Query 027314
Match_columns 225
No_of_seqs 82 out of 84
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 08:05:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027314.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027314hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11559 ADIP: Afadin- and alp 94.3 2.5 5.3E-05 34.6 14.4 121 84-217 4-124 (151)
2 PF15619 Lebercilin: Ciliary p 91.9 3.6 7.8E-05 35.9 11.7 84 128-218 9-92 (194)
3 PRK09039 hypothetical protein; 91.2 3.3 7.1E-05 38.8 11.4 72 128-206 113-184 (343)
4 PRK11637 AmiB activator; Provi 90.7 4.6 9.9E-05 38.4 12.1 83 135-217 44-126 (428)
5 PF14389 Lzipper-MIP1: Leucine 90.4 4.2 9E-05 31.2 9.5 77 143-219 6-86 (88)
6 PF05278 PEARLI-4: Arabidopsis 89.6 13 0.00029 34.3 13.6 160 63-222 75-263 (269)
7 PF04518 Effector_1: Effector 87.6 16 0.00034 35.3 13.2 133 88-222 141-277 (379)
8 KOG2391 Vacuolar sorting prote 86.9 2 4.3E-05 41.0 6.6 70 143-212 216-285 (365)
9 PF07889 DUF1664: Protein of u 86.4 13 0.00028 30.7 10.3 80 128-221 40-123 (126)
10 PF11932 DUF3450: Protein of u 86.1 14 0.0003 32.7 11.3 51 171-221 89-144 (251)
11 PRK10884 SH3 domain-containing 84.7 8 0.00017 34.1 9.0 72 133-214 95-166 (206)
12 PF00038 Filament: Intermediat 84.1 16 0.00035 32.8 10.9 35 145-179 216-250 (312)
13 KOG0964 Structural maintenance 84.0 24 0.00053 38.2 13.4 84 128-211 844-933 (1200)
14 COG1196 Smc Chromosome segrega 83.6 66 0.0014 34.8 16.9 90 125-214 822-918 (1163)
15 PF08317 Spc7: Spc7 kinetochor 82.8 40 0.00086 31.2 13.3 48 171-218 221-268 (325)
16 COG1196 Smc Chromosome segrega 82.7 55 0.0012 35.4 15.9 92 129-220 847-938 (1163)
17 PRK09039 hypothetical protein; 82.5 43 0.00094 31.4 16.2 61 131-198 123-183 (343)
18 PF05008 V-SNARE: Vesicle tran 81.6 11 0.00024 27.2 7.4 43 170-218 36-78 (79)
19 PF04156 IncA: IncA protein; 80.3 30 0.00066 28.9 10.6 71 137-207 80-150 (191)
20 KOG0250 DNA repair protein RAD 80.3 95 0.0021 33.9 17.2 94 121-221 334-428 (1074)
21 COG4942 Membrane-bound metallo 80.1 15 0.00032 36.0 9.6 82 135-219 42-126 (420)
22 PF00261 Tropomyosin: Tropomyo 80.0 28 0.0006 30.7 10.7 84 131-214 99-182 (237)
23 TIGR02169 SMC_prok_A chromosom 79.6 83 0.0018 32.8 18.1 8 208-215 490-497 (1164)
24 PRK04863 mukB cell division pr 78.6 1.2E+02 0.0026 34.2 17.1 167 15-224 806-972 (1486)
25 PF10168 Nup88: Nuclear pore c 77.8 31 0.00068 35.7 11.7 83 135-220 583-665 (717)
26 KOG0250 DNA repair protein RAD 77.6 85 0.0018 34.3 14.9 75 133-214 389-463 (1074)
27 PF10234 Cluap1: Clusterin-ass 76.1 65 0.0014 29.7 18.7 88 122-212 156-247 (267)
28 COG3883 Uncharacterized protei 75.2 69 0.0015 29.6 12.0 48 132-179 39-86 (265)
29 KOG0980 Actin-binding protein 74.7 94 0.002 33.5 14.1 27 99-125 434-460 (980)
30 TIGR03185 DNA_S_dndD DNA sulfu 74.4 1E+02 0.0022 31.1 14.8 77 138-214 391-469 (650)
31 COG4942 Membrane-bound metallo 74.1 94 0.002 30.6 13.4 75 140-214 33-107 (420)
32 PF07106 TBPIP: Tat binding pr 73.5 52 0.0011 27.3 10.1 68 87-157 19-105 (169)
33 PF04912 Dynamitin: Dynamitin 72.8 79 0.0017 29.9 12.3 92 125-217 240-345 (388)
34 COG4026 Uncharacterized protei 72.3 24 0.00053 32.4 8.2 55 131-185 128-182 (290)
35 COG5185 HEC1 Protein involved 72.2 33 0.00071 34.6 9.7 52 171-222 307-358 (622)
36 PF10186 Atg14: UV radiation r 72.1 67 0.0015 28.0 11.2 44 136-179 61-104 (302)
37 PF00261 Tropomyosin: Tropomyo 71.8 63 0.0014 28.4 10.7 49 171-219 132-180 (237)
38 PRK11637 AmiB activator; Provi 71.8 94 0.002 29.6 17.3 55 154-211 182-236 (428)
39 PF04849 HAP1_N: HAP1 N-termin 71.6 26 0.00056 33.0 8.5 79 133-218 215-293 (306)
40 KOG0976 Rho/Rac1-interacting s 71.0 1.6E+02 0.0035 31.9 16.1 37 47-83 242-278 (1265)
41 PF15456 Uds1: Up-regulated Du 70.7 45 0.00097 27.2 8.8 31 188-218 82-112 (124)
42 PF10473 CENP-F_leu_zip: Leuci 70.2 64 0.0014 27.0 11.3 90 128-217 21-110 (140)
43 PF07889 DUF1664: Protein of u 69.7 62 0.0013 26.7 10.1 29 154-185 80-108 (126)
44 PF10168 Nup88: Nuclear pore c 69.4 1.5E+02 0.0032 30.9 19.5 33 186-218 684-716 (717)
45 PF10234 Cluap1: Clusterin-ass 68.4 51 0.0011 30.4 9.6 85 125-209 177-261 (267)
46 KOG0995 Centromere-associated 68.0 1.5E+02 0.0032 30.4 14.3 113 99-221 269-384 (581)
47 TIGR03007 pepcterm_ChnLen poly 67.7 1.2E+02 0.0026 29.1 14.6 13 69-81 162-174 (498)
48 PRK04863 mukB cell division pr 67.2 2.3E+02 0.0049 32.2 18.1 43 172-214 382-424 (1486)
49 PF14662 CCDC155: Coiled-coil 66.0 97 0.0021 27.5 11.2 84 136-219 86-169 (193)
50 PF10212 TTKRSYEDQ: Predicted 65.8 98 0.0021 31.3 11.6 87 128-214 417-514 (518)
51 smart00435 TOPEUc DNA Topoisom 65.2 1.2E+02 0.0027 29.5 11.9 72 86-157 232-303 (391)
52 PF02403 Seryl_tRNA_N: Seryl-t 65.0 60 0.0013 24.8 10.2 68 140-218 31-98 (108)
53 COG3883 Uncharacterized protei 64.9 83 0.0018 29.1 10.3 27 188-214 74-100 (265)
54 PF04799 Fzo_mitofusin: fzo-li 64.7 62 0.0013 28.1 8.9 57 145-215 109-165 (171)
55 PF04582 Reo_sigmaC: Reovirus 64.4 6 0.00013 37.4 2.9 59 58-116 4-62 (326)
56 PF14643 DUF4455: Domain of un 64.4 1.5E+02 0.0032 29.0 16.0 174 50-223 264-462 (473)
57 PF12718 Tropomyosin_1: Tropom 63.0 87 0.0019 25.9 11.3 28 188-215 109-136 (143)
58 PRK10884 SH3 domain-containing 62.6 91 0.002 27.5 9.8 19 172-190 145-163 (206)
59 PF05546 She9_MDM33: She9 / Md 62.5 1.2E+02 0.0025 27.2 12.2 58 130-187 31-93 (207)
60 PRK03918 chromosome segregatio 62.4 1.1E+02 0.0024 31.4 11.7 14 20-33 109-122 (880)
61 PF12761 End3: Actin cytoskele 62.1 69 0.0015 28.4 8.9 17 151-167 134-150 (195)
62 cd07643 I-BAR_IMD_MIM Inverse 61.9 92 0.002 28.3 9.8 43 104-146 44-86 (231)
63 PF03961 DUF342: Protein of un 61.6 73 0.0016 30.6 9.8 38 183-220 371-408 (451)
64 PF04156 IncA: IncA protein; 60.7 98 0.0021 25.8 11.5 28 130-157 87-114 (191)
65 PF14257 DUF4349: Domain of un 60.4 27 0.00059 30.9 6.2 26 123-148 124-149 (262)
66 KOG0995 Centromere-associated 59.6 66 0.0014 32.8 9.2 59 161-222 264-322 (581)
67 KOG1655 Protein involved in va 59.5 1E+02 0.0022 27.7 9.5 72 125-215 13-84 (218)
68 KOG0161 Myosin class II heavy 59.3 3.5E+02 0.0076 31.7 16.6 37 46-82 1142-1178(1930)
69 COG1842 PspA Phage shock prote 59.3 1.3E+02 0.0029 26.8 11.6 82 135-216 49-142 (225)
70 PHA02562 46 endonuclease subun 59.2 1.7E+02 0.0038 28.2 15.4 14 20-33 111-124 (562)
71 PF00846 Hanta_nucleocap: Hant 57.9 86 0.0019 30.8 9.4 64 147-213 4-68 (428)
72 PF12795 MscS_porin: Mechanose 57.7 1.3E+02 0.0029 26.3 11.9 90 123-212 77-175 (240)
73 PF04949 Transcrip_act: Transc 57.4 1.3E+02 0.0027 26.0 10.8 85 131-215 31-123 (159)
74 COG2433 Uncharacterized conser 57.2 1.3E+02 0.0029 31.1 11.0 86 127-219 418-506 (652)
75 PF07798 DUF1640: Protein of u 56.8 1.2E+02 0.0026 25.6 9.2 30 139-168 74-103 (177)
76 PF10174 Cast: RIM-binding pro 56.6 2.7E+02 0.0058 29.5 15.1 57 156-212 228-298 (775)
77 PF13805 Pil1: Eisosome compon 56.6 1.1E+02 0.0024 28.3 9.6 138 46-195 53-194 (271)
78 PF02994 Transposase_22: L1 tr 55.6 16 0.00035 34.6 4.2 54 172-225 143-198 (370)
79 PF15070 GOLGA2L5: Putative go 55.4 1.5E+02 0.0033 30.4 11.2 47 135-181 19-65 (617)
80 PF08397 IMD: IRSp53/MIM homol 55.3 1.4E+02 0.003 25.9 14.5 70 69-147 4-74 (219)
81 PF12128 DUF3584: Protein of u 55.1 3.2E+02 0.0069 29.9 14.5 35 183-217 355-389 (1201)
82 PF11855 DUF3375: Protein of u 54.9 30 0.00064 33.9 6.0 39 20-59 68-113 (478)
83 PRK15422 septal ring assembly 54.5 98 0.0021 23.8 8.0 62 157-218 9-70 (79)
84 PRK04778 septation ring format 54.5 2.3E+02 0.0051 28.2 16.7 26 199-224 416-441 (569)
85 PRK10803 tol-pal system protei 54.0 55 0.0012 29.5 7.1 45 169-213 57-101 (263)
86 KOG0946 ER-Golgi vesicle-tethe 54.0 1.2E+02 0.0026 32.5 10.3 89 127-215 660-748 (970)
87 PF05278 PEARLI-4: Arabidopsis 53.9 76 0.0016 29.4 8.0 58 151-208 206-263 (269)
88 TIGR02680 conserved hypothetic 53.8 3.6E+02 0.0077 30.1 17.2 87 133-219 278-372 (1353)
89 PRK11281 hypothetical protein; 53.8 3.4E+02 0.0074 29.9 18.2 88 123-210 120-215 (1113)
90 PF13094 CENP-Q: CENP-Q, a CEN 53.7 1.1E+02 0.0025 25.1 8.5 27 153-179 42-68 (160)
91 KOG0993 Rab5 GTPase effector R 53.6 1.2E+02 0.0026 30.3 9.6 93 127-220 95-188 (542)
92 COG0177 Nth Predicted EndoIII- 53.0 54 0.0012 29.2 6.8 57 18-78 3-59 (211)
93 PF07888 CALCOCO1: Calcium bin 53.0 1.5E+02 0.0032 30.2 10.5 9 132-140 172-180 (546)
94 KOG0971 Microtubule-associated 53.0 3.5E+02 0.0076 29.8 16.0 39 172-210 402-440 (1243)
95 cd00179 SynN Syntaxin N-termin 52.4 1.2E+02 0.0025 24.1 9.5 11 171-181 60-70 (151)
96 PF06160 EzrA: Septation ring 52.2 2.6E+02 0.0056 28.0 16.5 54 172-225 385-438 (560)
97 PF04102 SlyX: SlyX; InterPro 52.1 89 0.0019 22.6 7.2 11 195-205 40-50 (69)
98 smart00787 Spc7 Spc7 kinetocho 51.9 2.1E+02 0.0045 26.8 10.8 36 183-218 228-263 (312)
99 COG1229 FwdA Formylmethanofura 51.7 26 0.00056 34.9 4.9 44 16-61 162-227 (575)
100 KOG0963 Transcription factor/C 50.5 3.1E+02 0.0067 28.5 14.0 180 35-216 99-304 (629)
101 smart00787 Spc7 Spc7 kinetocho 50.2 2.2E+02 0.0048 26.6 11.0 7 38-44 61-67 (312)
102 TIGR01005 eps_transp_fam exopo 50.0 1.2E+02 0.0026 30.8 9.6 13 132-144 289-301 (754)
103 PF14915 CCDC144C: CCDC144C pr 49.8 2.3E+02 0.0051 26.8 11.3 89 133-221 181-298 (305)
104 PF11559 ADIP: Afadin- and alp 49.4 1.4E+02 0.0031 24.2 12.6 11 21-31 4-14 (151)
105 cd07595 BAR_RhoGAP_Rich-like T 49.0 2E+02 0.0044 25.8 11.4 49 170-221 162-210 (244)
106 PF04111 APG6: Autophagy prote 48.9 1.9E+02 0.0042 26.8 10.0 26 69-94 10-35 (314)
107 cd07624 BAR_SNX7_30 The Bin/Am 48.5 1.7E+02 0.0038 25.0 14.6 71 140-216 111-182 (200)
108 PF04012 PspA_IM30: PspA/IM30 47.7 1.8E+02 0.0039 24.9 12.1 48 171-218 96-143 (221)
109 cd07623 BAR_SNX1_2 The Bin/Amp 47.4 1.9E+02 0.0042 25.2 16.4 49 171-221 135-187 (224)
110 cd02681 MIT_calpain7_1 MIT: do 47.2 27 0.00057 26.2 3.4 23 196-218 50-72 (76)
111 PF09304 Cortex-I_coil: Cortex 46.8 1.6E+02 0.0034 23.9 7.8 28 183-210 47-74 (107)
112 KOG4603 TBP-1 interacting prot 46.8 1.2E+02 0.0027 26.8 7.8 88 122-214 77-169 (201)
113 PF07106 TBPIP: Tat binding pr 46.6 59 0.0013 27.0 5.7 11 23-33 5-15 (169)
114 KOG0977 Nuclear envelope prote 46.5 3.4E+02 0.0073 27.7 11.9 84 131-214 99-182 (546)
115 cd07625 BAR_Vps17p The Bin/Amp 46.2 2.2E+02 0.0048 25.5 19.7 100 107-210 76-180 (230)
116 PF10226 DUF2216: Uncharacteri 46.1 2.2E+02 0.0047 25.4 11.1 30 187-216 90-123 (195)
117 PF06632 XRCC4: DNA double-str 45.9 2.7E+02 0.0059 26.5 12.7 16 200-215 193-208 (342)
118 COG1579 Zn-ribbon protein, pos 45.6 2.4E+02 0.0052 25.7 10.2 85 126-217 40-126 (239)
119 KOG0994 Extracellular matrix g 45.3 5.1E+02 0.011 29.5 17.7 71 145-215 1654-1731(1758)
120 KOG0976 Rho/Rac1-interacting s 45.2 2.1E+02 0.0045 31.1 10.3 81 128-211 103-190 (1265)
121 PRK05431 seryl-tRNA synthetase 44.9 2.3E+02 0.0049 27.4 10.1 21 196-216 75-95 (425)
122 PF10392 COG5: Golgi transport 44.7 1.6E+02 0.0036 23.6 13.6 104 105-221 10-113 (132)
123 PF04102 SlyX: SlyX; InterPro 44.5 53 0.0011 23.9 4.5 47 137-183 3-49 (69)
124 TIGR01005 eps_transp_fam exopo 44.4 3.6E+02 0.0079 27.5 13.4 7 27-33 141-147 (754)
125 COG1340 Uncharacterized archae 44.4 2.8E+02 0.006 26.1 12.3 103 118-221 122-227 (294)
126 cd02684 MIT_2 MIT: domain cont 44.3 34 0.00074 25.2 3.6 26 196-221 49-74 (75)
127 TIGR00606 rad50 rad50. This fa 44.2 4.4E+02 0.0095 29.1 13.2 27 131-157 888-914 (1311)
128 PLN02678 seryl-tRNA synthetase 44.1 2.3E+02 0.005 27.9 10.1 26 187-212 78-103 (448)
129 PF07888 CALCOCO1: Calcium bin 44.1 2.6E+02 0.0057 28.5 10.7 14 199-212 218-231 (546)
130 PF08537 NBP1: Fungal Nap bind 44.1 2.9E+02 0.0064 26.3 11.0 90 71-181 136-225 (323)
131 PF08614 ATG16: Autophagy prot 43.3 1.4E+02 0.003 25.4 7.7 9 132-140 96-104 (194)
132 PF04871 Uso1_p115_C: Uso1 / p 43.2 1.9E+02 0.004 23.8 10.4 24 190-213 87-110 (136)
133 TIGR03752 conj_TIGR03752 integ 43.2 1.4E+02 0.003 29.9 8.4 43 117-159 48-94 (472)
134 PF10157 DUF2365: Uncharacteri 42.9 2.1E+02 0.0045 24.2 9.5 81 64-145 4-94 (149)
135 PF09403 FadA: Adhesion protei 42.9 1.9E+02 0.0041 23.8 11.8 52 126-177 22-73 (126)
136 PF05478 Prominin: Prominin; 42.7 1.7E+02 0.0037 30.5 9.5 92 99-190 585-691 (806)
137 PF11279 DUF3080: Protein of u 42.5 2.8E+02 0.0062 25.7 12.7 169 36-222 69-257 (316)
138 PF06320 GCN5L1: GCN5-like pro 42.4 1.1E+02 0.0023 24.8 6.5 34 182-216 63-96 (121)
139 TIGR00996 Mtu_fam_mce virulenc 41.9 2.5E+02 0.0054 24.9 13.2 7 36-42 118-124 (291)
140 PRK04325 hypothetical protein; 41.8 1.4E+02 0.0031 22.1 6.7 12 136-147 7-18 (74)
141 TIGR00606 rad50 rad50. This fa 41.5 5.3E+02 0.011 28.5 18.3 92 126-217 986-1091(1311)
142 TIGR01010 BexC_CtrB_KpsE polys 41.3 2.1E+02 0.0045 26.4 9.0 14 138-151 177-190 (362)
143 PF10224 DUF2205: Predicted co 41.2 89 0.0019 23.9 5.5 35 131-165 30-64 (80)
144 KOG0161 Myosin class II heavy 40.7 6.8E+02 0.015 29.6 17.5 110 61-177 1653-1762(1930)
145 KOG0994 Extracellular matrix g 40.3 3.6E+02 0.0077 30.6 11.4 54 128-181 1236-1296(1758)
146 TIGR02231 conserved hypothetic 40.0 2.8E+02 0.0061 27.1 10.1 24 189-212 126-149 (525)
147 TIGR02132 phaR_Bmeg polyhydrox 39.5 1.1E+02 0.0023 27.1 6.4 15 106-120 71-85 (189)
148 PF06103 DUF948: Bacterial pro 39.3 1.6E+02 0.0034 21.8 9.2 40 129-168 17-56 (90)
149 PF04212 MIT: MIT (microtubule 38.9 50 0.0011 23.3 3.6 19 199-217 51-69 (69)
150 PF13851 GAS: Growth-arrest sp 38.9 1.3E+02 0.0029 26.1 7.0 55 168-222 57-118 (201)
151 TIGR02894 DNA_bind_RsfA transc 38.6 2.6E+02 0.0056 24.2 11.1 37 183-219 114-150 (161)
152 PF05791 Bacillus_HBL: Bacillu 38.6 2.3E+02 0.005 24.1 8.3 91 106-218 90-180 (184)
153 PF05266 DUF724: Protein of un 38.5 2.7E+02 0.0058 24.2 11.1 43 172-214 137-179 (190)
154 PRK03918 chromosome segregatio 38.3 4.6E+02 0.0099 26.9 17.1 34 172-205 244-277 (880)
155 PF00957 Synaptobrevin: Synapt 37.8 1.6E+02 0.0036 21.6 6.7 54 148-208 6-59 (89)
156 TIGR02231 conserved hypothetic 37.8 2E+02 0.0044 28.0 8.8 25 194-218 145-169 (525)
157 PF14584 DUF4446: Protein of u 37.7 2.5E+02 0.0053 23.6 8.2 57 169-225 26-85 (151)
158 cd07645 I-BAR_IMD_BAIAP2L1 Inv 37.6 3.2E+02 0.0069 24.9 12.4 119 99-221 37-173 (226)
159 PHA02562 46 endonuclease subun 37.5 3.8E+02 0.0083 25.8 14.6 6 136-141 311-316 (562)
160 KOG4438 Centromere-associated 37.5 4.2E+02 0.0092 26.4 10.7 79 104-182 213-299 (446)
161 TIGR00414 serS seryl-tRNA synt 37.3 3.5E+02 0.0077 26.0 10.2 21 196-216 78-98 (418)
162 PF09755 DUF2046: Uncharacteri 37.2 2.8E+02 0.0061 26.3 9.1 22 128-149 110-131 (310)
163 PF12210 Hrs_helical: Hepatocy 37.1 1.4E+02 0.003 23.8 6.1 54 122-179 30-83 (96)
164 KOG1003 Actin filament-coating 37.1 2.5E+02 0.0054 25.2 8.3 69 142-217 1-69 (205)
165 cd02682 MIT_AAA_Arch MIT: doma 36.9 44 0.00095 25.2 3.1 22 196-217 49-70 (75)
166 cd02656 MIT MIT: domain contai 36.7 53 0.0011 23.5 3.5 23 196-218 49-71 (75)
167 cd02683 MIT_1 MIT: domain cont 36.4 64 0.0014 23.9 4.0 25 196-220 49-73 (77)
168 cd02678 MIT_VPS4 MIT: domain c 36.3 50 0.0011 24.0 3.3 23 196-218 49-71 (75)
169 TIGR00634 recN DNA repair prot 36.1 4.4E+02 0.0096 26.1 13.2 20 125-144 323-342 (563)
170 COG2959 HemX Uncharacterized e 36.0 4.3E+02 0.0093 25.9 11.7 29 95-123 20-48 (391)
171 PF11180 DUF2968: Protein of u 35.5 3.2E+02 0.0069 24.3 11.7 87 125-215 85-175 (192)
172 PRK09841 cryptic autophosphory 35.3 4.1E+02 0.0089 27.3 10.8 10 106-115 243-252 (726)
173 COG0497 RecN ATPase involved i 35.1 5.1E+02 0.011 26.5 14.5 81 87-168 285-365 (557)
174 KOG4010 Coiled-coil protein TP 35.0 1.7E+02 0.0037 26.2 6.9 54 122-175 27-81 (208)
175 PRK13729 conjugal transfer pil 34.5 78 0.0017 31.6 5.3 14 144-157 75-88 (475)
176 PF08614 ATG16: Autophagy prot 34.0 81 0.0018 26.9 4.8 8 172-179 122-129 (194)
177 PF05384 DegS: Sensor protein 33.8 3E+02 0.0065 23.4 10.3 87 131-217 27-114 (159)
178 PF05791 Bacillus_HBL: Bacillu 33.6 3E+02 0.0065 23.4 11.5 10 127-136 90-99 (184)
179 PF05266 DUF724: Protein of un 33.5 3.2E+02 0.007 23.7 12.3 43 176-218 127-169 (190)
180 PRK13922 rod shape-determining 33.4 2.2E+02 0.0047 25.3 7.6 29 129-157 60-88 (276)
181 COG4423 Uncharacterized protei 33.3 1.8E+02 0.0039 22.4 6.0 23 117-139 1-23 (81)
182 PF13514 AAA_27: AAA domain 33.1 6.6E+02 0.014 27.2 19.2 27 87-113 710-736 (1111)
183 PF15456 Uds1: Up-regulated Du 33.0 2.7E+02 0.0059 22.7 9.1 37 174-210 75-111 (124)
184 PF10018 Med4: Vitamin-D-recep 32.8 1.4E+02 0.0031 25.4 6.1 11 211-221 87-97 (188)
185 PF07195 FliD_C: Flagellar hoo 32.7 3.4E+02 0.0073 23.7 8.8 50 127-179 189-238 (239)
186 PF12128 DUF3584: Protein of u 32.6 6.2E+02 0.013 27.8 12.1 24 45-68 464-487 (1201)
187 PRK04778 septation ring format 32.5 5.2E+02 0.011 25.8 17.5 63 117-179 369-431 (569)
188 cd07605 I-BAR_IMD Inverse (I)- 32.4 3.7E+02 0.0079 24.0 11.8 35 101-137 39-74 (223)
189 PF00038 Filament: Intermediat 32.3 3.7E+02 0.0079 24.0 13.2 9 23-31 33-41 (312)
190 KOG4083 Head-elevated expressi 32.2 1.2E+02 0.0026 26.9 5.5 28 196-223 118-145 (192)
191 PF06005 DUF904: Protein of un 32.1 2.1E+02 0.0046 21.2 7.7 23 157-179 9-31 (72)
192 TIGR02680 conserved hypothetic 31.7 7.8E+02 0.017 27.6 18.4 65 144-211 902-966 (1353)
193 cd07620 BAR_SH3BP1 The Bin/Amp 31.5 4.2E+02 0.0091 24.5 9.8 31 191-221 193-223 (257)
194 PF08702 Fib_alpha: Fibrinogen 31.4 3.1E+02 0.0066 22.8 12.8 89 127-217 32-127 (146)
195 KOG0964 Structural maintenance 31.4 6.4E+02 0.014 28.0 11.5 89 131-219 397-492 (1200)
196 PF12325 TMF_TATA_bd: TATA ele 31.0 2.9E+02 0.0063 22.4 11.3 87 127-217 19-112 (120)
197 PF07195 FliD_C: Flagellar hoo 30.8 1.1E+02 0.0023 26.9 5.1 31 187-220 207-237 (239)
198 PF10264 Stork_head: Winged he 30.8 39 0.00084 25.9 2.0 32 21-54 32-63 (80)
199 KOG4674 Uncharacterized conser 30.6 9.5E+02 0.021 28.3 16.7 90 126-218 631-720 (1822)
200 PF08172 CASP_C: CASP C termin 30.6 2.8E+02 0.0061 25.1 7.8 39 143-181 84-122 (248)
201 PF11420 Subtilosin_A: Bacteri 30.4 23 0.0005 22.9 0.6 11 36-46 16-26 (35)
202 PF04111 APG6: Autophagy prote 30.2 4.5E+02 0.0098 24.4 10.9 21 129-149 48-68 (314)
203 PRK14154 heat shock protein Gr 29.9 3.7E+02 0.0081 23.9 8.3 50 119-168 47-96 (208)
204 TIGR00634 recN DNA repair prot 29.8 5.6E+02 0.012 25.4 16.0 28 108-135 249-277 (563)
205 PRK14127 cell division protein 29.7 2.5E+02 0.0053 22.6 6.6 19 193-219 85-103 (109)
206 PF10174 Cast: RIM-binding pro 29.7 7.1E+02 0.015 26.5 11.8 70 112-181 289-372 (775)
207 PF05529 Bap31: B-cell recepto 29.6 2.6E+02 0.0057 23.5 7.2 26 130-155 117-142 (192)
208 cd04776 HTH_GnyR Helix-Turn-He 29.6 95 0.002 24.5 4.2 23 188-210 95-117 (118)
209 PRK05771 V-type ATP synthase s 29.5 4.2E+02 0.009 26.8 9.6 41 126-166 210-250 (646)
210 PRK02224 chromosome segregatio 29.2 6.6E+02 0.014 26.0 18.1 52 127-178 345-396 (880)
211 PF03962 Mnd1: Mnd1 family; I 29.1 3.7E+02 0.0081 23.1 11.6 91 129-219 67-167 (188)
212 PF09763 Sec3_C: Exocyst compl 29.0 5.5E+02 0.012 26.1 10.5 10 172-181 64-73 (701)
213 PRK10869 recombination and rep 28.9 6E+02 0.013 25.4 12.7 144 50-202 248-392 (553)
214 PRK00846 hypothetical protein; 28.8 2.5E+02 0.0054 21.3 6.1 11 194-204 48-58 (77)
215 cd00089 HR1 Protein kinase C-r 28.8 2.2E+02 0.0048 20.4 8.4 35 148-182 5-39 (72)
216 smart00502 BBC B-Box C-termina 28.7 2.5E+02 0.0053 20.9 11.8 21 194-214 72-92 (127)
217 PF05529 Bap31: B-cell recepto 28.7 2.4E+02 0.0051 23.8 6.7 31 116-146 110-140 (192)
218 PF15035 Rootletin: Ciliary ro 28.1 3.9E+02 0.0085 23.0 13.4 38 183-220 102-139 (182)
219 PF15458 NTR2: Nineteen comple 28.1 2.8E+02 0.006 25.0 7.4 52 124-175 201-252 (254)
220 KOG1962 B-cell receptor-associ 27.9 1.9E+02 0.0042 26.0 6.2 62 143-211 149-210 (216)
221 PRK04758 hypothetical protein; 27.9 1.7E+02 0.0037 25.3 5.8 92 23-122 40-140 (181)
222 smart00745 MIT Microtubule Int 27.9 94 0.002 22.1 3.6 23 196-218 51-73 (77)
223 PF10281 Ish1: Putative stress 27.9 99 0.0021 19.7 3.3 31 22-59 7-37 (38)
224 TIGR02894 DNA_bind_RsfA transc 27.8 4E+02 0.0087 23.0 8.0 8 172-179 131-138 (161)
225 smart00503 SynN Syntaxin N-ter 27.8 2.6E+02 0.0057 20.9 9.1 24 126-149 3-26 (117)
226 PF10224 DUF2205: Predicted co 27.0 2.9E+02 0.0062 21.1 6.6 48 145-192 16-63 (80)
227 PF09789 DUF2353: Uncharacteri 27.0 5.5E+02 0.012 24.4 16.3 42 45-91 66-109 (319)
228 PF09602 PhaP_Bmeg: Polyhydrox 26.8 4.2E+02 0.0092 23.0 10.9 17 199-215 83-99 (165)
229 PRK05892 nucleoside diphosphat 26.5 3.7E+02 0.0081 22.5 7.4 64 145-214 11-74 (158)
230 PF04912 Dynamitin: Dynamitin 26.4 5.6E+02 0.012 24.2 13.9 120 91-210 221-373 (388)
231 PF10267 Tmemb_cc2: Predicted 26.2 6.2E+02 0.013 24.7 12.6 25 17-42 120-144 (395)
232 PF06810 Phage_GP20: Phage min 26.2 2.8E+02 0.0061 23.2 6.6 39 172-213 40-81 (155)
233 PF02185 HR1: Hr1 repeat; Int 26.1 2.4E+02 0.0053 20.0 7.0 27 153-179 2-28 (70)
234 PRK15178 Vi polysaccharide exp 26.0 6.5E+02 0.014 24.9 10.2 22 196-217 316-337 (434)
235 PRK11519 tyrosine kinase; Prov 25.8 7.4E+02 0.016 25.4 15.2 40 171-210 351-393 (719)
236 PRK13879 conjugal transfer pro 25.7 5.2E+02 0.011 23.6 10.4 42 119-160 26-67 (253)
237 PLN02943 aminoacyl-tRNA ligase 25.7 2.6E+02 0.0057 29.9 7.7 23 194-216 931-953 (958)
238 PRK06798 fliD flagellar cappin 25.6 1.7E+02 0.0037 28.4 6.0 48 129-179 377-424 (440)
239 PF11853 DUF3373: Protein of u 25.3 1.4E+02 0.0029 30.0 5.2 8 172-179 44-51 (489)
240 KOG1666 V-SNARE [Intracellular 25.3 1.9E+02 0.004 26.2 5.6 43 171-219 48-90 (220)
241 KOG0981 DNA topoisomerase I [R 25.3 3.1E+02 0.0066 28.7 7.7 65 114-181 619-698 (759)
242 PF08826 DMPK_coil: DMPK coile 25.3 2.7E+02 0.0058 20.2 6.6 20 187-206 39-58 (61)
243 TIGR02977 phageshock_pspA phag 24.9 4.6E+02 0.01 22.7 11.7 35 131-165 45-79 (219)
244 PF07795 DUF1635: Protein of u 24.9 4.5E+02 0.0098 23.7 7.9 54 126-179 3-60 (214)
245 PF14662 CCDC155: Coiled-coil 24.8 5E+02 0.011 23.1 13.9 84 132-218 68-154 (193)
246 KOG3647 Predicted coiled-coil 24.7 6.1E+02 0.013 24.1 9.9 99 113-220 62-166 (338)
247 PRK02119 hypothetical protein; 24.7 2.9E+02 0.0063 20.4 7.1 8 139-146 10-17 (73)
248 PF09325 Vps5: Vps5 C terminal 24.2 4.4E+02 0.0095 22.2 20.4 75 91-167 68-150 (236)
249 KOG0612 Rho-associated, coiled 24.1 6.2E+02 0.013 28.6 10.1 18 196-213 510-527 (1317)
250 TIGR00293 prefoldin, archaeal 24.0 3.5E+02 0.0075 21.0 8.1 25 192-216 84-108 (126)
251 TIGR03017 EpsF chain length de 24.0 6E+02 0.013 23.8 10.1 84 131-220 282-365 (444)
252 PF07851 TMPIT: TMPIT-like pro 23.9 6.4E+02 0.014 24.1 9.4 80 132-217 5-91 (330)
253 PF15290 Syntaphilin: Golgi-lo 23.9 6.3E+02 0.014 24.0 10.1 41 119-159 49-96 (305)
254 PF02257 RFX_DNA_binding: RFX 23.8 15 0.00034 28.2 -1.3 15 117-131 38-52 (85)
255 TIGR02791 VirB5 P-type DNA tra 23.6 2.8E+02 0.0061 24.2 6.4 49 115-163 18-66 (220)
256 PRK09841 cryptic autophosphory 23.5 8.2E+02 0.018 25.2 15.2 41 171-211 351-394 (726)
257 COG2433 Uncharacterized conser 23.5 6.2E+02 0.013 26.4 9.5 10 63-72 341-350 (652)
258 PRK08032 fliD flagellar cappin 23.4 2.1E+02 0.0045 27.9 6.0 33 135-167 410-442 (462)
259 PF07544 Med9: RNA polymerase 23.3 3.2E+02 0.007 20.4 8.2 41 172-216 41-81 (83)
260 PF02646 RmuC: RmuC family; I 23.3 2.8E+02 0.0061 25.4 6.6 35 142-179 10-44 (304)
261 PRK00736 hypothetical protein; 23.3 3E+02 0.0065 20.0 6.6 6 135-140 9-14 (68)
262 PF10241 KxDL: Uncharacterized 23.2 3.3E+02 0.0072 20.5 8.8 21 147-167 24-44 (88)
263 cd07645 I-BAR_IMD_BAIAP2L1 Inv 23.2 3.9E+02 0.0085 24.3 7.3 33 184-216 98-131 (226)
264 PHA03332 membrane glycoprotein 23.1 5.1E+02 0.011 29.0 9.1 16 201-216 979-994 (1328)
265 KOG0709 CREB/ATF family transc 23.1 2.9E+02 0.0062 27.7 6.9 66 148-217 251-316 (472)
266 TIGR03121 one_C_dehyd_A formyl 23.0 77 0.0017 32.1 3.1 25 36-62 201-225 (556)
267 PF13815 Dzip-like_N: Iguana/D 22.9 3E+02 0.0065 21.7 5.9 20 83-104 28-47 (118)
268 KOG0978 E3 ubiquitin ligase in 22.8 9.2E+02 0.02 25.5 18.9 86 136-221 494-579 (698)
269 PRK10698 phage shock protein P 22.8 5.3E+02 0.011 22.7 12.1 80 138-217 52-143 (222)
270 PF13870 DUF4201: Domain of un 22.7 4.5E+02 0.0097 21.8 11.6 63 131-193 42-104 (177)
271 KOG0837 Transcriptional activa 22.6 6.2E+02 0.013 23.7 8.6 35 177-211 231-265 (279)
272 PF06160 EzrA: Septation ring 22.6 7.8E+02 0.017 24.6 10.7 51 130-180 100-150 (560)
273 PLN02320 seryl-tRNA synthetase 22.6 8E+02 0.017 24.7 10.0 23 189-211 139-161 (502)
274 cd07681 F-BAR_PACSIN3 The F-BA 22.6 4.8E+02 0.01 23.8 7.9 40 182-221 195-235 (258)
275 cd01304 FMDH_A Formylmethanofu 22.4 80 0.0017 31.9 3.1 25 36-62 197-221 (541)
276 PRK10929 putative mechanosensi 22.3 1.1E+03 0.024 26.2 16.5 170 46-219 51-233 (1109)
277 PF09789 DUF2353: Uncharacteri 22.2 6.8E+02 0.015 23.8 17.1 50 132-181 66-115 (319)
278 PF03954 Lectin_N: Hepatic lec 22.1 99 0.0021 26.1 3.1 30 184-213 84-113 (138)
279 PF12795 MscS_porin: Mechanose 22.0 5.4E+02 0.012 22.5 16.5 63 155-220 149-211 (240)
280 PF08317 Spc7: Spc7 kinetochor 21.9 6.3E+02 0.014 23.3 15.3 14 203-216 278-291 (325)
281 PRK06798 fliD flagellar cappin 21.9 1.8E+02 0.0039 28.4 5.3 51 136-189 377-427 (440)
282 PF06694 Plant_NMP1: Plant nuc 21.6 7.1E+02 0.015 23.9 8.9 68 104-178 67-147 (325)
283 PF12329 TMF_DNA_bd: TATA elem 21.6 3.4E+02 0.0073 20.0 9.5 65 140-218 7-71 (74)
284 TIGR00219 mreC rod shape-deter 21.4 5E+02 0.011 23.7 7.8 30 128-157 56-85 (283)
285 PF04799 Fzo_mitofusin: fzo-li 21.3 4E+02 0.0087 23.1 6.7 20 162-181 133-152 (171)
286 PTZ00419 valyl-tRNA synthetase 21.3 4.1E+02 0.0088 28.5 8.1 21 197-217 974-994 (995)
287 PF04582 Reo_sigmaC: Reovirus 21.2 75 0.0016 30.2 2.5 33 125-157 50-82 (326)
288 TIGR00219 mreC rod shape-deter 21.1 4.1E+02 0.0088 24.3 7.2 45 129-176 64-108 (283)
289 TIGR03517 GldM_gliding gliding 21.1 3.4E+02 0.0074 27.4 7.1 38 182-219 65-102 (523)
290 PF12325 TMF_TATA_bd: TATA ele 21.1 4.5E+02 0.0098 21.3 6.8 47 108-154 14-60 (120)
291 PF09403 FadA: Adhesion protei 21.0 4.7E+02 0.01 21.5 8.7 25 126-150 14-39 (126)
292 PF10158 LOH1CR12: Tumour supp 21.0 4.8E+02 0.01 21.5 7.8 45 153-200 39-83 (131)
293 PF12081 GldM_N: GldM N-termin 21.0 5.2E+02 0.011 21.9 7.4 45 175-219 28-72 (194)
294 TIGR00255 conserved hypothetic 20.7 6.8E+02 0.015 23.2 13.3 99 54-163 140-238 (291)
295 PF10779 XhlA: Haemolysin XhlA 20.7 3.3E+02 0.0072 19.6 6.4 9 171-179 39-47 (71)
296 PF06695 Sm_multidrug_ex: Puta 20.6 1.4E+02 0.003 23.9 3.6 37 188-224 40-76 (121)
297 KOG0804 Cytoplasmic Zn-finger 20.5 8.9E+02 0.019 24.5 11.1 9 38-46 316-324 (493)
298 smart00592 BRK domain in trans 20.5 51 0.0011 22.5 0.9 24 16-47 20-43 (45)
299 KOG4643 Uncharacterized coiled 20.4 1.2E+03 0.027 26.0 12.4 45 37-81 245-291 (1195)
300 PF01920 Prefoldin_2: Prefoldi 20.4 3.6E+02 0.0078 19.8 10.4 20 162-181 25-44 (106)
301 cd07658 F-BAR_NOSTRIN The F-BA 20.4 5.5E+02 0.012 22.7 7.7 40 182-221 198-238 (239)
302 PF05377 FlaC_arch: Flagella a 20.3 1.9E+02 0.004 20.8 3.8 31 142-179 4-34 (55)
303 TIGR03319 YmdA_YtgF conserved 20.3 7.3E+02 0.016 24.7 9.2 80 134-213 65-144 (514)
304 PF12777 MT: Microtubule-bindi 20.2 2.2E+02 0.0047 26.5 5.3 9 73-81 155-163 (344)
305 PF02388 FemAB: FemAB family; 20.2 1.7E+02 0.0036 27.9 4.6 52 166-221 242-293 (406)
306 PF02346 Vac_Fusion: Chordopox 20.1 2.9E+02 0.0062 19.9 4.7 47 149-195 5-51 (57)
No 1
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.30 E-value=2.5 Score=34.56 Aligned_cols=121 Identities=16% Similarity=0.197 Sum_probs=56.1
Q ss_pred HHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHhCCCCCChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027314 84 AARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRK 163 (225)
Q Consensus 84 a~~l~elLe~vgls~~sLs~~G~~aL~aLa~~A~~L~~~dts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k 163 (225)
..++..-|.+.|+....+..++. +....+...++..|.+|=...-.--..+..+...+..+..-...
T Consensus 4 ~~yiN~~L~s~G~~~~~~~~~~~-------------~~~~~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~ 70 (151)
T PF11559_consen 4 IEYINQQLLSRGYPSDGLLFDSA-------------EESEDNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIER 70 (151)
T ss_pred HHHHHHHHHHCCCCCCCccCccc-------------ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 35677778888888777666555 22222333333333333322222222222222222222211111
Q ss_pred HHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHh
Q 027314 164 AIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSI 217 (225)
Q Consensus 164 ~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~ 217 (225)
--.....|++.+++++...+....+...-....+.+..+.....+.+..++..+
T Consensus 71 l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~ 124 (151)
T PF11559_consen 71 LQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQL 124 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122245555555555555555555555556666666666666555555443
No 2
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=91.89 E-value=3.6 Score=35.90 Aligned_cols=84 Identities=17% Similarity=0.224 Sum_probs=70.3
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHH
Q 027314 128 SFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYL 207 (225)
Q Consensus 128 sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~ 207 (225)
.=.+-|..|.++++++..+..++..|...|..- ..+ -.+.|.++++.-+++|.-+..+.-.+.+|+.+.+.++
T Consensus 9 ar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~l----q~R---q~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q 81 (194)
T PF15619_consen 9 ARLHKIKELQNELAELQRKLQELRKENKTLKQL----QKR---QEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQ 81 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH---HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999999999888332 222 2556888998889999999999999999999999999
Q ss_pred HHHHhHHHHhh
Q 027314 208 QQYNNYKVSIF 218 (225)
Q Consensus 208 ~r~~~~~~~~~ 218 (225)
+++...+..+.
T Consensus 82 ~~~r~~~~klk 92 (194)
T PF15619_consen 82 EQERELERKLK 92 (194)
T ss_pred HHHHHHHHHHH
Confidence 99988887765
No 3
>PRK09039 hypothetical protein; Validated
Probab=91.19 E-value=3.3 Score=38.84 Aligned_cols=72 Identities=17% Similarity=0.233 Sum_probs=37.6
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHH
Q 027314 128 SFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQY 206 (225)
Q Consensus 128 sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey 206 (225)
..-..+..+..++.+.+....+.+.++..| +.+|+. ||++|..++......+.+..+-+..+.-|+.++..-
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L----~~qI~a---Lr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELL----NQQIAA---LRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHH----HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555 445555 466666666555555555555444444444444444
No 4
>PRK11637 AmiB activator; Provisional
Probab=90.67 E-value=4.6 Score=38.40 Aligned_cols=83 Identities=10% Similarity=0.101 Sum_probs=48.1
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHH
Q 027314 135 DISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYK 214 (225)
Q Consensus 135 dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~ 214 (225)
++..++.+++++....+.+++.+++.+......+..+.+.|..++........+...-.+.++-+..++.+.+.++...+
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666666655555555555555556666666655555555566656666666666666666655544
Q ss_pred HHh
Q 027314 215 VSI 217 (225)
Q Consensus 215 ~~~ 217 (225)
..|
T Consensus 124 ~~l 126 (428)
T PRK11637 124 RLL 126 (428)
T ss_pred HHH
Confidence 433
No 5
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=90.44 E-value=4.2 Score=31.18 Aligned_cols=77 Identities=13% Similarity=0.187 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----cCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhh
Q 027314 143 VEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLE----DDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIF 218 (225)
Q Consensus 143 ~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le----~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~ 218 (225)
..+.+..++.++..|++.|+++...-..|...|.--- ..|..+|.++.+-..++.++..=+--..+++.++...||
T Consensus 6 ~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l~ 85 (88)
T PF14389_consen 6 LHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLYRQLF 85 (88)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788889999999999999988544544443321 125788999999999999999988888888888888776
Q ss_pred h
Q 027314 219 C 219 (225)
Q Consensus 219 ~ 219 (225)
.
T Consensus 86 ~ 86 (88)
T PF14389_consen 86 Q 86 (88)
T ss_pred h
Confidence 4
No 6
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=89.62 E-value=13 Score=34.32 Aligned_cols=160 Identities=16% Similarity=0.187 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHhcccc-ccC-CC--hhHHHHHHHHHHHHHHhCCCC------CChhhH
Q 027314 63 TKAANIVAADFRQKAAEYR---SQAARIREILENVGLA-QES-LP--SNVVSSAQVLANVANLLNIRD------TELSSF 129 (225)
Q Consensus 63 Dee~~Ll~~d~~qk~~Ey~---aea~~l~elLe~vgls-~~s-Ls--~~G~~aL~aLa~~A~~L~~~d------ts~~sl 129 (225)
|+|...++.+-.-....|+ +....++.|++-.|=- ..+ |. .-=+.||++|+++-..|.-.. .++...
T Consensus 75 ~~e~~Sv~ses~V~VngY~Vk~S~~silq~If~KHGDIAsNc~lkS~~~RS~yLe~Lc~IIqeLq~t~~~~LS~~dl~e~ 154 (269)
T PF05278_consen 75 DEEMSSVISESIVSVNGYQVKPSQVSILQKIFEKHGDIASNCKLKSQQFRSYYLECLCDIIQELQSTPLKELSESDLKEM 154 (269)
T ss_pred chhhhhccccceeeECCEEEcHhHHHHHHHHHHhCccHhhccccCcHHHHHHHHHHHHHHHHHHhcCcHhhhhHHHHHHH
Confidence 4455555554444455565 4567788888755411 111 11 123568999999998885322 244455
Q ss_pred HHHHHHhhhhH----------HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHH
Q 027314 130 LVAMGDISLRK----------TAVEEKRA------KVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWK 193 (225)
Q Consensus 130 ~~ai~dLt~~~----------~~~e~~~~------r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~ 193 (225)
...+.||.+-- .++-+... .+..+.+.....+...-..++.+.+.|++.+.++.++..++.++.
T Consensus 155 ~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~ 234 (269)
T PF05278_consen 155 IATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMK 234 (269)
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677776322 22222211 122222233333333333334456677777777788888888888
Q ss_pred HhHHHHHhhHHHHHHHHHhHHHHhhhhhc
Q 027314 194 TNLAVMASKERQYLQQYNNYKVSIFCYHY 222 (225)
Q Consensus 194 r~~k~L~~K~~Ey~~r~~~~~~~~~~~~~ 222 (225)
-.+.-|.-|......++..++++..+||-
T Consensus 235 ~rl~~l~~~~~~l~k~~~~~~sKV~kf~~ 263 (269)
T PF05278_consen 235 GRLGELEMESTRLSKTIKSIKSKVEKFHG 263 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88888888888888888889989888874
No 7
>PF04518 Effector_1: Effector from type III secretion system; InterPro: IPR007606 This family contains several uncharacterised chlamydial proteins.
Probab=87.62 E-value=16 Score=35.34 Aligned_cols=133 Identities=14% Similarity=0.138 Sum_probs=81.7
Q ss_pred HHHHHhccccccCCChhHHHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHhhhhHH--HHHHHHHHHHHHHHHHHHHHHH
Q 027314 88 REILENVGLAQESLPSNVVSSAQVLANVANLLNIRDT--ELSSFLVAMGDISLRKT--AVEEKRAKVQKESKILLDYTRK 163 (225)
Q Consensus 88 ~elLe~vgls~~sLs~~G~~aL~aLa~~A~~L~~~dt--s~~sl~~ai~dLt~~~~--~~e~~~~r~~~e~~~L~~~l~k 163 (225)
++.|+.+| .+=.+|--|..++|.|-+........++ +++||+.- ...-...| ..+....++++|.+-+..+++.
T Consensus 141 ~~~L~~L~-~elnfsN~aa~~~N~ll~~i~~F~~a~vYynl~sYl~Q-~~~g~~~F~g~~~~a~~~l~~E~~~~~~di~~ 218 (379)
T PF04518_consen 141 EDFLNPLG-SELNFSNLAANYGNPLLEIINSFNNASVYYNLSSYLGQ-SKMGTDNFPGSYFMALAKLEKEREQIRRDIKS 218 (379)
T ss_pred HHHHHHHH-HHhhcchHHHHHHHHHHHHHHcCcCcceeeehHHHHhh-hccchhccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 34577665 4556777899999999999999999887 78887765 11111111 2344455555566555555554
Q ss_pred HHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhhhhhc
Q 027314 164 AIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIFCYHY 222 (225)
Q Consensus 164 ~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~~~~~ 222 (225)
.-.....+.+.++..+.++.-..+|-.+....+.-...=+.-...++..+...|+--++
T Consensus 219 ~~~A~~~l~~~~~~V~~d~~lT~~Qk~~l~d~l~~Y~~~l~~i~~qL~~L~~~L~~L~~ 277 (379)
T PF04518_consen 219 CERAKAVLNKQLARVKADAKLTSEQKSELLDSLNNYKDNLNAISNQLSLLQSLLAPLSI 277 (379)
T ss_pred HHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 44444447888888888865555555554444444444444445555666666665554
No 8
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.86 E-value=2 Score=40.99 Aligned_cols=70 Identities=20% Similarity=0.176 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHh
Q 027314 143 VEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNN 212 (225)
Q Consensus 143 ~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~ 212 (225)
.+.-+.|++.|++.++.-...=-.+.+.|+.-..+|+-....++.++...+.|+.+|++|.+|-+.+..+
T Consensus 216 ~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n 285 (365)
T KOG2391|consen 216 REKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN 285 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 3455566666666664433333334444566666666666888899999999999999999996655544
No 9
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=86.35 E-value=13 Score=30.67 Aligned_cols=80 Identities=13% Similarity=0.080 Sum_probs=42.2
Q ss_pred hHHHHHHHhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhH
Q 027314 128 SFLVAMGDISLRKTAVEEKRAK----VQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKE 203 (225)
Q Consensus 128 sl~~ai~dLt~~~~~~e~~~~r----~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~ 203 (225)
++..|+..++..+-.+-+..+. +..+++.|-.+++...+.....++++.+++.+ +...+.++
T Consensus 40 ~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~d--------------v~~i~~dv 105 (126)
T PF07889_consen 40 SMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVRED--------------VSQIGDDV 105 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh--------------HHHHHHHH
Confidence 3455666666666655544433 33455555555555544444445555555544 44555555
Q ss_pred HHHHHHHHhHHHHhhhhh
Q 027314 204 RQYLQQYNNYKVSIFCYH 221 (225)
Q Consensus 204 ~Ey~~r~~~~~~~~~~~~ 221 (225)
...+..+..++.+|++..
T Consensus 106 ~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 106 DSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 555555555555555443
No 10
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=86.11 E-value=14 Score=32.74 Aligned_cols=51 Identities=12% Similarity=0.104 Sum_probs=27.0
Q ss_pred HHHHHHhhhcCcCchHHHHHHHHHhHHHHHh-----hHHHHHHHHHhHHHHhhhhh
Q 027314 171 LKRTLGQLEDDVAPCEAQMENWKTNLAVMAS-----KERQYLQQYNNYKVSIFCYH 221 (225)
Q Consensus 171 Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~-----K~~Ey~~r~~~~~~~~~~~~ 221 (225)
|++++++++.--..+...|..+...++-.-. +..|...|+..++.++.++.
T Consensus 89 L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl~~L~~~l~~~d 144 (251)
T PF11932_consen 89 LEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLEERQERLARLRAMLDDAD 144 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhhccC
Confidence 4555554443333333444444333333222 55677778888888877654
No 11
>PRK10884 SH3 domain-containing protein; Provisional
Probab=84.69 E-value=8 Score=34.08 Aligned_cols=72 Identities=11% Similarity=0.127 Sum_probs=41.3
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHh
Q 027314 133 MGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNN 212 (225)
Q Consensus 133 i~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~ 212 (225)
+-.+..++.+++.+...++.+++.... .++..+++.+....++..+..+-.+.+..++.|.+....++..
T Consensus 95 lp~le~el~~l~~~l~~~~~~~~~~~~----------~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 95 VPDLENQVKTLTDKLNNIDNTWNQRTA----------EMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555444444332222 2344455555444556666777777777788888877777777
Q ss_pred HH
Q 027314 213 YK 214 (225)
Q Consensus 213 ~~ 214 (225)
.+
T Consensus 165 ~~ 166 (206)
T PRK10884 165 KQ 166 (206)
T ss_pred HH
Confidence 76
No 12
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=84.13 E-value=16 Score=32.76 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027314 145 EKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLE 179 (225)
Q Consensus 145 ~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le 179 (225)
+...++...+..|..-+..-......|.+.+.+++
T Consensus 216 ~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 216 EELKELRRQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 33344444444444444444444444555555555
No 13
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=84.03 E-value=24 Score=38.20 Aligned_cols=84 Identities=14% Similarity=0.088 Sum_probs=57.2
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCch------HHHHHHHHHhHHHHHh
Q 027314 128 SFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPC------EAQMENWKTNLAVMAS 201 (225)
Q Consensus 128 sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l------~~q~~ew~r~~k~L~~ 201 (225)
+....+...++++...+.+....-.+++.|+++.++..+..+.++..|+++++-.-++ ...++.-++...+|-.
T Consensus 844 ~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~lek~~~~~~~~dKe~Ek~~~rk~~Ll~ 923 (1200)
T KOG0964|consen 844 SRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKNLEKEKKDNINFDKELEKLVRRKHMLLK 923 (1200)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555899999999999999888888887777542211 2445566666778888
Q ss_pred hHHHHHHHHH
Q 027314 202 KERQYLQQYN 211 (225)
Q Consensus 202 K~~Ey~~r~~ 211 (225)
|-+||.++|-
T Consensus 924 KreE~~ekIr 933 (1200)
T KOG0964|consen 924 KREECCEKIR 933 (1200)
T ss_pred HHHHHHHHHH
Confidence 9889999983
No 14
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=83.64 E-value=66 Score=34.84 Aligned_cols=90 Identities=13% Similarity=0.181 Sum_probs=43.6
Q ss_pred ChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhcCcCchHHHHHHHHHhHH
Q 027314 125 ELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIAR-------LTYLKRTLGQLEDDVAPCEAQMENWKTNLA 197 (225)
Q Consensus 125 s~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~-------~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k 197 (225)
....+...+..+..+.-+++.+...+..+++.+...++..... ...+...|..++....++..+..++.....
T Consensus 822 ~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~ 901 (1163)
T COG1196 822 RRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELA 901 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555544444444444333333333333 333344444444445555556666655555
Q ss_pred HHHhhHHHHHHHHHhHH
Q 027314 198 VMASKERQYLQQYNNYK 214 (225)
Q Consensus 198 ~L~~K~~Ey~~r~~~~~ 214 (225)
-+..+...+..++..+.
T Consensus 902 ~~~~~~~~~~~~~~~l~ 918 (1163)
T COG1196 902 ELKEEIEKLRERLEELE 918 (1163)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555555443
No 15
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=82.82 E-value=40 Score=31.18 Aligned_cols=48 Identities=8% Similarity=0.172 Sum_probs=35.8
Q ss_pred HHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhh
Q 027314 171 LKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIF 218 (225)
Q Consensus 171 Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~ 218 (225)
++..++..+.....++.+...+...+.-+..+..++..+|+..++.+.
T Consensus 221 ~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 221 QKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555667788888888888888888888888888887764
No 16
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=82.70 E-value=55 Score=35.38 Aligned_cols=92 Identities=13% Similarity=0.162 Sum_probs=43.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHH
Q 027314 129 FLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQ 208 (225)
Q Consensus 129 l~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~ 208 (225)
+-..+..++..+.++..+..+.+.+...+.+.+...-.....+.++|.+++.+...+..+...+......+..|...+..
T Consensus 847 l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 926 (1163)
T COG1196 847 LEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEV 926 (1163)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443333333333345555555555555555555555555555555555555
Q ss_pred HHHhHHHHhhhh
Q 027314 209 QYNNYKVSIFCY 220 (225)
Q Consensus 209 r~~~~~~~~~~~ 220 (225)
++.+....++.+
T Consensus 927 ~~~~~~~~~~~~ 938 (1163)
T COG1196 927 ELPELEEELEEE 938 (1163)
T ss_pred HHHHHHhhhccc
Confidence 555554444443
No 17
>PRK09039 hypothetical protein; Validated
Probab=82.53 E-value=43 Score=31.42 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=31.1
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHH
Q 027314 131 VAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAV 198 (225)
Q Consensus 131 ~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~ 198 (225)
.++........+.--+..+++.+++.| ++.++. |...|...+..-.+...+..+-.+.+..
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aL----r~Qla~---le~~L~~ae~~~~~~~~~i~~L~~~L~~ 183 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAAL----RRQLAA---LEAALDASEKRDRESQAKIADLGRRLNV 183 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555556666666 333444 3555555554444444555554444433
No 18
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=81.62 E-value=11 Score=27.24 Aligned_cols=43 Identities=21% Similarity=0.189 Sum_probs=31.5
Q ss_pred HHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhh
Q 027314 170 YLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIF 218 (225)
Q Consensus 170 ~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~ 218 (225)
...+.|.+++.++...|. .....+..|++.|+..+.+++.-|.
T Consensus 36 ea~~~l~qMe~E~~~~p~------s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 36 EAEELLKQMELEVRSLPP------SERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHCTS-H------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 357777777777655544 2346789999999999999987664
No 19
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=80.34 E-value=30 Score=28.87 Aligned_cols=71 Identities=14% Similarity=0.227 Sum_probs=45.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHH
Q 027314 137 SLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYL 207 (225)
Q Consensus 137 t~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~ 207 (225)
..+..+.+++..+++.++..+..+.......+..+++....+.......+.....|....+-+....++.+
T Consensus 80 ~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 80 QGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666777777777776666666666666666665555555666666666666666555555
No 20
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=80.34 E-value=95 Score=33.94 Aligned_cols=94 Identities=14% Similarity=0.254 Sum_probs=49.9
Q ss_pred CCCCChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc-CchHHHHHHHHHhHHHH
Q 027314 121 IRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDV-APCEAQMENWKTNLAVM 199 (225)
Q Consensus 121 ~~dts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~-a~l~~q~~ew~r~~k~L 199 (225)
..|.....+-..+-++-++..+++.+..+.+..+..+.+ +.-. ++++++.++.+. ..+.++-.+...+.+.|
T Consensus 334 ~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~----~~d~---l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L 406 (1074)
T KOG0250|consen 334 AQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKK----EVDR---LEKQIADLEKQTNNELGSELEERENKLEQL 406 (1074)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---HHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 445556666666666666666666555555555544422 2112 344444444332 33445555555566666
Q ss_pred HhhHHHHHHHHHhHHHHhhhhh
Q 027314 200 ASKERQYLQQYNNYKVSIFCYH 221 (225)
Q Consensus 200 ~~K~~Ey~~r~~~~~~~~~~~~ 221 (225)
+.-++..+.++++|...++++|
T Consensus 407 ~~evek~e~~~~~L~~e~~~~~ 428 (1074)
T KOG0250|consen 407 KKEVEKLEEQINSLREELNEVK 428 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666665554
No 21
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=80.08 E-value=15 Score=36.03 Aligned_cols=82 Identities=20% Similarity=0.214 Sum_probs=48.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHH
Q 027314 135 DISLRKTAVEEKRAKVQKESKILLDYT---RKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYN 211 (225)
Q Consensus 135 dLt~~~~~~e~~~~r~~~e~~~L~~~l---~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~ 211 (225)
....++...+......+.+...|++.+ +++|+. +..+|.+.+.+...+..+.++-..++.-|....++=+++++
T Consensus 42 q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~---~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La 118 (420)
T COG4942 42 QIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIAS---LEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLA 118 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333 444444 57777777766677777777777777777777777677666
Q ss_pred hHHHHhhh
Q 027314 212 NYKVSIFC 219 (225)
Q Consensus 212 ~~~~~~~~ 219 (225)
.+=+-++|
T Consensus 119 ~~L~A~~r 126 (420)
T COG4942 119 EQLAALQR 126 (420)
T ss_pred HHHHHHHh
Confidence 65555544
No 22
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=79.96 E-value=28 Score=30.70 Aligned_cols=84 Identities=14% Similarity=0.262 Sum_probs=40.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHH
Q 027314 131 VAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQY 210 (225)
Q Consensus 131 ~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~ 210 (225)
..+-......-+++.+..++.+++..+..-|.+.-.+...+...+.+|+.........+..+.-.-.-...+...|.++|
T Consensus 99 ~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i 178 (237)
T PF00261_consen 99 QQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKI 178 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 33444444444555555566666666666666666666556666666664433333333333333333333333444444
Q ss_pred HhHH
Q 027314 211 NNYK 214 (225)
Q Consensus 211 ~~~~ 214 (225)
..|.
T Consensus 179 ~~L~ 182 (237)
T PF00261_consen 179 RDLE 182 (237)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 23
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=79.64 E-value=83 Score=32.79 Aligned_cols=8 Identities=0% Similarity=0.123 Sum_probs=2.9
Q ss_pred HHHHhHHH
Q 027314 208 QQYNNYKV 215 (225)
Q Consensus 208 ~r~~~~~~ 215 (225)
.++..++.
T Consensus 490 ~~~~~l~~ 497 (1164)
T TIGR02169 490 RELAEAEA 497 (1164)
T ss_pred HHHHHHHH
Confidence 33333333
No 24
>PRK04863 mukB cell division protein MukB; Provisional
Probab=78.62 E-value=1.2e+02 Score=34.24 Aligned_cols=167 Identities=17% Similarity=0.166 Sum_probs=98.8
Q ss_pred hhhHHHHHHHHHHHHhhcccCCCCCCCCCCCHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 027314 15 SRDAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQAARIREILENV 94 (225)
Q Consensus 15 ~~~~~~~s~V~sWL~~kF~~~~~pVP~FErN~dTl~~L~~LA~~NeaaDee~~Ll~~d~~qk~~Ey~aea~~l~elLe~v 94 (225)
++|..|+.-...=++.-.+ .++-+.|+.+|.- .|..+|+.+.+-..-|.. +..+....+.....++
T Consensus 806 ~~~~~~~~r~~~~~~~~~~--~~~~~~f~~~pe~-----~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~------ 871 (1486)
T PRK04863 806 SFDVQKLQRLHQAFSRFIG--SHLAVAFEADPEA-----ELRQLNRRRVELERALAD-HESQEQQQRSQLEQAK------ 871 (1486)
T ss_pred hhhHHHHHHHHHHHHHHHh--hCcchhcCCCcHH-----HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH------
Confidence 3566666665555555445 7888999999984 566777666554443332 2222222222222222
Q ss_pred cccccCCChhHHHHHHHHHHHHHHhCCCCCChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027314 95 GLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRT 174 (225)
Q Consensus 95 gls~~sLs~~G~~aL~aLa~~A~~L~~~dts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~ 174 (225)
++...|+.|.-.+++|--. +|+ .+..+++++..+ .+.=.+|+......++.|...
T Consensus 872 ---------~~~~~l~~~~~~~~~l~~~-----~~~-------~~~~~~~~~~~~----~~~a~~y~~~~~~~L~qLE~~ 926 (1486)
T PRK04863 872 ---------EGLSALNRLLPRLNLLADE-----TLA-------DRVEEIREQLDE----AEEAKRFVQQHGNALAQLEPI 926 (1486)
T ss_pred ---------HHHHHHHHhchhhhhcCCc-----cHH-------HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 2333455555555555321 233 344455555542 333347788888888889999
Q ss_pred HHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhhhhhccC
Q 027314 175 LGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIFCYHYVG 224 (225)
Q Consensus 175 L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~~~~~~~ 224 (225)
|..|..+| .+-+.-.+..+-......+..+|+-++..+..|-|+.|
T Consensus 927 l~~L~~Dp----~~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 972 (1486)
T PRK04863 927 VSVLQSDP----EQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFS 972 (1486)
T ss_pred HHHhCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999875 44444455566777777888888888887776665544
No 25
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=77.75 E-value=31 Score=35.75 Aligned_cols=83 Identities=14% Similarity=0.197 Sum_probs=50.8
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHH
Q 027314 135 DISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYK 214 (225)
Q Consensus 135 dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~ 214 (225)
++..+.-.+.++..++..+++...+..++=..| +++.|..+....+.+-.-=.+|...++-|+.+++.+..++..++
T Consensus 583 ~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R---~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk 659 (717)
T PF10168_consen 583 ELQEERKSLRESAEKLAERYEEAKDKQEKLMKR---VDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLK 659 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333444443333333333 45566666655454544457899999999999999999999999
Q ss_pred HHhhhh
Q 027314 215 VSIFCY 220 (225)
Q Consensus 215 ~~~~~~ 220 (225)
.++++.
T Consensus 660 ~k~~~Q 665 (717)
T PF10168_consen 660 KKLDYQ 665 (717)
T ss_pred HHHHHH
Confidence 888753
No 26
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=77.60 E-value=85 Score=34.30 Aligned_cols=75 Identities=16% Similarity=0.245 Sum_probs=51.4
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHh
Q 027314 133 MGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNN 212 (225)
Q Consensus 133 i~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~ 212 (225)
...++.++.+.+++...+++++++++. .++. |+..+.++..+.-..+.....-.+....++-|++.+...+..
T Consensus 389 ~~~~~~~~~e~e~k~~~L~~evek~e~----~~~~---L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~ 461 (1074)
T KOG0250|consen 389 NNELGSELEERENKLEQLKKEVEKLEE----QINS---LREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKD 461 (1074)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHH----HHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777778887777777777744 4444 677777777665555555555667777777777777766655
Q ss_pred HH
Q 027314 213 YK 214 (225)
Q Consensus 213 ~~ 214 (225)
++
T Consensus 462 lk 463 (1074)
T KOG0250|consen 462 LK 463 (1074)
T ss_pred HH
Confidence 54
No 27
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=76.09 E-value=65 Score=29.72 Aligned_cols=88 Identities=15% Similarity=0.192 Sum_probs=59.7
Q ss_pred CCCChhh----HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHH
Q 027314 122 RDTELSS----FLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLA 197 (225)
Q Consensus 122 ~dts~~s----l~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k 197 (225)
+.+++.+ +-.+|.++..++..++++...+..+-..|..+++|.-.-+++.++.|..|+ +--|+=|++..+--.
T Consensus 156 r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq---~vRPAfmdEyEklE~ 232 (267)
T PF10234_consen 156 RPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ---SVRPAFMDEYEKLEE 232 (267)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcChHHHHHHHHHHH
Confidence 4444444 445566677777778888887888888888888888888777888888887 556677777655555
Q ss_pred HHHhhHHHHHHHHHh
Q 027314 198 VMASKERQYLQQYNN 212 (225)
Q Consensus 198 ~L~~K~~Ey~~r~~~ 212 (225)
=|+.=-..|..++-|
T Consensus 233 EL~~lY~~Y~~kfRN 247 (267)
T PF10234_consen 233 ELQKLYEIYVEKFRN 247 (267)
T ss_pred HHHHHHHHHHHHHHh
Confidence 555545555555443
No 28
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.19 E-value=69 Score=29.61 Aligned_cols=48 Identities=6% Similarity=0.165 Sum_probs=20.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027314 132 AMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLE 179 (225)
Q Consensus 132 ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le 179 (225)
.+.+++.+..+++.+...++..++.++......-.+...++..|++|+
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~ 86 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQ 86 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443333333333333333333
No 29
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=74.67 E-value=94 Score=33.46 Aligned_cols=27 Identities=7% Similarity=0.111 Sum_probs=17.4
Q ss_pred cCCChhHHHHHHHHHHHHHHhCCCCCC
Q 027314 99 ESLPSNVVSSAQVLANVANLLNIRDTE 125 (225)
Q Consensus 99 ~sLs~~G~~aL~aLa~~A~~L~~~dts 125 (225)
+.|=..-...|.-..++..++...-.+
T Consensus 434 t~l~~~h~~lL~K~~di~kQle~~~~s 460 (980)
T KOG0980|consen 434 TELRQEHADLLRKYDDIQKQLESAEQS 460 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555666777778888777655443
No 30
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=74.43 E-value=1e+02 Score=31.11 Aligned_cols=77 Identities=12% Similarity=0.145 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHH
Q 027314 138 LRKTAVEEKRAKVQKESKILLDYTRKA--IARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYK 214 (225)
Q Consensus 138 ~~~~~~e~~~~r~~~e~~~L~~~l~k~--l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~ 214 (225)
.+..+.-.+..+++.++..+.+.+... -.....+.+.+++++.....+..+...+.+.++-+..++.++..++..+.
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 469 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKT 469 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666666431 12223355666666655566666666666666666666666655554443
No 31
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=74.08 E-value=94 Score=30.58 Aligned_cols=75 Identities=21% Similarity=0.241 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHH
Q 027314 140 KTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYK 214 (225)
Q Consensus 140 ~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~ 214 (225)
.+...+++..++.+++.+.+.++..--....|.++|++++.+...+..+..+-...++-+..++.+-..++..++
T Consensus 33 ~~a~~~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 33 AAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 334445556666677777666666665666678888888888788888888777777888888777777776655
No 32
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=73.46 E-value=52 Score=27.31 Aligned_cols=68 Identities=12% Similarity=0.195 Sum_probs=33.9
Q ss_pred HHHHHHhccccccCCChh-HHHHHHHHHHHHH---------------HhCCCCC---ChhhHHHHHHHhhhhHHHHHHHH
Q 027314 87 IREILENVGLAQESLPSN-VVSSAQVLANVAN---------------LLNIRDT---ELSSFLVAMGDISLRKTAVEEKR 147 (225)
Q Consensus 87 l~elLe~vgls~~sLs~~-G~~aL~aLa~~A~---------------~L~~~dt---s~~sl~~ai~dLt~~~~~~e~~~ 147 (225)
.++|.+.++ ...++. ...+|+.|+.--. +=+..++ ++..+...+.+|..++.+++...
T Consensus 19 ~~di~~nL~---~~~~K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~ 95 (169)
T PF07106_consen 19 AQDIFDNLH---NKVGKTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEV 95 (169)
T ss_pred HHHHHHHHH---hhccHHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666663 344433 3457777776432 2222211 34445555555555555555555
Q ss_pred HHHHHHHHHH
Q 027314 148 AKVQKESKIL 157 (225)
Q Consensus 148 ~r~~~e~~~L 157 (225)
..+..++..|
T Consensus 96 k~l~~eL~~L 105 (169)
T PF07106_consen 96 KSLEAELASL 105 (169)
T ss_pred HHHHHHHHHH
Confidence 5444444444
No 33
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=72.82 E-value=79 Score=29.86 Aligned_cols=92 Identities=14% Similarity=0.210 Sum_probs=55.6
Q ss_pred ChhhHHHHHHHhhhhHHHHHH-HHHHHHHHHHHHHHHHHHH------H-------HHHHHHHHHHHhhhcCcCchHHHHH
Q 027314 125 ELSSFLVAMGDISLRKTAVEE-KRAKVQKESKILLDYTRKA------I-------ARLTYLKRTLGQLEDDVAPCEAQME 190 (225)
Q Consensus 125 s~~sl~~ai~dLt~~~~~~e~-~~~r~~~e~~~L~~~l~k~------l-------~~~~~Lk~~L~~Le~~~a~l~~q~~ 190 (225)
.+.++.++|..|+.++.-+.. ....++++++.|...+..- . .++..|=+.|..++.- .+.=..+.
T Consensus 240 ~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~-~~~lP~lv 318 (388)
T PF04912_consen 240 SSSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILPRWDPY-APSLPSLV 318 (388)
T ss_pred CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHH-hhhhhHHH
Confidence 466788888888887777743 4466666777766555321 1 2222233334444422 22225667
Q ss_pred HHHHhHHHHHhhHHHHHHHHHhHHHHh
Q 027314 191 NWKTNLAVMASKERQYLQQYNNYKVSI 217 (225)
Q Consensus 191 ew~r~~k~L~~K~~Ey~~r~~~~~~~~ 217 (225)
++.+.++.|+....+|-+.+..++...
T Consensus 319 ~RL~tL~~lH~~a~~~~~~l~~le~~q 345 (388)
T PF04912_consen 319 ERLKTLKSLHEEAAEFSQTLSELESQQ 345 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888888877777666544
No 34
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=72.28 E-value=24 Score=32.37 Aligned_cols=55 Identities=22% Similarity=0.181 Sum_probs=39.5
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCch
Q 027314 131 VAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPC 185 (225)
Q Consensus 131 ~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l 185 (225)
+...|+..+..+..++..+.+.+-+.|.+-++.--+....+++.|+.|+-+.+.+
T Consensus 128 ~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~L 182 (290)
T COG4026 128 PEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRL 182 (290)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777788888888888888887777776676667777777777554433
No 35
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=72.21 E-value=33 Score=34.61 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=46.5
Q ss_pred HHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhhhhhc
Q 027314 171 LKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIFCYHY 222 (225)
Q Consensus 171 Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~~~~~ 222 (225)
|+.+..+++.-+.-...++.+|.-.++-|++-+++-..+|.++++.....||
T Consensus 307 l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~ 358 (622)
T COG5185 307 LKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHK 358 (622)
T ss_pred HhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 5777777777778889999999999999999999999999999998888887
No 36
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=72.12 E-value=67 Score=28.03 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=17.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027314 136 ISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLE 179 (225)
Q Consensus 136 Lt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le 179 (225)
+..+....+.+...+..+++.+.+.++..-.++..+++.|...+
T Consensus 61 ~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~ 104 (302)
T PF10186_consen 61 LKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRR 104 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444443333333444444333
No 37
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=71.84 E-value=63 Score=28.44 Aligned_cols=49 Identities=14% Similarity=0.200 Sum_probs=34.1
Q ss_pred HHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhhh
Q 027314 171 LKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIFC 219 (225)
Q Consensus 171 Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~~ 219 (225)
..+.+..++.....++.....-..++|-|..+..+|-+|...|+..|..
T Consensus 132 aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~ 180 (237)
T PF00261_consen 132 AEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRD 180 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Confidence 3444444444456666667777778888888888888888888877654
No 38
>PRK11637 AmiB activator; Provisional
Probab=71.76 E-value=94 Score=29.58 Aligned_cols=55 Identities=15% Similarity=0.023 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHH
Q 027314 154 SKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYN 211 (225)
Q Consensus 154 ~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~ 211 (225)
++....-++.+... ++..+.+++.....+..+..+....+.-|.....++..++.
T Consensus 182 L~~~k~~le~~~~~---l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~ 236 (428)
T PRK11637 182 LAAQKAELEEKQSQ---QKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLS 236 (428)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444 23333333333344444444444444444444444443333
No 39
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=71.59 E-value=26 Score=33.00 Aligned_cols=79 Identities=14% Similarity=0.186 Sum_probs=40.2
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHh
Q 027314 133 MGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNN 212 (225)
Q Consensus 133 i~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~ 212 (225)
|..|+-++..-.+...+.+.+|-.|+..+-+ |+..++++-.+-..+......=..+=.-|.+.+.++++|++.
T Consensus 215 ia~LseELa~k~Ee~~rQQEEIt~Llsqivd-------lQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E 287 (306)
T PF04849_consen 215 IASLSEELARKTEENRRQQEEITSLLSQIVD-------LQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAE 287 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555544444444445555544332222 233333333333333333333333344577888888888888
Q ss_pred HHHHhh
Q 027314 213 YKVSIF 218 (225)
Q Consensus 213 ~~~~~~ 218 (225)
...||.
T Consensus 288 ~~~mL~ 293 (306)
T PF04849_consen 288 CMAMLH 293 (306)
T ss_pred HHHHHH
Confidence 777764
No 40
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=71.02 E-value=1.6e+02 Score=31.92 Aligned_cols=37 Identities=8% Similarity=0.226 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHhH
Q 027314 47 RSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQ 83 (225)
Q Consensus 47 dTl~~L~~LA~~NeaaDee~~Ll~~d~~qk~~Ey~ae 83 (225)
+||..|..-++-=+..|.+-.+.+..+.++-.++++-
T Consensus 242 q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~k 278 (1265)
T KOG0976|consen 242 QTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAK 278 (1265)
T ss_pred hhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666777777777777777776666643
No 41
>PF15456 Uds1: Up-regulated During Septation
Probab=70.67 E-value=45 Score=27.25 Aligned_cols=31 Identities=3% Similarity=0.090 Sum_probs=16.7
Q ss_pred HHHHHHHhHHHHHhhHHHHHHHHHhHHHHhh
Q 027314 188 QMENWKTNLAVMASKERQYLQQYNNYKVSIF 218 (225)
Q Consensus 188 q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~ 218 (225)
....+.++..=+..|+....+|.+..+..|-
T Consensus 82 el~~~~rk~ee~~~eL~~le~R~~~~~~rLL 112 (124)
T PF15456_consen 82 ELAESDRKCEELAQELWKLENRLAEVRQRLL 112 (124)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555666666666655443
No 42
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=70.15 E-value=64 Score=27.00 Aligned_cols=90 Identities=13% Similarity=0.074 Sum_probs=45.3
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHH
Q 027314 128 SFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYL 207 (225)
Q Consensus 128 sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~ 207 (225)
+|-.-|-+|-+++-..+.....+..+.++-+.-+..=-..+..+...+..|+.+...+..-..++.+...-+..|+.+..
T Consensus 21 sle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 21 SLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554444444444433322222222223444555555555555555666666666666666666
Q ss_pred HHHHhHHHHh
Q 027314 208 QQYNNYKVSI 217 (225)
Q Consensus 208 ~r~~~~~~~~ 217 (225)
-..+++...|
T Consensus 101 ~~~~~~~~~l 110 (140)
T PF10473_consen 101 SLNSSLENLL 110 (140)
T ss_pred HHhHHHHHHH
Confidence 5555555544
No 43
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=69.74 E-value=62 Score=26.66 Aligned_cols=29 Identities=17% Similarity=0.365 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCcCch
Q 027314 154 SKILLDYTRKAIARLTYLKRTLGQLEDDVAPC 185 (225)
Q Consensus 154 ~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l 185 (225)
...+.+.++++... +++.+.....++...
T Consensus 80 ~~ei~~~i~~eV~~---v~~dv~~i~~dv~~v 108 (126)
T PF07889_consen 80 QKEISKQIKDEVTE---VREDVSQIGDDVDSV 108 (126)
T ss_pred HHHHHHHHHHHHHH---HHhhHHHHHHHHHHH
Confidence 33444445555544 566666666554333
No 44
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=69.39 E-value=1.5e+02 Score=30.91 Aligned_cols=33 Identities=21% Similarity=0.164 Sum_probs=29.5
Q ss_pred HHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhh
Q 027314 186 EAQMENWKTNLAVMASKERQYLQQYNNYKVSIF 218 (225)
Q Consensus 186 ~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~ 218 (225)
..|+..-+..++-+..++.+...++.++++.++
T Consensus 684 ~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~~~ 716 (717)
T PF10168_consen 684 ESQKRTIKEILKQQGEEIDELVKQIKNIKKIVN 716 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 488888889999999999999999999998764
No 45
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=68.40 E-value=51 Score=30.40 Aligned_cols=85 Identities=12% Similarity=0.098 Sum_probs=55.8
Q ss_pred ChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHH
Q 027314 125 ELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKER 204 (225)
Q Consensus 125 s~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~ 204 (225)
.+.+.-..+.++.++...++.+..|-..|++-.++.|..=..-==..-+..++|+.+...+=..-.+..||+.+|..=.+
T Consensus 177 ~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle 256 (267)
T PF10234_consen 177 QLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQLE 256 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45667788888888888888887776666665544433221111111355666665555556777788899999988888
Q ss_pred HHHHH
Q 027314 205 QYLQQ 209 (225)
Q Consensus 205 Ey~~r 209 (225)
+|..+
T Consensus 257 ~~~~~ 261 (267)
T PF10234_consen 257 EYNRR 261 (267)
T ss_pred HHHHH
Confidence 77654
No 46
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=68.00 E-value=1.5e+02 Score=30.39 Aligned_cols=113 Identities=9% Similarity=0.097 Sum_probs=70.3
Q ss_pred cCCChhHHHHHHHHHHHHHHhCCCCCChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 027314 99 ESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAI---ARLTYLKRTL 175 (225)
Q Consensus 99 ~sLs~~G~~aL~aLa~~A~~L~~~dts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l---~~~~~Lk~~L 175 (225)
+.|.++-+.+=+.|..+-- --...-..|..|..+..+.|+.+.+++.+..-|+..++++= +-........
T Consensus 269 ~~L~~D~nK~~~y~~~~~~-------k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er 341 (581)
T KOG0995|consen 269 ARLQDDVNKFQAYVSQMKS-------KKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLER 341 (581)
T ss_pred HHHHhHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3444555555444443321 12345677888999999999999999999999988887652 2222234455
Q ss_pred HhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhhhhh
Q 027314 176 GQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIFCYH 221 (225)
Q Consensus 176 ~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~~~~ 221 (225)
.+|+.++.....+.+.|+..+.=++. ||+++..+++.++..||
T Consensus 342 ~~l~r~l~~i~~~~d~l~k~vw~~~l---~~~~~f~~le~~~~~~~ 384 (581)
T KOG0995|consen 342 NKLKRELNKIQSELDRLSKEVWELKL---EIEDFFKELEKKFIDLN 384 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHH
Confidence 56666666666777777776665554 34445555555555554
No 47
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=67.73 E-value=1.2e+02 Score=29.11 Aligned_cols=13 Identities=8% Similarity=0.146 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q 027314 69 VAADFRQKAAEYR 81 (225)
Q Consensus 69 l~~d~~qk~~Ey~ 81 (225)
..+.+.+.+.+++
T Consensus 162 ~~~fl~~ql~~~~ 174 (498)
T TIGR03007 162 AQRFIDEQIKTYE 174 (498)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555555
No 48
>PRK04863 mukB cell division protein MukB; Provisional
Probab=67.23 E-value=2.3e+02 Score=32.21 Aligned_cols=43 Identities=19% Similarity=0.327 Sum_probs=21.8
Q ss_pred HHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHH
Q 027314 172 KRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYK 214 (225)
Q Consensus 172 k~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~ 214 (225)
...+.+++.....+..+..+....+..+.++..+|.+++..+.
T Consensus 382 eeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le 424 (1486)
T PRK04863 382 EARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALE 424 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444445555555555555555555555555444
No 49
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=65.98 E-value=97 Score=27.48 Aligned_cols=84 Identities=17% Similarity=0.153 Sum_probs=41.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHH
Q 027314 136 ISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKV 215 (225)
Q Consensus 136 Lt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~ 215 (225)
|..+.-.+|...+.+-.++++|+.-..+-.+-..-+++...+|-.....++.|.-+...-+-...+.+.|--.++..++.
T Consensus 86 L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~ 165 (193)
T PF14662_consen 86 LLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKK 165 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 33444444444555555566665555555555555555555555555555555544444444444444444444444443
Q ss_pred Hhhh
Q 027314 216 SIFC 219 (225)
Q Consensus 216 ~~~~ 219 (225)
-|-.
T Consensus 166 ~ieE 169 (193)
T PF14662_consen 166 TIEE 169 (193)
T ss_pred HHHH
Confidence 3333
No 50
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=65.84 E-value=98 Score=31.27 Aligned_cols=87 Identities=15% Similarity=0.202 Sum_probs=55.1
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------cCc----CchHHHHHHHHHhH
Q 027314 128 SFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLE-------DDV----APCEAQMENWKTNL 196 (225)
Q Consensus 128 sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le-------~~~----a~l~~q~~ew~r~~ 196 (225)
.|...|.+|+.++...+.+......+-+.|++.++-+-.....+...|+++. ++. ..-+.|+....--+
T Consensus 417 ~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHL 496 (518)
T PF10212_consen 417 YYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHL 496 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4889999999999999999999999999999998855444333334443333 322 11223444334444
Q ss_pred HHHHhhHHHHHHHHHhHH
Q 027314 197 AVMASKERQYLQQYNNYK 214 (225)
Q Consensus 197 k~L~~K~~Ey~~r~~~~~ 214 (225)
.-|..|+..=.++|.++|
T Consensus 497 asmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 497 ASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 445555555555555554
No 51
>smart00435 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Probab=65.19 E-value=1.2e+02 Score=29.48 Aligned_cols=72 Identities=14% Similarity=0.175 Sum_probs=53.8
Q ss_pred HHHHHHHhccccccCCChhHHHHHHHHHHHHHHhCCCCCChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 027314 86 RIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKIL 157 (225)
Q Consensus 86 ~l~elLe~vgls~~sLs~~G~~aL~aLa~~A~~L~~~dts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L 157 (225)
.+.+.|..++....+....-..+..++-.+|.+||=.-+-+-+|...|-.|...+.+.+.+..+++..+..+
T Consensus 232 ta~~~L~~~~~~~~s~~ek~~~yn~Anr~VAi~cnntraV~k~~~~~m~k~~~ki~~~~~~~~~~~~~~~~~ 303 (391)
T smart00435 232 TLQEQLKELTAKDGNVAEKILAYNRANREVAILCNHQRTVSKTHEKSMEKLQEKIKALKYQLKRLKKMILLF 303 (391)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455556555432344555566688999999999999888899999999999998888888887666555533
No 52
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=65.01 E-value=60 Score=24.77 Aligned_cols=68 Identities=15% Similarity=0.249 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhh
Q 027314 140 KTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIF 218 (225)
Q Consensus 140 ~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~ 218 (225)
+.++-+++..++.+++.| +.+... +.+.++++.....+......+ ++-++.++.++..++..++..+.
T Consensus 31 i~~ld~~~r~l~~~~e~l----r~~rN~---~sk~I~~~~~~~~~~~~l~~e----~~~lk~~i~~le~~~~~~e~~l~ 98 (108)
T PF02403_consen 31 IIELDQERRELQQELEEL----RAERNE---LSKEIGKLKKAGEDAEELKAE----VKELKEEIKELEEQLKELEEELN 98 (108)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHH---HHHHHHHHCHTTCCTHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHhH---HHHHHHHHhhCcccHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555 444444 466677777543333333332 44555555555555555554443
No 53
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.90 E-value=83 Score=29.09 Aligned_cols=27 Identities=4% Similarity=0.126 Sum_probs=11.7
Q ss_pred HHHHHHHhHHHHHhhHHHHHHHHHhHH
Q 027314 188 QMENWKTNLAVMASKERQYLQQYNNYK 214 (225)
Q Consensus 188 q~~ew~r~~k~L~~K~~Ey~~r~~~~~ 214 (225)
++.+-..+++-+..++.+..++|..-+
T Consensus 74 ~i~~~~~eik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 74 EIDQSKAEIKKLQKEIAELKENIVERQ 100 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444433
No 54
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=64.68 E-value=62 Score=28.11 Aligned_cols=57 Identities=9% Similarity=0.182 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHH
Q 027314 145 EKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKV 215 (225)
Q Consensus 145 ~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~ 215 (225)
....|+...++.-+.-++.+|.. |.+.+ .++++-+++.|.|+.|......++..++.
T Consensus 109 ~tf~rL~~~Vd~~~~eL~~eI~~---L~~~i-----------~~le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 109 STFARLCQQVDQTKNELEDEIKQ---LEKEI-----------QRLEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHH---HHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455444444444444 23333 34446677788888888888888888775
No 55
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=64.37 E-value=6 Score=37.44 Aligned_cols=59 Identities=17% Similarity=0.215 Sum_probs=0.0
Q ss_pred hhHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCChhHHHHHHHHHHHH
Q 027314 58 LSQAKTKAANIVAADFRQKAAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVA 116 (225)
Q Consensus 58 ~NeaaDee~~Ll~~d~~qk~~Ey~aea~~l~elLe~vgls~~sLs~~G~~aL~aLa~~A 116 (225)
+|.-.-||+--||=.+.+-+..-.++-..+++-|..+.-+.++|...-......+.++.
T Consensus 4 Lsp~QRREVV~LILslTss~s~s~GDLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLs 62 (326)
T PF04582_consen 4 LSPSQRREVVGLILSLTSSISTSPGDLSPIRERLSALESSVASLSDSVSSLSSTISDLS 62 (326)
T ss_dssp -----------------------------------------------------------
T ss_pred CCHHHHHHHHHhhhcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555554455544444444445566555665556666665555555555544
No 56
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=64.36 E-value=1.5e+02 Score=28.99 Aligned_cols=174 Identities=12% Similarity=0.174 Sum_probs=82.1
Q ss_pred HHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHh----HHH--HHHHHHHhccccccCCChhHHHHHHHHHHHHHHhCCCC
Q 027314 50 AHLYNLATLSQAKTKAANIVAADFRQKAAEYRS----QAA--RIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRD 123 (225)
Q Consensus 50 ~~L~~LA~~NeaaDee~~Ll~~d~~qk~~Ey~a----ea~--~l~elLe~vgls~~sLs~~G~~aL~aLa~~A~~L~~~d 123 (225)
..+-.|-..-+..+.+..-..+..++.+..|.+ ++. --.+++..+|-.+......-...-..+=..|..+....
T Consensus 264 ~~~~~lr~~~E~~~~ec~~~ve~~k~~L~~~~~~~~eea~~lv~~~~~plv~~~q~~~e~~le~l~~~~E~~a~~~~~~~ 343 (473)
T PF14643_consen 264 QCMEKLRALYEKICQECLALVEKLKQELLDWKACTEEEAEELVNPEFLPLVGELQSEFEEELEKLDKSFEELAKQTEAQS 343 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555666666777777777662 111 11222334433333333333333344445555666556
Q ss_pred CChhhHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhcCc--CchHHHHHHHHHhHHHH
Q 027314 124 TELSSFLVAMGDISLR-KTAVEEKRAKVQKESKILLDYTRKAIAR-LTYLKRTLGQLEDDV--APCEAQMENWKTNLAVM 199 (225)
Q Consensus 124 ts~~sl~~ai~dLt~~-~~~~e~~~~r~~~e~~~L~~~l~k~l~~-~~~Lk~~L~~Le~~~--a~l~~q~~ew~r~~k~L 199 (225)
.++.+|+..+..+=-. ...+..+...++.++++.-...+.+... ...|...+.+|...+ +.|..-+..=..-++-+
T Consensus 344 ~~L~~f~~~~~~lwd~h~~~l~~~e~~l~~~l~~~r~~~~~~~q~~E~~Ld~~~d~lRq~s~ee~L~~~l~~~~~~Ld~I 423 (473)
T PF14643_consen 344 EDLFKFFQEAAQLWDEHRKKLSKQEEELEKRLEQCREKHDQENQEKEAKLDIALDRLRQASSEEKLKEHLEKALDLLDQI 423 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 6677777777665321 1223333444444555544444443332 223444445555442 22333333333334444
Q ss_pred HhhHHHHHHH---------------HHhHHHHhhhhhcc
Q 027314 200 ASKERQYLQQ---------------YNNYKVSIFCYHYV 223 (225)
Q Consensus 200 ~~K~~Ey~~r---------------~~~~~~~~~~~~~~ 223 (225)
+..-+.|..+ +.+|...||+|-.|
T Consensus 424 e~~Y~~fh~~~~~~~~~yP~~i~~e~~~Y~~~l~~~f~v 462 (473)
T PF14643_consen 424 EEEYEDFHKKQTAIVMEYPEMILKELESYSESLCQFFGV 462 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4444444443 36677777776543
No 57
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=62.95 E-value=87 Score=25.90 Aligned_cols=28 Identities=11% Similarity=0.393 Sum_probs=13.7
Q ss_pred HHHHHHHhHHHHHhhHHHHHHHHHhHHH
Q 027314 188 QMENWKTNLAVMASKERQYLQQYNNYKV 215 (225)
Q Consensus 188 q~~ew~r~~k~L~~K~~Ey~~r~~~~~~ 215 (225)
+....-|.++.|.....++..++..+..
T Consensus 109 ~ae~~eRkv~~le~~~~~~E~k~eel~~ 136 (143)
T PF12718_consen 109 KAEHFERKVKALEQERDQWEEKYEELEE 136 (143)
T ss_pred HhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3344445555555555555555544443
No 58
>PRK10884 SH3 domain-containing protein; Provisional
Probab=62.59 E-value=91 Score=27.47 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=7.8
Q ss_pred HHHHHhhhcCcCchHHHHH
Q 027314 172 KRTLGQLEDDVAPCEAQME 190 (225)
Q Consensus 172 k~~L~~Le~~~a~l~~q~~ 190 (225)
+++|.+++.+...++++..
T Consensus 145 ~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 145 KNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444333333333
No 59
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=62.52 E-value=1.2e+02 Score=27.23 Aligned_cols=58 Identities=14% Similarity=0.121 Sum_probs=33.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-----cCchHH
Q 027314 130 LVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDD-----VAPCEA 187 (225)
Q Consensus 130 ~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~-----~a~l~~ 187 (225)
+.+|-.|-....+.|........++......-..++..-...++.+.+|=.. |.|++.
T Consensus 31 Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs~~DleR 93 (207)
T PF05546_consen 31 YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSWSPADLER 93 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHH
Confidence 3445555555555565555555556555555555666655556666666444 555554
No 60
>PRK03918 chromosome segregation protein; Provisional
Probab=62.43 E-value=1.1e+02 Score=31.39 Aligned_cols=14 Identities=14% Similarity=0.420 Sum_probs=9.1
Q ss_pred HHHHHHHHHHhhcc
Q 027314 20 RIADVKAWLASQFE 33 (225)
Q Consensus 20 ~~s~V~sWL~~kF~ 33 (225)
..+.|..|+...++
T Consensus 109 ~~~~~~~~i~~~~~ 122 (880)
T PRK03918 109 GDSSVREWVERLIP 122 (880)
T ss_pred cHHHHHHHHHHhcC
Confidence 44567778777554
No 61
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=62.07 E-value=69 Score=28.37 Aligned_cols=17 Identities=29% Similarity=0.597 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027314 151 QKESKILLDYTRKAIAR 167 (225)
Q Consensus 151 ~~e~~~L~~~l~k~l~~ 167 (225)
..+.+.|++|-+.++..
T Consensus 134 k~e~EqLL~YK~~ql~~ 150 (195)
T PF12761_consen 134 KREFEQLLDYKERQLRE 150 (195)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44555555555555544
No 62
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=61.87 E-value=92 Score=28.34 Aligned_cols=43 Identities=12% Similarity=0.164 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCCChhhHHHHHHHhhhhHHHHHHH
Q 027314 104 NVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEK 146 (225)
Q Consensus 104 ~G~~aL~aLa~~A~~L~~~dts~~sl~~ai~dLt~~~~~~e~~ 146 (225)
-|..+++++..+|-.-.......-.||.+|..+...--.+|.+
T Consensus 44 A~~~f~Da~qKvad~A~~s~GaSkElG~~Ltri~~~hr~iE~~ 86 (231)
T cd07643 44 ATSAFLDAFQKIADAATNTRGATKEIGSALTRMCMRHKSIETK 86 (231)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 4556777776666333222222446777777654443333333
No 63
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=61.56 E-value=73 Score=30.63 Aligned_cols=38 Identities=8% Similarity=0.083 Sum_probs=29.4
Q ss_pred CchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhhhh
Q 027314 183 APCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIFCY 220 (225)
Q Consensus 183 a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~~~ 220 (225)
+....+...-.+..+.+..++.++.+++..++..+.+.
T Consensus 371 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 371 PEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44456666667777888888899999998888888775
No 64
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=60.67 E-value=98 Score=25.77 Aligned_cols=28 Identities=11% Similarity=0.172 Sum_probs=11.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 027314 130 LVAMGDISLRKTAVEEKRAKVQKESKIL 157 (225)
Q Consensus 130 ~~ai~dLt~~~~~~e~~~~r~~~e~~~L 157 (225)
...+..+..++-+.++.....+.++..+
T Consensus 87 ~~~l~~l~~el~~l~~~~~~~~~~l~~~ 114 (191)
T PF04156_consen 87 QQQLQQLQEELDQLQERIQELESELEKL 114 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444333333333
No 65
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=60.45 E-value=27 Score=30.87 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=12.0
Q ss_pred CCChhhHHHHHHHhhhhHHHHHHHHH
Q 027314 123 DTELSSFLVAMGDISLRKTAVEEKRA 148 (225)
Q Consensus 123 dts~~sl~~ai~dLt~~~~~~e~~~~ 148 (225)
.++..+.-..+.|+..++...+.+..
T Consensus 124 ~~~~~DvT~~y~D~~arl~~l~~~~~ 149 (262)
T PF14257_consen 124 NISSEDVTEQYVDLEARLKNLEAEEE 149 (262)
T ss_pred eccccchHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555444444444
No 66
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=59.57 E-value=66 Score=32.83 Aligned_cols=59 Identities=12% Similarity=0.155 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhhhhhc
Q 027314 161 TRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIFCYHY 222 (225)
Q Consensus 161 l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~~~~~ 222 (225)
|++..++ |+.++.+++.-+.....++..|...+..|++-+.+=...+..++.+..+.|+
T Consensus 264 lre~~~~---L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~ 322 (581)
T KOG0995|consen 264 LREKKAR---LQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKK 322 (581)
T ss_pred HHHHHHH---HHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555 5777777776678888999999999999999999988899888888777665
No 67
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.50 E-value=1e+02 Score=27.70 Aligned_cols=72 Identities=22% Similarity=0.279 Sum_probs=49.2
Q ss_pred ChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHH
Q 027314 125 ELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKER 204 (225)
Q Consensus 125 s~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~ 204 (225)
.+-|+--++-.+-.+-.-++.+.++++.+ |.. ++.+|.+...- |+|..--+|-+++|+.| +
T Consensus 13 p~psL~dai~~v~~r~dSve~KIskLDae-----------L~k---~~~Qi~k~R~g----paq~~~KqrAlrVLkQK-K 73 (218)
T KOG1655|consen 13 PPPSLQDAIDSVNKRSDSVEKKISKLDAE-----------LCK---YKDQIKKTRPG----PAQNALKQRALRVLKQK-K 73 (218)
T ss_pred CChhHHHHHHHHHHhhhhHHHHHHHHHHH-----------HHH---HHHHHHhcCCC----cchhHHHHHHHHHHHHH-H
Confidence 44566667777777777777777654444 444 47777776533 57778888889999987 6
Q ss_pred HHHHHHHhHHH
Q 027314 205 QYLQQYNNYKV 215 (225)
Q Consensus 205 Ey~~r~~~~~~ 215 (225)
.|.+|..+|..
T Consensus 74 ~yE~q~d~L~~ 84 (218)
T KOG1655|consen 74 MYENQKDSLDQ 84 (218)
T ss_pred HHHHHHHHHHH
Confidence 78887766653
No 68
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=59.34 E-value=3.5e+02 Score=31.73 Aligned_cols=37 Identities=5% Similarity=0.091 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHh
Q 027314 46 SRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRS 82 (225)
Q Consensus 46 ~dTl~~L~~LA~~NeaaDee~~Ll~~d~~qk~~Ey~a 82 (225)
.+......+...+|..++.|..-+.+++++.......
T Consensus 1142 ee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~ 1178 (1930)
T KOG0161|consen 1142 EEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEA 1178 (1930)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3456677788889999999999999888877665553
No 69
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=59.32 E-value=1.3e+02 Score=26.84 Aligned_cols=82 Identities=21% Similarity=0.233 Sum_probs=51.7
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhh
Q 027314 135 DISLRKTAVEEKRAKVQKESKILLDYTRKAI------------ARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASK 202 (225)
Q Consensus 135 dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l------------~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K 202 (225)
.+-..--.++.+..+++.+.+.++.+.+.++ .+...|..++.-++........+...-.+++.-|..|
T Consensus 49 ~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~K 128 (225)
T COG1842 49 QAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQK 128 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444455555555555555554433 3344456666666666667777788888888888888
Q ss_pred HHHHHHHHHhHHHH
Q 027314 203 ERQYLQQYNNYKVS 216 (225)
Q Consensus 203 ~~Ey~~r~~~~~~~ 216 (225)
+.|++.+...++..
T Consensus 129 i~e~~~~~~~l~ar 142 (225)
T COG1842 129 IAELRAKKEALKAR 142 (225)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888777654
No 70
>PHA02562 46 endonuclease subunit; Provisional
Probab=59.16 E-value=1.7e+02 Score=28.16 Aligned_cols=14 Identities=7% Similarity=0.240 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhhcc
Q 027314 20 RIADVKAWLASQFE 33 (225)
Q Consensus 20 ~~s~V~sWL~~kF~ 33 (225)
+...+..|+...||
T Consensus 111 ~~~~~~~~i~~~~g 124 (562)
T PHA02562 111 SSKDFQKYFEQMLG 124 (562)
T ss_pred cHHHHHHHHHHHHC
Confidence 34578888888776
No 71
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=57.88 E-value=86 Score=30.79 Aligned_cols=64 Identities=16% Similarity=0.084 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHH-HHHHhHHHHHhhHHHHHHHHHhH
Q 027314 147 RAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQME-NWKTNLAVMASKERQYLQQYNNY 213 (225)
Q Consensus 147 ~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~-ew~r~~k~L~~K~~Ey~~r~~~~ 213 (225)
..++|.++..-...|..+..+ |+..-++.+.+|.+...++. .++--++.+.+|+.|++.+++..
T Consensus 4 ~~elq~e~~~~E~qL~~a~qk---l~da~~~~e~dpD~~nk~~~~~R~~~v~~~~~Ki~elkr~lAd~ 68 (428)
T PF00846_consen 4 LEELQEEITQHEQQLVIARQK---LKDAEKQYEKDPDDVNKSTLQQRQSVVSALQDKIAELKRQLADR 68 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666676666677777777 58888888989888775554 44556789999999999998753
No 72
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=57.68 E-value=1.3e+02 Score=26.31 Aligned_cols=90 Identities=13% Similarity=0.171 Sum_probs=57.1
Q ss_pred CCChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc--------Cc-hHHHHHHHH
Q 027314 123 DTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDV--------AP-CEAQMENWK 193 (225)
Q Consensus 123 dts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~--------a~-l~~q~~ew~ 193 (225)
..++..+-..|......+.+........+.++-.+..-.......++..+..+.++.... ++ -+++..-+.
T Consensus 77 ~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ 156 (240)
T PF12795_consen 77 NLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQ 156 (240)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHH
Confidence 446666777777777777777777776666666666666666666655666665555441 12 246666666
Q ss_pred HhHHHHHhhHHHHHHHHHh
Q 027314 194 TNLAVMASKERQYLQQYNN 212 (225)
Q Consensus 194 r~~k~L~~K~~Ey~~r~~~ 212 (225)
....++.++...++.-+.+
T Consensus 157 ae~~~l~~~~~~le~el~s 175 (240)
T PF12795_consen 157 AELAALEAQIEMLEQELLS 175 (240)
T ss_pred HHHHHHHHHHHHHHHHHHC
Confidence 6677777777766655543
No 73
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=57.45 E-value=1.3e+02 Score=25.98 Aligned_cols=85 Identities=18% Similarity=0.341 Sum_probs=59.7
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC----cCchHHHHHHHHHhHHHH----Hhh
Q 027314 131 VAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDD----VAPCEAQMENWKTNLAVM----ASK 202 (225)
Q Consensus 131 ~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~----~a~l~~q~~ew~r~~k~L----~~K 202 (225)
.|+.-..+..-++|.+..++..++++.+..+..+--+|..+++.|+-+-+- ++.+..+.+.-.|.+|-| .-|
T Consensus 31 sals~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKK 110 (159)
T PF04949_consen 31 SALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKK 110 (159)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 344455566677777777777788888888888877877778888776543 355555666655666555 468
Q ss_pred HHHHHHHHHhHHH
Q 027314 203 ERQYLQQYNNYKV 215 (225)
Q Consensus 203 ~~Ey~~r~~~~~~ 215 (225)
..||.+=+.+|.-
T Consensus 111 EkEykealea~nE 123 (159)
T PF04949_consen 111 EKEYKEALEAFNE 123 (159)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988877753
No 74
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=57.23 E-value=1.3e+02 Score=31.09 Aligned_cols=86 Identities=9% Similarity=0.212 Sum_probs=43.2
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcC---chHHHHHHHHHhHHHHHhhH
Q 027314 127 SSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVA---PCEAQMENWKTNLAVMASKE 203 (225)
Q Consensus 127 ~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a---~l~~q~~ew~r~~k~L~~K~ 203 (225)
.++...+..+......++..++.++.+++.| ++++.. |+..|+++..... -.........+...-|.-|+
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~----k~eie~---L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L 490 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEEL----KREIEK---LESELERFRREVRDKVRKDREIRARDRRIERLEKEL 490 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555444444444 233333 5666666554421 11123333444556666666
Q ss_pred HHHHHHHHhHHHHhhh
Q 027314 204 RQYLQQYNNYKVSIFC 219 (225)
Q Consensus 204 ~Ey~~r~~~~~~~~~~ 219 (225)
.|=..++..|+..|++
T Consensus 491 ~e~~~~ve~L~~~l~~ 506 (652)
T COG2433 491 EEKKKRVEELERKLAE 506 (652)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666666654
No 75
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=56.80 E-value=1.2e+02 Score=25.59 Aligned_cols=30 Identities=23% Similarity=0.312 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027314 139 RKTAVEEKRAKVQKESKILLDYTRKAIARL 168 (225)
Q Consensus 139 ~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~ 168 (225)
+...+...+.+++.+++.|...++.++..+
T Consensus 74 ~~~~lr~~~e~L~~eie~l~~~L~~ei~~l 103 (177)
T PF07798_consen 74 EFAELRSENEKLQREIEKLRQELREEINKL 103 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556777788888888888888888774
No 76
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=56.58 E-value=2.7e+02 Score=29.51 Aligned_cols=57 Identities=23% Similarity=0.320 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCc--------------CchHHHHHHHHHhHHHHHhhHHHHHHHHHh
Q 027314 156 ILLDYTRKAIARLTYLKRTLGQLEDDV--------------APCEAQMENWKTNLAVMASKERQYLQQYNN 212 (225)
Q Consensus 156 ~L~~~l~k~l~~~~~Lk~~L~~Le~~~--------------a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~ 212 (225)
+++.-++..=..+..|.+.|.+|+++. ..+..++....-..++|++|......+++-
T Consensus 228 alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~r 298 (775)
T PF10174_consen 228 ALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSR 298 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344444444344444555555555541 222346777778888888888777776643
No 77
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=56.57 E-value=1.1e+02 Score=28.33 Aligned_cols=138 Identities=16% Similarity=0.182 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHhCC
Q 027314 46 SRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYR----SQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNI 121 (225)
Q Consensus 46 ~dTl~~L~~LA~~NeaaDee~~Ll~~d~~qk~~Ey~----aea~~l~elLe~vgls~~sLs~~G~~aL~aLa~~A~~L~~ 121 (225)
|+-.+-|..|...-..-=..-..+.++....+..+. .++.-+.||.+.||. -+.-+.+....+-.
T Consensus 53 pe~sr~L~~LIk~EK~vi~s~e~~are~~~~A~~L~~WG~~edddl~DIsDklgv-----------Ll~e~ge~e~~~a~ 121 (271)
T PF13805_consen 53 PELSRKLQRLIKAEKSVIRSLESAARERKAAAKQLSEWGEQEDDDLSDISDKLGV-----------LLYEIGELEDQYAD 121 (271)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHH-----------HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 455577777776655444444444444433333332 234556666666642 22223333322222
Q ss_pred CCCChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHh
Q 027314 122 RDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTN 195 (225)
Q Consensus 122 ~dts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~ 195 (225)
..-.--.-..+|-+.-..+......+.++.-++..|.. -+-.-.++..|+..|..++.+.-..++|..+-+|.
T Consensus 122 ~~d~yR~~LK~IR~~E~sl~p~R~~r~~l~d~I~kLk~-k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~ 194 (271)
T PF13805_consen 122 RLDQYRIHLKSIRNREESLQPSRDRRRKLQDEIAKLKY-KDPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQ 194 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Confidence 22222234456666666666666777777777776632 23333355557788877776656666777776665
No 78
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=55.55 E-value=16 Score=34.59 Aligned_cols=54 Identities=11% Similarity=0.274 Sum_probs=24.2
Q ss_pred HHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhhh--hhccCC
Q 027314 172 KRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIFC--YHYVGI 225 (225)
Q Consensus 172 k~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~~--~~~~~~ 225 (225)
...+.+++...+.++..+.+..+.++.+...+....+++..++....| .|.+||
T Consensus 143 ~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnNiRIiGi 198 (370)
T PF02994_consen 143 NSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNNIRIIGI 198 (370)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES-
T ss_pred HHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCceeEEec
Confidence 344444444444444444444444444444444444455544444433 344443
No 79
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=55.44 E-value=1.5e+02 Score=30.36 Aligned_cols=47 Identities=17% Similarity=0.357 Sum_probs=30.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 027314 135 DISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDD 181 (225)
Q Consensus 135 dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~ 181 (225)
.|..+.+-..++...|--++.+|...-+..+.+...|.+.|.+|+..
T Consensus 19 ~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q 65 (617)
T PF15070_consen 19 QLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQ 65 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555566666666667777777677777777777777776654
No 80
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=55.33 E-value=1.4e+02 Score=25.88 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhccccccCCChhHHHHHHHHHHHHHH-hCCCCCChhhHHHHHHHhhhhHHHHHHHH
Q 027314 69 VAADFRQKAAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANL-LNIRDTELSSFLVAMGDISLRKTAVEEKR 147 (225)
Q Consensus 69 l~~d~~qk~~Ey~aea~~l~elLe~vgls~~sLs~~G~~aL~aLa~~A~~-L~~~dts~~sl~~ai~dLt~~~~~~e~~~ 147 (225)
|.++++-...++-..+...+..|..+ +..|..++++|..++-. .+++. ...+|.++..++..--.++..+
T Consensus 4 i~~~~~P~~e~lv~~~~kY~~al~~~-------~~a~~~f~dal~ki~~~A~~s~~--s~~lG~~L~~~s~~~r~i~~~~ 74 (219)
T PF08397_consen 4 IMEDFNPAWENLVSLGKKYQKALRAM-------SQAAAAFFDALQKIGDMASNSRG--SKELGDALMQISEVHRRIENEL 74 (219)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHTSSS--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhccCCCc--cccHHHHHHHHHHHHHHHHHHH
Confidence 44455544444545555555555544 44577788888777743 33333 5678877777766555555443
No 81
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=55.10 E-value=3.2e+02 Score=29.94 Aligned_cols=35 Identities=23% Similarity=0.425 Sum_probs=18.9
Q ss_pred CchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHh
Q 027314 183 APCEAQMENWKTNLAVMASKERQYLQQYNNYKVSI 217 (225)
Q Consensus 183 a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~ 217 (225)
+....+..++....+.|.+|..+...++...+..|
T Consensus 355 ~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l 389 (1201)
T PF12128_consen 355 PEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKL 389 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555666666666555555554443
No 82
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=54.93 E-value=30 Score=33.90 Aligned_cols=39 Identities=18% Similarity=0.367 Sum_probs=28.5
Q ss_pred HHHHHHHHHHh-------hcccCCCCCCCCCCCHHHHHHHHHHHHhh
Q 027314 20 RIADVKAWLAS-------QFEASAKEVPAFEYTSRSVAHLYNLATLS 59 (225)
Q Consensus 20 ~~s~V~sWL~~-------kF~~~~~pVP~FErN~dTl~~L~~LA~~N 59 (225)
...|++.|.+. .|++ +..-|.||.+|.+.++|--+..+-
T Consensus 68 a~~yl~~W~~~~~GwL~r~~~~-~~~e~~y~lT~~a~~Al~~l~~L~ 113 (478)
T PF11855_consen 68 ARAYLRDWVRADKGWLRRRYDE-GSDEEHYELTPAAEKALRFLERLE 113 (478)
T ss_pred HHHHHHHHHHHhhhHHHhccCC-CCCCeeEEeCHHHHHHHHHHHHcC
Confidence 34577666664 4543 555799999999999998887773
No 83
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=54.47 E-value=98 Score=23.82 Aligned_cols=62 Identities=15% Similarity=0.232 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhh
Q 027314 157 LLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIF 218 (225)
Q Consensus 157 L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~ 218 (225)
|..++..++-.++-|+-.+++|+..-..+.....+-.-+...|..+-.+.++.-.+++..|+
T Consensus 9 LE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444545555788888888665555555555455556677777777777777776654
No 84
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=54.46 E-value=2.3e+02 Score=28.20 Aligned_cols=26 Identities=15% Similarity=0.129 Sum_probs=12.6
Q ss_pred HHhhHHHHHHHHHhHHHHhhhhhccC
Q 027314 199 MASKERQYLQQYNNYKVSIFCYHYVG 224 (225)
Q Consensus 199 L~~K~~Ey~~r~~~~~~~~~~~~~~~ 224 (225)
...|+.+|+..+..+++.+.+-|--|
T Consensus 416 Ar~kL~~~~~~L~~ikr~l~k~~lpg 441 (569)
T PRK04778 416 AREKLERYRNKLHEIKRYLEKSNLPG 441 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444455555555555554444443
No 85
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=53.98 E-value=55 Score=29.53 Aligned_cols=45 Identities=18% Similarity=0.304 Sum_probs=37.1
Q ss_pred HHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhH
Q 027314 169 TYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNY 213 (225)
Q Consensus 169 ~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~ 213 (225)
..|..+|+.|+.++..|.+++++....+.-|..+-+++-.+|...
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346888888888888889999999999999988888877776653
No 86
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.97 E-value=1.2e+02 Score=32.51 Aligned_cols=89 Identities=10% Similarity=0.151 Sum_probs=62.8
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHH
Q 027314 127 SSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQY 206 (225)
Q Consensus 127 ~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey 206 (225)
.+|.--|..+..++..+.|+..+|+.+.+.|...+...+.....|++++.-|+.+.........+...+..+.+.+-+|.
T Consensus 660 ~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel 739 (970)
T KOG0946|consen 660 QKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEEL 739 (970)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHH
Confidence 44667788888999999999999999999999999988888888888888888775433334444444455555554444
Q ss_pred HHHHHhHHH
Q 027314 207 LQQYNNYKV 215 (225)
Q Consensus 207 ~~r~~~~~~ 215 (225)
.-....+++
T Consensus 740 ~a~~~e~k~ 748 (970)
T KOG0946|consen 740 NAALSENKK 748 (970)
T ss_pred HHHHHHHHH
Confidence 444444433
No 87
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=53.88 E-value=76 Score=29.43 Aligned_cols=58 Identities=10% Similarity=0.181 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHH
Q 027314 151 QKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQ 208 (225)
Q Consensus 151 ~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~ 208 (225)
..+++.++.-+.+.-..+..++..+.+.+...+.+.-+-.....++.++++|++.|+.
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~ 263 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHG 263 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445555555555555555555555555555555555556667788999999998854
No 88
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=53.84 E-value=3.6e+02 Score=30.13 Aligned_cols=87 Identities=13% Similarity=0.057 Sum_probs=46.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc--------CchHHHHHHHHHhHHHHHhhHH
Q 027314 133 MGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDV--------APCEAQMENWKTNLAVMASKER 204 (225)
Q Consensus 133 i~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~--------a~l~~q~~ew~r~~k~L~~K~~ 204 (225)
+..+..+....+....+.+.++..+...++.--...+.+++.+..|+.++ ..+..+..++.....-...+.+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~~~~~~~~ 357 (1353)
T TIGR02680 278 YDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAADARQAIR 357 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444677777777664 2233455555555666666666
Q ss_pred HHHHHHHhHHHHhhh
Q 027314 205 QYLQQYNNYKVSIFC 219 (225)
Q Consensus 205 Ey~~r~~~~~~~~~~ 219 (225)
++++++...+..+.+
T Consensus 358 ~a~~~~e~~~~~~~~ 372 (1353)
T TIGR02680 358 EAESRLEEERRRLDE 372 (1353)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666655555443
No 89
>PRK11281 hypothetical protein; Provisional
Probab=53.79 E-value=3.4e+02 Score=29.92 Aligned_cols=88 Identities=13% Similarity=0.049 Sum_probs=48.5
Q ss_pred CCChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc--------CchHHHHHHHHH
Q 027314 123 DTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDV--------APCEAQMENWKT 194 (225)
Q Consensus 123 dts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~--------a~l~~q~~ew~r 194 (225)
..++..+-..+.++..++.+.+......+.++-.++...+++.++++.-++.+.+..... +--+++-..++.
T Consensus 120 ~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~a 199 (1113)
T PRK11281 120 TLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQA 199 (1113)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHH
Confidence 334455555556666666666666666666666666655555555555555554444321 122355556666
Q ss_pred hHHHHHhhHHHHHHHH
Q 027314 195 NLAVMASKERQYLQQY 210 (225)
Q Consensus 195 ~~k~L~~K~~Ey~~r~ 210 (225)
....+.++.+-.++.+
T Consensus 200 e~~~l~~~~~~~~~~l 215 (1113)
T PRK11281 200 EQALLNAQNDLQRKSL 215 (1113)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666655444443
No 90
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=53.68 E-value=1.1e+02 Score=25.06 Aligned_cols=27 Identities=26% Similarity=0.186 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027314 153 ESKILLDYTRKAIARLTYLKRTLGQLE 179 (225)
Q Consensus 153 e~~~L~~~l~k~l~~~~~Lk~~L~~Le 179 (225)
.++.|+.+++++-+.+..-.+.|.+|+
T Consensus 42 ~l~lLq~e~~~~e~~le~d~~~L~~Le 68 (160)
T PF13094_consen 42 QLELLQEEIEKEEAALERDYEYLQELE 68 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555544444444444555555
No 91
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.55 E-value=1.2e+02 Score=30.29 Aligned_cols=93 Identities=11% Similarity=0.192 Sum_probs=63.7
Q ss_pred hhHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHH
Q 027314 127 SSFLVAMGD-ISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQ 205 (225)
Q Consensus 127 ~sl~~ai~d-Lt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~E 205 (225)
.+|-|-|.. |.-+.....+-..++++|++.|..-+.+..-. ..|...+++.+.+...+..-+......+.-|+.|..+
T Consensus 95 ~~ye~q~~~~leqertq~qq~~e~~erEv~~l~~llsr~~~~-~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~ 173 (542)
T KOG0993|consen 95 PTYECQMCQNLEQERTQLQQNEEKLEREVKALMELLSRGQYQ-LDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAK 173 (542)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh-hhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 346666665 77777777777888888888886655551111 1246666666666555556666666677788999999
Q ss_pred HHHHHHhHHHHhhhh
Q 027314 206 YLQQYNNYKVSIFCY 220 (225)
Q Consensus 206 y~~r~~~~~~~~~~~ 220 (225)
-.++|..+.+-.+.|
T Consensus 174 aE~~i~El~k~~~h~ 188 (542)
T KOG0993|consen 174 AEQRIDELSKAKHHK 188 (542)
T ss_pred HHHHHHHHHhhhccc
Confidence 999998888666654
No 92
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
Probab=53.03 E-value=54 Score=29.21 Aligned_cols=57 Identities=7% Similarity=0.149 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCCCCCHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHH
Q 027314 18 AARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAA 78 (225)
Q Consensus 18 ~~~~s~V~sWL~~kF~~~~~pVP~FErN~dTl~~L~~LA~~NeaaDee~~Ll~~d~~qk~~ 78 (225)
..+...|-.||...|+ .|.|.++++ +..+.|.+..-.-++.|+-++.+...+.++..
T Consensus 3 ~~~~~~i~~~l~~~~p---~~~~~l~~~-~pf~lLva~iLSaqttD~~vn~at~~Lf~~~~ 59 (211)
T COG0177 3 KKKALEILDRLRELYP---EPKTELDFK-DPFELLVAVILSAQTTDEVVNKATPALFKRYP 59 (211)
T ss_pred HhhHHHHHHHHHHHCC---CCCCccCcC-CcHHHHHHHHHhccCchHHHHHHHHHHHHHcC
Confidence 4577889999999996 666666633 66888999888899999999988877665433
No 93
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=53.01 E-value=1.5e+02 Score=30.16 Aligned_cols=9 Identities=0% Similarity=0.025 Sum_probs=3.3
Q ss_pred HHHHhhhhH
Q 027314 132 AMGDISLRK 140 (225)
Q Consensus 132 ai~dLt~~~ 140 (225)
.+..|..++
T Consensus 172 ~v~~l~~eL 180 (546)
T PF07888_consen 172 EVERLEAEL 180 (546)
T ss_pred HHHHHHHHH
Confidence 333333333
No 94
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=52.99 E-value=3.5e+02 Score=29.78 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=18.1
Q ss_pred HHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHH
Q 027314 172 KRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQY 210 (225)
Q Consensus 172 k~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~ 210 (225)
.+.|+....+...+..+-+...|.+..+.+++.++++|+
T Consensus 402 ~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQV 440 (1243)
T KOG0971|consen 402 QKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQV 440 (1243)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444555555555554444
No 95
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=52.40 E-value=1.2e+02 Score=24.08 Aligned_cols=11 Identities=36% Similarity=0.622 Sum_probs=6.1
Q ss_pred HHHHHHhhhcC
Q 027314 171 LKRTLGQLEDD 181 (225)
Q Consensus 171 Lk~~L~~Le~~ 181 (225)
++..|++|+..
T Consensus 60 ik~~lk~l~~~ 70 (151)
T cd00179 60 IKGKLKELEES 70 (151)
T ss_pred HHHHHHHHHHH
Confidence 45566665543
No 96
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=52.23 E-value=2.6e+02 Score=27.99 Aligned_cols=54 Identities=11% Similarity=0.186 Sum_probs=32.5
Q ss_pred HHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhhhhhccCC
Q 027314 172 KRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIFCYHYVGI 225 (225)
Q Consensus 172 k~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~~~~~~~~ 225 (225)
.+.|.+++...........+....=+--+.|+..|...+.+.++.+.+.|..||
T Consensus 385 ~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGl 438 (560)
T PF06160_consen 385 EEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGL 438 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 333333333333333333444444455566778888888888888888888886
No 97
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=52.09 E-value=89 Score=22.64 Aligned_cols=11 Identities=18% Similarity=0.443 Sum_probs=3.0
Q ss_pred hHHHHHhhHHH
Q 027314 195 NLAVMASKERQ 205 (225)
Q Consensus 195 ~~k~L~~K~~E 205 (225)
.++.|..|+++
T Consensus 40 ~l~~L~~rl~~ 50 (69)
T PF04102_consen 40 QLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHT---
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 98
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=51.92 E-value=2.1e+02 Score=26.80 Aligned_cols=36 Identities=6% Similarity=0.155 Sum_probs=23.3
Q ss_pred CchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhh
Q 027314 183 APCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIF 218 (225)
Q Consensus 183 a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~ 218 (225)
..++.++.+-.-.+.-...|..|++.+|+..++.++
T Consensus 228 ~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~ 263 (312)
T smart00787 228 EELEEELQELESKIEDLTNKKSELNTEIAEAEKKLE 263 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555566677777777888877777664
No 99
>COG1229 FwdA Formylmethanofuran dehydrogenase subunit A [Energy production and conversion]
Probab=51.66 E-value=26 Score=34.93 Aligned_cols=44 Identities=27% Similarity=0.422 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHHHhhcc----------------------cCCCCCCCCCCCHHHHHHHHHHHHhhHh
Q 027314 16 RDAARIADVKAWLASQFE----------------------ASAKEVPAFEYTSRSVAHLYNLATLSQA 61 (225)
Q Consensus 16 ~~~~~~s~V~sWL~~kF~----------------------~~~~pVP~FErN~dTl~~L~~LA~~Nea 61 (225)
.|-+|.+---+||-+.-- ..+.|||-|+.+|+ +++-.||++||.
T Consensus 162 gd~ek~aAyvAW~lkatkgygiKiVNPgG~eaWgwG~NV~sLddpvp~FdiTP~--EIi~glaevnE~ 227 (575)
T COG1229 162 GDMEKAAAYVAWLLKATKGYGIKIVNPGGVEAWGWGKNVHSLDDPVPYFDITPR--EIIKGLAEVNER 227 (575)
T ss_pred CCHHHHHHHHHHHHHhcccceEEEECCCCcccccccCCcccccCCCCCcccCHH--HHHHHHHHHHHh
Confidence 466888888899876421 11389999999998 578899999984
No 100
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=50.51 E-value=3.1e+02 Score=28.45 Aligned_cols=180 Identities=14% Similarity=0.152 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCHHHHHHHHH-----------HHHhhHhhhHHHHHHHHH--HHHHHHHHHhHHHHHHH----HHHhcccc
Q 027314 35 SAKEVPAFEYTSRSVAHLYN-----------LATLSQAKTKAANIVAAD--FRQKAAEYRSQAARIRE----ILENVGLA 97 (225)
Q Consensus 35 ~~~pVP~FErN~dTl~~L~~-----------LA~~NeaaDee~~Ll~~d--~~qk~~Ey~aea~~l~e----lLe~vgls 97 (225)
+|.|+|.+.-=..-+.-+-. |-..|...-.....-... +++++.+|...-...-+ +.+.-+
T Consensus 99 aPDP~pll~sa~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~-- 176 (629)
T KOG0963|consen 99 APDPVPLLASAAELLNKQQKASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKL-- 176 (629)
T ss_pred CCCCchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred ccCCChhHHHHHHHHHHHHHHhCCCCCChhhHHHHHHHhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027314 98 QESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEK----RAKVQKESKILLDYTRKAIARLTYLKR 173 (225)
Q Consensus 98 ~~sLs~~G~~aL~aLa~~A~~L~~~dts~~sl~~ai~dLt~~~~~~e~~----~~r~~~e~~~L~~~l~k~l~~~~~Lk~ 173 (225)
+.+.-..-....+..-+++-.++..+-...++..++-+...++|+.+.+ ..-...++......+..+-.++..|++
T Consensus 177 ~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~ 256 (629)
T KOG0963|consen 177 EQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLER 256 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhcC-----cCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHH
Q 027314 174 TLGQLEDD-----VAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVS 216 (225)
Q Consensus 174 ~L~~Le~~-----~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~ 216 (225)
..+.|..+ -+.-.++..+--.+--+|..|.++..+=...+++.
T Consensus 257 e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~ 304 (629)
T KOG0963|consen 257 EVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERL 304 (629)
T ss_pred HHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHH
No 101
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=50.20 E-value=2.2e+02 Score=26.61 Aligned_cols=7 Identities=43% Similarity=0.729 Sum_probs=3.0
Q ss_pred CCCCCCC
Q 027314 38 EVPAFEY 44 (225)
Q Consensus 38 pVP~FEr 44 (225)
.||..|.
T Consensus 61 ~iP~LEl 67 (312)
T smart00787 61 TVPLLEL 67 (312)
T ss_pred CCcHHHH
Confidence 3454443
No 102
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=49.98 E-value=1.2e+02 Score=30.84 Aligned_cols=13 Identities=8% Similarity=0.227 Sum_probs=5.4
Q ss_pred HHHHhhhhHHHHH
Q 027314 132 AMGDISLRKTAVE 144 (225)
Q Consensus 132 ai~dLt~~~~~~e 144 (225)
.+.+|-.++.+++
T Consensus 289 ~i~~L~~~l~~l~ 301 (754)
T TIGR01005 289 LIQRLRERQAELR 301 (754)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 103
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=49.80 E-value=2.3e+02 Score=26.81 Aligned_cols=89 Identities=12% Similarity=0.242 Sum_probs=54.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcC---------------------chHHHH--
Q 027314 133 MGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVA---------------------PCEAQM-- 189 (225)
Q Consensus 133 i~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a---------------------~l~~q~-- 189 (225)
+-.++.++..+..+..+++.-.+.=+..+.+-+.+-.++.+.|.+|+.+-. +.+.+.
T Consensus 181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d 260 (305)
T PF14915_consen 181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQD 260 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334556666666666666666666666677777777777777777776622 222222
Q ss_pred ------HHHHHhHHHHHhhHHHHHHHHHhHHHHhhhhh
Q 027314 190 ------ENWKTNLAVMASKERQYLQQYNNYKVSIFCYH 221 (225)
Q Consensus 190 ------~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~~~~ 221 (225)
++-....-+|.-|-.|..+.+.-++..+|.|-
T Consensus 261 ~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~qyE 298 (305)
T PF14915_consen 261 IVKKLQAESEKQVLLLEERNKELINECNHLKERLYQYE 298 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 22222233466667777777777777777773
No 104
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=49.37 E-value=1.4e+02 Score=24.16 Aligned_cols=11 Identities=27% Similarity=0.265 Sum_probs=7.7
Q ss_pred HHHHHHHHHhh
Q 027314 21 IADVKAWLASQ 31 (225)
Q Consensus 21 ~s~V~sWL~~k 31 (225)
+.||+.=|.+.
T Consensus 4 ~~yiN~~L~s~ 14 (151)
T PF11559_consen 4 IEYINQQLLSR 14 (151)
T ss_pred HHHHHHHHHHC
Confidence 56888877654
No 105
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=48.96 E-value=2e+02 Score=25.83 Aligned_cols=49 Identities=18% Similarity=0.116 Sum_probs=36.0
Q ss_pred HHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhhhhh
Q 027314 170 YLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIFCYH 221 (225)
Q Consensus 170 ~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~~~~ 221 (225)
.|++.+++.+ ...+..++.+.+.+.-+-+++.||...+..|=..--.||
T Consensus 162 ~l~eE~e~ae---~k~e~~~e~~~~~M~~~l~~E~e~~~~l~~lv~aQl~YH 210 (244)
T cd07595 162 ALKDEYEEAE---LKLEQCRDALATDMYEFLAKEAEIASYLIDLIEAQREYH 210 (244)
T ss_pred hHHHHHHHHH---HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHH
Confidence 4566666666 445566778888888888888888888887776666676
No 106
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=48.93 E-value=1.9e+02 Score=26.83 Aligned_cols=26 Identities=8% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhc
Q 027314 69 VAADFRQKAAEYRSQAARIREILENV 94 (225)
Q Consensus 69 l~~d~~qk~~Ey~aea~~l~elLe~v 94 (225)
+.+.++.+......|-......|..+
T Consensus 10 l~~~l~~~~~~~~~E~~~Y~~fL~~l 35 (314)
T PF04111_consen 10 LLEQLDKQLEQAEKERDTYQEFLKKL 35 (314)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444455555555
No 107
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=48.53 E-value=1.7e+02 Score=25.00 Aligned_cols=71 Identities=14% Similarity=0.154 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHH-HHHHHhHHHHHhhHHHHHHHHHhHHHH
Q 027314 140 KTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQM-ENWKTNLAVMASKERQYLQQYNNYKVS 216 (225)
Q Consensus 140 ~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~-~ew~r~~k~L~~K~~Ey~~r~~~~~~~ 216 (225)
+-.+=..|...+...+.+.++|.+.-.. |+..++++++.....-..+ .+| -.|=..|..++.+-+.+|...
T Consensus 111 vk~~l~~R~~~q~~~e~~~e~L~~k~~~---l~~ev~~a~~~~e~~~~~~~~E~---~rF~~~K~~d~k~~l~~~a~~ 182 (200)
T cd07624 111 VKDVLKRRDQFQIEYELSVEELNKKRLE---LLKEVEKLQDKLECANADLKADL---ERWKQNKRQDLKKILLDMAEK 182 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3334456666777889999998888876 5777777665432222222 222 235556777777777665543
No 108
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=47.74 E-value=1.8e+02 Score=24.89 Aligned_cols=48 Identities=23% Similarity=0.276 Sum_probs=32.3
Q ss_pred HHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhh
Q 027314 171 LKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIF 218 (225)
Q Consensus 171 Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~ 218 (225)
+...+..++........+.......+.-|..|+.+++.+...+....+
T Consensus 96 ~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~ 143 (221)
T PF04012_consen 96 LEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAREN 143 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555666556666677777777777777777777777766665443
No 109
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=47.45 E-value=1.9e+02 Score=25.19 Aligned_cols=49 Identities=10% Similarity=0.123 Sum_probs=25.1
Q ss_pred HHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHH----hHHHHhhhhh
Q 027314 171 LKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYN----NYKVSIFCYH 221 (225)
Q Consensus 171 Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~----~~~~~~~~~~ 221 (225)
.+..+++|+... -+.++.+-...+.-...|..+.+.++. +.+.=|.|||
T Consensus 135 kr~~~~Kl~~~~--~~~K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~ 187 (224)
T cd07623 135 KREAKAKLELSG--RTDKLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFE 187 (224)
T ss_pred HHHHHHHHHhcC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666665332 123555555555555555555555553 3334455555
No 110
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=47.16 E-value=27 Score=26.19 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=20.1
Q ss_pred HHHHHhhHHHHHHHHHhHHHHhh
Q 027314 196 LAVMASKERQYLQQYNNYKVSIF 218 (225)
Q Consensus 196 ~k~L~~K~~Ey~~r~~~~~~~~~ 218 (225)
.+++..|+.||.+|...++..|.
T Consensus 50 k~~ir~K~~eYl~RAE~Lk~~l~ 72 (76)
T cd02681 50 LKTIQEKSNEYLDRAQALHQLVQ 72 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45669999999999999999875
No 111
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=46.84 E-value=1.6e+02 Score=23.92 Aligned_cols=28 Identities=14% Similarity=0.126 Sum_probs=11.8
Q ss_pred CchHHHHHHHHHhHHHHHhhHHHHHHHH
Q 027314 183 APCEAQMENWKTNLAVMASKERQYLQQY 210 (225)
Q Consensus 183 a~l~~q~~ew~r~~k~L~~K~~Ey~~r~ 210 (225)
..+.+|......-+.=|.+|+.+-+..+
T Consensus 47 ~~L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 47 QSLQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444433
No 112
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=46.81 E-value=1.2e+02 Score=26.76 Aligned_cols=88 Identities=16% Similarity=0.225 Sum_probs=54.7
Q ss_pred CCCChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHH-
Q 027314 122 RDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMA- 200 (225)
Q Consensus 122 ~dts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~- 200 (225)
.|-++.-+.--+..|+..+..+.+.-+-|+.|++-|.+.|. +..+++.+.+|+.+++.-.....+..-++.+..
T Consensus 77 ~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt-----~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtp 151 (201)
T KOG4603|consen 77 SDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALT-----TEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTP 151 (201)
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence 45567777788888898888888888888889988876654 234566666666554444444444333333322
Q ss_pred ----hhHHHHHHHHHhHH
Q 027314 201 ----SKERQYLQQYNNYK 214 (225)
Q Consensus 201 ----~K~~Ey~~r~~~~~ 214 (225)
.=.++|.+-++-+.
T Consensus 152 edk~~v~~~y~~~~~~wr 169 (201)
T KOG4603|consen 152 EDKEQVYREYQKYCKEWR 169 (201)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 22345555554443
No 113
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=46.61 E-value=59 Score=26.97 Aligned_cols=11 Identities=9% Similarity=0.226 Sum_probs=5.7
Q ss_pred HHHHHHHhhcc
Q 027314 23 DVKAWLASQFE 33 (225)
Q Consensus 23 ~V~sWL~~kF~ 33 (225)
-|-.||.+.+.
T Consensus 5 ~Il~y~~~qNR 15 (169)
T PF07106_consen 5 AILEYMKEQNR 15 (169)
T ss_pred HHHHHHHHcCC
Confidence 45555555543
No 114
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=46.55 E-value=3.4e+02 Score=27.72 Aligned_cols=84 Identities=13% Similarity=0.167 Sum_probs=41.3
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHH
Q 027314 131 VAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQY 210 (225)
Q Consensus 131 ~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~ 210 (225)
..|-+-..+...++....++.-+++.|...+.++......-++.+......++.++++..--++..+.|.......+.+.
T Consensus 99 ~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en 178 (546)
T KOG0977|consen 99 KLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAEN 178 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444455555555555555555555555554433333444444444455555555555555555555555444444
Q ss_pred HhHH
Q 027314 211 NNYK 214 (225)
Q Consensus 211 ~~~~ 214 (225)
.-+.
T Consensus 179 ~rl~ 182 (546)
T KOG0977|consen 179 SRLR 182 (546)
T ss_pred hhhH
Confidence 4333
No 115
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=46.24 E-value=2.2e+02 Score=25.54 Aligned_cols=100 Identities=8% Similarity=0.057 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhCC-----CCCChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 027314 107 SSAQVLANVANLLNI-----RDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDD 181 (225)
Q Consensus 107 ~aL~aLa~~A~~L~~-----~dts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~ 181 (225)
.++..|+++...+|- .+.+...|+-.+-+.....+.+++.... +...++.+...+... ..-+.+.++++.-
T Consensus 76 ~a~~kLg~v~~~v~dl~~~QA~~d~~tl~d~L~~~~~~~~~vKealtn---R~~~~re~~qAq~~~-~~K~~~~~rlk~s 151 (230)
T cd07625 76 NLYEKFGKVLTAVGDIDSIQATVDMATLYDGLEWISRDAYVVKEALTN---RHLLMRELIQAQQNT-KSKQEAARRLKAK 151 (230)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-HHHHHHHHHHhcC
Confidence 356666655554442 2446778999999999999998877665 455555444443332 2336666777654
Q ss_pred cCchHHHHHHHHHhHHHHHhhHHHHHHHH
Q 027314 182 VAPCEAQMENWKTNLAVMASKERQYLQQY 210 (225)
Q Consensus 182 ~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~ 210 (225)
+.--|.|+++=.+.++--..++.+...++
T Consensus 152 ~~i~~~KvdeA~~~l~eA~~~e~~l~~k~ 180 (230)
T cd07625 152 RDINPLKVDEAIRQLEEATKHEHDLSLKL 180 (230)
T ss_pred CCCChHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555555554444444444444
No 116
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=46.12 E-value=2.2e+02 Score=25.38 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=24.8
Q ss_pred HHHHHHHHh----HHHHHhhHHHHHHHHHhHHHH
Q 027314 187 AQMENWKTN----LAVMASKERQYLQQYNNYKVS 216 (225)
Q Consensus 187 ~q~~ew~r~----~k~L~~K~~Ey~~r~~~~~~~ 216 (225)
.--.+|+|- ..+|...+..|++++..++..
T Consensus 90 klarEWQrFGryta~vmr~eV~~Y~~KL~eLE~k 123 (195)
T PF10226_consen 90 KLAREWQRFGRYTASVMRQEVAQYQQKLKELEDK 123 (195)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446789985 788999999999999988544
No 117
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=45.93 E-value=2.7e+02 Score=26.48 Aligned_cols=16 Identities=19% Similarity=0.119 Sum_probs=14.0
Q ss_pred HhhHHHHHHHHHhHHH
Q 027314 200 ASKERQYLQQYNNYKV 215 (225)
Q Consensus 200 ~~K~~Ey~~r~~~~~~ 215 (225)
++|+|+++++|++.+.
T Consensus 193 K~KIR~lq~~L~~~~~ 208 (342)
T PF06632_consen 193 KAKIRELQRLLASAKE 208 (342)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc
Confidence 6899999999988875
No 118
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=45.56 E-value=2.4e+02 Score=25.69 Aligned_cols=85 Identities=13% Similarity=0.287 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--cCchHHHHHHHHHhHHHHHhhH
Q 027314 126 LSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDD--VAPCEAQMENWKTNLAVMASKE 203 (225)
Q Consensus 126 ~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~--~a~l~~q~~ew~r~~k~L~~K~ 203 (225)
.+.+-.++.++..+.-+++.+..+.+.++..+ ++.+.+ .+..|....+. ...|..-+..|.+...-|...+
T Consensus 40 ~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~----r~r~~~---~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el 112 (239)
T COG1579 40 LEALNKALEALEIELEDLENQVSQLESEIQEI----RERIKR---AEEKLSAVKDERELRALNIEIQIAKERINSLEDEL 112 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---HHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHHHHh
Q 027314 204 RQYLQQYNNYKVSI 217 (225)
Q Consensus 204 ~Ey~~r~~~~~~~~ 217 (225)
.+..+++..++..+
T Consensus 113 ~~l~~~~~~l~~~i 126 (239)
T COG1579 113 AELMEEIEKLEKEI 126 (239)
T ss_pred HHHHHHHHHHHHHH
No 119
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=45.30 E-value=5.1e+02 Score=29.48 Aligned_cols=71 Identities=14% Similarity=0.064 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHH
Q 027314 145 EKRAKVQKESKILLDYTRKAIARLT-------YLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKV 215 (225)
Q Consensus 145 ~~~~r~~~e~~~L~~~l~k~l~~~~-------~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~ 215 (225)
++-.+++...+.|++|+++.-..++ .-++.-++|+++.++|-.|+-+....+|=|.-+-..-.++|..+++
T Consensus 1654 ~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~a 1731 (1758)
T KOG0994|consen 1654 EQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAA 1731 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3444555666677777665444421 1255567777777777777766666666666544444444444433
No 120
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=45.17 E-value=2.1e+02 Score=31.13 Aligned_cols=81 Identities=12% Similarity=0.084 Sum_probs=54.6
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHh------
Q 027314 128 SFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMAS------ 201 (225)
Q Consensus 128 sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~------ 201 (225)
..-.-|--|+....++|.+...+|.-+..+++.++..-..++.+...|++++++ +-++..+-++..+-|+.
T Consensus 103 ~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~e---LsAk~~eIf~~~~~L~nk~~~lt 179 (1265)
T KOG0976|consen 103 HHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDE---LSAKAHDIFMIGEDLHDKNEELN 179 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HhhhhHHHHHHHHHHhhhhhHHh
Confidence 344556666777777777777777777888888887777777778888888744 45566666665555554
Q ss_pred -hHHHHHHHHH
Q 027314 202 -KERQYLQQYN 211 (225)
Q Consensus 202 -K~~Ey~~r~~ 211 (225)
+..||...++
T Consensus 180 ~~~~q~~tkl~ 190 (1265)
T KOG0976|consen 180 EFNMEFQTKLA 190 (1265)
T ss_pred HHHHHHHHHHH
Confidence 4555555553
No 121
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=44.89 E-value=2.3e+02 Score=27.42 Aligned_cols=21 Identities=0% Similarity=0.104 Sum_probs=9.0
Q ss_pred HHHHHhhHHHHHHHHHhHHHH
Q 027314 196 LAVMASKERQYLQQYNNYKVS 216 (225)
Q Consensus 196 ~k~L~~K~~Ey~~r~~~~~~~ 216 (225)
.+-++.++.+...++..++..
T Consensus 75 ~~~l~~~~~~~~~~~~~~~~~ 95 (425)
T PRK05431 75 VKELKEEIKALEAELDELEAE 95 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 122
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=44.66 E-value=1.6e+02 Score=23.57 Aligned_cols=104 Identities=9% Similarity=0.077 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCc
Q 027314 105 VVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAP 184 (225)
Q Consensus 105 G~~aL~aLa~~A~~L~~~dts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~ 184 (225)
...+.+.|... .+-.+++..++...+..|+-.+.+++..... .+..=+.-|=........++..+..++
T Consensus 10 ~~~fan~ll~~---~~~~~~~~ld~~~~l~kL~~~i~eld~~i~~---~v~~~~~~LL~q~~~~~~~~~~l~~v~----- 78 (132)
T PF10392_consen 10 PVQFANDLLKS---TNNNSDSELDISTPLKKLNFDIQELDKRIRS---QVTSNHEDLLSQASSIEELESVLQAVR----- 78 (132)
T ss_pred HHHHHHHHHHh---hcCCCCCcccHHHHHHHHHHHHHHHHHHHHH---HHHhCHHHHHHHHHhHHHHHHHHHHHH-----
Confidence 34455555552 2344556666777777777666666655432 333333333333344333444444444
Q ss_pred hHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhhhhh
Q 027314 185 CEAQMENWKTNLAVMASKERQYLQQYNNYKVSIFCYH 221 (225)
Q Consensus 185 l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~~~~ 221 (225)
.++..-....+=|+.++-+=-+++......|.|.|
T Consensus 79 --~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~ 113 (132)
T PF10392_consen 79 --SSVESLQSSYERLRSEVIEPYEKIQKLTSQLERLH 113 (132)
T ss_pred --HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 66777777788888888888888888888887776
No 123
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=44.47 E-value=53 Score=23.85 Aligned_cols=47 Identities=21% Similarity=0.179 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcC
Q 027314 137 SLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVA 183 (225)
Q Consensus 137 t~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a 183 (225)
..++.++|.+..-.+.-++.|-+-+.+.-..+..|++.|..|.....
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555544445555555554444444445666666655433
No 124
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=44.38 E-value=3.6e+02 Score=27.47 Aligned_cols=7 Identities=0% Similarity=0.159 Sum_probs=3.0
Q ss_pred HHHhhcc
Q 027314 27 WLASQFE 33 (225)
Q Consensus 27 WL~~kF~ 33 (225)
.|.+...
T Consensus 141 ~l~~~L~ 147 (754)
T TIGR01005 141 KMREKLN 147 (754)
T ss_pred HHHhcce
Confidence 3444443
No 125
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=44.35 E-value=2.8e+02 Score=26.13 Aligned_cols=103 Identities=6% Similarity=0.042 Sum_probs=61.8
Q ss_pred HhCCCCCChh---hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHH
Q 027314 118 LLNIRDTELS---SFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKT 194 (225)
Q Consensus 118 ~L~~~dts~~---sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r 194 (225)
...|..++|. -|+.-|.+|...+...+.+.. ...++..|..-...--.....++..+.+|-++...+--+|..-.+
T Consensus 122 ~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~e-~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~ 200 (294)
T COG1340 122 KQQTSVLTPEEERELVQKIKELRKELEDAKKALE-ENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFE 200 (294)
T ss_pred HHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555554 388888888888777664442 233444444444333333344566666666555556667777777
Q ss_pred hHHHHHhhHHHHHHHHHhHHHHhhhhh
Q 027314 195 NLAVMASKERQYLQQYNNYKVSIFCYH 221 (225)
Q Consensus 195 ~~k~L~~K~~Ey~~r~~~~~~~~~~~~ 221 (225)
..+=+.-+..+|+..+-.+...+..-|
T Consensus 201 ~~De~Rkeade~he~~ve~~~~~~e~~ 227 (294)
T COG1340 201 EADELRKEADELHEEFVELSKKIDELH 227 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 777777777777777766666655544
No 126
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=44.33 E-value=34 Score=25.25 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=22.4
Q ss_pred HHHHHhhHHHHHHHHHhHHHHhhhhh
Q 027314 196 LAVMASKERQYLQQYNNYKVSIFCYH 221 (225)
Q Consensus 196 ~k~L~~K~~Ey~~r~~~~~~~~~~~~ 221 (225)
.+.+..|..||.+|...++..|..-|
T Consensus 49 k~~lr~k~~eyl~RAE~LK~~l~~~~ 74 (75)
T cd02684 49 KEALRQKVLQYVSRAEELKALIASDT 74 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 56799999999999999999887544
No 127
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.16 E-value=4.4e+02 Score=29.11 Aligned_cols=27 Identities=7% Similarity=0.107 Sum_probs=9.7
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 027314 131 VAMGDISLRKTAVEEKRAKVQKESKIL 157 (225)
Q Consensus 131 ~ai~dLt~~~~~~e~~~~r~~~e~~~L 157 (225)
+.+..|..++.++.....+++.+++-|
T Consensus 888 ~~L~el~~el~~l~~~~~~~~~~~~~~ 914 (1311)
T TIGR00606 888 EQLVELSTEVQSLIREIKDAKEQDSPL 914 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333333333333333333333333333
No 128
>PLN02678 seryl-tRNA synthetase
Probab=44.13 E-value=2.3e+02 Score=27.91 Aligned_cols=26 Identities=8% Similarity=0.130 Sum_probs=12.6
Q ss_pred HHHHHHHHhHHHHHhhHHHHHHHHHh
Q 027314 187 AQMENWKTNLAVMASKERQYLQQYNN 212 (225)
Q Consensus 187 ~q~~ew~r~~k~L~~K~~Ey~~r~~~ 212 (225)
+++.+....++-|..+..++.+++..
T Consensus 78 ~~~~~Lk~ei~~le~~~~~~~~~l~~ 103 (448)
T PLN02678 78 AETKELKKEITEKEAEVQEAKAALDA 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555555555443
No 129
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=44.11 E-value=2.6e+02 Score=28.46 Aligned_cols=14 Identities=7% Similarity=0.138 Sum_probs=5.7
Q ss_pred HHhhHHHHHHHHHh
Q 027314 199 MASKERQYLQQYNN 212 (225)
Q Consensus 199 L~~K~~Ey~~r~~~ 212 (225)
+..++.++.+.+.+
T Consensus 218 ~~~ri~~LEedi~~ 231 (546)
T PF07888_consen 218 ARQRIRELEEDIKT 231 (546)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 130
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=44.06 E-value=2.9e+02 Score=26.34 Aligned_cols=90 Identities=17% Similarity=0.135 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHhCCCCCChhhHHHHHHHhhhhHHHHHHHHHHH
Q 027314 71 ADFRQKAAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKV 150 (225)
Q Consensus 71 ~d~~qk~~Ey~aea~~l~elLe~vgls~~sLs~~G~~aL~aLa~~A~~L~~~dts~~sl~~ai~dLt~~~~~~e~~~~r~ 150 (225)
++++.|+.|.+-+...++++-++--....+ ..-..+.-.-.+.-|+..+.+++++..++
T Consensus 136 EAFKRKllE~kYD~~mL~qLr~g~~~~~~~---------------------~~~~~~~~~D~v~LLqkk~~~l~~~l~~~ 194 (323)
T PF08537_consen 136 EAFKRKLLEKKYDKRMLEQLRRGRSKNRHN---------------------RPRNPSSNSDRVILLQKKIDELEERLNDL 194 (323)
T ss_pred HHHHHHHHHHHhHHHHHHHHhcCCCCCCcc---------------------cccCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 668888888887777788876643111111 00111112277888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 027314 151 QKESKILLDYTRKAIARLTYLKRTLGQLEDD 181 (225)
Q Consensus 151 ~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~ 181 (225)
+.+++.+++.|.=+..+..-|+..|.+...+
T Consensus 195 ~~eL~~~~k~L~faqekn~LlqslLddaniD 225 (323)
T PF08537_consen 195 EKELEITKKDLKFAQEKNALLQSLLDDANID 225 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 9999999999887777765577777777655
No 131
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=43.28 E-value=1.4e+02 Score=25.42 Aligned_cols=9 Identities=0% Similarity=0.003 Sum_probs=0.0
Q ss_pred HHHHhhhhH
Q 027314 132 AMGDISLRK 140 (225)
Q Consensus 132 ai~dLt~~~ 140 (225)
.|++++.++
T Consensus 96 ~L~~~~~~l 104 (194)
T PF08614_consen 96 QLVELNDEL 104 (194)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 333333333
No 132
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=43.18 E-value=1.9e+02 Score=23.79 Aligned_cols=24 Identities=13% Similarity=0.308 Sum_probs=15.8
Q ss_pred HHHHHhHHHHHhhHHHHHHHHHhH
Q 027314 190 ENWKTNLAVMASKERQYLQQYNNY 213 (225)
Q Consensus 190 ~ew~r~~k~L~~K~~Ey~~r~~~~ 213 (225)
.+..==+.-+..|...|+.|+..+
T Consensus 87 dDLL~ll~Dle~K~~kyk~rLk~L 110 (136)
T PF04871_consen 87 DDLLVLLGDLEEKRKKYKERLKEL 110 (136)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHc
Confidence 333334556778888888888654
No 133
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=43.17 E-value=1.4e+02 Score=29.93 Aligned_cols=43 Identities=19% Similarity=0.317 Sum_probs=33.7
Q ss_pred HHhCCC-CC---ChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 027314 117 NLLNIR-DT---ELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLD 159 (225)
Q Consensus 117 ~~L~~~-dt---s~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~ 159 (225)
..||+- || .+..+...+-.+..++..+..++.++..|.+.|++
T Consensus 48 kalGiegDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 48 KALGIEGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467763 44 56678888888999999999888888888888755
No 134
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=42.94 E-value=2.1e+02 Score=24.21 Aligned_cols=81 Identities=17% Similarity=0.093 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHhH---HHH-HHHH--HHhccccccCCChhHHHHHHHHHHHHHHhCC----CCCChhhHHHHH
Q 027314 64 KAANIVAADFRQKAAEYRSQ---AAR-IREI--LENVGLAQESLPSNVVSSAQVLANVANLLNI----RDTELSSFLVAM 133 (225)
Q Consensus 64 ee~~Ll~~d~~qk~~Ey~ae---a~~-l~el--Le~vgls~~sLs~~G~~aL~aLa~~A~~L~~----~dts~~sl~~ai 133 (225)
+-+..|++|++.|+...... +.. .+.+ ..... ...++|+-+...|..|-.=|..+.- -..++.+..+.|
T Consensus 4 ~~~~FVa~dLe~kIr~s~~~~~~~s~~~~~~~~~~~~~-~~~~~P~id~~~L~~LE~~a~~ia~svd~ll~~L~~~L~~m 82 (149)
T PF10157_consen 4 DMTHFVAEDLEEKIRLSSSPSSSPSSSSSPSSLTPRQL-PSPSIPPIDPAVLHDLERDAQAIAESVDSLLRSLRSSLHSM 82 (149)
T ss_pred cchhhHHhhHHHHHHhccCCCCCCcCcCCCCCCccccc-cCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999974311 000 1111 11111 1123566567788877655544443 233666677777
Q ss_pred HHhhhhHHHHHH
Q 027314 134 GDISLRKTAVEE 145 (225)
Q Consensus 134 ~dLt~~~~~~e~ 145 (225)
..+|.+-+++=.
T Consensus 83 S~~Tv~~~~~y~ 94 (149)
T PF10157_consen 83 SAITVEHMETYK 94 (149)
T ss_pred HHHHHHHHHHHH
Confidence 777777766543
No 135
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=42.85 E-value=1.9e+02 Score=23.78 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=36.0
Q ss_pred hhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027314 126 LSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQ 177 (225)
Q Consensus 126 ~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~ 177 (225)
+.++...+..|..+...++++-.....+-+..-...+++++.+..++..+.+
T Consensus 22 ~~~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e 73 (126)
T PF09403_consen 22 TASVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEE 73 (126)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 6778889999999998888776666666666666667777765444444433
No 136
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=42.74 E-value=1.7e+02 Score=30.55 Aligned_cols=92 Identities=10% Similarity=0.094 Sum_probs=46.1
Q ss_pred cCCChhHHHHHHHHHHH----------HHHhC--CCCCChhhHHHHHHHhhhhHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 027314 99 ESLPSNVVSSAQVLANV----------ANLLN--IRDTELSSFLVAMGDISLRKTA--VEEKRAKVQKESKILLDYTRKA 164 (225)
Q Consensus 99 ~sLs~~G~~aL~aLa~~----------A~~L~--~~dts~~sl~~ai~dLt~~~~~--~e~~~~r~~~e~~~L~~~l~k~ 164 (225)
.-|++++...|+.+.++ -..++ +...++.+|+..+-.+..+... +.......-..+.++|+..-..
T Consensus 585 ~lL~~~~~~~L~~~~~s~l~~~~~~~~~~~l~~~~t~~dL~~~a~~L~~la~~~~~~~~~~~L~~~a~~l~~~~~~~v~p 664 (806)
T PF05478_consen 585 TLLTPEEKRNLEDLRNSGLSDIDFSLYLEQLCKPLTPVDLPSLANQLEALANSLPNGWLRNALKNEAQNLRAIQKELVSP 664 (806)
T ss_pred cccCHHHHHHHHHHHhCCCccCCHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHhh
Confidence 45889999999999875 12333 3344677777777666655443 2222222222233333321111
Q ss_pred -HHHHHHHHHHHHhhhcCcCchHHHHH
Q 027314 165 -IARLTYLKRTLGQLEDDVAPCEAQME 190 (225)
Q Consensus 165 -l~~~~~Lk~~L~~Le~~~a~l~~q~~ 190 (225)
......|...+.+|+....+++.++.
T Consensus 665 l~~~~~~L~~~l~~L~~~~~~l~~~i~ 691 (806)
T PF05478_consen 665 LEQLVSKLNQSLKKLDSLSSNLQNSIN 691 (806)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 12222345555556555444444433
No 137
>PF11279 DUF3080: Protein of unknown function (DUF3080); InterPro: IPR021431 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently this family has no known function.
Probab=42.47 E-value=2.8e+02 Score=25.70 Aligned_cols=169 Identities=17% Similarity=0.230 Sum_probs=91.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHh---hHhhhHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHhccccccCCC---
Q 027314 36 AKEVPAFEYTSRSVAHLYNLATL---SQAKTKAANIVAADFRQKAAEYRSQ-------AARIREILENVGLAQESLP--- 102 (225)
Q Consensus 36 ~~pVP~FErN~dTl~~L~~LA~~---NeaaDee~~Ll~~d~~qk~~Ey~ae-------a~~l~elLe~vgls~~sLs--- 102 (225)
|+--|+|-|=---++.|..+..| +.--++-+..|.....+|.+.+-.- .+-++..+. ++...|+
T Consensus 69 GKV~~~s~rl~Ye~~fi~~l~~Cl~~~~~~~~l~~~L~~~~~~K~~~Lp~~~~Nal~~s~e~r~~~s---~~~~~l~~~~ 145 (316)
T PF11279_consen 69 GKVQDPSQRLLYEIEFIRGLERCLSSDDDDSELKTKLAQALQQKQQQLPAHFWNALFTSDEMRKQLS---LSSQWLPLDS 145 (316)
T ss_pred ccccCHHHhhhHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhC---cCCCCCCCCC
Confidence 45555555555667788888888 5555566777778888888887631 122333322 2222222
Q ss_pred -hhH---HHHHHHHHHHHHHh--CCCCCChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027314 103 -SNV---VSSAQVLANVANLL--NIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLG 176 (225)
Q Consensus 103 -~~G---~~aL~aLa~~A~~L--~~~dts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~ 176 (225)
... ..+|+.|..+.... +....+..+|...+-.|. +.. -...|..-+......+...-..|+
T Consensus 146 ~~~~~~~~~AL~~l~~~~~~~~~~~~~~~~~~le~~l~~L~-------~~~-----~~g~L~~Sl~~~~~~L~~~t~~L~ 213 (316)
T PF11279_consen 146 NAGFSETLQALSQLNQIKQQILQQNSQIDSDSLEQALEQLE-------KSR-----LGGQLLYSLRLATAWLNQATQQLE 213 (316)
T ss_pred cccHHHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHH-------cCc-----chHHHHHHHHHHHHHHHHHHHHHH
Confidence 233 44555555544432 223334444444333322 222 255666666777777777788888
Q ss_pred hhhcCcCchHHHHHHHHHhHHHHHh-hHHHHHHHHHhHHHHhhhhhc
Q 027314 177 QLEDDVAPCEAQMENWKTNLAVMAS-KERQYLQQYNNYKVSIFCYHY 222 (225)
Q Consensus 177 ~Le~~~a~l~~q~~ew~r~~k~L~~-K~~Ey~~r~~~~~~~~~~~~~ 222 (225)
.. +...-|+..... ++.+.|+. =..-|..+|.-|-+-|++|||
T Consensus 214 ~~-~~~~lC~~~~~~--~~~~~L~NVF~~~yi~~IQpylA~l~~~~~ 257 (316)
T PF11279_consen 214 QR-DNSILCGPGRNT--TKARILRNVFQKYYIEQIQPYLAQLDRYYQ 257 (316)
T ss_pred cc-cCCCCCCCCCCc--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88 555667651111 11222221 123577777777777777776
No 138
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=42.39 E-value=1.1e+02 Score=24.77 Aligned_cols=34 Identities=12% Similarity=0.211 Sum_probs=17.5
Q ss_pred cCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHH
Q 027314 182 VAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVS 216 (225)
Q Consensus 182 ~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~ 216 (225)
.+.+..|+..|.+-++-...++.|. --+.|+..+
T Consensus 63 ~~~l~kqt~qw~~~~~~~~~~LKEi-GDveNWa~~ 96 (121)
T PF06320_consen 63 TAKLAKQTDQWLKLVDSFNDALKEI-GDVENWAEM 96 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHH
Confidence 3444466666666666665555554 333444333
No 139
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=41.95 E-value=2.5e+02 Score=24.88 Aligned_cols=7 Identities=14% Similarity=0.226 Sum_probs=3.1
Q ss_pred CCCCCCC
Q 027314 36 AKEVPAF 42 (225)
Q Consensus 36 ~~pVP~F 42 (225)
|..+|.+
T Consensus 118 g~~ip~~ 124 (291)
T TIGR00996 118 GGVIPLA 124 (291)
T ss_pred cCEeChh
Confidence 3445533
No 140
>PRK04325 hypothetical protein; Provisional
Probab=41.80 E-value=1.4e+02 Score=22.06 Aligned_cols=12 Identities=25% Similarity=0.163 Sum_probs=4.6
Q ss_pred hhhhHHHHHHHH
Q 027314 136 ISLRKTAVEEKR 147 (225)
Q Consensus 136 Lt~~~~~~e~~~ 147 (225)
+..++.++|.+.
T Consensus 7 ~e~Ri~~LE~kl 18 (74)
T PRK04325 7 MEDRITELEIQL 18 (74)
T ss_pred HHHHHHHHHHHH
Confidence 333333444333
No 141
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.46 E-value=5.3e+02 Score=28.51 Aligned_cols=92 Identities=12% Similarity=0.171 Sum_probs=45.8
Q ss_pred hhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhcC-----cCchHHHHHHHHHhHHH
Q 027314 126 LSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKA--IARLTYLKRTLGQLEDD-----VAPCEAQMENWKTNLAV 198 (225)
Q Consensus 126 ~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~--l~~~~~Lk~~L~~Le~~-----~a~l~~q~~ew~r~~k~ 198 (225)
+..+-..+..++.++-.+.+.....+.+-..+.+.++.- ...+..++..+.+|+.+ .+.......+|......
T Consensus 986 ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~ 1065 (1311)
T TIGR00606 986 LEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDL 1065 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 344444455555555555544444444444444433333 33333455555555544 23334444455554444
Q ss_pred HHh-------hHHHHHHHHHhHHHHh
Q 027314 199 MAS-------KERQYLQQYNNYKVSI 217 (225)
Q Consensus 199 L~~-------K~~Ey~~r~~~~~~~~ 217 (225)
|.+ ..+++.++|..++.-|
T Consensus 1066 l~~~~a~l~g~~k~le~qi~~l~~eL 1091 (1311)
T TIGR00606 1066 IKRNHVLALGRQKGYEKEIKHFKKEL 1091 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 3567777777777776
No 142
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=41.32 E-value=2.1e+02 Score=26.39 Aligned_cols=14 Identities=7% Similarity=0.062 Sum_probs=5.2
Q ss_pred hhHHHHHHHHHHHH
Q 027314 138 LRKTAVEEKRAKVQ 151 (225)
Q Consensus 138 ~~~~~~e~~~~r~~ 151 (225)
.++-+++++..+.+
T Consensus 177 ~ql~~~~~~l~~ae 190 (362)
T TIGR01010 177 NEVKEAEQRLNATK 190 (362)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 143
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=41.19 E-value=89 Score=23.85 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=19.4
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027314 131 VAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAI 165 (225)
Q Consensus 131 ~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l 165 (225)
.++.+|..+.-.+++...+++.+.+.|++|+..=+
T Consensus 30 ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm 64 (80)
T PF10224_consen 30 DSLEALSDRVEEVKEENEKLESENEYLQQYIGNLM 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555556666666666666655433
No 144
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=40.73 E-value=6.8e+02 Score=29.56 Aligned_cols=110 Identities=18% Similarity=0.185 Sum_probs=44.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHhCCCCCChhhHHHHHHHhhhhH
Q 027314 61 AKTKAANIVAADFRQKAAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRK 140 (225)
Q Consensus 61 aaDee~~Ll~~d~~qk~~Ey~aea~~l~elLe~vgls~~sLs~~G~~aL~aLa~~A~~L~~~dts~~sl~~ai~dLt~~~ 140 (225)
++++|..-.....+.++...+++-..++.-++++.-..- .....++-+++--..+....+++. ..=..|..++
T Consensus 1653 ~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr----~aE~e~~E~~e~i~~~~~~~s~l~---~~KrklE~~i 1725 (1930)
T KOG0161|consen 1653 RAREELLEQLAEAERRLAALQAELEELREKLEALERARR----QAELELEELAERVNELNAQNSSLT---AEKRKLEAEI 1725 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHhhcccchh---hHHHHHHHHH
Confidence 333333333344444555555554555555544421111 122233333333333333323222 2223344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027314 141 TAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQ 177 (225)
Q Consensus 141 ~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~ 177 (225)
..++....+...+.....+..+|+++-...+.+.|+.
T Consensus 1726 ~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~ 1762 (1930)
T KOG0161|consen 1726 AQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRK 1762 (1930)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHH
Confidence 4444444444444444545445544444334444333
No 145
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=40.29 E-value=3.6e+02 Score=30.63 Aligned_cols=54 Identities=13% Similarity=0.123 Sum_probs=31.6
Q ss_pred hHHHHHHHhhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 027314 128 SFLVAMGDISLRKTAVEEKRA-------KVQKESKILLDYTRKAIARLTYLKRTLGQLEDD 181 (225)
Q Consensus 128 sl~~ai~dLt~~~~~~e~~~~-------r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~ 181 (225)
++-.-|..++..+.++|+... -..++++-|+...++=.....+|++++.+++..
T Consensus 1236 ~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~s 1296 (1758)
T KOG0994|consen 1236 SLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIKES 1296 (1758)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344445555555555554443 222456666666666666666778888888754
No 146
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=39.97 E-value=2.8e+02 Score=27.09 Aligned_cols=24 Identities=13% Similarity=0.311 Sum_probs=11.9
Q ss_pred HHHHHHhHHHHHhhHHHHHHHHHh
Q 027314 189 MENWKTNLAVMASKERQYLQQYNN 212 (225)
Q Consensus 189 ~~ew~r~~k~L~~K~~Ey~~r~~~ 212 (225)
..+|..-+.++.....++..++..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~ 149 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDRE 149 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555554444444433
No 147
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=39.53 E-value=1.1e+02 Score=27.07 Aligned_cols=15 Identities=13% Similarity=0.045 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHhC
Q 027314 106 VSSAQVLANVANLLN 120 (225)
Q Consensus 106 ~~aL~aLa~~A~~L~ 120 (225)
+.-+..+|.....|+
T Consensus 71 r~DiarvA~lvinlE 85 (189)
T TIGR02132 71 KEDIANVASLVINLE 85 (189)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444443333
No 148
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=39.31 E-value=1.6e+02 Score=21.83 Aligned_cols=40 Identities=5% Similarity=0.090 Sum_probs=23.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027314 129 FLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARL 168 (225)
Q Consensus 129 l~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~ 168 (225)
+++.+..+...+-++.....+++.++..+.+.++.-+...
T Consensus 17 l~~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~ 56 (90)
T PF06103_consen 17 LIKVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNT 56 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666655555444443
No 149
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=38.94 E-value=50 Score=23.26 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=17.6
Q ss_pred HHhhHHHHHHHHHhHHHHh
Q 027314 199 MASKERQYLQQYNNYKVSI 217 (225)
Q Consensus 199 L~~K~~Ey~~r~~~~~~~~ 217 (225)
|..|..+|.+|+..++.+|
T Consensus 51 l~~k~~~yl~RAE~lk~~L 69 (69)
T PF04212_consen 51 LRQKMKEYLERAEKLKEYL 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 9999999999999998876
No 150
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=38.88 E-value=1.3e+02 Score=26.09 Aligned_cols=55 Identities=15% Similarity=0.236 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhhcCcCchHHHHHHHHHhHH---HHHhhHHHHHHHHHhHH----HHhhhhhc
Q 027314 168 LTYLKRTLGQLEDDVAPCEAQMENWKTNLA---VMASKERQYLQQYNNYK----VSIFCYHY 222 (225)
Q Consensus 168 ~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k---~L~~K~~Ey~~r~~~~~----~~~~~~~~ 222 (225)
..+|.+-|.+++.++..+..++.++.+... -++++..+...++.+++ .+..||..
T Consensus 57 N~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~k 118 (201)
T PF13851_consen 57 NKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEK 118 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344789999999888899988888876554 45667777777777665 45555543
No 151
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=38.62 E-value=2.6e+02 Score=24.15 Aligned_cols=37 Identities=8% Similarity=0.065 Sum_probs=21.5
Q ss_pred CchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhhh
Q 027314 183 APCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIFC 219 (225)
Q Consensus 183 a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~~ 219 (225)
..+..++........-|..+...|.+-+..+-.+++|
T Consensus 114 ~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~R 150 (161)
T TIGR02894 114 ESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDR 150 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555666666666666666666665
No 152
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=38.59 E-value=2.3e+02 Score=24.09 Aligned_cols=91 Identities=18% Similarity=0.123 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHhCCCCCChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCch
Q 027314 106 VSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPC 185 (225)
Q Consensus 106 ~~aL~aLa~~A~~L~~~dts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l 185 (225)
..|-+.|++.+ ...+...|-..|.+|..+...-++....+-.++..+...+.+.... |+..-.++.
T Consensus 90 ~syY~~L~~~i-----d~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~---l~~~~~~l~------ 155 (184)
T PF05791_consen 90 QSYYDTLVEAI-----DQKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRN---LKTDVDELQ------ 155 (184)
T ss_dssp HHHHHHHHHHH-----HHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH------
T ss_pred HHHHHHHHHHH-----CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHH------
Confidence 44555565555 4456666777777777666666666665555555555555555544 233333332
Q ss_pred HHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhh
Q 027314 186 EAQMENWKTNLAVMASKERQYLQQYNNYKVSIF 218 (225)
Q Consensus 186 ~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~ 218 (225)
.-++--...+++.+.+|.++...+.
T Consensus 156 --------~~l~~~~g~I~~L~~~I~~~~~~I~ 180 (184)
T PF05791_consen 156 --------SILAGENGDIPQLQKQIENLNEEIK 180 (184)
T ss_dssp --------HHHHHTT--HHHHHHHHHHHTGGG-
T ss_pred --------HHHhcccCCHHHHHHHHHHHHHHHH
Confidence 2233334455566666666655544
No 153
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=38.47 E-value=2.7e+02 Score=24.24 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=18.5
Q ss_pred HHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHH
Q 027314 172 KRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYK 214 (225)
Q Consensus 172 k~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~ 214 (225)
+..|.+|+.+.+.+..++..--..+.-|++....+.+.+.+.+
T Consensus 137 e~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 137 EMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443333333333333344444444444555444443
No 154
>PRK03918 chromosome segregation protein; Provisional
Probab=38.33 E-value=4.6e+02 Score=26.92 Aligned_cols=34 Identities=12% Similarity=0.243 Sum_probs=13.0
Q ss_pred HHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHH
Q 027314 172 KRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQ 205 (225)
Q Consensus 172 k~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~E 205 (225)
+..+..++..-..+.....+|...++-+..+..+
T Consensus 244 ~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~ 277 (880)
T PRK03918 244 EKELESLEGSKRKLEEKIRELEERIEELKKEIEE 277 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444433233333333444444444444333
No 155
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=37.80 E-value=1.6e+02 Score=21.62 Aligned_cols=54 Identities=19% Similarity=0.285 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHH
Q 027314 148 AKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQ 208 (225)
Q Consensus 148 ~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~ 208 (225)
.+++.+++..+.-+.+.+..+..=.+.|+.|++ ++++...+.+....++++.+.
T Consensus 6 ~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~-------kt~~L~~~a~~F~k~a~~l~r 59 (89)
T PF00957_consen 6 EQIQEQVEEVKNIMRENIDKLLERGEKLEELED-------KTEELSDNAKQFKKNAKKLKR 59 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH-------HHHHHHHHhHHHHHHHHHHHH
Confidence 334444544444444444443222677777763 444444444444444444333
No 156
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=37.80 E-value=2e+02 Score=28.05 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=13.4
Q ss_pred HhHHHHHhhHHHHHHHHHhHHHHhh
Q 027314 194 TNLAVMASKERQYLQQYNNYKVSIF 218 (225)
Q Consensus 194 r~~k~L~~K~~Ey~~r~~~~~~~~~ 218 (225)
....-+..++++.+++++.++..|+
T Consensus 145 ~~~~~~~~~~~~~~~~l~~l~~~l~ 169 (525)
T TIGR02231 145 TEDREAERRIRELEKQLSELQNELN 169 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555566666665555544
No 157
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=37.75 E-value=2.5e+02 Score=23.63 Aligned_cols=57 Identities=16% Similarity=0.206 Sum_probs=40.8
Q ss_pred HHHHHHHHhhh--cCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHH-hhhhhccCC
Q 027314 169 TYLKRTLGQLE--DDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVS-IFCYHYVGI 225 (225)
Q Consensus 169 ~~Lk~~L~~Le--~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~-~~~~~~~~~ 225 (225)
..|++....|- .+..+++....+..+.+.-+....++.+.++..++.. -.|+..|||
T Consensus 26 ~kl~r~Y~~lm~g~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~kvgv 85 (151)
T PF14584_consen 26 RKLKRRYDALMRGKDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQKVGV 85 (151)
T ss_pred HHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEE
Confidence 33566666662 2356778888888888888888888889998888854 466776664
No 158
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=37.60 E-value=3.2e+02 Score=24.87 Aligned_cols=119 Identities=16% Similarity=0.192 Sum_probs=56.7
Q ss_pred cCCChhHHHHHHHHHHHHHHhCCCCCChhhHHHHHHHhhhhHHH----HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 027314 99 ESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTA----VEEKRAKVQKES-KILLDYTRKAIARLTYLKR 173 (225)
Q Consensus 99 ~sLs~~G~~aL~aLa~~A~~L~~~dts~~sl~~ai~dLt~~~~~----~e~~~~r~~~e~-~~L~~~l~k~l~~~~~Lk~ 173 (225)
..++..|..|.++|+.++..-.. .+.--.+|.+++.++.-=-+ +++.......++ .-|.++++.. ..++..
T Consensus 37 ~a~~~A~~~y~dal~Kige~A~~-s~~SkeLG~~L~qi~ev~r~i~~~le~~lK~Fh~Ell~~LE~k~elD---~kyi~a 112 (226)
T cd07645 37 NAMVLAGKAYYDGVAKIGEIAAV-SPVSKELGHVLMEISDVHKKLNDSLEENFKKFHREIIAELERKTDLD---VKYMTA 112 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 34456677788888887755444 33334577777665422211 222222111111 1111222211 222344
Q ss_pred HHHhhhcC----cCchH---HHHHHHHHh------HHHHHhhHHHHHHHHHhHHHHhhhhh
Q 027314 174 TLGQLEDD----VAPCE---AQMENWKTN------LAVMASKERQYLQQYNNYKVSIFCYH 221 (225)
Q Consensus 174 ~L~~Le~~----~a~l~---~q~~ew~r~------~k~L~~K~~Ey~~r~~~~~~~~~~~~ 221 (225)
.++..+.+ ...++ +.+.-|.|+ .-=...|+-||.+-+++-+.-|..|.
T Consensus 113 ~~Kkyq~E~k~k~dsLeK~~seLKK~RRKsqg~kn~~kye~Ke~~~~e~~~~~q~el~~f~ 173 (226)
T cd07645 113 TLKRYQTEHKNKLDSLEKSQADLKKIRRKSQGRRNASKYEHKENEYLETVTSRQSDIQKFI 173 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433 12222 223333333 21234788899998888777776654
No 159
>PHA02562 46 endonuclease subunit; Provisional
Probab=37.54 E-value=3.8e+02 Score=25.80 Aligned_cols=6 Identities=0% Similarity=-0.069 Sum_probs=2.2
Q ss_pred hhhhHH
Q 027314 136 ISLRKT 141 (225)
Q Consensus 136 Lt~~~~ 141 (225)
+..++.
T Consensus 311 l~~~l~ 316 (562)
T PHA02562 311 LQHSLE 316 (562)
T ss_pred HHHHHH
Confidence 333333
No 160
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=37.48 E-value=4.2e+02 Score=26.36 Aligned_cols=79 Identities=14% Similarity=0.039 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHHHHhCC--------CCCChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027314 104 NVVSSAQVLANVANLLNI--------RDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTL 175 (225)
Q Consensus 104 ~G~~aL~aLa~~A~~L~~--------~dts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L 175 (225)
+-...|++|-.+++.|+= -.+||.-+.-++-++.-.+....+....++.+.+.|++.++--..-...+..-+
T Consensus 213 ~~~k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e~~~~l 292 (446)
T KOG4438|consen 213 EKNKILNALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKELKALL 292 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 345678888888887762 246999999999999998988888999999999999988887766666666666
Q ss_pred HhhhcCc
Q 027314 176 GQLEDDV 182 (225)
Q Consensus 176 ~~Le~~~ 182 (225)
..+.++.
T Consensus 293 k~i~~~~ 299 (446)
T KOG4438|consen 293 KKISSDG 299 (446)
T ss_pred HHHHHhh
Confidence 6666664
No 161
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=37.30 E-value=3.5e+02 Score=26.03 Aligned_cols=21 Identities=5% Similarity=0.061 Sum_probs=9.4
Q ss_pred HHHHHhhHHHHHHHHHhHHHH
Q 027314 196 LAVMASKERQYLQQYNNYKVS 216 (225)
Q Consensus 196 ~k~L~~K~~Ey~~r~~~~~~~ 216 (225)
.+.++.++.++..++..++..
T Consensus 78 ~~~l~~~~~~~~~~~~~~~~~ 98 (418)
T TIGR00414 78 LKELKEELTELSAALKALEAE 98 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433
No 162
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=37.19 E-value=2.8e+02 Score=26.30 Aligned_cols=22 Identities=9% Similarity=0.211 Sum_probs=13.8
Q ss_pred hHHHHHHHhhhhHHHHHHHHHH
Q 027314 128 SFLVAMGDISLRKTAVEEKRAK 149 (225)
Q Consensus 128 sl~~ai~dLt~~~~~~e~~~~r 149 (225)
+|..-|..|..+..+++.+..+
T Consensus 110 ~L~rkl~qLr~EK~~lE~~Le~ 131 (310)
T PF09755_consen 110 DLSRKLNQLRQEKVELENQLEQ 131 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666677777666554
No 163
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=37.13 E-value=1.4e+02 Score=23.76 Aligned_cols=54 Identities=11% Similarity=0.107 Sum_probs=39.0
Q ss_pred CCCChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027314 122 RDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLE 179 (225)
Q Consensus 122 ~dts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le 179 (225)
.|++.-++...|..+..++...-++..+--...+.||++|..---. +..|..|.
T Consensus 30 nDsaVqsLF~~lt~mH~~LL~~i~~~ee~R~~~E~lQdkL~qi~eA----R~AlDalR 83 (96)
T PF12210_consen 30 NDSAVQSLFQTLTAMHPQLLKYIQEQEEKRVYYEGLQDKLAQIKEA----RAALDALR 83 (96)
T ss_dssp G-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 4777788999999999888777666666666788888887654444 66666665
No 164
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=37.08 E-value=2.5e+02 Score=25.16 Aligned_cols=69 Identities=13% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHh
Q 027314 142 AVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSI 217 (225)
Q Consensus 142 ~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~ 217 (225)
+.+.....+.+++..|..-+++.--++..+...|.+++ .-..+=-|.+|+|..+.-+-.+++..+..-|
T Consensus 1 ~ae~~va~lnrri~~leeele~aqErl~~a~~KL~Eae-------q~~dE~er~~Kv~enr~~kdEE~~e~~e~qL 69 (205)
T KOG1003|consen 1 KAEADVAALNRRIQLLEEELDRAQERLATALQKLEEAE-------QAADESERGMKVIENRAQKLEEKMEAQEAQL 69 (205)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
No 165
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=36.88 E-value=44 Score=25.16 Aligned_cols=22 Identities=5% Similarity=0.021 Sum_probs=19.6
Q ss_pred HHHHHhhHHHHHHHHHhHHHHh
Q 027314 196 LAVMASKERQYLQQYNNYKVSI 217 (225)
Q Consensus 196 ~k~L~~K~~Ey~~r~~~~~~~~ 217 (225)
.++...|+.||.+|+..++..+
T Consensus 49 k~~yr~ki~eY~~Rae~Lk~~v 70 (75)
T cd02682 49 RLIYEQMINEYKRRIEVLEKQN 70 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 5678999999999999999875
No 166
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=36.70 E-value=53 Score=23.52 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=20.6
Q ss_pred HHHHHhhHHHHHHHHHhHHHHhh
Q 027314 196 LAVMASKERQYLQQYNNYKVSIF 218 (225)
Q Consensus 196 ~k~L~~K~~Ey~~r~~~~~~~~~ 218 (225)
.+.+..|+.+|.+|...++..+.
T Consensus 49 k~~l~~k~~~yl~RaE~Lk~~l~ 71 (75)
T cd02656 49 RKLLRKKVKEYLDRAEFLKELLK 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 67899999999999999998874
No 167
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=36.40 E-value=64 Score=23.94 Aligned_cols=25 Identities=12% Similarity=0.068 Sum_probs=22.2
Q ss_pred HHHHHhhHHHHHHHHHhHHHHhhhh
Q 027314 196 LAVMASKERQYLQQYNNYKVSIFCY 220 (225)
Q Consensus 196 ~k~L~~K~~Ey~~r~~~~~~~~~~~ 220 (225)
.+++..|+.||.+|...++..|...
T Consensus 49 k~~~r~ki~eY~~RAE~Lk~~l~~~ 73 (77)
T cd02683 49 KKNLRQKISEYMDRAEAIKKRLDQE 73 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5679999999999999999998754
No 168
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=36.30 E-value=50 Score=23.98 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=20.5
Q ss_pred HHHHHhhHHHHHHHHHhHHHHhh
Q 027314 196 LAVMASKERQYLQQYNNYKVSIF 218 (225)
Q Consensus 196 ~k~L~~K~~Ey~~r~~~~~~~~~ 218 (225)
.+.++.|..||.+|...++..|.
T Consensus 49 k~~~~~k~~eyl~RaE~LK~~l~ 71 (75)
T cd02678 49 KESIRAKCTEYLDRAEKLKEYLA 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 56789999999999999998875
No 169
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=36.06 E-value=4.4e+02 Score=26.10 Aligned_cols=20 Identities=10% Similarity=0.091 Sum_probs=9.7
Q ss_pred ChhhHHHHHHHhhhhHHHHH
Q 027314 125 ELSSFLVAMGDISLRKTAVE 144 (225)
Q Consensus 125 s~~sl~~ai~dLt~~~~~~e 144 (225)
++..+..-.-.+..++..++
T Consensus 323 s~e~l~~~~~~l~~eL~~l~ 342 (563)
T TIGR00634 323 SVEEVLEYAEKIKEELDQLD 342 (563)
T ss_pred CHHHHHHHHHHHHHHHHHHh
Confidence 45555555555554444433
No 170
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=35.97 E-value=4.3e+02 Score=25.90 Aligned_cols=29 Identities=21% Similarity=0.155 Sum_probs=21.4
Q ss_pred cccccCCChhHHHHHHHHHHHHHHhCCCC
Q 027314 95 GLAQESLPSNVVSSAQVLANVANLLNIRD 123 (225)
Q Consensus 95 gls~~sLs~~G~~aL~aLa~~A~~L~~~d 123 (225)
+..+....+.|...+-.++-+..+||+--
T Consensus 20 p~A~~~~~k~g~g~~l~~~all~aLgLGa 48 (391)
T COG2959 20 PVAPETVSKNGAGLLLSLAALLLALGLGA 48 (391)
T ss_pred CCCccccCCCCchhHHHHHHHHHHHHhch
Confidence 34466677888888888888888888754
No 171
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=35.45 E-value=3.2e+02 Score=24.25 Aligned_cols=87 Identities=15% Similarity=0.186 Sum_probs=49.2
Q ss_pred ChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHH----HHhHHHHH
Q 027314 125 ELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENW----KTNLAVMA 200 (225)
Q Consensus 125 s~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew----~r~~k~L~ 200 (225)
--+..+..+..=|.++.+.|=.+.+++.+..-+..-+...-.+..+|+.+|.--... ..++... ...+.-|.
T Consensus 85 ~AE~~Y~~F~~Qt~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q----~~~va~~Q~q~r~ea~aL~ 160 (192)
T PF11180_consen 85 RAEAIYRDFAQQTARLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQ----QQQVAARQQQARQEAQALE 160 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 345688899999999999999998655555544444444444444444444333322 1222222 22345565
Q ss_pred hhHHHHHHHHHhHHH
Q 027314 201 SKERQYLQQYNNYKV 215 (225)
Q Consensus 201 ~K~~Ey~~r~~~~~~ 215 (225)
..-++++.|+..++.
T Consensus 161 ~e~~aaqaQL~~lQ~ 175 (192)
T PF11180_consen 161 AERRAAQAQLRQLQR 175 (192)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555554
No 172
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=35.31 E-value=4.1e+02 Score=27.29 Aligned_cols=10 Identities=20% Similarity=0.112 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 027314 106 VSSAQVLANV 115 (225)
Q Consensus 106 ~~aL~aLa~~ 115 (225)
...+|++++.
T Consensus 243 a~ilN~la~~ 252 (726)
T PRK09841 243 TRILNSIANN 252 (726)
T ss_pred HHHHHHHHHH
Confidence 3334444433
No 173
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=35.08 E-value=5.1e+02 Score=26.50 Aligned_cols=81 Identities=20% Similarity=0.206 Sum_probs=31.6
Q ss_pred HHHHHHhccccccCCChhHHHHHHHHHHHHHHhCCCCCChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027314 87 IREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIA 166 (225)
Q Consensus 87 l~elLe~vgls~~sLs~~G~~aL~aLa~~A~~L~~~dts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~ 166 (225)
++..++.+.+.|..|- .-..=|..|-.++---|..-+++-.|...+..==..+...++....++.+++.++..+.+.-.
T Consensus 285 l~~~~~~le~Dp~~L~-~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~ 363 (557)
T COG0497 285 LRAYLDELEFDPNRLE-EVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAE 363 (557)
T ss_pred HHHHHhcCCCCHHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444454444444432 122223344444444444433333333333222222223333344444444444444444433
Q ss_pred HH
Q 027314 167 RL 168 (225)
Q Consensus 167 ~~ 168 (225)
.+
T Consensus 364 ~L 365 (557)
T COG0497 364 AL 365 (557)
T ss_pred HH
Confidence 33
No 174
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=34.96 E-value=1.7e+02 Score=26.16 Aligned_cols=54 Identities=22% Similarity=0.187 Sum_probs=38.2
Q ss_pred CCCChhhHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027314 122 RDTELSSFLVAMGDISLR-KTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTL 175 (225)
Q Consensus 122 ~dts~~sl~~ai~dLt~~-~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L 175 (225)
.+|..++...+...||-+ .-++.....+++-||.+|..-|-..-.+.-.||+.|
T Consensus 27 ~~~~~a~s~s~~~~LSe~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 27 VGTDVAASASEFEALSEEEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred CccchhhhhhHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666777888888844 445567788888888888777776666666676654
No 175
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=34.49 E-value=78 Score=31.59 Aligned_cols=14 Identities=21% Similarity=0.283 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 027314 144 EEKRAKVQKESKIL 157 (225)
Q Consensus 144 e~~~~r~~~e~~~L 157 (225)
+.+..+++++++.|
T Consensus 75 Q~kasELEKqLaaL 88 (475)
T PRK13729 75 QVTAAQMQKQYEEI 88 (475)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 176
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=34.02 E-value=81 Score=26.89 Aligned_cols=8 Identities=50% Similarity=0.638 Sum_probs=3.0
Q ss_pred HHHHHhhh
Q 027314 172 KRTLGQLE 179 (225)
Q Consensus 172 k~~L~~Le 179 (225)
+..+..|+
T Consensus 122 ~~~~~~L~ 129 (194)
T PF08614_consen 122 EAELAQLE 129 (194)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 177
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=33.81 E-value=3e+02 Score=23.45 Aligned_cols=87 Identities=16% Similarity=0.261 Sum_probs=50.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cCchHHHHHHHHHhHHHHHhhHHHHHHH
Q 027314 131 VAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDD-VAPCEAQMENWKTNLAVMASKERQYLQQ 209 (225)
Q Consensus 131 ~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~-~a~l~~q~~ew~r~~k~L~~K~~Ey~~r 209 (225)
.....+..++.+++.....+=.+++.|....+++-.+|...-+.+.....+ ...-=.+..+-+-.+-++..|+.+.+.|
T Consensus 27 ~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~r 106 (159)
T PF05384_consen 27 QEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRER 106 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777777788888877777777765555555443322 1111133344444455555555555555
Q ss_pred HHhHHHHh
Q 027314 210 YNNYKVSI 217 (225)
Q Consensus 210 ~~~~~~~~ 217 (225)
=..++..|
T Consensus 107 RD~LErrl 114 (159)
T PF05384_consen 107 RDELERRL 114 (159)
T ss_pred HHHHHHHH
Confidence 44444433
No 178
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=33.60 E-value=3e+02 Score=23.40 Aligned_cols=10 Identities=10% Similarity=0.222 Sum_probs=4.8
Q ss_pred hhHHHHHHHh
Q 027314 127 SSFLVAMGDI 136 (225)
Q Consensus 127 ~sl~~ai~dL 136 (225)
.+|+..|.++
T Consensus 90 ~syY~~L~~~ 99 (184)
T PF05791_consen 90 QSYYDTLVEA 99 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455544444
No 179
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=33.54 E-value=3.2e+02 Score=23.73 Aligned_cols=43 Identities=14% Similarity=0.160 Sum_probs=26.5
Q ss_pred HhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhh
Q 027314 176 GQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIF 218 (225)
Q Consensus 176 ~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~ 218 (225)
.+++..-..++.++.+.++....++.+-+.....|+.+++-.+
T Consensus 127 ~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~ 169 (190)
T PF05266_consen 127 KELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAE 169 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555577777777777777666666666666655443
No 180
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=33.40 E-value=2.2e+02 Score=25.29 Aligned_cols=29 Identities=17% Similarity=0.154 Sum_probs=15.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 027314 129 FLVAMGDISLRKTAVEEKRAKVQKESKIL 157 (225)
Q Consensus 129 l~~ai~dLt~~~~~~e~~~~r~~~e~~~L 157 (225)
++....+.-....++.+++.+++.|+..|
T Consensus 60 ~~~~~~~~~~~~~~l~~en~~L~~e~~~l 88 (276)
T PRK13922 60 FVSGVFESLASLFDLREENEELKKELLEL 88 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555566666555555555
No 181
>COG4423 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.34 E-value=1.8e+02 Score=22.43 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.0
Q ss_pred HHhCCCCCChhhHHHHHHHhhhh
Q 027314 117 NLLNIRDTELSSFLVAMGDISLR 139 (225)
Q Consensus 117 ~~L~~~dts~~sl~~ai~dLt~~ 139 (225)
|.|+|+||+...+...+..++-+
T Consensus 1 MALnIKDp~~d~lar~LA~rtg~ 23 (81)
T COG4423 1 MALNIKDPEVDRLARELAARTGE 23 (81)
T ss_pred CCCccCChHHHHHHHHHHHHhCC
Confidence 46899999999999999988844
No 182
>PF13514 AAA_27: AAA domain
Probab=33.07 E-value=6.6e+02 Score=27.18 Aligned_cols=27 Identities=22% Similarity=0.492 Sum_probs=14.8
Q ss_pred HHHHHHhccccccCCChhHHHHHHHHH
Q 027314 87 IREILENVGLAQESLPSNVVSSAQVLA 113 (225)
Q Consensus 87 l~elLe~vgls~~sLs~~G~~aL~aLa 113 (225)
+.+.+..+||+...-+......+..|-
T Consensus 710 w~~~l~~~gL~~~~~~~~~~~~l~~l~ 736 (1111)
T PF13514_consen 710 WQEALAELGLPADASPEEALEALELLE 736 (1111)
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHH
Confidence 555566777766655544444444433
No 183
>PF15456 Uds1: Up-regulated During Septation
Probab=33.03 E-value=2.7e+02 Score=22.70 Aligned_cols=37 Identities=14% Similarity=0.177 Sum_probs=23.9
Q ss_pred HHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHH
Q 027314 174 TLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQY 210 (225)
Q Consensus 174 ~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~ 210 (225)
.+.+-+.+.+.+..+.++|.+.+--+.....+.++|+
T Consensus 75 ~~~~~eeel~~~~rk~ee~~~eL~~le~R~~~~~~rL 111 (124)
T PF15456_consen 75 SSLKAEEELAESDRKCEELAQELWKLENRLAEVRQRL 111 (124)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444456666777777777777777777766665
No 184
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=32.81 E-value=1.4e+02 Score=25.35 Aligned_cols=11 Identities=18% Similarity=0.193 Sum_probs=4.8
Q ss_pred HhHHHHhhhhh
Q 027314 211 NNYKVSIFCYH 221 (225)
Q Consensus 211 ~~~~~~~~~~~ 221 (225)
=+|...|..|+
T Consensus 87 L~YA~rISk~t 97 (188)
T PF10018_consen 87 LSYAHRISKFT 97 (188)
T ss_pred HHHHHHHHHhc
Confidence 34444444443
No 185
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=32.74 E-value=3.4e+02 Score=23.73 Aligned_cols=50 Identities=10% Similarity=0.208 Sum_probs=35.4
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027314 127 SSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLE 179 (225)
Q Consensus 127 ~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le 179 (225)
+.+......+..+...++++..+++.+++.....+.++-+. |...|.+++
T Consensus 189 G~i~~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~~qf~~---me~~i~~ln 238 (239)
T PF07195_consen 189 GSITSRIDSLNSQIKSLDKQIEDLEERLESKEERLRKQFSA---MESLISQLN 238 (239)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhc
Confidence 55666777777777777777777777777777777777776 455555553
No 186
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=32.63 E-value=6.2e+02 Score=27.77 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=11.5
Q ss_pred CHHHHHHHHHHHHhhHhhhHHHHH
Q 027314 45 TSRSVAHLYNLATLSQAKTKAANI 68 (225)
Q Consensus 45 N~dTl~~L~~LA~~NeaaDee~~L 68 (225)
+|+...-+-.+-...+.+.++...
T Consensus 464 ~~e~~~~~~~~~~~~~~a~~~~~~ 487 (1201)
T PF12128_consen 464 TEEEKEQLEQADKRLEQAQEQQNQ 487 (1201)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555544444444444433
No 187
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=32.51 E-value=5.2e+02 Score=25.80 Aligned_cols=63 Identities=13% Similarity=0.168 Sum_probs=42.2
Q ss_pred HHhCCCCCChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027314 117 NLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLE 179 (225)
Q Consensus 117 ~~L~~~dts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le 179 (225)
..++-....-+.+-..+-++..++.+++....++...++.|.+--..+-..+..++..|.+++
T Consensus 369 ~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ik 431 (569)
T PRK04778 369 ERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIK 431 (569)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555777777777888888888877777777777776655555555556666666665
No 188
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=32.40 E-value=3.7e+02 Score=24.02 Aligned_cols=35 Identities=20% Similarity=0.154 Sum_probs=19.5
Q ss_pred CChhHHHHHHHHHHHHHH-hCCCCCChhhHHHHHHHhh
Q 027314 101 LPSNVVSSAQVLANVANL-LNIRDTELSSFLVAMGDIS 137 (225)
Q Consensus 101 Ls~~G~~aL~aLa~~A~~-L~~~dts~~sl~~ai~dLt 137 (225)
++.-+..++++|+.+|.. .+.+ ..-.+|.++..+.
T Consensus 39 ~~~a~~~~~dAl~kia~~A~~s~--~sk~lG~~L~~i~ 74 (223)
T cd07605 39 LSQAAKVFFDALAKIGELASQSR--GSQELGEALKQIV 74 (223)
T ss_pred HHHHHHHHHHHHHHHHHHhccCC--cchHHHHHHHHHH
Confidence 345566677777666644 2333 3345666665544
No 189
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=32.33 E-value=3.7e+02 Score=24.00 Aligned_cols=9 Identities=0% Similarity=0.213 Sum_probs=1.9
Q ss_pred HHHHHHHhh
Q 027314 23 DVKAWLASQ 31 (225)
Q Consensus 23 ~V~sWL~~k 31 (225)
.|+.|-.++
T Consensus 33 ~i~~~~~~~ 41 (312)
T PF00038_consen 33 EIEELREKK 41 (312)
T ss_dssp HHHH-----
T ss_pred HHHHHHhcc
Confidence 444444443
No 190
>KOG4083 consensus Head-elevated expression protein [Transcription]
Probab=32.22 E-value=1.2e+02 Score=26.88 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=23.3
Q ss_pred HHHHHhhHHHHHHHHHhHHHHhhhhhcc
Q 027314 196 LAVMASKERQYLQQYNNYKVSIFCYHYV 223 (225)
Q Consensus 196 ~k~L~~K~~Ey~~r~~~~~~~~~~~~~~ 223 (225)
.+|.+.-.+||++=+.+.++.+++||-+
T Consensus 118 ~e~ykv~~eqy~~aaE~VekrFk~~~~~ 145 (192)
T KOG4083|consen 118 SEFYKVTTEQYQKAAERVEKRFKAYHRE 145 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 3566667789999999999999999954
No 191
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=32.06 E-value=2.1e+02 Score=21.20 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 027314 157 LLDYTRKAIARLTYLKRTLGQLE 179 (225)
Q Consensus 157 L~~~l~k~l~~~~~Lk~~L~~Le 179 (225)
|...+..++..+.-|+..+.+|+
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLk 31 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELK 31 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444454444444
No 192
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=31.71 E-value=7.8e+02 Score=27.59 Aligned_cols=65 Identities=8% Similarity=0.104 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHH
Q 027314 144 EEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYN 211 (225)
Q Consensus 144 e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~ 211 (225)
+++..+...++..+...+...+.. |...|.++......+++......+....+..+......++.
T Consensus 902 ~~e~~~a~~~l~~l~e~l~~~~ee---l~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~~ 966 (1353)
T TIGR02680 902 RAEAEEASLRLRTLEESVGAMVDE---IRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKRA 966 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444333222 45555555544455555555555555555555555555553
No 193
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=31.55 E-value=4.2e+02 Score=24.48 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=19.1
Q ss_pred HHHHhHHHHHhhHHHHHHHHHhHHHHhhhhh
Q 027314 191 NWKTNLAVMASKERQYLQQYNNYKVSIFCYH 221 (225)
Q Consensus 191 ew~r~~k~L~~K~~Ey~~r~~~~~~~~~~~~ 221 (225)
.|.+.+=.+-+|+.||-.++..|=..--.||
T Consensus 193 ~~~a~Mynfl~kE~e~a~~l~~lveaQ~~YH 223 (257)
T cd07620 193 QYSADLYHFATKEDSYANYFIRLLELQAEYH 223 (257)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3455555566677777777766655555565
No 194
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=31.41 E-value=3.1e+02 Score=22.83 Aligned_cols=89 Identities=12% Similarity=0.112 Sum_probs=61.6
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhcCcCchHHHHHHHHHhHHHH
Q 027314 127 SSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLT-------YLKRTLGQLEDDVAPCEAQMENWKTNLAVM 199 (225)
Q Consensus 127 ~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~-------~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L 199 (225)
.++...|.+|...++++++.....+.-+..+.+.++....-.. ...+.|++.- .-..+......-.++.+|
T Consensus 32 ~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~--~~~~e~~i~~~~~~I~~L 109 (146)
T PF08702_consen 32 RDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMI--IYILETKIINQPSNIRVL 109 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHH--HHHHHHHHhhhHhHHHHH
Confidence 3467788888899999998888888888888888777664311 1122222222 345557777778888888
Q ss_pred HhhHHHHHHHHHhHHHHh
Q 027314 200 ASKERQYLQQYNNYKVSI 217 (225)
Q Consensus 200 ~~K~~Ey~~r~~~~~~~~ 217 (225)
..=++.-+.++..|+..+
T Consensus 110 q~~~~~~~~ki~~Le~~i 127 (146)
T PF08702_consen 110 QNILRSNRQKIQRLEQDI 127 (146)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888887777554
No 195
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=31.40 E-value=6.4e+02 Score=28.01 Aligned_cols=89 Identities=9% Similarity=0.140 Sum_probs=55.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc-------CchHHHHHHHHHhHHHHHhhH
Q 027314 131 VAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDV-------APCEAQMENWKTNLAVMASKE 203 (225)
Q Consensus 131 ~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~-------a~l~~q~~ew~r~~k~L~~K~ 203 (225)
..|.+|..-+.+...+...++.+++.+..-+.+.+..+..|...+++.+... ..+....++-+...|.|--++
T Consensus 397 ~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE 476 (1200)
T KOG0964|consen 397 SEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREE 476 (1200)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666777777777777777777777776666666666554443 333344455555566666666
Q ss_pred HHHHHHHHhHHHHhhh
Q 027314 204 RQYLQQYNNYKVSIFC 219 (225)
Q Consensus 204 ~Ey~~r~~~~~~~~~~ 219 (225)
...+.-+++++..|.+
T Consensus 477 ~~l~~~i~~~~~dl~~ 492 (1200)
T KOG0964|consen 477 KKLRSLIANLEEDLSR 492 (1200)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666667666666654
No 196
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=31.03 E-value=2.9e+02 Score=22.43 Aligned_cols=87 Identities=18% Similarity=0.274 Sum_probs=47.5
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHH----HHHHhHHHHHhh
Q 027314 127 SSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQME----NWKTNLAVMASK 202 (225)
Q Consensus 127 ~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~----ew~r~~k~L~~K 202 (225)
+.+...|-.+..++..+.++..+++.+ .+.++.+|.+++...+.+......++.+..+.. ...+-+-+|+-|
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~----r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK 94 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAE----RDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEK 94 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 345555555556666666666643333 344466666665555555444444444443333 345567778877
Q ss_pred HH---HHHHHHHhHHHHh
Q 027314 203 ER---QYLQQYNNYKVSI 217 (225)
Q Consensus 203 ~~---Ey~~r~~~~~~~~ 217 (225)
.+ |.+..|.-+|.|.
T Consensus 95 ~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 95 SEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 65 4555666666553
No 197
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=30.83 E-value=1.1e+02 Score=26.91 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=20.8
Q ss_pred HHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhhhh
Q 027314 187 AQMENWKTNLAVMASKERQYLQQYNNYKVSIFCY 220 (225)
Q Consensus 187 ~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~~~ 220 (225)
.+...|.+. |..|...|..|+++++.++..|
T Consensus 207 ~~i~~~~~r---l~~~~~~l~~qf~~me~~i~~l 237 (239)
T PF07195_consen 207 KQIEDLEER---LESKEERLRKQFSAMESLISQL 237 (239)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 444444333 5667778888888888887765
No 198
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=30.81 E-value=39 Score=25.92 Aligned_cols=32 Identities=13% Similarity=0.271 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCCCHHHHHHHHH
Q 027314 21 IADVKAWLASQFEASAKEVPAFEYTSRSVAHLYN 54 (225)
Q Consensus 21 ~s~V~sWL~~kF~~~~~pVP~FErN~dTl~~L~~ 54 (225)
..-+.+||.+.|+ +-.+|+-|.=-+||..|..
T Consensus 32 ~E~l~~~L~~~yp--~i~~Ps~e~l~~~L~~Li~ 63 (80)
T PF10264_consen 32 QETLREHLRKHYP--GIAIPSQEVLYNTLGTLIK 63 (80)
T ss_pred HHHHHHHHHHhCC--CCCCCCHHHHHHHHHHHHH
Confidence 3468899999999 8889999888888877753
No 199
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=30.59 E-value=9.5e+02 Score=28.28 Aligned_cols=90 Identities=12% Similarity=0.192 Sum_probs=56.2
Q ss_pred hhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHH
Q 027314 126 LSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQ 205 (225)
Q Consensus 126 ~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~E 205 (225)
|.+|-..+-+|..++--......+..+-.+.=.+.+++++.. |+.+|.+++....--..+......++..++....+
T Consensus 631 ~~~~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~---ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~t 707 (1822)
T KOG4674|consen 631 PRAKEKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTA---IRSQLEKLKNELNLAKEKLENLEKNLELTKEEVET 707 (1822)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333667777777666544433333333333333445666666 68888888877433335666677778888888888
Q ss_pred HHHHHHhHHHHhh
Q 027314 206 YLQQYNNYKVSIF 218 (225)
Q Consensus 206 y~~r~~~~~~~~~ 218 (225)
.+.|-.+|...|-
T Consensus 708 L~er~~~l~~~i~ 720 (1822)
T KOG4674|consen 708 LEERNKNLQSTIS 720 (1822)
T ss_pred HHHHHHHHHHHHH
Confidence 8877777776553
No 200
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=30.57 E-value=2.8e+02 Score=25.12 Aligned_cols=39 Identities=23% Similarity=0.364 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 027314 143 VEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDD 181 (225)
Q Consensus 143 ~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~ 181 (225)
+..||.|...+...|..-+++.-.....|+..+++|+.|
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777666666555555567777776644
No 201
>PF11420 Subtilosin_A: Bacteriocin subtilosin A; InterPro: IPR021539 Subtilosin A is a bacteriocin from Bacillus subtilis.The protein has a cyclized peptide backbone and forms three cross-liks between the sulphurs of Cys13, Cys7 and Cys4 and the alpha-positions of Phe22,Thr28 and Phe31 []. ; PDB: 1PXQ_A.
Probab=30.40 E-value=23 Score=22.93 Aligned_cols=11 Identities=27% Similarity=0.588 Sum_probs=4.1
Q ss_pred CCCCCCCCCCH
Q 027314 36 AKEVPAFEYTS 46 (225)
Q Consensus 36 ~~pVP~FErN~ 46 (225)
+.|||.||+-.
T Consensus 16 dgpipdfeia~ 26 (35)
T PF11420_consen 16 DGPIPDFEIAG 26 (35)
T ss_dssp TTT---S--S-
T ss_pred cCCCCcchhhh
Confidence 78999999864
No 202
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=30.23 E-value=4.5e+02 Score=24.40 Aligned_cols=21 Identities=0% Similarity=0.060 Sum_probs=8.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHH
Q 027314 129 FLVAMGDISLRKTAVEEKRAK 149 (225)
Q Consensus 129 l~~ai~dLt~~~~~~e~~~~r 149 (225)
+...+..|..+..++.+...+
T Consensus 48 ~~~el~~le~Ee~~l~~eL~~ 68 (314)
T PF04111_consen 48 LEEELEKLEQEEEELLQELEE 68 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444333
No 203
>PRK14154 heat shock protein GrpE; Provisional
Probab=29.86 E-value=3.7e+02 Score=23.92 Aligned_cols=50 Identities=8% Similarity=0.020 Sum_probs=39.4
Q ss_pred hCCCCCChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027314 119 LNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARL 168 (225)
Q Consensus 119 L~~~dts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~ 168 (225)
-|...|....+-..+..+..++.+++.+..|+..+.+.+.+.+.++....
T Consensus 47 ~~~~~~~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~ 96 (208)
T PRK14154 47 EGLEFPSREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADI 96 (208)
T ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777778888888888888888888888888888888887777664
No 204
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=29.75 E-value=5.6e+02 Score=25.38 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhCC-CCCChhhHHHHHHH
Q 027314 108 SAQVLANVANLLNI-RDTELSSFLVAMGD 135 (225)
Q Consensus 108 aL~aLa~~A~~L~~-~dts~~sl~~ai~d 135 (225)
+++.|..+...|.- -|+.+..+...+.+
T Consensus 249 ~~~~l~~~~~~l~~~~d~~~~~~~~~l~~ 277 (563)
T TIGR00634 249 LLEGLGEAQLALASVIDGSLRELAEQVGN 277 (563)
T ss_pred HHHHHHHHHHHHHHhhhHhHHHHHHHHHH
Confidence 34444444444432 44444444443333
No 205
>PRK14127 cell division protein GpsB; Provisional
Probab=29.72 E-value=2.5e+02 Score=22.61 Aligned_cols=19 Identities=21% Similarity=0.468 Sum_probs=13.5
Q ss_pred HHhHHHHHhhHHHHHHHHHhHHHHhhh
Q 027314 193 KTNLAVMASKERQYLQQYNNYKVSIFC 219 (225)
Q Consensus 193 ~r~~k~L~~K~~Ey~~r~~~~~~~~~~ 219 (225)
.+|.++| .||++|+.-.|.
T Consensus 85 ~tn~DiL--------KRls~LEk~VFg 103 (109)
T PRK14127 85 ATNYDIL--------KRLSNLEKHVFG 103 (109)
T ss_pred cchHHHH--------HHHHHHHHHHhc
Confidence 4666666 489999877664
No 206
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=29.71 E-value=7.1e+02 Score=26.49 Aligned_cols=70 Identities=13% Similarity=0.183 Sum_probs=33.5
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHhhhh--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027314 112 LANVANLLNIRDTELSSFLVAMGDISLR--------------KTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQ 177 (225)
Q Consensus 112 La~~A~~L~~~dts~~sl~~ai~dLt~~--------------~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~ 177 (225)
+-.+.+.||-+++.+..+..-+-+++.. +...++....++.+++.|.-.++.....+.-....+.+
T Consensus 289 ~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~ 368 (775)
T PF10174_consen 289 MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEK 368 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888885555444444433322 23333444444445555544444444333333333444
Q ss_pred hhcC
Q 027314 178 LEDD 181 (225)
Q Consensus 178 Le~~ 181 (225)
++.+
T Consensus 369 ~qeE 372 (775)
T PF10174_consen 369 LQEE 372 (775)
T ss_pred HHHH
Confidence 4433
No 207
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=29.64 E-value=2.6e+02 Score=23.50 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=12.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHH
Q 027314 130 LVAMGDISLRKTAVEEKRAKVQKESK 155 (225)
Q Consensus 130 ~~ai~dLt~~~~~~e~~~~r~~~e~~ 155 (225)
+..+..+-.++...+++...+.++.+
T Consensus 117 I~r~~~li~~l~~~~~~~~~~~kq~~ 142 (192)
T PF05529_consen 117 IRRVHSLIKELIKLEEKLEALKKQAE 142 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555554444444
No 208
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=29.57 E-value=95 Score=24.53 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=10.8
Q ss_pred HHHHHHHhHHHHHhhHHHHHHHH
Q 027314 188 QMENWKTNLAVMASKERQYLQQY 210 (225)
Q Consensus 188 q~~ew~r~~k~L~~K~~Ey~~r~ 210 (225)
+..+-+.-.+.+..|...|.+|+
T Consensus 95 ~~~~l~~~~~~L~~~~~~~~~~~ 117 (118)
T cd04776 95 QRRDIDAALAELDAAEERCRERL 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333444555555555554
No 209
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=29.50 E-value=4.2e+02 Score=26.75 Aligned_cols=41 Identities=15% Similarity=0.092 Sum_probs=30.5
Q ss_pred hhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027314 126 LSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIA 166 (225)
Q Consensus 126 ~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~ 166 (225)
......++..+..++.++++..++++.+++.+.++....+.
T Consensus 210 ~~~p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~ 250 (646)
T PRK05771 210 EGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELL 250 (646)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888888888888888888887766554444
No 210
>PRK02224 chromosome segregation protein; Provisional
Probab=29.18 E-value=6.6e+02 Score=25.95 Aligned_cols=52 Identities=15% Similarity=0.199 Sum_probs=22.3
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027314 127 SSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQL 178 (225)
Q Consensus 127 ~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~L 178 (225)
..+-..+.++..+.-++.+....+..++..+...+...-..+..++..+.++
T Consensus 345 e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el 396 (880)
T PRK02224 345 ESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEEL 396 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555544444444444444444444333333333333344444444
No 211
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=29.10 E-value=3.7e+02 Score=23.11 Aligned_cols=91 Identities=11% Similarity=0.146 Sum_probs=48.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhhcCc----CchHHHHHHHHHhHHH
Q 027314 129 FLVAMGDISLRKTAVEEKRAKVQKESKILLDYT------RKAIARLTYLKRTLGQLEDDV----APCEAQMENWKTNLAV 198 (225)
Q Consensus 129 l~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l------~k~l~~~~~Lk~~L~~Le~~~----a~l~~q~~ew~r~~k~ 198 (225)
.-..+..|+.++..++.+..+++.+++....-- ...+..+..|++.+++|+.+. .--|.+...-.+.++.
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~ 146 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKI 146 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 334444555555555555555444444442111 112344445555555555442 2234556666666777
Q ss_pred HHhhHHHHHHHHHhHHHHhhh
Q 027314 199 MASKERQYLQQYNNYKVSIFC 219 (225)
Q Consensus 199 L~~K~~Ey~~r~~~~~~~~~~ 219 (225)
....+..+-|-|-.++.-+.+
T Consensus 147 ~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 147 AKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHHhhHHHHHHHHHH
Confidence 777777777777777766655
No 212
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=29.04 E-value=5.5e+02 Score=26.14 Aligned_cols=10 Identities=10% Similarity=0.351 Sum_probs=4.0
Q ss_pred HHHHHhhhcC
Q 027314 172 KRTLGQLEDD 181 (225)
Q Consensus 172 k~~L~~Le~~ 181 (225)
+++++..|..
T Consensus 64 ~~di~~IE~q 73 (701)
T PF09763_consen 64 RDDIEYIESQ 73 (701)
T ss_pred HHHHHHHHhh
Confidence 4444444433
No 213
>PRK10869 recombination and repair protein; Provisional
Probab=28.87 E-value=6e+02 Score=25.40 Aligned_cols=144 Identities=10% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHhCCCCCChhhH
Q 027314 50 AHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSF 129 (225)
Q Consensus 50 ~~L~~LA~~NeaaDee~~Ll~~d~~qk~~Ey~aea~~l~elLe~vgls~~sLs~~G~~aL~aLa~~A~~L~~~dts~~sl 129 (225)
.++..|..+ ..-|..-.-+.+.+.+...+.+.-...++..++.+.++|..|. .-..=|+.+-.+.---| +++..+
T Consensus 248 ~~~~~l~~~-~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~-~ie~Rl~~l~~L~rKyg---~~~~~~ 322 (553)
T PRK10869 248 SAKQLLSEL-IGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLA-ELEQRLSKQISLARKHH---VSPEEL 322 (553)
T ss_pred HHHHHHHHH-hhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHH-HHHHHHHHHHHHHHHhC---CCHHHH
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cCchHHHHHHHHHhHHHHHhh
Q 027314 130 LVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDD-VAPCEAQMENWKTNLAVMASK 202 (225)
Q Consensus 130 ~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~-~a~l~~q~~ew~r~~k~L~~K 202 (225)
..-.-.+..++..++.... .++.|+..+.+....+..+-+.|.+.... ...+...+....+.+.|=+++
T Consensus 323 ~~~~~~l~~eL~~L~~~e~----~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~~L~~L~m~~a~ 392 (553)
T PRK10869 323 PQHHQQLLEEQQQLDDQED----DLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITESMHELSMPHGK 392 (553)
T ss_pred HHHHHHHHHHHHHhhCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcE
No 214
>PRK00846 hypothetical protein; Provisional
Probab=28.81 E-value=2.5e+02 Score=21.32 Aligned_cols=11 Identities=0% Similarity=-0.130 Sum_probs=4.1
Q ss_pred HhHHHHHhhHH
Q 027314 194 TNLAVMASKER 204 (225)
Q Consensus 194 r~~k~L~~K~~ 204 (225)
+.++.|..|++
T Consensus 48 ~ql~~L~~rL~ 58 (77)
T PRK00846 48 ELIRHLLEDLG 58 (77)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 215
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=28.81 E-value=2.2e+02 Score=20.36 Aligned_cols=35 Identities=14% Similarity=0.021 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc
Q 027314 148 AKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDV 182 (225)
Q Consensus 148 ~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~ 182 (225)
.+++.+++.|...++++..--.-....+.-+...+
T Consensus 5 ~~~~~~l~~L~~~l~~E~~~r~Gaenm~~~~~~~~ 39 (72)
T cd00089 5 SKLQSRLERLEKELSIELKVKEGAENLLRLYSDEK 39 (72)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45566788888888888877656666666666554
No 216
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=28.69 E-value=2.5e+02 Score=20.86 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=9.2
Q ss_pred HhHHHHHhhHHHHHHHHHhHH
Q 027314 194 TNLAVMASKERQYLQQYNNYK 214 (225)
Q Consensus 194 r~~k~L~~K~~Ey~~r~~~~~ 214 (225)
+..+.|..+...+...+..+.
T Consensus 72 ~~~~~l~~q~~~l~~~l~~l~ 92 (127)
T smart00502 72 NKLKVLEQQLESLTQKQEKLS 92 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 217
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=28.68 E-value=2.4e+02 Score=23.79 Aligned_cols=31 Identities=13% Similarity=0.195 Sum_probs=15.2
Q ss_pred HHHhCCCCCChhhHHHHHHHhhhhHHHHHHH
Q 027314 116 ANLLNIRDTELSSFLVAMGDISLRKTAVEEK 146 (225)
Q Consensus 116 A~~L~~~dts~~sl~~ai~dLt~~~~~~e~~ 146 (225)
+..|.+--.-..++...+..+.......+.+
T Consensus 110 ~LfL~l~I~r~~~li~~l~~~~~~~~~~~kq 140 (192)
T PF05529_consen 110 ALFLSLVIRRVHSLIKELIKLEEKLEALKKQ 140 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433334445666666666555444443
No 218
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=28.13 E-value=3.9e+02 Score=23.04 Aligned_cols=38 Identities=11% Similarity=0.236 Sum_probs=29.0
Q ss_pred CchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhhhh
Q 027314 183 APCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIFCY 220 (225)
Q Consensus 183 a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~~~ 220 (225)
.++..-+.+|.+-..-|..|..+|+..-.++...+..=
T Consensus 102 ~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~e 139 (182)
T PF15035_consen 102 EDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSE 139 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 44556667888888889999999998888877665543
No 219
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=28.10 E-value=2.8e+02 Score=25.03 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=34.4
Q ss_pred CChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027314 124 TELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTL 175 (225)
Q Consensus 124 ts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L 175 (225)
|.+-+|...+..|...+..++........+++.|++-...-..+...|+..|
T Consensus 201 tpLP~L~~~~~rL~~~l~~le~~~~~~~~~l~~l~~E~~~I~~re~elq~~l 252 (254)
T PF15458_consen 201 TPLPSLSECLERLRESLSSLEDSKSQLQQQLESLEKEKEEIEEREKELQELL 252 (254)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566788888889999988888888777777777444444344433333333
No 220
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=27.91 E-value=1.9e+02 Score=25.98 Aligned_cols=62 Identities=15% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHH
Q 027314 143 VEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYN 211 (225)
Q Consensus 143 ~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~ 211 (225)
.++++.....++++| +.++.. ....|+.++.++..+..|.++-++.-+-|..+-...++|+.
T Consensus 149 ~~~~~~~~~~~~~kL----~~el~~---~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 149 LEEENDKLKADLEKL----ETELEK---KQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhhHHHHHhhHHHH----HHHHHH---HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
No 221
>PRK04758 hypothetical protein; Validated
Probab=27.90 E-value=1.7e+02 Score=25.32 Aligned_cols=92 Identities=24% Similarity=0.303 Sum_probs=50.0
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCHHHHHHHHHHHHhhHhhhHH--HHHHHH----HHHHHHHHHHhHHHHHHHHHHhccc
Q 027314 23 DVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKA--ANIVAA----DFRQKAAEYRSQAARIREILENVGL 96 (225)
Q Consensus 23 ~V~sWL~~kF~~~~~pVP~FErN~dTl~~L~~LA~~NeaaDee--~~Ll~~----d~~qk~~Ey~aea~~l~elLe~vgl 96 (225)
.-++|+...+...+.+.|.- ...+..||. .+..+-.|.+ -.++.= .+.+.+. +=+.-.+..|-++|+
T Consensus 40 ~~~~W~~~~~~~~~~~~~~~---~~~l~~ly~-~t~~~L~d~~~~f~lLLPdD~~~L~~Ra~---AL~~W~~gFL~G~Gl 112 (181)
T PRK04758 40 DGADWLARILADAGQVAPAQ---GSALDQLRQ-ATVAQLEDRDFAFELLLAEDGAPLAARAD---ALFDWCRAFLGGFGL 112 (181)
T ss_pred CcHHHHHHHHhccCCCchHH---HHHHHHHHH-HHHHHhccCCCeeeeeCCCCCCCHHHHHH---HHHHHHHHHHHHHHh
Confidence 44789999886434443332 345555553 2222222222 222221 0222211 112336667888887
Q ss_pred cc---cCCChhHHHHHHHHHHHHHHhCCC
Q 027314 97 AQ---ESLPSNVVSSAQVLANVANLLNIR 122 (225)
Q Consensus 97 s~---~sLs~~G~~aL~aLa~~A~~L~~~ 122 (225)
.. ..+|.+.+.+|+.|+++| .+++.
T Consensus 113 ~~~~~~~~s~e~~E~L~Dl~~Ia-ql~~d 140 (181)
T PRK04758 113 AAQQRPALSEEGEEALQDLARLA-QASSD 140 (181)
T ss_pred hccccccCCHHHHHHHHHHHHHH-ccCCC
Confidence 54 447889999999999999 55543
No 222
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=27.90 E-value=94 Score=22.12 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=20.0
Q ss_pred HHHHHhhHHHHHHHHHhHHHHhh
Q 027314 196 LAVMASKERQYLQQYNNYKVSIF 218 (225)
Q Consensus 196 ~k~L~~K~~Ey~~r~~~~~~~~~ 218 (225)
.+.+..|..||.+|+..++..+.
T Consensus 51 ~~~~~~k~~eyl~raE~lk~~~~ 73 (77)
T smart00745 51 REAVKAKAAEYLDRAEEIKKSLL 73 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45789999999999999998764
No 223
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=27.87 E-value=99 Score=19.72 Aligned_cols=31 Identities=32% Similarity=0.551 Sum_probs=21.3
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCHHHHHHHHHHHHhh
Q 027314 22 ADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLS 59 (225)
Q Consensus 22 s~V~sWL~~kF~~~~~pVP~FErN~dTl~~L~~LA~~N 59 (225)
+....||.+. |-++|+-- .|-+-|+++|.-|
T Consensus 7 ~~L~~wL~~~----gi~~~~~~---~~rd~Ll~~~k~~ 37 (38)
T PF10281_consen 7 SDLKSWLKSH----GIPVPKSA---KTRDELLKLAKKN 37 (38)
T ss_pred HHHHHHHHHc----CCCCCCCC---CCHHHHHHHHHHh
Confidence 5789999983 56666654 4566777776544
No 224
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=27.81 E-value=4e+02 Score=23.02 Aligned_cols=8 Identities=25% Similarity=0.617 Sum_probs=3.2
Q ss_pred HHHHHhhh
Q 027314 172 KRTLGQLE 179 (225)
Q Consensus 172 k~~L~~Le 179 (225)
+..+..++
T Consensus 131 ~~~~~~~~ 138 (161)
T TIGR02894 131 RQRLSTIE 138 (161)
T ss_pred HHHHHHHH
Confidence 33343344
No 225
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=27.77 E-value=2.6e+02 Score=20.88 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=14.1
Q ss_pred hhhHHHHHHHhhhhHHHHHHHHHH
Q 027314 126 LSSFLVAMGDISLRKTAVEEKRAK 149 (225)
Q Consensus 126 ~~sl~~ai~dLt~~~~~~e~~~~r 149 (225)
+..|..-+-++...++.+.....+
T Consensus 3 ~~~F~~~v~~I~~~I~~i~~~v~~ 26 (117)
T smart00503 3 LDEFFEKVEEIRANIQKISQNVAE 26 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666655554
No 226
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=27.05 E-value=2.9e+02 Score=21.10 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHH
Q 027314 145 EKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENW 192 (225)
Q Consensus 145 ~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew 192 (225)
+.+.++..++..||+-|+.=..+....++.-++|+.+-.-|+.-..+.
T Consensus 16 e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 16 EEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677788889988888888888778888888876644444433333
No 227
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=26.98 E-value=5.5e+02 Score=24.37 Aligned_cols=42 Identities=24% Similarity=0.411 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHhhHhhhHHHHHHHH--HHHHHHHHHHhHHHHHHHHH
Q 027314 45 TSRSVAHLYNLATLSQAKTKAANIVAA--DFRQKAAEYRSQAARIREIL 91 (225)
Q Consensus 45 N~dTl~~L~~LA~~NeaaDee~~Ll~~--d~~qk~~Ey~aea~~l~elL 91 (225)
|..+|.-|+ .+++++...|..+ .++|++.|.+++-+.++.-+
T Consensus 66 ~~~~La~lL-----~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~l 109 (319)
T PF09789_consen 66 ENKNLAQLL-----SESREQNKKLKEEVEELRQKLNEAQGDIKLLREKL 109 (319)
T ss_pred chhhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 545655443 5788888888886 69999999998888877743
No 228
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=26.81 E-value=4.2e+02 Score=22.96 Aligned_cols=17 Identities=6% Similarity=0.247 Sum_probs=7.7
Q ss_pred HHhhHHHHHHHHHhHHH
Q 027314 199 MASKERQYLQQYNNYKV 215 (225)
Q Consensus 199 L~~K~~Ey~~r~~~~~~ 215 (225)
+..=+.||.++...+..
T Consensus 83 l~d~inE~t~k~~El~~ 99 (165)
T PF09602_consen 83 LNDSINEWTDKLNELSA 99 (165)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444455555444443
No 229
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=26.46 E-value=3.7e+02 Score=22.50 Aligned_cols=64 Identities=14% Similarity=0.133 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHH
Q 027314 145 EKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYK 214 (225)
Q Consensus 145 ~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~ 214 (225)
+...+++.|++.|.. -+.+++..-.--+....|..+..-. .-.+...++.+++++..+++++.+
T Consensus 11 eg~~~L~~EL~~L~~-~r~~i~~~i~~Ar~~GDlsENaey~-----aak~~q~~~e~RI~~L~~~L~~A~ 74 (158)
T PRK05892 11 AARDHLEAELARLRA-RRDRLAVEVNDRGMIGDHGDQAEAI-----QRADELARLDDRINELDRRLRTGP 74 (158)
T ss_pred HHHHHHHHHHHHHHH-HhHHHHHHHHHHHhCCCcchhhhHH-----HHHHHHHHHHHHHHHHHHHHHhCE
Confidence 455667778888865 4666554311223334444331112 222345677888888888887643
No 230
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=26.36 E-value=5.6e+02 Score=24.19 Aligned_cols=120 Identities=22% Similarity=0.346 Sum_probs=73.1
Q ss_pred HH-hcccccc---CCCh--hHHHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHhhhhHHHHHHHHHHH------HHHHHHH
Q 027314 91 LE-NVGLAQE---SLPS--NVVSSAQVLANVANLLNIRDT-ELSSFLVAMGDISLRKTAVEEKRAKV------QKESKIL 157 (225)
Q Consensus 91 Le-~vgls~~---sLs~--~G~~aL~aLa~~A~~L~~~dt-s~~sl~~ai~dLt~~~~~~e~~~~r~------~~e~~~L 157 (225)
|| .||.++. .|+. .+..-+.+|-.+...+.+-++ .+..+-..|..|..+..++.+++... +.+|..|
T Consensus 221 LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eL 300 (388)
T PF04912_consen 221 LESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSELEELAEKRKEAKEDAEQESKIDEL 300 (388)
T ss_pred HHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHH
Confidence 44 7777443 2221 244556666666666666544 67888888888887776666554432 2234444
Q ss_pred HHHHHH----------HHHHHHHH----------HHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHH
Q 027314 158 LDYTRK----------AIARLTYL----------KRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQY 210 (225)
Q Consensus 158 ~~~l~k----------~l~~~~~L----------k~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~ 210 (225)
.+.+.+ -+.|+..| -..|..|+....++..++..|...++-+..|..+-...+
T Consensus 301 y~~l~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~i 373 (388)
T PF04912_consen 301 YEILPRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKENMETI 373 (388)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322 22332222 345666666678888899999999998888877766655
No 231
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=26.22 E-value=6.2e+02 Score=24.70 Aligned_cols=25 Identities=8% Similarity=0.284 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHhhcccCCCCCCCC
Q 027314 17 DAARIADVKAWLASQFEASAKEVPAF 42 (225)
Q Consensus 17 ~~~~~s~V~sWL~~kF~~~~~pVP~F 42 (225)
=..|-.+...|++.+||. ...||+.
T Consensus 120 v~skPrEfA~likNkFGS-ADNI~sl 144 (395)
T PF10267_consen 120 VVSKPREFAHLIKNKFGS-ADNISSL 144 (395)
T ss_pred HHhCcHHHHhcccCCCCC-CCccccc
Confidence 345666888999999975 3456665
No 232
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=26.19 E-value=2.8e+02 Score=23.21 Aligned_cols=39 Identities=13% Similarity=0.277 Sum_probs=21.9
Q ss_pred HHHHHhhhc---CcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhH
Q 027314 172 KRTLGQLED---DVAPCEAQMENWKTNLAVMASKERQYLQQYNNY 213 (225)
Q Consensus 172 k~~L~~Le~---~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~ 213 (225)
.++|+.|+. +..++..+..+|+...+ ....+|..+++..
T Consensus 40 d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~---~~~~~~e~~l~~~ 81 (155)
T PF06810_consen 40 DKQIKDLKKSAKDNEELKKQIEELQAKNK---TAKEEYEAKLAQM 81 (155)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 566666665 34566666666665553 2333666666443
No 233
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=26.13 E-value=2.4e+02 Score=20.00 Aligned_cols=27 Identities=11% Similarity=-0.038 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027314 153 ESKILLDYTRKAIARLTYLKRTLGQLE 179 (225)
Q Consensus 153 e~~~L~~~l~k~l~~~~~Lk~~L~~Le 179 (225)
+++.|...+++|..-..-.+..+.-+.
T Consensus 2 ~i~~L~~~i~~E~ki~~Gae~m~~~~~ 28 (70)
T PF02185_consen 2 RIEELQKKIDKELKIKEGAENMLQAYS 28 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 356666677777666544455555443
No 234
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=26.04 E-value=6.5e+02 Score=24.87 Aligned_cols=22 Identities=9% Similarity=0.172 Sum_probs=11.3
Q ss_pred HHHHHhhHHHHHHHHHhHHHHh
Q 027314 196 LAVMASKERQYLQQYNNYKVSI 217 (225)
Q Consensus 196 ~k~L~~K~~Ey~~r~~~~~~~~ 217 (225)
+..+++.+.-.++||+..+..+
T Consensus 316 V~~l~~rI~aLe~QIa~er~kl 337 (434)
T PRK15178 316 IPRLSAKIKVLEKQIGEQRNRL 337 (434)
T ss_pred hhHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555544443
No 235
>PRK11519 tyrosine kinase; Provisional
Probab=25.78 E-value=7.4e+02 Score=25.44 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=17.0
Q ss_pred HHHHHHhhhcCcCc---hHHHHHHHHHhHHHHHhhHHHHHHHH
Q 027314 171 LKRTLGQLEDDVAP---CEAQMENWKTNLAVMASKERQYLQQY 210 (225)
Q Consensus 171 Lk~~L~~Le~~~a~---l~~q~~ew~r~~k~L~~K~~Ey~~r~ 210 (225)
|++++.+++..... .+.+..+.+|..++-..--..+.+|.
T Consensus 351 L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~lY~~lL~r~ 393 (719)
T PRK11519 351 LEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQ 393 (719)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555544322 23333444444444443333333333
No 236
>PRK13879 conjugal transfer protein TrbJ; Provisional
Probab=25.75 E-value=5.2e+02 Score=23.63 Aligned_cols=42 Identities=5% Similarity=-0.086 Sum_probs=28.9
Q ss_pred hCCCCCChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 027314 119 LNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDY 160 (225)
Q Consensus 119 L~~~dts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~ 160 (225)
-|++..+++.+...+...-..+....++...++.+++.++.-
T Consensus 26 agipV~D~an~aqni~~a~~~v~q~~~Qi~Qlq~Qiqqy~nq 67 (253)
T PRK13879 26 AGIPVIDGTNLSQNIMTAIESVAQTLKQIEQYQTQLQQYENM 67 (253)
T ss_pred cCCCeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888999998887776666666666666555555555333
No 237
>PLN02943 aminoacyl-tRNA ligase
Probab=25.66 E-value=2.6e+02 Score=29.93 Aligned_cols=23 Identities=13% Similarity=-0.003 Sum_probs=14.0
Q ss_pred HhHHHHHhhHHHHHHHHHhHHHH
Q 027314 194 TNLAVMASKERQYLQQYNNYKVS 216 (225)
Q Consensus 194 r~~k~L~~K~~Ey~~r~~~~~~~ 216 (225)
.+++-+..|+..+++++++++++
T Consensus 931 ~kl~~~~~~l~~~~~~l~~l~~~ 953 (958)
T PLN02943 931 EKAAEAEEKIKLTKNRLAFLKST 953 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455666666666666666653
No 238
>PRK06798 fliD flagellar capping protein; Validated
Probab=25.64 E-value=1.7e+02 Score=28.45 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=23.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027314 129 FLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLE 179 (225)
Q Consensus 129 l~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le 179 (225)
|...+..|..++..++.++.+++.+++...+.+.++-.. |...|.+|.
T Consensus 377 i~~r~~~l~~~i~~l~~~~~~~e~rl~~~e~~l~~qf~a---le~~ms~ln 424 (440)
T PRK06798 377 IGERSKSIDNRVSKLDLKITDIDTQNKQKQDNIVDKYQK---LESTLAALD 424 (440)
T ss_pred eehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 444444455555555555555555555554444444444 344444444
No 239
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=25.34 E-value=1.4e+02 Score=30.03 Aligned_cols=8 Identities=25% Similarity=0.289 Sum_probs=3.2
Q ss_pred HHHHHhhh
Q 027314 172 KRTLGQLE 179 (225)
Q Consensus 172 k~~L~~Le 179 (225)
++++.++.
T Consensus 44 k~q~~~l~ 51 (489)
T PF11853_consen 44 KAQQDDLN 51 (489)
T ss_pred HHhhcccc
Confidence 44433333
No 240
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.31 E-value=1.9e+02 Score=26.23 Aligned_cols=43 Identities=19% Similarity=0.197 Sum_probs=27.6
Q ss_pred HHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhhh
Q 027314 171 LKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIFC 219 (225)
Q Consensus 171 Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~~ 219 (225)
..+.|++++.++-.+|... ...+..|+++|+.-+..+++-+.+
T Consensus 48 a~ell~qMdlEvr~lp~~~------Rs~~~~KlR~yksdl~~l~~e~k~ 90 (220)
T KOG1666|consen 48 ANELLDQMDLEVRELPPNF------RSSYLSKLREYKSDLKKLKRELKR 90 (220)
T ss_pred HHHHHHHHHHHHHhCCchh------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666654454444 346778888888888877765544
No 241
>KOG0981 consensus DNA topoisomerase I [Replication, recombination and repair]
Probab=25.30 E-value=3.1e+02 Score=28.66 Aligned_cols=65 Identities=23% Similarity=0.237 Sum_probs=45.6
Q ss_pred HHHHHhCCCCCChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHhh
Q 027314 114 NVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKIL---------------LDYTRKAIARLTYLKRTLGQL 178 (225)
Q Consensus 114 ~~A~~L~~~dts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L---------------~~~l~k~l~~~~~Lk~~L~~L 178 (225)
.+|.+-+-.-+-+.++...|-.|+..+.+.+++..+.+.++.-- -...++.+.+ |+++|.+|
T Consensus 619 ~VAIlCNHQR~v~K~h~~smekl~~kI~~~keql~e~~~~l~~ak~~~~~~~~~~~~k~~Ek~~k~~~~---l~eqi~kl 695 (759)
T KOG0981|consen 619 TVAILCNHQRAVSKTHEKSMEKLAEKIKAKKEQLKEAEAELKSAKADEKKQEGSKEKKEVEKKEKKLER---LEEQLKKL 695 (759)
T ss_pred eeeeeecccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHH---HHHHHHHH
Confidence 46777777788888999999999999999988888766655432 1333444444 57777776
Q ss_pred hcC
Q 027314 179 EDD 181 (225)
Q Consensus 179 e~~ 181 (225)
+-+
T Consensus 696 ~~q 698 (759)
T KOG0981|consen 696 EIQ 698 (759)
T ss_pred hhh
Confidence 644
No 242
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=25.25 E-value=2.7e+02 Score=20.18 Aligned_cols=20 Identities=0% Similarity=0.106 Sum_probs=8.7
Q ss_pred HHHHHHHHhHHHHHhhHHHH
Q 027314 187 AQMENWKTNLAVMASKERQY 206 (225)
Q Consensus 187 ~q~~ew~r~~k~L~~K~~Ey 206 (225)
.++.+....++.|.-..+|+
T Consensus 39 ~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 39 KRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444443
No 243
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=24.94 E-value=4.6e+02 Score=22.75 Aligned_cols=35 Identities=9% Similarity=0.108 Sum_probs=17.2
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027314 131 VAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAI 165 (225)
Q Consensus 131 ~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l 165 (225)
.++...-.....++.+..+.+..++.+.++-..++
T Consensus 45 ~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al 79 (219)
T TIGR02977 45 TTSARTIADKKELERRVSRLEAQVADWQEKAELAL 79 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555555544443
No 244
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=24.85 E-value=4.5e+02 Score=23.67 Aligned_cols=54 Identities=17% Similarity=0.126 Sum_probs=35.5
Q ss_pred hhhHHHHHHHhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027314 126 LSSFLVAMGDISLRKT----AVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLE 179 (225)
Q Consensus 126 ~~sl~~ai~dLt~~~~----~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le 179 (225)
.+.+-+.+...|.|+- .+.+..+|.+.++..|.+-+++++.---+-++++.+|-
T Consensus 3 ~EELRq~Ll~TTlELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 3 MEELRQKLLYTTLELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554444 46677788888888888888877766555666666665
No 245
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=24.81 E-value=5e+02 Score=23.09 Aligned_cols=84 Identities=12% Similarity=0.134 Sum_probs=46.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHH
Q 027314 132 AMGDISLRKTAVEEKRAKVQKESKIL---LDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQ 208 (225)
Q Consensus 132 ai~dLt~~~~~~e~~~~r~~~e~~~L---~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~ 208 (225)
.+-||-.....+|++...+..+..-+ +.+|..++.. |++.-.++..+-..+..++.+...+..-|..++.+|..
T Consensus 68 EledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~---Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~ 144 (193)
T PF14662_consen 68 ELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIET---LQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFES 144 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34445555555555555443333222 2333455554 56666666666666667777776677777777766665
Q ss_pred HHHhHHHHhh
Q 027314 209 QYNNYKVSIF 218 (225)
Q Consensus 209 r~~~~~~~~~ 218 (225)
=+..-.+.++
T Consensus 145 l~~~~da~l~ 154 (193)
T PF14662_consen 145 LICQRDAILS 154 (193)
T ss_pred HHHHHHHHHH
Confidence 5554444443
No 246
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=24.70 E-value=6.1e+02 Score=24.09 Aligned_cols=99 Identities=17% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHhhhhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhhcCcCchH
Q 027314 113 ANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKES------KILLDYTRKAIARLTYLKRTLGQLEDDVAPCE 186 (225)
Q Consensus 113 a~~A~~L~~~dts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~------~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~ 186 (225)
+..|-.|.+..|..+.++|.| |+.++|--++-..-+++=+ +.|+.-+..-..++..++.+|+-...+.+.|.
T Consensus 62 ~r~~r~lat~l~~~g~~i~e~--ls~~~~~~~~~~~aa~Rplel~e~Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~ 139 (338)
T KOG3647|consen 62 LRKARELATDLTQRGTTICEM--LSKELLHKESLMSAAQRPLELLEVEKVLKSAIQAIQVRLQSSRAQLNNVASDEAALG 139 (338)
T ss_pred HHHHHHHHhhccccchHHHHH--HHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q ss_pred HHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhhhh
Q 027314 187 AQMENWKTNLAVMASKERQYLQQYNNYKVSIFCY 220 (225)
Q Consensus 187 ~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~~~ 220 (225)
+|..-..+.+ +.-+.|+.++++.=-||
T Consensus 140 ~Kierrk~El-------Er~rkRle~LqsiRP~~ 166 (338)
T KOG3647|consen 140 SKIERRKAEL-------ERTRKRLEALQSIRPAH 166 (338)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHhcchHH
No 247
>PRK02119 hypothetical protein; Provisional
Probab=24.66 E-value=2.9e+02 Score=20.37 Aligned_cols=8 Identities=38% Similarity=0.410 Sum_probs=2.9
Q ss_pred hHHHHHHH
Q 027314 139 RKTAVEEK 146 (225)
Q Consensus 139 ~~~~~e~~ 146 (225)
++.++|.+
T Consensus 10 Ri~~LE~r 17 (73)
T PRK02119 10 RIAELEMK 17 (73)
T ss_pred HHHHHHHH
Confidence 33333333
No 248
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=24.24 E-value=4.4e+02 Score=22.25 Aligned_cols=75 Identities=13% Similarity=0.097 Sum_probs=36.3
Q ss_pred HHhccccccCCChhHHHHHHHHHHHHHHhCC-----CCCChhhHHHHHHHhhhhHHHHH---HHHHHHHHHHHHHHHHHH
Q 027314 91 LENVGLAQESLPSNVVSSAQVLANVANLLNI-----RDTELSSFLVAMGDISLRKTAVE---EKRAKVQKESKILLDYTR 162 (225)
Q Consensus 91 Le~vgls~~sLs~~G~~aL~aLa~~A~~L~~-----~dts~~sl~~ai~dLt~~~~~~e---~~~~r~~~e~~~L~~~l~ 162 (225)
+..+|-++.+ ..-+.++..|+++...++. ...+...|+..|-+...-...+. .+|.++..+++.+.+.+.
T Consensus 68 ~~~la~~E~~--~~l~~~l~~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~ 145 (236)
T PF09325_consen 68 FSQLAKSEEE--KSLSEALSQLAEAFEKISELLEEQANQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQ 145 (236)
T ss_pred HHHhhcccCC--chhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433333 3345556666655544433 23344445555555554444444 445555555555555555
Q ss_pred HHHHH
Q 027314 163 KAIAR 167 (225)
Q Consensus 163 k~l~~ 167 (225)
+.-+.
T Consensus 146 kkk~~ 150 (236)
T PF09325_consen 146 KKKAQ 150 (236)
T ss_pred HHHHH
Confidence 54444
No 249
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=24.15 E-value=6.2e+02 Score=28.60 Aligned_cols=18 Identities=11% Similarity=0.084 Sum_probs=7.3
Q ss_pred HHHHHhhHHHHHHHHHhH
Q 027314 196 LAVMASKERQYLQQYNNY 213 (225)
Q Consensus 196 ~k~L~~K~~Ey~~r~~~~ 213 (225)
.+-+...++++++++...
T Consensus 510 ~~~l~~~~~~~~eele~~ 527 (1317)
T KOG0612|consen 510 KRKLEALVRQLEEELEDA 527 (1317)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444333
No 250
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=24.03 E-value=3.5e+02 Score=21.04 Aligned_cols=25 Identities=0% Similarity=0.068 Sum_probs=12.6
Q ss_pred HHHhHHHHHhhHHHHHHHHHhHHHH
Q 027314 192 WKTNLAVMASKERQYLQQYNNYKVS 216 (225)
Q Consensus 192 w~r~~k~L~~K~~Ey~~r~~~~~~~ 216 (225)
+..-.+++..|+..+..++..++..
T Consensus 84 ~~eA~~~l~~~~~~l~~~~~~l~~~ 108 (126)
T TIGR00293 84 AEEAIEFLKKRIEELEKAIEKLQEA 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555544443
No 251
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=24.00 E-value=6e+02 Score=23.78 Aligned_cols=84 Identities=12% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHH
Q 027314 131 VAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQY 210 (225)
Q Consensus 131 ~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~ 210 (225)
|.|..+..++.+++.+..+ ++..+...+.+.... ++.....++........++..-.+...-+..=.|+|.-.=
T Consensus 282 P~v~~l~~~i~~l~~~l~~---e~~~~~~~~~~~~~~---~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~~~~ 355 (444)
T TIGR03017 282 PQYKRAQAEINSLKSQLNA---EIKKVTSSVGTNSRI---LKQREAELREALENQKAKVLELNRQRDEMSVLQRDVENAQ 355 (444)
T ss_pred cHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHHHhhhh
Q 027314 211 NNYKVSIFCY 220 (225)
Q Consensus 211 ~~~~~~~~~~ 220 (225)
..|..++.|+
T Consensus 356 ~~y~~ll~r~ 365 (444)
T TIGR03017 356 RAYDAAMQRY 365 (444)
T ss_pred HHHHHHHHHH
No 252
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=23.87 E-value=6.4e+02 Score=24.05 Aligned_cols=80 Identities=13% Similarity=0.177 Sum_probs=36.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHH----HHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHH
Q 027314 132 AMGDISLRKTAVEEKRAKVQKESKILLDYTRK---AIA----RLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKER 204 (225)
Q Consensus 132 ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k---~l~----~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~ 204 (225)
...+|..+-.++++..+.-..+++.+.+..++ .|. +++.|+..|++++...+. +=...++-|+.++.
T Consensus 5 EW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~------e~~~~i~~L~~~Ik 78 (330)
T PF07851_consen 5 EWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSA------EERELIEKLEEDIK 78 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCh------hHHHHHHHHHHHHH
Confidence 34556666666666655555555444443333 322 344445555555432111 11222333444555
Q ss_pred HHHHHHHhHHHHh
Q 027314 205 QYLQQYNNYKVSI 217 (225)
Q Consensus 205 Ey~~r~~~~~~~~ 217 (225)
+.+.++...++.|
T Consensus 79 ~r~~~l~DmEa~L 91 (330)
T PF07851_consen 79 ERRCQLFDMEAFL 91 (330)
T ss_pred HHHhhHHHHHhhC
Confidence 5555555555443
No 253
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=23.86 E-value=6.3e+02 Score=23.95 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=32.1
Q ss_pred hCCCCCChhhHH-------HHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 027314 119 LNIRDTELSSFL-------VAMGDISLRKTAVEEKRAKVQKESKILLD 159 (225)
Q Consensus 119 L~~~dts~~sl~-------~ai~dLt~~~~~~e~~~~r~~~e~~~L~~ 159 (225)
-||+.|.|+.|. .+|-+|-+.+-+.+.+....+.||+.|..
T Consensus 49 HGikPP~PEQYLTPLQQKEV~iRHLkakLkes~~~l~dRetEI~eLks 96 (305)
T PF15290_consen 49 HGIKPPNPEQYLTPLQQKEVCIRHLKAKLKESENRLHDRETEIDELKS 96 (305)
T ss_pred CCCCCCCHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 578888888875 57778888888888888877777777743
No 254
>PF02257 RFX_DNA_binding: RFX DNA-binding domain; InterPro: IPR003150 RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DP7_P 2KW3_A.
Probab=23.84 E-value=15 Score=28.22 Aligned_cols=15 Identities=20% Similarity=0.109 Sum_probs=4.4
Q ss_pred HHhCCCCCChhhHHH
Q 027314 117 NLLNIRDTELSSFLV 131 (225)
Q Consensus 117 ~~L~~~dts~~sl~~ 131 (225)
..+++..-++++||.
T Consensus 38 ~~~~~~pln~AsFGK 52 (85)
T PF02257_consen 38 EKNGIKPLNAASFGK 52 (85)
T ss_dssp HHTT-----HHHHHH
T ss_pred HHhCCCCCchHHHHH
Confidence 344444444444443
No 255
>TIGR02791 VirB5 P-type DNA transfer protein VirB5. The VirB5 protein is involved in the type IV DNA secretion systems typified by the Agrobacterium Ti plasmid vir system where it interacts with several other proteins essential for proper pilus formation. VirB5 is homologous to the IncN (N-type) conjugation system protein TraC as well as the P-type protein TrbJ and the F-type protein TraE.
Probab=23.63 E-value=2.8e+02 Score=24.20 Aligned_cols=49 Identities=12% Similarity=0.078 Sum_probs=38.2
Q ss_pred HHHHhCCCCCChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027314 115 VANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRK 163 (225)
Q Consensus 115 ~A~~L~~~dts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k 163 (225)
.+..-|+|..+++.+...+.....++.+..++...++..++.+.+++..
T Consensus 18 ~~~~agipV~D~a~~aq~i~q~~~q~~q~~~q~~ql~~Q~~q~k~~y~s 66 (220)
T TIGR02791 18 SAAVAGIPVTDPASIANALAQAIEQMAALKTQYEQLSEQIEQYKQQYGS 66 (220)
T ss_pred hhhhCCCceeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556789999999999999888888888888888777777766555443
No 256
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=23.53 E-value=8.2e+02 Score=25.16 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=19.9
Q ss_pred HHHHHHhhhcCc---CchHHHHHHHHHhHHHHHhhHHHHHHHHH
Q 027314 171 LKRTLGQLEDDV---APCEAQMENWKTNLAVMASKERQYLQQYN 211 (225)
Q Consensus 171 Lk~~L~~Le~~~---a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~ 211 (225)
|++++++++... +..+.+..+..|..++...--..+.+|..
T Consensus 351 L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~ 394 (726)
T PRK09841 351 LEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQ 394 (726)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555442 33444555555555555544444444443
No 257
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=23.50 E-value=6.2e+02 Score=26.44 Aligned_cols=10 Identities=20% Similarity=0.258 Sum_probs=4.2
Q ss_pred hHHHHHHHHH
Q 027314 63 TKAANIVAAD 72 (225)
Q Consensus 63 Dee~~Ll~~d 72 (225)
|-+|..++.+
T Consensus 341 dH~RDALAAA 350 (652)
T COG2433 341 DHERDALAAA 350 (652)
T ss_pred chHHHHHHHH
Confidence 3444444433
No 258
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=23.37 E-value=2.1e+02 Score=27.93 Aligned_cols=33 Identities=3% Similarity=0.065 Sum_probs=16.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027314 135 DISLRKTAVEEKRAKVQKESKILLDYTRKAIAR 167 (225)
Q Consensus 135 dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~ 167 (225)
.+..++-+++.+..+++.+++.+.+.++++-++
T Consensus 410 ~l~~~i~~l~~~i~~~~~rl~~~e~rl~~qF~a 442 (462)
T PRK08032 410 GVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQ 442 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555554444444444
No 259
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=23.32 E-value=3.2e+02 Score=20.40 Aligned_cols=41 Identities=10% Similarity=0.223 Sum_probs=22.6
Q ss_pred HHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHH
Q 027314 172 KRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVS 216 (225)
Q Consensus 172 k~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~ 216 (225)
|..+..+. +...-.++|...++-|...++--++-+..|+.+
T Consensus 41 r~~i~~lp----gi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~ 81 (83)
T PF07544_consen 41 RAAIRELP----GIDRSVEEQEEEIEELEEQIRKKREVLQKFKER 81 (83)
T ss_pred HHHHHhCC----CccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455444 345556677766666665555555555555443
No 260
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=23.31 E-value=2.8e+02 Score=25.42 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027314 142 AVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLE 179 (225)
Q Consensus 142 ~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le 179 (225)
-+.++..+++.+++.+++...++... |++.|+++.
T Consensus 10 pl~e~l~~~~~~l~~~~~~~~~~~~~---L~~~l~~l~ 44 (304)
T PF02646_consen 10 PLKEQLEKFEKRLEESFEQRSEEFGS---LKEQLKQLS 44 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 34445555555666665555555555 455555554
No 261
>PRK00736 hypothetical protein; Provisional
Probab=23.31 E-value=3e+02 Score=20.00 Aligned_cols=6 Identities=17% Similarity=0.639 Sum_probs=2.1
Q ss_pred HhhhhH
Q 027314 135 DISLRK 140 (225)
Q Consensus 135 dLt~~~ 140 (225)
+|...+
T Consensus 9 ~LE~kl 14 (68)
T PRK00736 9 ELEIRV 14 (68)
T ss_pred HHHHHH
Confidence 333333
No 262
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=23.23 E-value=3.3e+02 Score=20.54 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027314 147 RAKVQKESKILLDYTRKAIAR 167 (225)
Q Consensus 147 ~~r~~~e~~~L~~~l~k~l~~ 167 (225)
..+++...+.|+..-...-.+
T Consensus 24 l~~ln~tn~~L~~~n~~s~~r 44 (88)
T PF10241_consen 24 LGRLNKTNEELLNLNDLSQQR 44 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444454444444444
No 263
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=23.17 E-value=3.9e+02 Score=24.31 Aligned_cols=33 Identities=12% Similarity=0.107 Sum_probs=18.7
Q ss_pred chHHHHH-HHHHhHHHHHhhHHHHHHHHHhHHHH
Q 027314 184 PCEAQME-NWKTNLAVMASKERQYLQQYNNYKVS 216 (225)
Q Consensus 184 ~l~~q~~-ew~r~~k~L~~K~~Ey~~r~~~~~~~ 216 (225)
+++.+++ +|..-.+.++-=.-||+.+..+|+.-
T Consensus 98 ~LE~k~elD~kyi~a~~Kkyq~E~k~k~dsLeK~ 131 (226)
T cd07645 98 ELERKTDLDVKYMTATLKRYQTEHKNKLDSLEKS 131 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444 55555555555566777777777643
No 264
>PHA03332 membrane glycoprotein; Provisional
Probab=23.08 E-value=5.1e+02 Score=28.98 Aligned_cols=16 Identities=25% Similarity=0.252 Sum_probs=9.6
Q ss_pred hhHHHHHHHHHhHHHH
Q 027314 201 SKERQYLQQYNNYKVS 216 (225)
Q Consensus 201 ~K~~Ey~~r~~~~~~~ 216 (225)
.+...|-||+.++-..
T Consensus 979 ~aaalyYQQlnsltnq 994 (1328)
T PHA03332 979 MAAALYYQQLNSLTNQ 994 (1328)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455677777666543
No 265
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=23.07 E-value=2.9e+02 Score=27.72 Aligned_cols=66 Identities=14% Similarity=0.212 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHh
Q 027314 148 AKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSI 217 (225)
Q Consensus 148 ~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~ 217 (225)
.|+.++|..-+..-++.-.+ |+=++.||..+..+-+++-+.++++-.|..-=+-..+|+..|++++
T Consensus 251 KrvRRKIrNK~SAQESRrkK----keYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v 316 (472)
T KOG0709|consen 251 KRVRRKIRNKRSAQESRRKK----KEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLV 316 (472)
T ss_pred HHHHHHHHhhhhhHHHHHhH----hhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 33444555554444444444 6678888888888888888888888888777777778887777765
No 266
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=23.01 E-value=77 Score=32.14 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhHhh
Q 027314 36 AKEVPAFEYTSRSVAHLYNLATLSQAK 62 (225)
Q Consensus 36 ~~pVP~FErN~dTl~~L~~LA~~Neaa 62 (225)
+.|||.|.++|| +++..|+.+|+.-
T Consensus 201 d~~~~~~~vtp~--~i~~~l~~~~e~l 225 (556)
T TIGR03121 201 DDPVPYFGITPR--EIIKGLARANEEL 225 (556)
T ss_pred cCCCCCCCCCHH--HHHHHHHHHHHhc
Confidence 489999999998 5788999999864
No 267
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=22.95 E-value=3e+02 Score=21.68 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhccccccCCChh
Q 027314 83 QAARIREILENVGLAQESLPSN 104 (225)
Q Consensus 83 ea~~l~elLe~vgls~~sLs~~ 104 (225)
+-..+++.++.+. ..+|+.+
T Consensus 28 Di~~Lq~~i~~vt--f~~l~~e 47 (118)
T PF13815_consen 28 DIDTLQENIENVT--FCDLENE 47 (118)
T ss_pred CHHHHHHHHHhcc--eeccChh
Confidence 3456777777654 4555544
No 268
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=22.83 E-value=9.2e+02 Score=25.47 Aligned_cols=86 Identities=10% Similarity=0.152 Sum_probs=52.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHH
Q 027314 136 ISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKV 215 (225)
Q Consensus 136 Lt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~ 215 (225)
..-.-+.+.+....+...+.+|..+.++...+...|++++.-+......+.....-.+..+-..+.|+-++.+.+.-++.
T Consensus 494 ~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~ 573 (698)
T KOG0978|consen 494 ANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQI 573 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566666666777777777777777666777777777666555555555555555555555555555555555
Q ss_pred Hhhhhh
Q 027314 216 SIFCYH 221 (225)
Q Consensus 216 ~~~~~~ 221 (225)
.+..+|
T Consensus 574 ~~ek~~ 579 (698)
T KOG0978|consen 574 ELEKSE 579 (698)
T ss_pred HHHHHH
Confidence 544443
No 269
>PRK10698 phage shock protein PspA; Provisional
Probab=22.77 E-value=5.3e+02 Score=22.69 Aligned_cols=80 Identities=11% Similarity=0.150 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-----HHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHH
Q 027314 138 LRKTAVEEKRAKVQKESKILLDYTRKAIA-------R-----LTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQ 205 (225)
Q Consensus 138 ~~~~~~e~~~~r~~~e~~~L~~~l~k~l~-------~-----~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~E 205 (225)
...-.++.+..+.+.++.....+-+.++. + -....+.+..|+.+......+......++.-|.+|+.+
T Consensus 52 A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~e 131 (222)
T PRK10698 52 AEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSE 131 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555444443332 1 11124445555555555556666666667777777777
Q ss_pred HHHHHHhHHHHh
Q 027314 206 YLQQYNNYKVSI 217 (225)
Q Consensus 206 y~~r~~~~~~~~ 217 (225)
++.+-..|....
T Consensus 132 ak~k~~~L~aR~ 143 (222)
T PRK10698 132 TRARQQALMLRH 143 (222)
T ss_pred HHHHHHHHHHHH
Confidence 776666555443
No 270
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=22.70 E-value=4.5e+02 Score=21.83 Aligned_cols=63 Identities=17% Similarity=0.261 Sum_probs=39.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHH
Q 027314 131 VAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWK 193 (225)
Q Consensus 131 ~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~ 193 (225)
.-+..|..+-.....+..+-..++..|.....+.+..++..++.|..+..+...+.....+..
T Consensus 42 iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~ 104 (177)
T PF13870_consen 42 IDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDRE 104 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666666666677778777777777777777777777655444444444433
No 271
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=22.61 E-value=6.2e+02 Score=23.72 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=17.1
Q ss_pred hhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHH
Q 027314 177 QLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYN 211 (225)
Q Consensus 177 ~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~ 211 (225)
+||+.+-.++.+..+.--.+..|..-..|.+|||.
T Consensus 231 rLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~ 265 (279)
T KOG0837|consen 231 RLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVM 265 (279)
T ss_pred HHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33433444444444444444455555556666654
No 272
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=22.61 E-value=7.8e+02 Score=24.60 Aligned_cols=51 Identities=22% Similarity=0.247 Sum_probs=28.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 027314 130 LVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLED 180 (225)
Q Consensus 130 ~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~ 180 (225)
-..+.++...+..++++...+..+++.|.+.=++.-.....|++...+++.
T Consensus 100 ~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk 150 (560)
T PF06160_consen 100 KQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRK 150 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666666666655555544444445555555443
No 273
>PLN02320 seryl-tRNA synthetase
Probab=22.56 E-value=8e+02 Score=24.72 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=9.8
Q ss_pred HHHHHHhHHHHHhhHHHHHHHHH
Q 027314 189 MENWKTNLAVMASKERQYLQQYN 211 (225)
Q Consensus 189 ~~ew~r~~k~L~~K~~Ey~~r~~ 211 (225)
+.+-...++.|..+..++.+++.
T Consensus 139 ~k~lk~~i~~le~~~~~~~~~l~ 161 (502)
T PLN02320 139 GKNLKEGLVTLEEDLVKLTDELQ 161 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444443
No 274
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=22.55 E-value=4.8e+02 Score=23.84 Aligned_cols=40 Identities=5% Similarity=0.033 Sum_probs=26.7
Q ss_pred cCchHHHHHHHHHhHHHHHhhHHHH-HHHHHhHHHHhhhhh
Q 027314 182 VAPCEAQMENWKTNLAVMASKERQY-LQQYNNYKVSIFCYH 221 (225)
Q Consensus 182 ~a~l~~q~~ew~r~~k~L~~K~~Ey-~~r~~~~~~~~~~~~ 221 (225)
+..+...+..|...+...=.+--++ .+||.=++.+|+-||
T Consensus 195 v~~L~~~~~~w~e~m~~~~d~~Q~~EeeRi~flK~~L~~~~ 235 (258)
T cd07681 195 LEELNRYNPRYMEDMEQAFEICQEAERKRLCFFKEMLLDLH 235 (258)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666666666555555555 358888999999888
No 275
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=22.41 E-value=80 Score=31.92 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=21.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhHhh
Q 027314 36 AKEVPAFEYTSRSVAHLYNLATLSQAK 62 (225)
Q Consensus 36 ~~pVP~FErN~dTl~~L~~LA~~Neaa 62 (225)
+.|||.|+++|| +++..|+.+|+.-
T Consensus 197 d~~~~~~~vtp~--~ii~~l~~~~~~l 221 (541)
T cd01304 197 DDPVPYFDITPR--EILKGLAEANEEL 221 (541)
T ss_pred cCCCCCCCCCHH--HHHHHHHHHHHhc
Confidence 489999999998 5788999999874
No 276
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=22.32 E-value=1.1e+03 Score=26.20 Aligned_cols=170 Identities=12% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHh-ccccccCCChhHHHHHHHHHHHHHHhCCCC
Q 027314 46 SRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQAARIREI-LEN-VGLAQESLPSNVVSSAQVLANVANLLNIRD 123 (225)
Q Consensus 46 ~dTl~~L~~LA~~NeaaDee~~Ll~~d~~qk~~Ey~aea~~l~el-Le~-vgls~~sLs~~G~~aL~aLa~~A~~L~~~d 123 (225)
.+|+.-|-.....+ .+-++-.-.+++.-++..+.+.+-+.+.+- ... -+++...|.+.-....+.|.+....+....
T Consensus 51 ~~tl~~l~~~~~~~-~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~ 129 (1109)
T PRK10929 51 QSALNWLEERKGSL-ERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQ 129 (1109)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred CChhhHHHHHHHhhhhHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHH
Q 027314 124 TELSSFLVAMGDISLRKTAVEEKRAKVQKES-----------KILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENW 192 (225)
Q Consensus 124 ts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~-----------~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew 192 (225)
..+..+..++..+.....+..++.++++.++ +.....+..+.+. ++.++..++.+...-....+=-
T Consensus 130 ~~~~~~~~~l~~~pq~~~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~---l~~~~~~l~~~l~s~~~~~~L~ 206 (1109)
T PRK10929 130 DRAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAA---LKALVDELELAQLSANNRQELA 206 (1109)
T ss_pred hhhHHHHHHHhhchhhHHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHH---HHHHHHHHHHHHhccHHHHHHH
Q ss_pred HHhHHHHHhhHHHHHHHHHhHHHHhhh
Q 027314 193 KTNLAVMASKERQYLQQYNNYKVSIFC 219 (225)
Q Consensus 193 ~r~~k~L~~K~~Ey~~r~~~~~~~~~~ 219 (225)
+-..+.++.|..+-+.++..++..+|.
T Consensus 207 ~~q~dl~~~~~~~l~~~~~~Lq~~in~ 233 (1109)
T PRK10929 207 RLRSELAKKRSQQLDAYLQALRNQLNS 233 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 277
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=22.17 E-value=6.8e+02 Score=23.76 Aligned_cols=50 Identities=14% Similarity=0.170 Sum_probs=37.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 027314 132 AMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDD 181 (225)
Q Consensus 132 ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~ 181 (225)
.-.+|+.-+.++.+++..++.+++.|...+....--...||+++...+..
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~ 115 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVG 115 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhh
Confidence 34556666778888888888899999888877766666678888776643
No 278
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=22.09 E-value=99 Score=26.07 Aligned_cols=30 Identities=10% Similarity=0.085 Sum_probs=21.5
Q ss_pred chHHHHHHHHHhHHHHHhhHHHHHHHHHhH
Q 027314 184 PCEAQMENWKTNLAVMASKERQYLQQYNNY 213 (225)
Q Consensus 184 ~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~ 213 (225)
.+-.+..+|.+++..|++|++.-++.+.+=
T Consensus 84 aL~S~G~sl~~kVtSLea~lEkqqQeLkAd 113 (138)
T PF03954_consen 84 ALSSQGGSLQDKVTSLEAKLEKQQQELKAD 113 (138)
T ss_pred HHHhccccHHhHcccHHHHHHHHHHHHhhh
Confidence 344567778888888888888777777553
No 279
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=22.02 E-value=5.4e+02 Score=22.47 Aligned_cols=63 Identities=11% Similarity=0.087 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhhhh
Q 027314 155 KILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIFCY 220 (225)
Q Consensus 155 ~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~~~ 220 (225)
++....+..+++. |+..+..++......+...+=-.-..+.+..++.....++..++..||+-
T Consensus 149 ~a~~~~l~ae~~~---l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~ 211 (240)
T PF12795_consen 149 EAQRWLLQAELAA---LEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQK 211 (240)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666 56666666655444444444445567788999999999999999998863
No 280
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=21.94 E-value=6.3e+02 Score=23.27 Aligned_cols=14 Identities=0% Similarity=-0.005 Sum_probs=6.8
Q ss_pred HHHHHHHHHhHHHH
Q 027314 203 ERQYLQQYNNYKVS 216 (225)
Q Consensus 203 ~~Ey~~r~~~~~~~ 216 (225)
+.+.+.++..++.+
T Consensus 278 v~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 278 VKRLKAKVDALEKL 291 (325)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555443
No 281
>PRK06798 fliD flagellar capping protein; Validated
Probab=21.90 E-value=1.8e+02 Score=28.35 Aligned_cols=51 Identities=14% Similarity=0.243 Sum_probs=31.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHH
Q 027314 136 ISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQM 189 (225)
Q Consensus 136 Lt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~ 189 (225)
+..+.-.++.+..+++.+++.+...+++.-.+ |.+++..|+.-.+.+.+|.
T Consensus 377 i~~r~~~l~~~i~~l~~~~~~~e~rl~~~e~~---l~~qf~ale~~ms~lnsQ~ 427 (440)
T PRK06798 377 IGERSKSIDNRVSKLDLKITDIDTQNKQKQDN---IVDKYQKLESTLAALDSQL 427 (440)
T ss_pred eehhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 44555566667777777777776666655555 5777777775555555554
No 282
>PF06694 Plant_NMP1: Plant nuclear matrix protein 1 (NMP1); InterPro: IPR010604 This family consists of several plant specific nuclear matrix protein 1 (NMP1) sequences. Nuclear Matrix Protein 1 is a ubiquitously expressed 36 kDa protein, which has no homologues in animals and fungi, but is highly conserved among flowering and non-flowering plants. NMP1 is located both in the cytoplasm and nucleus and that the nuclear fraction is associated with the nuclear matrix. NMP1 is a candidate for a plant-specific structural protein with a function both in the nucleus and cytoplasm [].
Probab=21.61 E-value=7.1e+02 Score=23.85 Aligned_cols=68 Identities=19% Similarity=0.180 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCC-Ch------------hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027314 104 NVVSSAQVLANVANLLNIRDT-EL------------SSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTY 170 (225)
Q Consensus 104 ~G~~aL~aLa~~A~~L~~~dt-s~------------~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~ 170 (225)
++..-++.|+.+|..||+-.| ++ ..|+.-|+|+=--... .+.-.--+-+...|.+..+-.
T Consensus 67 ~~~~R~Q~L~~iA~~LGl~~~~D~e~IqG~~s~e~~~~~l~~IVDlVeas~~-------~~n~e~Sl~eQ~~kD~~LiD~ 139 (325)
T PF06694_consen 67 EEDSRIQYLLEIASFLGLCPTVDIEAIQGKCSYEKRAEFLRLIVDLVEASMY-------ADNPEWSLDEQFAKDIQLIDA 139 (325)
T ss_pred cchHHHHHHHHHHHHhCCccccCHHHHhccCChhHHHHHHHHHHHHHHHHHh-------hcCchhhHHHHHHHHHHHHHH
Confidence 455567888888888887544 22 3356666555422211 111222355555666665555
Q ss_pred HHHHHHhh
Q 027314 171 LKRTLGQL 178 (225)
Q Consensus 171 Lk~~L~~L 178 (225)
|-+.+.++
T Consensus 140 IaE~~~Qv 147 (325)
T PF06694_consen 140 IAEKQQQV 147 (325)
T ss_pred HHHhHHHH
Confidence 55554443
No 283
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=21.58 E-value=3.4e+02 Score=20.00 Aligned_cols=65 Identities=15% Similarity=0.247 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhh
Q 027314 140 KTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIF 218 (225)
Q Consensus 140 ~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~ 218 (225)
+.+=.+++..+..|-+.| .+.-.. +...+++|. +++.+-...+.-++.|+.+....+.+++..+.
T Consensus 7 l~EKDe~Ia~L~eEGekL----Sk~el~---~~~~IKKLr-------~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 7 LAEKDEQIAQLMEEGEKL----SKKELK---LNNTIKKLR-------AKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHhHHHHHHHHHHHHHHH----HHHHHh---hHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444544 222222 255555555 23333333344555666666666666665543
No 284
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=21.41 E-value=5e+02 Score=23.71 Aligned_cols=30 Identities=10% Similarity=0.024 Sum_probs=15.6
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 027314 128 SFLVAMGDISLRKTAVEEKRAKVQKESKIL 157 (225)
Q Consensus 128 sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L 157 (225)
.+...+.+--..+.++.+.++++.+++..|
T Consensus 56 ~~~~~~~~~~~~~~~l~~EN~~Lr~e~~~l 85 (283)
T TIGR00219 56 EVFDGISENLKDVNNLEYENYKLRQELLKK 85 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555666666665555444
No 285
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=21.30 E-value=4e+02 Score=23.15 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHhhhcC
Q 027314 162 RKAIARLTYLKRTLGQLEDD 181 (225)
Q Consensus 162 ~k~l~~~~~Lk~~L~~Le~~ 181 (225)
++++.+++.+...++.|++.
T Consensus 133 ~~~i~~le~~~~~~k~LrnK 152 (171)
T PF04799_consen 133 EKEIQRLEEIQSKSKTLRNK 152 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555544444445544433
No 286
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=21.27 E-value=4.1e+02 Score=28.53 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=11.2
Q ss_pred HHHHhhHHHHHHHHHhHHHHh
Q 027314 197 AVMASKERQYLQQYNNYKVSI 217 (225)
Q Consensus 197 k~L~~K~~Ey~~r~~~~~~~~ 217 (225)
.-+..++..+..++++++.++
T Consensus 974 ~~~~~~l~~l~~~l~~l~~~~ 994 (995)
T PTZ00419 974 DELNEEIKQLEQAIEELKSLL 994 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555566655543
No 287
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=21.20 E-value=75 Score=30.23 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 027314 125 ELSSFLVAMGDISLRKTAVEEKRAKVQKESKIL 157 (225)
Q Consensus 125 s~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L 157 (225)
+++.+-..|.+|+.++.++.-....++-++..|
T Consensus 50 SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sL 82 (326)
T PF04582_consen 50 SVSSLSSTISDLSSDLQDLASSLADMTSELNSL 82 (326)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555544444444
No 288
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=21.14 E-value=4.1e+02 Score=24.27 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=26.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027314 129 FLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLG 176 (225)
Q Consensus 129 l~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~ 176 (225)
.+..+.++..|-.+++++..+++.+.+.+...+++|..+ ||+.|+
T Consensus 64 ~~~~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~r---Lr~LL~ 108 (283)
T TIGR00219 64 NLKDVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVR---LRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhc
Confidence 444455555666666666666655666655556666666 455443
No 289
>TIGR03517 GldM_gliding gliding motility-associated protein GldM. This protein family, GldM, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile. The best conserved region, toward the N-terminus, is centered on a highly hydrobobic probable transmembrane helix. Two paralogs are found in Cytophaga hutchinsonii.
Probab=21.11 E-value=3.4e+02 Score=27.40 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=32.6
Q ss_pred cCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhhh
Q 027314 182 VAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIFC 219 (225)
Q Consensus 182 ~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~~ 219 (225)
..+-|++..+|..+.+-++.+..+|-+-+..+|..|-+
T Consensus 65 ~~~~p~k~~~~~~~A~~vk~~S~~l~~yl~~LK~~i~~ 102 (523)
T TIGR03517 65 VAKAPAKDKQWQESAQKVRTKSDSLYDYMNDLKEEIIR 102 (523)
T ss_pred HHhChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556899999999999999999999999999976643
No 290
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=21.10 E-value=4.5e+02 Score=21.29 Aligned_cols=47 Identities=19% Similarity=0.305 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 027314 108 SAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKES 154 (225)
Q Consensus 108 aL~aLa~~A~~L~~~dts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~ 154 (225)
....+-.+.-.+.-+++...++-..+..|+.+.-.+.+..-++-.+.
T Consensus 14 ~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 14 SVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEEN 60 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555555544444444443333333
No 291
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=21.02 E-value=4.7e+02 Score=21.46 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=7.1
Q ss_pred hhhHHHHH-HHhhhhHHHHHHHHHHH
Q 027314 126 LSSFLVAM-GDISLRKTAVEEKRAKV 150 (225)
Q Consensus 126 ~~sl~~ai-~dLt~~~~~~e~~~~r~ 150 (225)
..||+..- .+..++...+|.+.+++
T Consensus 14 s~sfaA~~~~~v~~~l~~LEae~q~L 39 (126)
T PF09403_consen 14 SISFAATATASVESELNQLEAEYQQL 39 (126)
T ss_dssp ---------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHcccchHHHHHHHHHHHHHHHH
Confidence 33344333 33344444444444433
No 292
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=20.96 E-value=4.8e+02 Score=21.46 Aligned_cols=45 Identities=13% Similarity=0.143 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHH
Q 027314 153 ESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMA 200 (225)
Q Consensus 153 e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~ 200 (225)
++..-=+.+..+... |-..+++.+...+.+-.++.++++..+-..
T Consensus 39 HL~~cA~~Va~~Q~~---L~~riKevd~~~~~l~~~~~erqk~~~k~a 83 (131)
T PF10158_consen 39 HLNQCAEAVAFDQNA---LAKRIKEVDQEIAKLLQQMVERQKRFAKFA 83 (131)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555 455566666555566666666666554443
No 293
>PF12081 GldM_N: GldM N-terminal domain; InterPro: IPR022720 This domain is found in bacteria at the N terminus of the gliding motility-associated protein, GldM. This domain is typically between 169 to 182 amino acids in length. This domain has two completely conserved residues (Y and N) that may be functionally important. GldM, is named for the member from Flavobacterium johnsoniae UW101 Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes [].
Probab=20.96 E-value=5.2e+02 Score=21.92 Aligned_cols=45 Identities=13% Similarity=0.190 Sum_probs=36.5
Q ss_pred HHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhhh
Q 027314 175 LGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIFC 219 (225)
Q Consensus 175 L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~~ 219 (225)
+..|+...+.-|++..+|..+.+-++.|..++..-|..++..|.+
T Consensus 28 ~~~l~~k~~~np~k~~~~~~kA~~vk~~s~~l~~~i~~lK~~l~~ 72 (194)
T PF12081_consen 28 YAALEVKASENPAKYGEWYKKAKQVKKKSDELYAYIEELKEELIK 72 (194)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333433356678899999999999999999999999999977654
No 294
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=20.74 E-value=6.8e+02 Score=23.17 Aligned_cols=99 Identities=9% Similarity=0.140 Sum_probs=54.4
Q ss_pred HHHHhhHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 027314 54 NLATLSQAKTKAANIVAADFRQKAAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAM 133 (225)
Q Consensus 54 ~LA~~NeaaDee~~Ll~~d~~qk~~Ey~aea~~l~elLe~vgls~~sLs~~G~~aL~aLa~~A~~L~~~dts~~sl~~ai 133 (225)
+|..+++.|-+|-..+..|+.+.+..++..-..+......+ +..--.+..+-|.++ ++. .-++..|...+
T Consensus 140 AL~~l~~mR~~EG~~L~~dl~~rl~~i~~~v~~i~~~~p~~------~~~~~~rL~~rl~el---~~~-~id~~Rl~qEv 209 (291)
T TIGR00255 140 ALLDFINMREFEGENLKSDIVQRLDLIEREVKKVRSAMPDI------LQWQRERLKARIEDL---AQE-FLDLNRLEQEA 209 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH------HHHHHHHHHHHHHHH---hcC-CCCHHHHHHHH
Confidence 67788888888888888888887777663222222211100 000111112222222 222 24666677666
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027314 134 GDISLRKTAVEEKRAKVQKESKILLDYTRK 163 (225)
Q Consensus 134 ~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k 163 (225)
.=+ ++..++.+...|++-+++.+...+.+
T Consensus 210 al~-adK~DI~EEl~RL~sHl~~f~~~L~~ 238 (291)
T TIGR00255 210 ALL-AQRIDIAEEIDRLDSHVKEFYNILKK 238 (291)
T ss_pred HHH-HHhcchHHHHHHHHHHHHHHHHHHhc
Confidence 544 45557777777777777776444443
No 295
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=20.67 E-value=3.3e+02 Score=19.58 Aligned_cols=9 Identities=22% Similarity=0.600 Sum_probs=4.4
Q ss_pred HHHHHHhhh
Q 027314 171 LKRTLGQLE 179 (225)
Q Consensus 171 Lk~~L~~Le 179 (225)
+.++|++++
T Consensus 39 ~~~~l~~I~ 47 (71)
T PF10779_consen 39 LNKQLEKIK 47 (71)
T ss_pred HHHHHHHHH
Confidence 444555544
No 296
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=20.61 E-value=1.4e+02 Score=23.90 Aligned_cols=37 Identities=11% Similarity=0.121 Sum_probs=20.3
Q ss_pred HHHHHHHhHHHHHhhHHHHHHHHHhHHHHhhhhhccC
Q 027314 188 QMENWKTNLAVMASKERQYLQQYNNYKVSIFCYHYVG 224 (225)
Q Consensus 188 q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~~~~~~~ 224 (225)
+..+|.++.+.++-=.+...+|....+..+.||-+.|
T Consensus 40 ~i~~~l~~~~~~~~~~~~~~~k~~~~~~~i~kyg~~G 76 (121)
T PF06695_consen 40 KILKWLKRKPWLKKFYEWLEKKAEKKSKKIEKYGFWG 76 (121)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4445555555554444445555555666667776554
No 297
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=20.52 E-value=8.9e+02 Score=24.45 Aligned_cols=9 Identities=22% Similarity=0.545 Sum_probs=5.2
Q ss_pred CCCCCCCCH
Q 027314 38 EVPAFEYTS 46 (225)
Q Consensus 38 pVP~FErN~ 46 (225)
.+-.||..+
T Consensus 316 ~~~~~~~s~ 324 (493)
T KOG0804|consen 316 DSLELEYSP 324 (493)
T ss_pred ceEEeecch
Confidence 344566666
No 298
>smart00592 BRK domain in transcription and CHROMO domain helicases.
Probab=20.48 E-value=51 Score=22.46 Aligned_cols=24 Identities=33% Similarity=0.666 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHhhcccCCCCCCCCCCCHH
Q 027314 16 RDAARIADVKAWLASQFEASAKEVPAFEYTSR 47 (225)
Q Consensus 16 ~~~~~~s~V~sWL~~kF~~~~~pVP~FErN~d 47 (225)
.++-+...+..||..-++ ||+.|+
T Consensus 20 ~~aP~~~~l~~WL~~~p~--------yev~p~ 43 (45)
T smart00592 20 DDAPKAKDLERWLEENPE--------YEVAPR 43 (45)
T ss_pred ccCCcHHHHHHHHhcCCC--------cccCCC
Confidence 455677799999987755 777664
No 299
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=20.39 E-value=1.2e+03 Score=26.01 Aligned_cols=45 Identities=13% Similarity=0.248 Sum_probs=32.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhHhhhHHHHHHHHH--HHHHHHHHH
Q 027314 37 KEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAAD--FRQKAAEYR 81 (225)
Q Consensus 37 ~pVP~FErN~dTl~~L~~LA~~NeaaDee~~Ll~~d--~~qk~~Ey~ 81 (225)
..+|.--+.+++++.+.-=+.+=+.+.+.+.|+.+- ++.+++.|+
T Consensus 245 aer~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lr 291 (1195)
T KOG4643|consen 245 AERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLR 291 (1195)
T ss_pred hhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 345556667888888777777777777778888754 677777776
No 300
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=20.38 E-value=3.6e+02 Score=19.84 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHhhhcC
Q 027314 162 RKAIARLTYLKRTLGQLEDD 181 (225)
Q Consensus 162 ~k~l~~~~~Lk~~L~~Le~~ 181 (225)
..++..+....+.|..+..+
T Consensus 25 ~~~~~~~~~~~~eL~~l~~~ 44 (106)
T PF01920_consen 25 ERQLRELELTLEELEKLDDD 44 (106)
T ss_dssp HHHHHHHHHHHHHHHTSSTT
T ss_pred HHHHHHHHHHHHHHHhCCCc
Confidence 33333333335566666655
No 301
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=20.37 E-value=5.5e+02 Score=22.66 Aligned_cols=40 Identities=15% Similarity=0.157 Sum_probs=28.6
Q ss_pred cCchHHHHHHHHHhHHHHHhhHHHH-HHHHHhHHHHhhhhh
Q 027314 182 VAPCEAQMENWKTNLAVMASKERQY-LQQYNNYKVSIFCYH 221 (225)
Q Consensus 182 ~a~l~~q~~ew~r~~k~L~~K~~Ey-~~r~~~~~~~~~~~~ 221 (225)
...+.....+|...+.-.-.+-.++ .+||.-++..|..||
T Consensus 198 ~~~l~~~~~~~~~~~~~~~~~~Q~~E~~rl~~~k~~l~~y~ 238 (239)
T cd07658 198 CVRLERLRLEWESALRKGLNQYESLEEERLQHLKHSLSQYL 238 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555567777777766555555544 468899999999998
No 302
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=20.31 E-value=1.9e+02 Score=20.79 Aligned_cols=31 Identities=10% Similarity=0.333 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027314 142 AVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLE 179 (225)
Q Consensus 142 ~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le 179 (225)
++|.+..+++-.+.++ ++++.. |++.+++++
T Consensus 4 elEn~~~~~~~~i~tv----k~en~~---i~~~ve~i~ 34 (55)
T PF05377_consen 4 ELENELPRIESSINTV----KKENEE---ISESVEKIE 34 (55)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHH---HHHHHHHHH
Confidence 4444444433333333 444433 344444444
No 303
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=20.29 E-value=7.3e+02 Score=24.75 Aligned_cols=80 Identities=9% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhH
Q 027314 134 GDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNY 213 (225)
Q Consensus 134 ~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~ 213 (225)
..+..+..+.+++..+.+.++..-.+.|++....+..-++.|.+-+.+.........+......-+..+..+-.++++.+
T Consensus 65 ~Ele~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~l 144 (514)
T TIGR03319 65 AELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGL 144 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
No 304
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=20.25 E-value=2.2e+02 Score=26.51 Aligned_cols=9 Identities=22% Similarity=0.530 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 027314 73 FRQKAAEYR 81 (225)
Q Consensus 73 ~~qk~~Ey~ 81 (225)
+-+.+..|.
T Consensus 155 Fl~~L~~fd 163 (344)
T PF12777_consen 155 FLQRLKNFD 163 (344)
T ss_dssp HHHHHHHS-
T ss_pred HHHHHHhhc
Confidence 333344443
No 305
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=20.25 E-value=1.7e+02 Score=27.94 Aligned_cols=52 Identities=19% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhhhhh
Q 027314 166 ARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIFCYH 221 (225)
Q Consensus 166 ~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~~~~ 221 (225)
..+..|++.+.+++.+...+..+..+-. --..|..++.+|+++++..+...+
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~ 293 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAE 293 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHH
No 306
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=20.05 E-value=2.9e+02 Score=19.92 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHh
Q 027314 149 KVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTN 195 (225)
Q Consensus 149 r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~ 195 (225)
.++.++..|.+.++..+..-....+.+.-||.|...+..-|.-..++
T Consensus 5 ~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~mv~L~kK 51 (57)
T PF02346_consen 5 DIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYMVILAKK 51 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666777777777666666777777777755555444444433
Done!