.1 40 67-116 19-58 (72)
35 2cqr_A RSGI RUH-043, DNAJ homo 30.8 41 0.0014 23.7 3.2 40 67-115 29-68 (73)
36 2ltp_A Nuclear receptor corepr 36.5 11 0.00037 27.5 0.0 30 85-119 37-66 (89)
37 1bax_A M-PMV MA, M-PMV matrix 28.9 46 0.0016 25.1 3.3 54 34-94 8-64 (94)
38 2do5_A Splicing factor 3B subu 26.7 56 0.0019 22.3 3.1 27 32-58 29-55 (58)
39 2ckx_A NGTRF1, telomere bindin 26.1 81 0.0028 22.7 4.1 40 66-115 10-51 (83)
40 2lpy_A Matrix protein P10; GAG 26.1 1.3E+02 0.0045 23.6 5.6 55 33-94 6-63 (124)
41 3rfr_A PMOB; membrane, oxidore 24.3 35 0.0012 32.0 2.3 38 165-212 176-213 (419)
42 2cjj_A Radialis; plant develop 23.0 1.1E+02 0.0039 22.4 4.5 30 83-117 31-60 (93)
43 1fex_A TRF2-interacting telome 22.9 89 0.0031 21.0 3.6 46 66-115 12-58 (59)
No 1
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=99.96 E-value=2.4e-30 Score=201.30 Aligned_cols=103 Identities=27% Similarity=0.457 Sum_probs=96.7
Q ss_pred CChhHHHHHHHHHHhhcCCCC-CCCeeCCeecchhhhHHHHHhcCcchhhccccChHHHHhhhCCCCCCCcHHHHHHHHH
Q 027313 32 KDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHY 110 (225)
Q Consensus 32 ~ere~Fl~~L~~F~~~rG~pl-k~P~I~GK~VDLy~LY~~V~~~GGy~~Vt~~k~W~eVA~~LGlp~~~t~as~~LK~~Y 110 (225)
++++.|+++|.+||+++|+|+ ++|.|+|++||||+||++|+++|||++||++++|.+||+.||++++++++++.||++|
T Consensus 2 ~e~~~Fl~~L~~F~~~rg~~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y 81 (107)
T 1ig6_A 2 ADEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHY 81 (107)
T ss_dssp HHHHHHHHHHHHHHHTTTCCGGGCCCSSSSSCCHHHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHH
T ss_pred chHHHHHHHHHHHHHHcCCCCCcCceECCEeecHHHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHH
Confidence 478999999999999999999 7999999999999999999999999999999999999999999999899999999999
Q ss_pred HHhhHHHHHHHhhhcCCCCCCCCCC
Q 027313 111 LTLLYHYEQVHFFKMQGPPCVPSGK 135 (225)
Q Consensus 111 ~kyLlpYE~~~~~ge~~~~~~p~~~ 135 (225)
++||++||++ ..++++++.||..|
T Consensus 82 ~k~L~~yE~~-~~~~~~~~~p~~~~ 105 (107)
T 1ig6_A 82 ERLILPYERF-IKGEEDKPLPPIKP 105 (107)
T ss_dssp HHHTTTTHHH-HHHHTSSSSCTTCS
T ss_pred HHHHHHHHHH-HcCCCCCCCCCCCC
Confidence 9999999995 56888888887766
No 2
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.95 E-value=2e-28 Score=195.25 Aligned_cols=97 Identities=26% Similarity=0.465 Sum_probs=91.8
Q ss_pred CCCCCcccCChhHHHHHHHHHHhhcCCCCCCCeeCCeecchhhhHHHHHhcCcchhhccccChHHHHhhhCCCCCCCcHH
Q 027313 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSAS 103 (225)
Q Consensus 24 ~~s~e~~~~ere~Fl~~L~~F~~~rG~plk~P~I~GK~VDLy~LY~~V~~~GGy~~Vt~~k~W~eVA~~LGlp~~~t~as 103 (225)
+++.++.+++++.|+++|.+||+.||+|+++|.|+|++||||+||++|+++|||++||++++|.+||+.||+|++ ++++
T Consensus 4 Lnele~~~~~~~~Fl~~L~~F~~~rG~~l~~P~i~gk~lDLy~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~-~~~~ 82 (122)
T 2eqy_A 4 GSSGEAQTRVKLNFLDQIAKYWELQGSTLKIPHVERKILDLFQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPG-KAVG 82 (122)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHHHHHTCCCCCCBSSSSBCCHHHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSS-SHHH
T ss_pred cccccccchHHHHHHHHHHHHHHHcCCCCCCCeECCEeccHHHHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCC-CcHH
Confidence 567788889999999999999999999999999999999999999999999999999999999999999999975 5678
Q ss_pred HHHHHHHHHhhHHHHHHH
Q 027313 104 FVLRKHYLTLLYHYEQVH 121 (225)
Q Consensus 104 ~~LK~~Y~kyLlpYE~~~ 121 (225)
..||++|+|||++||++.
T Consensus 83 ~~Lr~~Y~k~L~~yE~~~ 100 (122)
T 2eqy_A 83 SHIRGHYERILNPYNLFL 100 (122)
T ss_dssp HHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 899999999999999965
No 3
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=99.95 E-value=2e-28 Score=193.93 Aligned_cols=97 Identities=26% Similarity=0.524 Sum_probs=91.3
Q ss_pred CCCCcccCChhHHHHHHHHHHhhcCCCCCCCeeCCeecchhhhHHHHHhcCcchhhccccChHHHHhhhCCCCCCCcHHH
Q 027313 25 SSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASF 104 (225)
Q Consensus 25 ~s~e~~~~ere~Fl~~L~~F~~~rG~plk~P~I~GK~VDLy~LY~~V~~~GGy~~Vt~~k~W~eVA~~LGlp~~~t~as~ 104 (225)
++.++.+++++.|+++|.+||+.+|+|+++|.|+|++||||+||++|+++|||++||++++|.+||+.||+|++ +++++
T Consensus 3 nele~~~r~~~~Fl~~L~~F~~~rG~~l~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~-~~a~~ 81 (117)
T 2jrz_A 3 NELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPG-KNIGS 81 (117)
T ss_dssp HHHHTSTTTHHHHHHHHHHHHHTTTSCCCCCEETTEECCHHHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTT-CTHHH
T ss_pred cccccchhHHHHHHHHHHHHHHHcCCCCCCCeECCEeecHHHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCC-CcHHH
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999987 78899
Q ss_pred HHHHHHHHhhHHHHHHHh
Q 027313 105 VLRKHYLTLLYHYEQVHF 122 (225)
Q Consensus 105 ~LK~~Y~kyLlpYE~~~~ 122 (225)
.||++|++||+|||++..
T Consensus 82 ~Lk~~Y~k~L~~yE~~~~ 99 (117)
T 2jrz_A 82 LLRSHYERIVYPYEMYQS 99 (117)
T ss_dssp HHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999999854
No 4
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=99.95 E-value=5.4e-28 Score=193.21 Aligned_cols=100 Identities=30% Similarity=0.462 Sum_probs=93.0
Q ss_pred CChhHHHHHHHHHHhhcCCCC-CCCeeCCeecchhhhHHHHHhcCcchhhccccChHHHHhhhCCCCCCCcHHHHHHHHH
Q 027313 32 KDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHY 110 (225)
Q Consensus 32 ~ere~Fl~~L~~F~~~rG~pl-k~P~I~GK~VDLy~LY~~V~~~GGy~~Vt~~k~W~eVA~~LGlp~~~t~as~~LK~~Y 110 (225)
.+++.|+++|.+||+.+|+|+ ++|.|+|++||||+||++|+++|||++||++++|.+||+.||+|+ +++++..||++|
T Consensus 20 ~~~~~Fl~~L~~F~~~rG~~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~s~~~~Lk~~Y 98 (125)
T 2cxy_A 20 PERKLWVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGT-SSSAASSLKKQY 98 (125)
T ss_dssp TTHHHHHHHHHHHHHHTTCCCCBCCEETTEECCHHHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCS-SHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHcCCCCCCCeeECCEeecHHHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCC-CCcHHHHHHHHH
Confidence 577789999999999999999 799999999999999999999999999999999999999999996 478899999999
Q ss_pred HHhhHHHHHHHhhhcCCCCCCC
Q 027313 111 LTLLYHYEQVHFFKMQGPPCVP 132 (225)
Q Consensus 111 ~kyLlpYE~~~~~ge~~~~~~p 132 (225)
+|||++||+++..|+++|+..+
T Consensus 99 ~k~L~~yE~~~~~g~~~p~~i~ 120 (125)
T 2cxy_A 99 IQYLFAFECKIERGEEPPPEVF 120 (125)
T ss_dssp HHHTHHHHHHHHHCCCCCCSCC
T ss_pred HHHHHHHHHHHHcCCCCChhHh
Confidence 9999999999988988665543
No 5
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.95 E-value=2.4e-28 Score=189.68 Aligned_cols=97 Identities=26% Similarity=0.484 Sum_probs=91.3
Q ss_pred CCCCCcccCChhHHHHHHHHHHhhcCCCCCCCeeCCeecchhhhHHHHHhcCcchhhccccChHHHHhhhCCCCCCCcHH
Q 027313 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSAS 103 (225)
Q Consensus 24 ~~s~e~~~~ere~Fl~~L~~F~~~rG~plk~P~I~GK~VDLy~LY~~V~~~GGy~~Vt~~k~W~eVA~~LGlp~~~t~as 103 (225)
.++.++.+++++.|+++|.+||+.+|+|+++|.++|++||||+||.+|+++|||++||++++|.+||+.||+|++ ++++
T Consensus 6 L~el~~~~~~~~~F~~~L~~F~~~~g~~l~~P~i~gk~vdL~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~-~~~~ 84 (107)
T 2lm1_A 6 LNELEAKTRVKLNFLDQIAKFWELQGSSLKIPMVERKALDLYTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSS-KSVG 84 (107)
T ss_dssp SCSSCCSSHHHHHHHHHHHHHHTTTCCCCSCCCTTTSSCCHHHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCC-HHHH
T ss_pred hhhccCCchHHHHHHHHHHHHHHHcCCCCCCCeECCEeecHHHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCC-CcHH
Confidence 355667778999999999999999999999999999999999999999999999999999999999999999975 7789
Q ss_pred HHHHHHHHHhhHHHHHHH
Q 027313 104 FVLRKHYLTLLYHYEQVH 121 (225)
Q Consensus 104 ~~LK~~Y~kyLlpYE~~~ 121 (225)
..||++|++||+|||++.
T Consensus 85 ~~lk~~Y~k~L~~yE~~~ 102 (107)
T 2lm1_A 85 ATLKAHYERILHPFEVYT 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 999999999999999985
No 6
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=99.95 E-value=2.5e-28 Score=186.21 Aligned_cols=92 Identities=35% Similarity=0.597 Sum_probs=87.0
Q ss_pred cccCChhHHHHHHHHHHhhcCCCCCCCeeCCeecchhhhHHHHHhcCcchhhccccChHHHHhhhCCCCCCCcHHHHHHH
Q 027313 29 DVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRK 108 (225)
Q Consensus 29 ~~~~ere~Fl~~L~~F~~~rG~plk~P~I~GK~VDLy~LY~~V~~~GGy~~Vt~~k~W~eVA~~LGlp~~~t~as~~LK~ 108 (225)
+.+++++.|+++|.+||+++|+|+++|.|+|++||||+||++|+++|||++||++++|.+||+.||+|+++ +++..||+
T Consensus 3 ~~~r~~~~F~~~L~~F~~~~g~~l~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~-~~~~~Lk~ 81 (96)
T 2jxj_A 3 LGSRVRLDFLDQLAKFWELQGSTLKIPVVERKILDLYALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGK-GTGSLLKS 81 (96)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCCCCCCEETTEECCCHHHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCS-CHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHcCCCCCCCcCCCEeccHHHHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcC-cHHHHHHH
Confidence 34688999999999999999999999999999999999999999999999999999999999999999876 57779999
Q ss_pred HHHHhhHHHHHHH
Q 027313 109 HYLTLLYHYEQVH 121 (225)
Q Consensus 109 ~Y~kyLlpYE~~~ 121 (225)
+|++||++||++.
T Consensus 82 ~Y~k~L~~yE~~~ 94 (96)
T 2jxj_A 82 HYERILYPYELFQ 94 (96)
T ss_dssp HHTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999974
No 7
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=99.94 E-value=1.5e-27 Score=190.74 Aligned_cols=89 Identities=22% Similarity=0.437 Sum_probs=85.6
Q ss_pred ChhHHHHHHHHHHhhcCCCC-CCCeeCCeecchhhhHHHHHhcCcchhhccccChHHHHhhhCCCCCCCcHHHHHHHHHH
Q 027313 33 DPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYL 111 (225)
Q Consensus 33 ere~Fl~~L~~F~~~rG~pl-k~P~I~GK~VDLy~LY~~V~~~GGy~~Vt~~k~W~eVA~~LGlp~~~t~as~~LK~~Y~ 111 (225)
....|+++|.+||++||+|+ ++|.|+|++||||+||+.|+++|||++||++++|++||+.||+|++++++++.||++|+
T Consensus 12 ~~~~Fl~~L~~F~~~rGtpl~~~P~i~gk~lDL~~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~ 91 (121)
T 2rq5_A 12 PNVQRLACIKKHLRSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYC 91 (121)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSCCEETTEECCHHHHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCCCCCcCCCEeccHHHHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHH
Confidence 56789999999999999999 59999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHH
Q 027313 112 TLLYHYEQVH 121 (225)
Q Consensus 112 kyLlpYE~~~ 121 (225)
|||++||++.
T Consensus 92 k~L~~YE~~~ 101 (121)
T 2rq5_A 92 QYLLSYDSLS 101 (121)
T ss_dssp TTHHHHHHCC
T ss_pred HHhHHHHCcC
Confidence 9999999864
No 8
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=99.94 E-value=2.6e-27 Score=189.74 Aligned_cols=91 Identities=33% Similarity=0.511 Sum_probs=88.5
Q ss_pred CChhHHHHHHHHHHhhcCCCC-CCCeeCCeecchhhhHHHHHhcCcchhhccccChHHHHhhhCCCCCCCcHHHHHHHHH
Q 027313 32 KDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHY 110 (225)
Q Consensus 32 ~ere~Fl~~L~~F~~~rG~pl-k~P~I~GK~VDLy~LY~~V~~~GGy~~Vt~~k~W~eVA~~LGlp~~~t~as~~LK~~Y 110 (225)
++++.|+++|.+||+.+|+|+ ++|.|+|++||||+||++|+++|||++||++++|.+||+.||+|+++++++..||++|
T Consensus 21 ~~~~~Fl~~L~~F~~~rG~~l~~~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y 100 (128)
T 1c20_A 21 PKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQY 100 (128)
T ss_dssp HHHHHHHHHHHHHHTTTSSCSSCCCEETTEECCHHHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCccceeECCEeecHHHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHH
Confidence 689999999999999999999 7999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHh
Q 027313 111 LTLLYHYEQVHF 122 (225)
Q Consensus 111 ~kyLlpYE~~~~ 122 (225)
++||++||++..
T Consensus 101 ~k~L~~yE~~~~ 112 (128)
T 1c20_A 101 MKYLYPYECEKK 112 (128)
T ss_dssp HHHTHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999874
No 9
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=99.93 E-value=7.9e-27 Score=186.76 Aligned_cols=91 Identities=24% Similarity=0.388 Sum_probs=84.4
Q ss_pred CCcccCChhHHHHHHHHHHhhcCCCC-CCCeeCCeecchhhhHHHHHhcCcchhhccccChHHHHhhhCCCCCCCcHHHH
Q 027313 27 HEDVSKDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFV 105 (225)
Q Consensus 27 ~e~~~~ere~Fl~~L~~F~~~rG~pl-k~P~I~GK~VDLy~LY~~V~~~GGy~~Vt~~k~W~eVA~~LGlp~~~t~as~~ 105 (225)
+++..++++.|+++|.+||+++|+|+ ++|.|+|++||||+||.+|+++|||++||++++|++||+.||+|+ +..
T Consensus 12 ~~~~~~~~~~Fl~~L~~F~~~rG~pl~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~-----~~~ 86 (123)
T 1kkx_A 12 HGSNNKQYELFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-----YQQ 86 (123)
T ss_dssp ---CCCHHHHHHHHHHHHHHHTTCSSSSCCCCSSSSCCTTHHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCC-----HHH
T ss_pred cCCcchhHHHHHHHHHHHHHHcCCCCCcCceECCEeecHHHHHHHHHHhcCHHhccccccHHHHHHHHCCCh-----HHH
Confidence 45678899999999999999999999 799999999999999999999999999999999999999999997 579
Q ss_pred HHHHHHHhhHHHHHHHh
Q 027313 106 LRKHYLTLLYHYEQVHF 122 (225)
Q Consensus 106 LK~~Y~kyLlpYE~~~~ 122 (225)
||++|+|||+|||++..
T Consensus 87 Lr~~Y~k~L~~yE~~~~ 103 (123)
T 1kkx_A 87 LESIYFRILLPYERHMI 103 (123)
T ss_dssp HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999654
No 10
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.93 E-value=6.5e-27 Score=184.80 Aligned_cols=93 Identities=25% Similarity=0.347 Sum_probs=87.7
Q ss_pred CCCCCcccCChhHHHHHHHHHHhhcCCCC-CCCeeCCeecchhhhHHHHHhcCcchhhccccChHHHHhhhCCCCCCCcH
Q 027313 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSA 102 (225)
Q Consensus 24 ~~s~e~~~~ere~Fl~~L~~F~~~rG~pl-k~P~I~GK~VDLy~LY~~V~~~GGy~~Vt~~k~W~eVA~~LGlp~~~t~a 102 (225)
.++.|...++++.|+++|.+||+++|+|+ ++|.|+|++||||+||.+|+++|||++||++++|.+||+.||+|+
T Consensus 10 ln~~e~~~~~~~~F~~~L~~F~~~~G~pl~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~----- 84 (116)
T 2li6_A 10 KISTELNNKQYELFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMVAQRLQISD----- 84 (116)
T ss_dssp CCCSSSSHHHHHHHHHHHHHHHHTTTSCCSSCCCCBSCCCSTTHHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-----
T ss_pred hhcccccchhHHHHHHHHHHHHHHcCCCCCCCceECCEeecHHHHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-----
Confidence 46777888999999999999999999999 799999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHHHhhHHHHHHH
Q 027313 103 SFVLRKHYLTLLYHYEQVH 121 (225)
Q Consensus 103 s~~LK~~Y~kyLlpYE~~~ 121 (225)
+..||++|++||+|||++.
T Consensus 85 ~~~Lr~~Y~k~L~~yE~~~ 103 (116)
T 2li6_A 85 YQQLESIYFRILLPYERHM 103 (116)
T ss_dssp TTHHHHHHHHHHSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4599999999999999965
No 11
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=99.93 E-value=1.7e-26 Score=189.15 Aligned_cols=89 Identities=37% Similarity=0.614 Sum_probs=86.6
Q ss_pred ChhHHHHHHHHHHhhcCCCC-CCCeeCCeecchhhhHHHHHhcCcchhhccccChHHHHhhhCCCCCCCcHHHHHHHHHH
Q 027313 33 DPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYL 111 (225)
Q Consensus 33 ere~Fl~~L~~F~~~rG~pl-k~P~I~GK~VDLy~LY~~V~~~GGy~~Vt~~k~W~eVA~~LGlp~~~t~as~~LK~~Y~ 111 (225)
+++.|+++|.+||+.+|+|+ ++|.|+|++||||+||.+|+++|||++||++++|.+||+.||+|+++++++..||++|+
T Consensus 34 ~~~~Fl~~L~~F~~~rG~pl~~~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~ 113 (145)
T 2kk0_A 34 KRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYM 113 (145)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSCCEETTEECCHHHHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCCCccceeECCEEecHHHHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHH
Confidence 48999999999999999999 79999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHH
Q 027313 112 TLLYHYEQVH 121 (225)
Q Consensus 112 kyLlpYE~~~ 121 (225)
+||++||++.
T Consensus 114 k~L~~yE~~~ 123 (145)
T 2kk0_A 114 KYLYPYECEK 123 (145)
T ss_dssp HHSSHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999985
No 12
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=85.42 E-value=0.66 Score=30.34 Aligned_cols=39 Identities=18% Similarity=0.224 Sum_probs=28.3
Q ss_pred hhHHHHHhcCcchhhccccChHHHHhhhCCCCCCCcHHHHHHHHHHHhhHH
Q 027313 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (225)
Q Consensus 66 ~LY~~V~~~GGy~~Vt~~k~W~eVA~~LGlp~~~t~as~~LK~~Y~kyLlp 116 (225)
.|...|...| .+.|..||..|+ .. .+.+.+..|.++|.|
T Consensus 13 ~L~~~v~~~G-------~~~W~~Ia~~~~--~R---t~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 13 RLIKLVQKYG-------PKRWSVIAKHLK--GR---IGKQCRERWHNHLNP 51 (52)
T ss_dssp HHHHHHHHHC-------TTCHHHHHTTST--TC---CHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHC-------cChHHHHHHHcC--CC---CHHHHHHHHHHHcCc
Confidence 4566777776 246999999974 22 234899999999865
No 13
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.16 E-value=1.1 Score=31.17 Aligned_cols=39 Identities=10% Similarity=0.306 Sum_probs=28.9
Q ss_pred hhHHHHHhcCcchhhccccChHHHHhhhCCCCCCCcHHHHHHHHHHHhhHH
Q 027313 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (225)
Q Consensus 66 ~LY~~V~~~GGy~~Vt~~k~W~eVA~~LGlp~~~t~as~~LK~~Y~kyLlp 116 (225)
.|...|...| .+.|..||..|+- . .+.+.+..|.++|.|
T Consensus 19 ~L~~~v~~~G-------~~~W~~Ia~~l~~--R---t~~qcr~Rw~~~L~p 57 (70)
T 2dim_A 19 ILKAAVMKYG-------KNQWSRIASLLHR--K---SAKQCKARWYEWLDP 57 (70)
T ss_dssp HHHHHHHHTC-------SSCHHHHHHHSTT--C---CHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHC-------cCCHHHHHHHhcC--C---CHHHHHHHHHHHcCC
Confidence 4667777777 2479999999862 1 234899999999865
No 14
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=82.78 E-value=1.2 Score=29.08 Aligned_cols=39 Identities=10% Similarity=0.231 Sum_probs=28.2
Q ss_pred hhHHHHHhcCcchhhccccChHHHHhhhCCCCCCCcHHHHHHHHHHHhhHH
Q 027313 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (225)
Q Consensus 66 ~LY~~V~~~GGy~~Vt~~k~W~eVA~~LGlp~~~t~as~~LK~~Y~kyLlp 116 (225)
.|...|...|. +.|..||..|+ .. .+.+.+..|.++|.|
T Consensus 13 ~L~~~v~~~G~-------~~W~~Ia~~~~--~R---t~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 13 KLKKLVEQNGT-------DDWKVIANYLP--NR---TDVQCQHRWQKVLNP 51 (52)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHTST--TC---CHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCC-------CCHHHHHHHcC--CC---CHHHHHHHHHHHcCc
Confidence 46677777662 47999999974 22 234899999999865
No 15
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=81.87 E-value=1.6 Score=30.16 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=30.5
Q ss_pred hhHHHHHhcCcchhhccccChHHHHhhhCCCCCCCcHHHHHHHHHHHhhHH
Q 027313 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (225)
Q Consensus 66 ~LY~~V~~~GGy~~Vt~~k~W~eVA~~LGlp~~~t~as~~LK~~Y~kyLlp 116 (225)
.|...|...|. +.|..||..+++... .+.+++..|.++|.|
T Consensus 20 ~L~~~v~~~G~-------~~W~~Ia~~~~~~~R---t~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 20 NLRSGVRKYGE-------GNWSKILLHYKFNNR---TSVMLKDRWRTMKKL 60 (69)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHHSCCSSC---CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCC-------CcHHHHHHHcCcCCC---CHHHHHHHHHHHcCC
Confidence 46677887772 379999999976322 234899999999876
No 16
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=81.73 E-value=1.6 Score=29.58 Aligned_cols=38 Identities=18% Similarity=0.279 Sum_probs=27.7
Q ss_pred hhHHHHHhcCcchhhccccChHHHHhhhCCCCCCCcHHHHHHHHHHHhhH
Q 027313 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (225)
Q Consensus 66 ~LY~~V~~~GGy~~Vt~~k~W~eVA~~LGlp~~~t~as~~LK~~Y~kyLl 115 (225)
.|-.+|...|- +.|..||..++-- .+.+.+..|.++|.
T Consensus 18 ~L~~~v~~~G~-------~~W~~Ia~~~~~R-----t~~qcr~r~~~~l~ 55 (60)
T 1x41_A 18 ALLEAVMDCGF-------GNWQDVANQMCTK-----TKEECEKHYMKYFS 55 (60)
T ss_dssp HHHHHHHHTCT-------TCHHHHHHHHTTS-----CHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCc-------CcHHHHHHHhCCC-----CHHHHHHHHHHHcc
Confidence 35567777762 4799999999431 23489999999886
No 17
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=79.27 E-value=1.8 Score=28.98 Aligned_cols=39 Identities=15% Similarity=0.240 Sum_probs=28.0
Q ss_pred hhHHHHHhcCcchhhccccChHHHHhhhCCCCCCCcHHHHHHHHHHHhhHH
Q 027313 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (225)
Q Consensus 66 ~LY~~V~~~GGy~~Vt~~k~W~eVA~~LGlp~~~t~as~~LK~~Y~kyLlp 116 (225)
.|...|...|- +.|..||..|. .. .+.+++..|.++|.|
T Consensus 18 ~L~~~v~~~G~-------~~W~~Ia~~~~--~R---t~~qcr~Rw~~~l~p 56 (60)
T 2d9a_A 18 QLRALVRQFGQ-------QDWKFLASHFP--NR---TDQQCQYRWLRVLSG 56 (60)
T ss_dssp HHHHHHHHTCT-------TCHHHHHHHCS--SS---CHHHHHHHHHHTSCS
T ss_pred HHHHHHHHhCC-------CCHHHHHHHcc--CC---CHHHHHHHHHHHcCC
Confidence 45667777762 47999999974 22 234899999998864
No 18
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=75.23 E-value=3.7 Score=26.84 Aligned_cols=39 Identities=23% Similarity=0.424 Sum_probs=28.2
Q ss_pred hhHHHHHhcCcchhhccccChHHHHhhhCCCCCCCcHHHHHHHHHHHhh
Q 027313 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLL 114 (225)
Q Consensus 66 ~LY~~V~~~GGy~~Vt~~k~W~eVA~~LGlp~~~t~as~~LK~~Y~kyL 114 (225)
.|...|...| .+.|..||..+++... .+.+++..|.+++
T Consensus 12 ~L~~~v~~~G-------~~~W~~Ia~~~~~~~R---t~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 12 NLRSGVRKYG-------EGNWSKILLHYKFNNR---TSVMLKDRWRTMK 50 (53)
T ss_dssp HHHHHHHHHC-------TTCHHHHHHHSCCSSC---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-------cCCHHHHHHHcCCCCC---CHHHHHHHHHHHH
Confidence 4667788777 2379999999976422 2348899888876
No 19
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=73.99 E-value=3.4 Score=27.75 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=28.5
Q ss_pred hhHHHHHhcCcchhhccccChHHHHhhhCCCCCCCcHHHHHHHHHHHhhH
Q 027313 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (225)
Q Consensus 66 ~LY~~V~~~GGy~~Vt~~k~W~eVA~~LGlp~~~t~as~~LK~~Y~kyLl 115 (225)
.|...|.+.|- +.|..||+.++...+ +.+.+..|.+++.
T Consensus 19 ~L~~~v~~~G~-------~~W~~IA~~~~~~Rt----~~qcr~r~~~~~~ 57 (58)
T 2elk_A 19 LLIDACETLGL-------GNWADIADYVGNART----KEECRDHYLKTYI 57 (58)
T ss_dssp HHHHHHHHTTT-------TCHHHHHHHHCSSCC----HHHHHHHHHHHTT
T ss_pred HHHHHHHHHCc-------CCHHHHHHHHCCCCC----HHHHHHHHHHHcc
Confidence 56678887772 479999999974322 2488999988764
No 20
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.95 E-value=4.1 Score=28.41 Aligned_cols=45 Identities=9% Similarity=0.099 Sum_probs=30.5
Q ss_pred hhHHHHHhcCcchhhccccChHHHHhhhCCCCCCCcHHHHHHHHHHHhhHHH
Q 027313 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHY 117 (225)
Q Consensus 66 ~LY~~V~~~GGy~~Vt~~k~W~eVA~~LGlp~~~t~as~~LK~~Y~kyLlpY 117 (225)
.|-..|...|.-. +..+.|..||..|+-- ...+++.+|.+||.+-
T Consensus 18 ~L~~~v~~~g~~~--~~~~~W~~IA~~~~~R-----t~~qcr~r~~~~l~~~ 62 (75)
T 2yum_A 18 KLEQLLIKYPPEE--VESRRWQKIADELGNR-----TAKQVASQVQKYFIKL 62 (75)
T ss_dssp HHHHHHHHSCCCS--CHHHHHHHHHHHHSSS-----CHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCCC--CCcccHHHHHHHhCCC-----CHHHHHHHHHHHHHHH
Confidence 4566777777211 1125799999998532 2348999999999763
No 21
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=69.63 E-value=6.8 Score=26.97 Aligned_cols=40 Identities=10% Similarity=0.314 Sum_probs=28.8
Q ss_pred hhHHHHHhcCcchhhccccChHHHHhhhCCCCCCCcHHHHHHHHHHHhhH
Q 027313 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (225)
Q Consensus 66 ~LY~~V~~~GGy~~Vt~~k~W~eVA~~LGlp~~~t~as~~LK~~Y~kyLl 115 (225)
.|...|.+.|- +.|..||+.+.+... .+.+++.-|.+++.
T Consensus 21 ~L~~~V~~~G~-------~~W~~Ia~~~~~~~R---t~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 21 WVKAGVQKYGE-------GNWAAISKNYPFVNR---TAVMIKDRWRTMKR 60 (64)
T ss_dssp HHHHHHHHHCT-------TCHHHHHHHSCCSSC---CHHHHHHHHHHHHH
T ss_pred HHHHHHHccCC-------CchHHHHhhcCCCCC---CHHHHHHHHHHHhc
Confidence 46677888773 369999999876543 23488998887764
No 22
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.90 E-value=8.9 Score=26.03 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=27.6
Q ss_pred hhHHHHHhcCcchhhccccChHHHHhhhCCCCCCCcHHHHHHHHHHHhhHHHHH
Q 027313 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQ 119 (225)
Q Consensus 66 ~LY~~V~~~GGy~~Vt~~k~W~eVA~~LGlp~~~t~as~~LK~~Y~kyLlpYE~ 119 (225)
.|...|...| +.|..||...| . .+.++|..|.++|.+--.
T Consensus 19 ~L~~~~~~~g--------~~W~~Ia~~~g---R---t~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 19 KLLHLAKLMP--------TQWRTIAPIIG---R---TAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp HHHHHHHHCT--------TCHHHHHHHHS---S---CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--------CCHHHHhcccC---c---CHHHHHHHHHHHhChHhc
Confidence 3455566555 26999999544 1 234899999999988543
No 23
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=65.93 E-value=9.8 Score=26.37 Aligned_cols=41 Identities=5% Similarity=0.141 Sum_probs=29.3
Q ss_pred hhHHHHHhcCcchhhccccChHHHHhhhCCCCCCCcHHHHHHHHHHHhhHHHHH
Q 027313 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQ 119 (225)
Q Consensus 66 ~LY~~V~~~GGy~~Vt~~k~W~eVA~~LGlp~~~t~as~~LK~~Y~kyLlpYE~ 119 (225)
.|...|...|- .|..||..|+-- ...++|..|.+||.+-..
T Consensus 19 ~l~~~~~~~G~--------~W~~Ia~~~~~R-----t~~q~k~r~~~~l~~~~~ 59 (72)
T 2cu7_A 19 LFEQGLAKFGR--------RWTKISKLIGSR-----TVLQVKSYARQYFKNKVK 59 (72)
T ss_dssp HHHHHHHHTCS--------CHHHHHHHHSSS-----CHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCc--------CHHHHHHHcCCC-----CHHHHHHHHHHHHHHHHh
Confidence 45566777663 799999987432 234899999999877543
No 24
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=64.57 E-value=5.7 Score=29.51 Aligned_cols=38 Identities=13% Similarity=0.198 Sum_probs=27.5
Q ss_pred hhHHHHHhcCcchhhccccChHHHHhhhCCCCCCCcHHHHHHHHHHHhhH
Q 027313 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (225)
Q Consensus 66 ~LY~~V~~~GGy~~Vt~~k~W~eVA~~LGlp~~~t~as~~LK~~Y~kyLl 115 (225)
.|-..|...|. +.|..||..|+-- .+.+.+..|.++|.
T Consensus 11 ~L~~~v~~~g~-------~~W~~Ia~~~~~R-----t~~qcr~Rw~~~L~ 48 (107)
T 2k9n_A 11 KLQQLVMRYGA-------KDWIRISQLMITR-----NPRQCRERWNNYIN 48 (107)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHHTTTS-----CHHHHHHHHHHHSS
T ss_pred HHHHHHHHHCC-------CCHHHHhhhcCCC-----CHHHHHHHHHHHHc
Confidence 46677888874 4799999998521 23478888888775
No 25
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=60.31 E-value=7.7 Score=27.87 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=26.2
Q ss_pred hhhHHHHHhcCcchhhccccChHHHHhhhCCCCCCCcHHHHHHHHHHHh
Q 027313 65 HVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTL 113 (225)
Q Consensus 65 y~LY~~V~~~GGy~~Vt~~k~W~eVA~~LGlp~~~t~as~~LK~~Y~ky 113 (225)
-.|..+|...| +.|..||+.++-- ...+.+.+|.++
T Consensus 27 ~~Ll~~v~~~G--------~~W~~IA~~v~~R-----T~~qcr~r~~~~ 62 (79)
T 2yus_A 27 LLLLEALEMYK--------DDWNKVSEHVGSR-----TQDECILHFLRL 62 (79)
T ss_dssp HHHHHHHHHSS--------SCHHHHHHHHSSC-----CHHHHHHHHTTS
T ss_pred HHHHHHHHHhC--------CCHHHHHHHcCCC-----CHHHHHHHHHHh
Confidence 34567788887 4799999999731 234888888776
No 26
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=58.85 E-value=6.8 Score=28.72 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=26.9
Q ss_pred hhHHHHHhcCcchhhccccChHHHHhhhCCCCCCCcHHHHHHHHHHHhhH
Q 027313 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (225)
Q Consensus 66 ~LY~~V~~~GGy~~Vt~~k~W~eVA~~LGlp~~~t~as~~LK~~Y~kyLl 115 (225)
.|-..|...|. +.|..||..|+ .. .+.+.+..|.++|.
T Consensus 14 ~L~~~v~~~g~-------~~W~~Ia~~l~--~R---t~~qcr~Rw~~~l~ 51 (105)
T 1gv2_A 14 RVIKLVQKYGP-------KRWSVIAKHLK--GR---IGKQCRERWHNHLN 51 (105)
T ss_dssp HHHHHHHHHCT-------TCHHHHHTTST--TC---CHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCC-------CcHHHHhhhhc--CC---CHHHHHHHHHhccC
Confidence 46677777774 46999999873 22 23478888888874
No 27
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=49.79 E-value=15 Score=27.94 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=27.8
Q ss_pred hhhHHHHHhcCcchhhccccChHHHHhhhCCCCCCCcHHHHHHHHHHHhhH
Q 027313 65 HVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (225)
Q Consensus 65 y~LY~~V~~~GGy~~Vt~~k~W~eVA~~LGlp~~~t~as~~LK~~Y~kyLl 115 (225)
-.|-..|...|. +.|..||..|+- . .+.+.+..|.++|.
T Consensus 36 ~~L~~~v~~~g~-------~~W~~Ia~~l~~--R---t~~qcr~Rw~~~l~ 74 (128)
T 1h8a_C 36 QRVIEHVQKYGP-------KRWSDIAKHLKG--R---IGKQCRERWHNHLN 74 (128)
T ss_dssp HHHHHHHHHTCS-------CCHHHHHHHSSS--C---CHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCC-------CCHHHHHHHhcC--C---cHHHHHHHHHHhcc
Confidence 356677887774 469999999842 1 23488888888874
No 28
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=41.51 E-value=29 Score=25.50 Aligned_cols=42 Identities=14% Similarity=0.350 Sum_probs=29.8
Q ss_pred hhhHHHHHhcCcchhhccccChHHHHhhhCCCCCCCcHHHHHHHHHHHhhHHHHH
Q 027313 65 HVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQ 119 (225)
Q Consensus 65 y~LY~~V~~~GGy~~Vt~~k~W~eVA~~LGlp~~~t~as~~LK~~Y~kyLlpYE~ 119 (225)
..|...|...| +.|..||..| |.. ...+++..|..++..-..
T Consensus 62 ~~L~~~~~~~G--------~~W~~Ia~~l--~gR---t~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 62 MLLDQKYAEYG--------PKWNKISKFL--KNR---SDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp HHHHHHHHHTC--------SCHHHHHHHH--SSS---CHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhC--------cCHHHHHHHC--CCC---CHHHHHHHHHHHHhhHHH
Confidence 35677788887 3799999987 322 234899999988766443
No 29
>2lo0_A Uncharacterized protein; dimerization, homodimerization, protein binding; NMR {Aspergillus fumigatus}
Probab=41.47 E-value=15 Score=26.70 Aligned_cols=40 Identities=20% Similarity=0.312 Sum_probs=16.3
Q ss_pred hCCCccccCCCCCCCCCCC--C-cccCChhHHHHHHHHHHhhc
Q 027313 9 TKGRSVVEDKLYPAPLSSH--E-DVSKDPIVFWDTLRRFHFIM 48 (225)
Q Consensus 9 ~~~~si~~~~~~p~P~~s~--e-~~~~ere~Fl~~L~~F~~~r 48 (225)
+.++++.++.....+-... + .-.-+-+.|+++|+.|+++|
T Consensus 11 ~~~~~~~~p~~~e~~~~a~g~sg~~vl~TeeFW~DL~gFL~qR 53 (75)
T 2lo0_A 11 GERASAEQKESYEPPKPAVGPSGESVVATEAFWDDLQGFLEQR 53 (75)
T ss_dssp --------------------CCSSTTTTSHHHHHHHHHHHHHH
T ss_pred CccccccCCCccccccccccchHHHHHhHHHHHHHHHHHHHHh
Confidence 3445555555444321111 1 22347889999999999987
No 30
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=39.47 E-value=30 Score=25.17 Aligned_cols=38 Identities=13% Similarity=0.486 Sum_probs=26.8
Q ss_pred hhhHHHHHhcCcchhhccccChHHHHhhhCCCCCCCcHHHHHHHHHHHhhH
Q 027313 65 HVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (225)
Q Consensus 65 y~LY~~V~~~GGy~~Vt~~k~W~eVA~~LGlp~~~t~as~~LK~~Y~kyLl 115 (225)
..|...|...| +.|..||+.| |.. ...+++..|..+|.
T Consensus 65 ~~L~~~~~~~G--------~~W~~Ia~~l--~gR---t~~~~k~rw~~~~~ 102 (105)
T 1gv2_A 65 RIIYQAHKRLG--------NRWAEIAKLL--PGR---TDNAIKNHWNSTMR 102 (105)
T ss_dssp HHHHHHHHHHS--------SCHHHHHTTC--TTC---CHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhC--------CCHHHHHHHc--CCC---CHHHHHHHHHHHHh
Confidence 45667777777 3799999876 332 23489999987764
No 31
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=36.72 E-value=31 Score=26.29 Aligned_cols=39 Identities=8% Similarity=0.296 Sum_probs=28.3
Q ss_pred hhhHHHHHhcCcchhhccccChHHHHhhhCCCCCCCcHHHHHHHHHHHhhHH
Q 027313 65 HVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (225)
Q Consensus 65 y~LY~~V~~~GGy~~Vt~~k~W~eVA~~LGlp~~~t~as~~LK~~Y~kyLlp 116 (225)
..|...|...|+ .|..||..|. .. ...+++..|..+|.+
T Consensus 63 ~~L~~~~~~~G~--------~W~~Ia~~l~--gR---t~~~~k~rw~~~l~~ 101 (131)
T 3zqc_A 63 ETIFRNYLKLGS--------KWSVIAKLIP--GR---TDNAIKNRWNSSISK 101 (131)
T ss_dssp HHHHHHHHHSCS--------CHHHHTTTST--TC---CHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHCc--------CHHHHHHHcC--CC---CHHHHHHHHHHHHHH
Confidence 356677888884 6999999764 22 234899999988865
No 32
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=34.66 E-value=31 Score=26.18 Aligned_cols=37 Identities=19% Similarity=0.353 Sum_probs=25.8
Q ss_pred hhHHHHHhcCcchhhccccChHHHHhhhCCCCCCCcHHHHHHHHHHHhhH
Q 027313 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (225)
Q Consensus 66 ~LY~~V~~~GGy~~Vt~~k~W~eVA~~LGlp~~~t~as~~LK~~Y~kyLl 115 (225)
.|-..|...|. .|..||..|+- . .+.+.+..|.++|.
T Consensus 21 ~L~~~v~~~G~--------~W~~Ia~~~~~--R---t~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 21 MLKRAVAQHGS--------DWKMIAATFPN--R---NARQCRDRWKNYLA 57 (126)
T ss_dssp HHHHHHHHHTT--------CHHHHHHTCTT--C---CHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCC--------CHHHHHHHcCC--C---CHHHHHHHHhhhcc
Confidence 46677777763 59999998742 1 22488888888873
No 33
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=31.64 E-value=37 Score=26.61 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=27.4
Q ss_pred hhhHHHHHhcCcchhhccccChHHHHhhhCCCCCCCcHHHHHHHHHHHhhH
Q 027313 65 HVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (225)
Q Consensus 65 y~LY~~V~~~GGy~~Vt~~k~W~eVA~~LGlp~~~t~as~~LK~~Y~kyLl 115 (225)
-.|...|...|. +.|..||..|. .. .+.+.+..|.++|.
T Consensus 67 ~~L~~~v~~~g~-------~~W~~Ia~~l~--~R---t~~qcr~Rw~~~l~ 105 (159)
T 1h89_C 67 QRVIKLVQKYGP-------KRWSVIAKHLK--GR---IGKQCRERWHNHLN 105 (159)
T ss_dssp HHHHHHHHHHCS-------CCHHHHHHTST--TC---CHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCc-------ccHHHHHHHcC--CC---CHHHHHHHHHHHhC
Confidence 356677777774 46999999873 22 23488888888873
No 34
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=31.46 E-value=58 Score=22.83 Aligned_cols=40 Identities=10% Similarity=0.062 Sum_probs=25.4
Q ss_pred hHHHHHhcCcchhhccccChHHHHhhhCCCCCCCcHHHHHHHHHHHhhHH
Q 027313 67 LYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (225)
Q Consensus 67 LY~~V~~~GGy~~Vt~~k~W~eVA~~LGlp~~~t~as~~LK~~Y~kyLlp 116 (225)
|=+++...++-. .+.|..||..+| . ....++++|..+...
T Consensus 19 fe~al~~~p~~t----~~RW~~IA~~lg--R----t~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 19 LTRSMVKFPGGT----PGRWEKIAHELG--R----SVTDVTTKAKQLKDS 58 (72)
T ss_dssp HHHHHHHSCTTC----TTHHHHHHHHHT--S----CHHHHHHHHHHHHHS
T ss_pred HHHHHHHCCCCC----CcHHHHHHHHhC--C----CHHHHHHHHHHHHHh
Confidence 334555554321 357999999986 1 234888888876544
No 35
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=30.76 E-value=41 Score=23.75 Aligned_cols=40 Identities=10% Similarity=0.056 Sum_probs=25.6
Q ss_pred hHHHHHhcCcchhhccccChHHHHhhhCCCCCCCcHHHHHHHHHHHhhH
Q 027313 67 LYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (225)
Q Consensus 67 LY~~V~~~GGy~~Vt~~k~W~eVA~~LGlp~~~t~as~~LK~~Y~kyLl 115 (225)
|-.+|...|.- ..+.|..||..++- . ...+++.+|..++.
T Consensus 29 L~~al~~~g~~----~~~rW~~IA~~vpG---R--T~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 29 LELALQQYPRG----SSDCWDKIARCVPS---K--SKEDCIARYKLLVS 68 (73)
T ss_dssp HHHHHHHSCSS----SHHHHHHHGGGCSS---S--CHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCC----CCchHHHHHHHcCC---C--CHHHHHHHHHHHHH
Confidence 33556666521 23589999999852 2 23488999887653
No 36
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=36.53 E-value=11 Score=27.48 Aligned_cols=30 Identities=7% Similarity=0.193 Sum_probs=21.8
Q ss_pred ChHHHHhhhCCCCCCCcHHHHHHHHHHHhhHHHHH
Q 027313 85 KWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQ 119 (225)
Q Consensus 85 ~W~eVA~~LGlp~~~t~as~~LK~~Y~kyLlpYE~ 119 (225)
.|..||..|+-- ...+++..|..+|..+..
T Consensus 37 ~W~~IA~~l~gR-----t~~q~k~r~~~~lrk~~l 66 (89)
T 2ltp_A 37 NWSAIARMVGSK-----TVSQCKNFYFNYKKRQNL 66 (89)
Confidence 599999987522 223889999998876543
No 37
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=28.88 E-value=46 Score=25.05 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHhhcCCCCCCCeeCCeecchhhhHHHHHhcCcchhh---ccccChHHHHhhhC
Q 027313 34 PIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKV---VAEKKWREVGAVFK 94 (225)
Q Consensus 34 re~Fl~~L~~F~~~rG~plk~P~I~GK~VDLy~LY~~V~~~GGy~~V---t~~k~W~eVA~~LG 94 (225)
.+.|+..|...+++||..++ .=||..+|..|.+..=.=.+ -.-+.|..|++.|.
T Consensus 8 ~q~fi~~lk~lLk~RgIkVk-------k~~L~~Ff~fi~~~cPWFp~eGtl~l~~W~kVG~~L~ 64 (94)
T 1bax_A 8 HERYVEQLKQALKTRGVKVK-------YADLLKFFDFVKDTCPWFPQEGTIDIKRWRRVGDCFQ 64 (94)
T ss_pred chHHHHHHHHHHHHcCeeec-------HHHHHHHHHHHHHhCCCcCcCCcccHHHHHHHHHHHH
Confidence 37899999999999999864 34788888888874321111 11347999888775
No 38
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.74 E-value=56 Score=22.26 Aligned_cols=27 Identities=11% Similarity=0.053 Sum_probs=22.5
Q ss_pred CChhHHHHHHHHHHhhcCCCCCCCeeC
Q 027313 32 KDPIVFWDTLRRFHFIMGTKFMIPVIG 58 (225)
Q Consensus 32 ~ere~Fl~~L~~F~~~rG~plk~P~I~ 58 (225)
-.|+..+++|..|+.+.|+-+.-|.+.
T Consensus 29 g~REElvdRLk~Y~~QtGi~lnkP~~~ 55 (58)
T 2do5_A 29 GNREELVERLQSYTRQTGIVLNRPSGP 55 (58)
T ss_dssp SCHHHHHHHHHHHHHHHCCCCCCTTCS
T ss_pred ccHHHHHHHHHHHhhccceeecCCCCC
Confidence 368999999999999999988656543
No 39
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=26.11 E-value=81 Score=22.71 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=27.6
Q ss_pred hhHHHHHhcCcchhhccccChHHHHhhhC--CCCCCCcHHHHHHHHHHHhhH
Q 027313 66 VLYVEATTRGGYEKVVAEKKWREVGAVFK--FSPTTTSASFVLRKHYLTLLY 115 (225)
Q Consensus 66 ~LY~~V~~~GGy~~Vt~~k~W~eVA~~LG--lp~~~t~as~~LK~~Y~kyLl 115 (225)
.|-..|.+.|. ..|..|++... ++.. ....+|..|.++|.
T Consensus 10 ~L~~gv~k~G~-------g~W~~I~~~~~~~~~~R---T~~~lKdrWrnllk 51 (83)
T 2ckx_A 10 ALVEAVEHLGT-------GRWRDVKMRAFDNADHR---TYVDLKDKWKTLVH 51 (83)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHHHCTTCTTS---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-------CCcHHHHHhhccccCCC---CHHHHHHHHHHHHH
Confidence 45567777773 47999999744 3432 23489999988775
No 40
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=26.07 E-value=1.3e+02 Score=23.59 Aligned_cols=55 Identities=20% Similarity=0.319 Sum_probs=39.3
Q ss_pred ChhHHHHHHHHHHhhcCCCCCCCeeCCeecchhhhHHHHHhcC-cchhh--ccccChHHHHhhhC
Q 027313 33 DPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRG-GYEKV--VAEKKWREVGAVFK 94 (225)
Q Consensus 33 ere~Fl~~L~~F~~~rG~plk~P~I~GK~VDLy~LY~~V~~~G-Gy~~V--t~~k~W~eVA~~LG 94 (225)
..+.|+..|...+++||..++. =||-.+|..|.+.- .|..= -.-+.|..|++.|.
T Consensus 6 ~~~~fi~~Lk~~LK~rGvkV~~-------k~L~~Ff~~i~~~cPWFp~eGtLd~~~W~kVG~~L~ 63 (124)
T 2lpy_A 6 QHERYVEQLKQALKTRGVKVKY-------ADLLKFFDFVKDTCPWFPQEGTIDIKRWRRVGDCFQ 63 (124)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCH-------HHHHHHHHHHHHHCTTCTTTCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCeeecH-------HHHHHHHHHHHHhCCCcCCCCccCHHHHHHHHHHHH
Confidence 4678999999999999998743 47788888887532 11110 22457999998883
No 41
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=24.33 E-value=35 Score=32.01 Aligned_cols=38 Identities=29% Similarity=0.444 Sum_probs=25.1
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCceeeeeeh
Q 027313 165 LLLFGLFVGLILFITLQQLHFLFTALRAGLAWLLWNIPRKGLMIIRIH 212 (225)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (225)
|+-||+ |++||- |++..+ .|+||++|-.-| .+.|-|.-
T Consensus 176 LEtygl--~~v~~W-----h~~W~~--~g~aWll~W~rr-p~fipR~~ 213 (419)
T 3rfr_A 176 LENYGI--SRIYAW-----HLPWLA--VGAAWILFWFIR-KGIIASYV 213 (419)
T ss_dssp TTTTTH--HHHHHH-----HHHHHH--HHHHHHHHHHHS-SCSHHHHH
T ss_pred chhccc--CceEee-----hhHHHH--HHHHHHHHHHhc-cccchhhH
Confidence 677776 677774 555554 489999998854 44444443
No 42
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=23.02 E-value=1.1e+02 Score=22.43 Aligned_cols=30 Identities=20% Similarity=0.363 Sum_probs=22.1
Q ss_pred ccChHHHHhhhCCCCCCCcHHHHHHHHHHHhhHHH
Q 027313 83 EKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHY 117 (225)
Q Consensus 83 ~k~W~eVA~~LGlp~~~t~as~~LK~~Y~kyLlpY 117 (225)
.+.|..||..++-- ...+++.+|..++...
T Consensus 31 ~~rW~~IA~~vpGR-----T~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 31 PDRWANVARAVEGR-----TPEEVKKHYEILVEDI 60 (93)
T ss_dssp TTHHHHHHHHSTTC-----CHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHcCCC-----CHHHHHHHHHHHHHHH
Confidence 35899999999521 2248999999877554
No 43
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=22.93 E-value=89 Score=20.95 Aligned_cols=46 Identities=13% Similarity=0.230 Sum_probs=30.6
Q ss_pred hhHHHHHhcCcc-hhhccccChHHHHhhhCCCCCCCcHHHHHHHHHHHhhH
Q 027313 66 VLYVEATTRGGY-EKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (225)
Q Consensus 66 ~LY~~V~~~GGy-~~Vt~~k~W~eVA~~LGlp~~~t~as~~LK~~Y~kyLl 115 (225)
.|+.-|.+.... ..|+.++.|.++++.. +|.. .-.+.|..|.|+|.
T Consensus 12 ~L~~~v~~~~~~~~~~~Gn~iwk~la~~~-~~~H---twqSwRdRy~k~l~ 58 (59)
T 1fex_A 12 AILTYVKENARSPSSVTGNALWKAMEKSS-LTQH---SWQSLKDRYLKHLR 58 (59)
T ss_dssp HHHHHHHHTCCSTTTTTSSHHHHHHHHSC-SSSC---CSHHHHHHHHHHTC
T ss_pred HHHHHHHHhccccCCCccHHHHHHHHHhH-CCCC---CHHHHHHHHHHHcc
Confidence 466667665311 3688889999999821 3332 23589999999873
Done!