BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027314
(225 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9R0A8|HAUS1_RAT HAUS augmin-like complex subunit 1 OS=Rattus norvegicus GN=Haus1
PE=2 SV=2
Length = 278
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 24 VKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQ 83
V WL F +P +E +R+ LY+L+ ++ + + N+V D RQKA+EY S+
Sbjct: 11 VAEWLKKIF--GDHPIPQYEMNARTTEILYHLSERNRVRDRDVNLVIEDLRQKASEYESE 68
Query: 84 AARIREIL-ENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDIS 137
A R+ + L E+V + +L + L + A L I+DT L+SF+ A+ D++
Sbjct: 69 AKRLEDFLMESVNFSPANLSNTGSRFLNALVDSAIALEIKDTSLASFIPAVNDLT 123
>sp|Q8BHX1|HAUS1_MOUSE HAUS augmin-like complex subunit 1 OS=Mus musculus GN=Haus1 PE=2
SV=2
Length = 278
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 11/119 (9%)
Query: 24 VKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQ 83
V WL F +P +E SR+ LY+L+ ++ + + ++V D +QKA+EY S+
Sbjct: 11 VAEWLKKVF--GDHPIPQYEMNSRTTEILYHLSERNRVRDRDISLVIEDLKQKASEYESE 68
Query: 84 AARIREIL-ENVGLAQESLPSNVVSSA----QVLANVANLLNIRDTELSSFLVAMGDIS 137
A R+ + L E+V + P+N+ S L + A L I+DT L+SF+ A+ D++
Sbjct: 69 AKRLEDFLMESVNFS----PANLSKSGSRFLNALVDSAIALEIKDTSLASFIPAVNDLT 123
>sp|Q2TBK4|HAUS1_BOVIN HAUS augmin-like complex subunit 1 OS=Bos taurus GN=HAUS1 PE=2 SV=1
Length = 278
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 22 ADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYR 81
A V AWL F +P +E + + LYNL+ ++ + + +V D +QKA EY
Sbjct: 9 AQVAAWLKKIF--GDHPIPQYEVNAWTTEILYNLSERNRIRDRDVYLVTEDLKQKAKEYE 66
Query: 82 SQAARIREIL-ENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDIS 137
S+A ++++L E+V + SL S L + A +L +DT L+SF+ A+ D++
Sbjct: 67 SEAKHLQDLLMESVNFSPASLSSTGSRYLNALVDSAVVLETKDTSLASFIPAVNDLT 123
>sp|Q96CS2|HAUS1_HUMAN HAUS augmin-like complex subunit 1 OS=Homo sapiens GN=HAUS1 PE=1
SV=1
Length = 278
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 101/203 (49%), Gaps = 21/203 (10%)
Query: 12 PTESRDAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAA 71
P E R+ V AWL F +P +E R+ L++L+ ++ + + +V
Sbjct: 3 PQEERETQ----VAAWLKKIF--GDHPIPQYEVNPRTTEILHHLSERNRVRDRDVYLVIE 56
Query: 72 DFRQKAAEYRSQAARIREIL-ENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFL 130
D +QKA+EY S+A ++++L E+V + +L S L + A L +DT L+SF+
Sbjct: 57 DLKQKASEYESEAKYLQDLLMESVNFSPANLSSTGSRYLNALVDSAVALETKDTSLASFI 116
Query: 131 VAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCE---- 186
A+ D++ + + ++K + E KI L+ K + L++ L++DV E
Sbjct: 117 PAVNDLT---SDLFRTKSKSE-EIKIELEKLEKNLTATLVLEKC---LQEDVKKAELHLS 169
Query: 187 ---AQMENWKTNLAVMASKERQY 206
A+++N + N+ + +K ++
Sbjct: 170 TERAKVDNRRQNMDFLKAKSEEF 192
>sp|Q2JLV2|AROA_SYNJB 3-phosphoshikimate 1-carboxyvinyltransferase OS=Synechococcus sp.
(strain JA-2-3B'a(2-13)) GN=aroA PE=3 SV=2
Length = 444
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 47 RSVAH-LYNLATLSQAKTKAANIV-AADFRQKAAEYRSQAARIREI------LENVGLAQ 98
+S++H L +L++ +T ++ D R AA +R+ A I E+ + VGL Q
Sbjct: 29 KSISHRALMLGSLAEGETTIQGLLLGEDPRSTAACFRALGADISELNSECVRIRGVGLGQ 88
Query: 99 ESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLR 139
P++V+ + + +L I + F GD SLR
Sbjct: 89 LQEPADVLDAGNSGTTLRLMLGILAGQAGRFFAVTGDRSLR 129
>sp|P11657|PAC_STRMG Major cell-surface adhesin PAc OS=Streptococcus mutans GN=pac PE=1
SV=1
Length = 1565
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 135 DISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQM 189
D + K V+ VQKE++I DYT++A +K+T Q + DVA EA++
Sbjct: 113 DADVNKGTVKTPEEAVQKETEIKEDYTKQAED----IKKTTDQYKSDVAAHEAEV 163
>sp|P23504|SPAP_STRMU Cell surface antigen I/II OS=Streptococcus mutans serotype c
(strain ATCC 700610 / UA159) GN=spaP PE=1 SV=2
Length = 1562
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 135 DISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQM 189
D + K V+ VQKE++I DYT++A +K+T Q + DVA EA++
Sbjct: 114 DADVNKGTVKTAEEAVQKETEIKEDYTKQAED----IKKTTDQYKSDVAAHEAEV 164
>sp|A7MEV9|MUKB_CROS8 Chromosome partition protein MukB OS=Cronobacter sakazakii (strain
ATCC BAA-894) GN=mukB PE=3 SV=1
Length = 1482
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 110 QVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLT 169
QVLA++ + + + L + DI +R A E+RA+ +++ + RL+
Sbjct: 1019 QVLASLKSSFDTKKELLGDLQRELQDIGVRADAGAEERARQRRD---------ELHTRLS 1069
Query: 170 YLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQY 206
+ QLE + CEA+M+N +L + ER Y
Sbjct: 1070 NNRSRRNQLEKQLTLCEAEMDNLTRSLKRL---ERNY 1103
>sp|A1SHI7|ATPF_NOCSJ ATP synthase subunit b OS=Nocardioides sp. (strain BAA-499 /
JS614) GN=atpF PE=3 SV=1
Length = 189
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 40 PAFE--YTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQAARIRE 89
P FE YT R+ A LA ++ K A+ AD Q+ +E R +AARIRE
Sbjct: 45 PRFEQIYTERTQAIEGGLAA-AETKQAEADAKLADLEQQLSEARHEAARIRE 95
>sp|Q5U3V9|SNF8_DANRE Vacuolar-sorting protein SNF8 OS=Danio rerio GN=snf8 PE=2 SV=2
Length = 258
Score = 30.8 bits (68), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 162 RKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSI 217
+K +A Y +R ED +A Q++ +KT+L ASK +Q +++ + ++V
Sbjct: 13 KKKLAEAKYKERGSVLAEDQIAQMSKQLDTFKTHLEEFASKHKQEIRKSSQFRVQF 68
>sp|Q9CZ28|SNF8_MOUSE Vacuolar-sorting protein SNF8 OS=Mus musculus GN=Snf8 PE=2 SV=1
Length = 258
Score = 30.8 bits (68), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 162 RKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSI 217
+K +A Y +R ED +A Q++ +KTNL ASK +Q +++ ++V
Sbjct: 13 KKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNPEFRVQF 68
>sp|Q96H20|SNF8_HUMAN Vacuolar-sorting protein SNF8 OS=Homo sapiens GN=SNF8 PE=1 SV=1
Length = 258
Score = 30.8 bits (68), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 162 RKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSI 217
+K +A Y +R ED +A Q++ +KTNL ASK +Q +++ ++V
Sbjct: 13 KKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNPEFRVQF 68
>sp|Q5RK19|SNF8_RAT Vacuolar-sorting protein SNF8 OS=Rattus norvegicus GN=Snf8 PE=1
SV=1
Length = 258
Score = 30.4 bits (67), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 162 RKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSI 217
+K +A Y +R ED +A Q++ +KTNL ASK +Q +++ ++V
Sbjct: 13 KKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNPEFRVQF 68
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.126 0.340
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,704,374
Number of Sequences: 539616
Number of extensions: 2140673
Number of successful extensions: 9575
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 121
Number of HSP's that attempted gapping in prelim test: 9474
Number of HSP's gapped (non-prelim): 171
length of query: 225
length of database: 191,569,459
effective HSP length: 113
effective length of query: 112
effective length of database: 130,592,851
effective search space: 14626399312
effective search space used: 14626399312
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)