Query 027314
Match_columns 225
No_of_seqs 82 out of 84
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 13:11:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027314.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027314hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k48_A Nucleoprotein; viral pr 89.7 3.5 0.00012 32.1 9.8 67 145-214 35-102 (107)
2 3tnu_A Keratin, type I cytoske 85.1 12 0.0004 29.2 10.9 96 119-218 33-129 (131)
3 2ic6_A Nucleocapsid protein; h 84.7 9.6 0.00033 28.1 9.3 65 146-213 6-71 (78)
4 4fi5_A Nucleoprotein; structur 83.9 8.3 0.00028 30.3 9.1 64 148-214 25-89 (113)
5 2ic9_A Nucleocapsid protein; h 83.2 10 0.00034 29.0 9.1 65 147-214 7-72 (96)
6 3tnu_B Keratin, type II cytosk 82.3 11 0.00039 29.1 9.5 90 124-217 36-126 (129)
7 1m1j_B Fibrinogen beta chain; 81.8 15 0.00053 34.8 11.9 27 192-218 166-192 (464)
8 3na7_A HP0958; flagellar bioge 81.3 24 0.00083 30.0 18.3 98 124-224 90-192 (256)
9 3ghg_A Fibrinogen alpha chain; 80.2 5.5 0.00019 38.7 8.2 90 128-217 61-154 (562)
10 3hnw_A Uncharacterized protein 78.6 23 0.00079 28.1 11.8 71 134-218 64-134 (138)
11 2jee_A YIIU; FTSZ, septum, coi 78.3 11 0.00038 27.9 7.7 64 155-218 9-72 (81)
12 3u1c_A Tropomyosin alpha-1 cha 77.1 19 0.00064 27.0 8.9 64 152-215 9-72 (101)
13 1ic2_A Tropomyosin alpha chain 75.9 18 0.00062 25.9 8.3 68 151-218 5-72 (81)
14 3hnw_A Uncharacterized protein 75.8 28 0.00096 27.6 10.9 65 129-193 66-130 (138)
15 1deq_A Fibrinogen (alpha chain 74.2 22 0.00074 33.2 10.2 91 127-217 63-157 (390)
16 3u59_A Tropomyosin beta chain; 73.9 22 0.00076 26.4 8.6 91 127-217 5-95 (101)
17 2v4h_A NF-kappa-B essential mo 73.5 30 0.001 26.9 10.8 77 132-219 25-108 (110)
18 2qyw_A Vesicle transport throu 70.9 27 0.00094 26.1 8.5 42 170-217 60-101 (102)
19 3swk_A Vimentin; cytoskeleton, 70.2 29 0.001 25.4 9.8 73 128-200 4-83 (86)
20 3onj_A T-snare VTI1; helix, HA 70.1 13 0.00044 27.7 6.4 43 171-219 46-91 (97)
21 1vcs_A Vesicle transport throu 66.1 10 0.00036 28.4 5.2 43 171-219 50-92 (102)
22 3vkg_A Dynein heavy chain, cyt 66.0 84 0.0029 36.6 14.4 34 142-175 2032-2065(3245)
23 3cve_A Homer protein homolog 1 65.6 32 0.0011 24.8 7.4 56 135-207 4-59 (72)
24 3ol1_A Vimentin; structural ge 65.5 44 0.0015 25.6 9.3 73 128-200 17-103 (119)
25 2efr_A General control protein 64.3 57 0.002 26.5 11.9 81 136-216 61-141 (155)
26 1x8y_A Lamin A/C; structural p 64.3 21 0.00072 26.0 6.5 41 171-218 40-80 (86)
27 3na7_A HP0958; flagellar bioge 62.6 71 0.0024 27.0 12.4 7 49-55 7-13 (256)
28 3cvf_A Homer-3, homer protein 60.2 48 0.0016 24.3 7.8 56 134-206 9-64 (79)
29 3cve_A Homer protein homolog 1 59.3 47 0.0016 23.9 9.4 52 129-180 19-70 (72)
30 1xaw_A Occludin; coiled-coil, 58.8 59 0.002 26.2 8.7 68 153-220 60-135 (140)
31 3o0z_A RHO-associated protein 57.7 81 0.0028 26.1 11.6 34 132-165 49-82 (168)
32 3mq7_A Bone marrow stromal ant 56.9 53 0.0018 26.0 7.9 49 131-179 53-105 (121)
33 3he5_A Synzip1; heterodimeric 56.6 40 0.0014 22.2 6.6 23 151-176 26-48 (49)
34 2ke4_A CDC42-interacting prote 56.6 61 0.0021 24.4 10.2 71 144-214 14-89 (98)
35 3u59_A Tropomyosin beta chain; 56.2 58 0.002 24.1 12.2 69 149-217 6-74 (101)
36 2l5g_B Putative uncharacterize 55.9 27 0.00093 22.9 5.1 31 142-179 6-36 (42)
37 1deq_A Fibrinogen (alpha chain 55.1 91 0.0031 29.1 10.4 43 172-214 98-140 (390)
38 3cvf_A Homer-3, homer protein 54.6 60 0.0021 23.7 8.8 53 129-181 25-77 (79)
39 2v71_A Nuclear distribution pr 53.4 1E+02 0.0034 25.9 10.4 80 129-211 61-140 (189)
40 2b9c_A Striated-muscle alpha t 53.4 85 0.0029 25.1 9.5 71 142-212 28-98 (147)
41 3qne_A Seryl-tRNA synthetase, 53.0 1E+02 0.0035 29.2 10.7 65 139-210 34-101 (485)
42 1gk4_A Vimentin; intermediate 52.7 62 0.0021 23.3 9.4 41 171-218 38-78 (84)
43 2dq0_A Seryl-tRNA synthetase; 52.6 1.2E+02 0.0041 28.2 11.0 65 139-210 32-99 (455)
44 1l8d_A DNA double-strand break 52.5 66 0.0022 23.5 10.0 13 169-181 34-46 (112)
45 1i84_S Smooth muscle myosin he 52.4 37 0.0013 35.1 8.1 7 24-30 752-758 (1184)
46 1m1j_A Fibrinogen alpha subuni 51.9 95 0.0033 29.7 10.1 88 129-216 63-154 (491)
47 1ik9_A DNA repair protein XRCC 51.2 1.1E+02 0.0038 25.8 10.1 13 200-212 188-200 (213)
48 2ocy_A RAB guanine nucleotide 50.1 1E+02 0.0035 25.1 9.6 29 151-179 114-142 (154)
49 3q8t_A Beclin-1; autophagy, AT 49.7 77 0.0026 23.5 8.1 12 202-213 68-79 (96)
50 2lw1_A ABC transporter ATP-bin 49.2 49 0.0017 23.9 6.3 29 187-215 56-84 (89)
51 3f1i_H Hepatocyte growth facto 48.7 49 0.0017 25.3 6.2 55 122-180 32-86 (98)
52 3mov_A Lamin-B1; LMNB1, B-type 48.7 39 0.0013 25.3 5.7 77 132-218 13-89 (95)
53 1m1j_C Fibrinogen gamma chain; 48.0 1.5E+02 0.0051 27.5 10.8 43 173-215 91-133 (409)
54 1t3j_A Mitofusin 1; coiled coi 47.8 88 0.003 23.7 7.7 56 145-214 36-91 (96)
55 3s4r_A Vimentin; alpha-helix, 47.5 82 0.0028 23.2 7.3 21 140-160 25-45 (93)
56 2zvf_A Alanyl-tRNA synthetase; 47.0 77 0.0026 24.7 7.6 53 159-214 7-59 (171)
57 2xdj_A Uncharacterized protein 46.7 82 0.0028 23.0 7.4 40 171-210 25-64 (83)
58 2e7s_A RAB guanine nucleotide 46.3 46 0.0016 26.7 6.1 16 128-143 71-86 (135)
59 3ghg_A Fibrinogen alpha chain; 45.8 45 0.0015 32.5 6.9 29 191-219 114-142 (562)
60 4a5x_A MITD1, MIT domain-conta 44.9 22 0.00075 25.9 3.7 24 196-219 59-82 (86)
61 3o0z_A RHO-associated protein 44.4 70 0.0024 26.5 7.1 49 171-219 60-108 (168)
62 2dfs_A Myosin-5A; myosin-V, in 43.5 2.3E+02 0.0079 29.3 12.3 9 149-157 988-996 (1080)
63 2fxo_A Myosin heavy chain, car 43.5 1.1E+02 0.0037 23.5 9.4 46 171-216 81-126 (129)
64 1i6z_A BAG-family molecular ch 43.2 1.2E+02 0.004 24.3 8.1 50 169-220 73-122 (135)
65 2dq3_A Seryl-tRNA synthetase; 43.1 1E+02 0.0035 28.3 8.9 67 139-212 31-100 (425)
66 2v6x_A Vacuolar protein sortin 43.0 25 0.00085 25.0 3.7 24 196-219 56-79 (85)
67 1m1j_C Fibrinogen gamma chain; 42.3 2.1E+02 0.0073 26.5 12.1 91 85-181 41-134 (409)
68 3iv1_A Tumor susceptibility ge 41.7 1E+02 0.0034 22.5 7.4 26 183-208 49-74 (78)
69 3bas_A Myosin heavy chain, str 41.1 1E+02 0.0034 22.4 9.6 46 143-188 12-57 (89)
70 1s94_A S-syntaxin; three helix 41.0 1.1E+02 0.0037 24.3 7.8 29 122-150 34-62 (180)
71 3iox_A AGI/II, PA; alpha helix 40.7 2.3E+02 0.0077 27.3 10.9 33 187-219 66-98 (497)
72 2w2u_A Hypothetical P60 katani 40.5 18 0.0006 26.3 2.6 22 196-217 62-83 (83)
73 3qh9_A Liprin-beta-2; coiled-c 39.1 81 0.0028 23.3 6.0 48 125-179 20-67 (81)
74 3tnu_A Keratin, type I cytoske 37.7 1.4E+02 0.0047 22.9 8.9 36 138-180 38-73 (131)
75 2dfs_A Myosin-5A; myosin-V, in 36.9 1.5E+02 0.0052 30.6 9.8 25 133-157 986-1010(1080)
76 4etp_A Kinesin-like protein KA 36.9 1.3E+02 0.0043 27.5 8.4 57 125-181 4-60 (403)
77 1pxq_A Subtilisin A; thioether 36.3 15 0.0005 22.9 1.3 10 36-45 16-25 (35)
78 2ykt_A Brain-specific angiogen 36.1 2.1E+02 0.0071 24.6 12.0 42 102-144 49-90 (253)
79 1wfd_A Hypothetical protein 15 35.3 37 0.0013 24.8 3.7 25 196-220 58-82 (93)
80 3vkg_A Dynein heavy chain, cyt 35.3 3.1E+02 0.011 32.2 12.5 8 172-179 2034-2041(3245)
81 3cl3_D NF-kappa-B essential mo 34.8 48 0.0016 26.5 4.5 85 131-215 2-90 (130)
82 3tnu_B Keratin, type II cytosk 34.5 1.5E+02 0.0052 22.6 9.8 37 137-180 35-71 (129)
83 2cpt_A SKD1 protein, vacuolar 34.2 34 0.0012 26.3 3.5 24 196-219 62-85 (117)
84 3lss_A Seryl-tRNA synthetase; 33.0 2.3E+02 0.0078 26.8 9.6 23 196-218 113-135 (484)
85 3efg_A Protein SLYX homolog; x 32.2 1.4E+02 0.0047 21.4 7.3 9 171-179 47-55 (78)
86 2eqb_B RAB guanine nucleotide 32.2 1.6E+02 0.0056 22.2 9.8 59 129-187 3-61 (97)
87 1wle_A Seryl-tRNA synthetase; 31.8 1.6E+02 0.0054 27.9 8.3 22 196-217 125-146 (501)
88 1cxz_B Protein (PKN); protein- 31.7 1.2E+02 0.004 22.5 5.9 62 154-215 23-84 (86)
89 2v6y_A AAA family ATPase, P60 31.7 23 0.00078 25.5 2.0 22 196-217 54-75 (83)
90 3gp4_A Transcriptional regulat 31.6 1.6E+02 0.0054 22.7 7.1 35 186-220 94-128 (142)
91 2v71_A Nuclear distribution pr 30.5 2.4E+02 0.0082 23.6 11.4 36 132-167 25-60 (189)
92 3plt_A Sphingolipid long chain 29.4 2.8E+02 0.0095 24.0 10.1 51 45-95 18-72 (234)
93 3gpv_A Transcriptional regulat 28.6 1.7E+02 0.006 22.6 6.9 25 187-211 109-133 (148)
94 3mud_A DNA repair protein XRCC 27.6 2.4E+02 0.0083 23.4 7.8 50 122-177 118-167 (175)
95 3s84_A Apolipoprotein A-IV; fo 27.5 1.5E+02 0.0052 25.6 6.9 9 195-203 89-97 (273)
96 3efg_A Protein SLYX homolog; x 27.4 74 0.0025 22.9 4.1 36 172-207 27-62 (78)
97 1xaw_A Occludin; coiled-coil, 26.7 1.9E+02 0.0066 23.1 6.8 17 65-81 46-62 (140)
98 1m1j_A Fibrinogen alpha subuni 26.6 2.5E+02 0.0084 26.9 8.5 75 140-217 67-141 (491)
99 3swy_A Cyclic nucleotide-gated 26.5 1.4E+02 0.0048 19.6 6.1 25 142-166 2-26 (46)
100 3htk_A Structural maintenance 26.3 1.4E+02 0.0048 19.5 5.8 22 196-217 35-56 (60)
101 2yy0_A C-MYC-binding protein; 26.2 96 0.0033 20.7 4.2 36 185-220 17-52 (53)
102 2cg5_B Fatty acid synthase; tr 25.9 25 0.00084 25.9 1.3 44 16-62 38-81 (91)
103 3o6q_B Stage II sporulation pr 25.6 30 0.001 23.9 1.6 17 37-53 26-42 (56)
104 1zww_A SH3-containing GRB2-lik 25.4 2.9E+02 0.01 23.0 12.2 37 187-223 192-228 (256)
105 1m1j_B Fibrinogen beta chain; 25.0 4.4E+02 0.015 24.9 10.7 19 195-213 176-194 (464)
106 3he5_B Synzip2; heterodimeric 24.3 96 0.0033 20.6 3.8 8 160-167 7-14 (52)
107 4e61_A Protein BIM1; EB1-like 24.0 1.8E+02 0.0063 22.3 6.0 16 193-208 38-53 (106)
108 1ez3_A Syntaxin-1A; three heli 23.9 2.2E+02 0.0074 20.9 8.3 26 124-149 5-30 (127)
109 1q08_A Zn(II)-responsive regul 22.5 2E+02 0.0069 20.0 6.6 27 194-220 46-72 (99)
110 2avr_X Adhesion A; antiparalle 22.3 2.8E+02 0.0097 21.7 10.7 44 124-167 2-45 (119)
111 1lwu_C Fibrinogen gamma chain; 22.1 2.6E+02 0.0088 25.1 7.5 28 153-180 27-54 (323)
112 2d1l_A Metastasis suppressor p 22.1 3.8E+02 0.013 23.1 14.5 43 102-144 51-93 (253)
113 3gp4_A Transcriptional regulat 21.8 1.7E+02 0.0059 22.5 5.6 8 92-99 23-30 (142)
114 3hd7_A Vesicle-associated memb 21.7 2.3E+02 0.008 20.4 6.7 21 156-180 20-40 (91)
115 3m9b_A Proteasome-associated A 21.6 1.2E+02 0.0041 26.6 5.0 43 133-182 56-98 (251)
116 4emc_A Monopolin complex subun 21.5 1.3E+02 0.0045 25.4 5.1 25 133-157 22-46 (190)
117 3m91_A Proteasome-associated A 21.2 1.9E+02 0.0066 19.3 6.7 42 131-179 9-50 (51)
118 2z5i_A TM, general control pro 21.1 1.9E+02 0.0064 19.2 6.9 38 141-178 8-45 (52)
119 1a31_A Protein (topoisomerase 21.0 35 0.0012 33.5 1.6 71 87-157 424-494 (591)
120 3swf_A CGMP-gated cation chann 21.0 2E+02 0.0069 20.8 5.3 21 143-163 5-25 (74)
121 2nrj_A HBL B protein; enteroto 20.9 4.4E+02 0.015 23.4 11.2 40 125-164 117-156 (346)
122 1hjb_A Ccaat/enhancer binding 20.8 2.2E+02 0.0075 20.9 5.6 16 141-156 46-61 (87)
123 2pnv_A Small conductance calci 20.8 1.8E+02 0.0062 18.8 4.9 24 134-157 12-35 (43)
124 2ykt_A Brain-specific angiogen 20.4 3.1E+02 0.011 23.5 7.5 20 201-220 162-181 (253)
125 1lwu_C Fibrinogen gamma chain; 20.1 1.2E+02 0.004 27.3 4.8 17 199-215 38-54 (323)
No 1
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=89.67 E-value=3.5 Score=32.13 Aligned_cols=67 Identities=12% Similarity=0.076 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHH-HHHhHHHHHhhHHHHHHHHHhHH
Q 027314 145 EKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMEN-WKTNLAVMASKERQYLQQYNNYK 214 (225)
Q Consensus 145 ~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~e-w~r~~k~L~~K~~Ey~~r~~~~~ 214 (225)
....+++.++......|..+..+ |++.-+.++.+|.+...++.. ++--+..+.+|+.|++.+++..-
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQK---LkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQK---LKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777777777778778 688889999998888766554 44557889999999999987643
No 2
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=85.09 E-value=12 Score=29.15 Aligned_cols=96 Identities=15% Similarity=0.239 Sum_probs=56.8
Q ss_pred hCCCCCChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhH-H
Q 027314 119 LNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNL-A 197 (225)
Q Consensus 119 L~~~dts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~-k 197 (225)
++..-+++..+-..|..|+.++..+..++.-++..+..+......++.. ++..|..|+.+.......|....+.- .
T Consensus 33 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~---~q~~i~~lE~eL~~~r~em~~ql~EYq~ 109 (131)
T 3tnu_A 33 VQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQ---IQEMIGSVEEQLAQLRCEMEQQNQEYKI 109 (131)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566777888888888888888888777777777776666666655 46666666655544444454443332 4
Q ss_pred HHHhhHHHHHHHHHhHHHHhh
Q 027314 198 VMASKERQYLQQYNNYKVSIF 218 (225)
Q Consensus 198 ~L~~K~~Ey~~r~~~~~~~~~ 218 (225)
.|..|.. ..-.|++|.++|.
T Consensus 110 Ll~vKl~-Ld~EIatYRkLLE 129 (131)
T 3tnu_A 110 LLDVKTR-LEQEIATYRRLLE 129 (131)
T ss_dssp HHHHHHH-HHHHHHHHHHHTT
T ss_pred HHHHHHH-HHHHHHHHHHhHC
Confidence 5666653 3445677776663
No 3
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=84.71 E-value=9.6 Score=28.10 Aligned_cols=65 Identities=11% Similarity=0.088 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHH-HHHhHHHHHhhHHHHHHHHHhH
Q 027314 146 KRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMEN-WKTNLAVMASKERQYLQQYNNY 213 (225)
Q Consensus 146 ~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~e-w~r~~k~L~~K~~Ey~~r~~~~ 213 (225)
...+++.++......|..+..+ |++.-..++.+|.+...++-. ++--+..+..|+.|++.+++..
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QK---LkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~ 71 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQK---LKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADL 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777888888 688889999998888766554 4445788999999999888754
No 4
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=83.87 E-value=8.3 Score=30.27 Aligned_cols=64 Identities=13% Similarity=0.044 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHH-HHHhHHHHHhhHHHHHHHHHhHH
Q 027314 148 AKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMEN-WKTNLAVMASKERQYLQQYNNYK 214 (225)
Q Consensus 148 ~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~e-w~r~~k~L~~K~~Ey~~r~~~~~ 214 (225)
.+++.++......|..+..+ |++.-..++-+|.+...++.. ++--+..+..|+.|++.+++..-
T Consensus 25 eeLq~Ei~~~E~QL~~ArQK---LkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~v 89 (113)
T 4fi5_A 25 EELQREINAHEGQLVIARQK---VRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRI 89 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666777777 588888899998888766554 44457889999999999987653
No 5
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=83.23 E-value=10 Score=29.05 Aligned_cols=65 Identities=11% Similarity=0.077 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHH-HHHhHHHHHhhHHHHHHHHHhHH
Q 027314 147 RAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMEN-WKTNLAVMASKERQYLQQYNNYK 214 (225)
Q Consensus 147 ~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~e-w~r~~k~L~~K~~Ey~~r~~~~~ 214 (225)
..+++.++......|..+..+ |+..-..++.+|.+...++.. ++--+..|..|+.|++.+++..-
T Consensus 7 i~eLq~e~~~~E~QL~~A~QK---LkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v 72 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQK---LKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLI 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777778778 688889999998888766554 44457889999999999987643
No 6
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.34 E-value=11 Score=29.11 Aligned_cols=90 Identities=14% Similarity=0.171 Sum_probs=52.9
Q ss_pred CChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhH-HHHHhh
Q 027314 124 TELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNL-AVMASK 202 (225)
Q Consensus 124 ts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~-k~L~~K 202 (225)
+++..+-+.|..|+.++..+..++.-++..+.........++.. ++..|..|+.+.......|....+.- ..|..|
T Consensus 36 ~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~---~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvK 112 (129)
T 3tnu_B 36 HEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKD---ARNKLAELEEALQKAKQDMARLLREYQELMNTK 112 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777788777777777777777766666655555554 35555555555444444444433332 355556
Q ss_pred HHHHHHHHHhHHHHh
Q 027314 203 ERQYLQQYNNYKVSI 217 (225)
Q Consensus 203 ~~Ey~~r~~~~~~~~ 217 (225)
.. ..--|++|.++|
T Consensus 113 l~-Ld~EIatYRkLL 126 (129)
T 3tnu_B 113 LA-LDVEIATYRKLL 126 (129)
T ss_dssp HH-HHHHHHHHHHTT
T ss_pred HH-HHHHHHHHHHhH
Confidence 43 234466666665
No 7
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=81.83 E-value=15 Score=34.83 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=21.5
Q ss_pred HHHhHHHHHhhHHHHHHHHHhHHHHhh
Q 027314 192 WKTNLAVMASKERQYLQQYNNYKVSIF 218 (225)
Q Consensus 192 w~r~~k~L~~K~~Ey~~r~~~~~~~~~ 218 (225)
...++..|..++.++..+|.+++..+.
T Consensus 166 ~~~~i~~L~~~~~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 166 IPSSLRVLRAVIDSLHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888887664
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=81.34 E-value=24 Score=30.00 Aligned_cols=98 Identities=15% Similarity=0.124 Sum_probs=66.4
Q ss_pred CChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhH
Q 027314 124 TELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKE 203 (225)
Q Consensus 124 ts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~ 203 (225)
-+...+...|-.+..+...+++...++..+++.+...+...-..+..++..|...+ +.+...+.+-......+..+.
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~---~~~~~~~~e~~~e~~~l~~~r 166 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELE---SLVENEVKNIKETQQIIFKKK 166 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 36777888888888888888888888777787776666666666655666666666 445555555556666666666
Q ss_pred HHHHHHH-----HhHHHHhhhhhccC
Q 027314 204 RQYLQQY-----NNYKVSIFCYHYVG 224 (225)
Q Consensus 204 ~Ey~~r~-----~~~~~~~~~~~~~~ 224 (225)
.++...+ +.|+++-.+++-+|
T Consensus 167 ~~l~~~i~~~lL~~Yerir~~~~g~a 192 (256)
T 3na7_A 167 EDLVEKTEPKIYSFYERIRRWAKNTS 192 (256)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHGGGS
T ss_pred HHHHhcCCHHHHHHHHHHHHhCCCce
Confidence 6666553 66776665555554
No 9
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=80.15 E-value=5.5 Score=38.74 Aligned_cols=90 Identities=9% Similarity=0.142 Sum_probs=65.1
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhcCcCchHHHHHHHHHhHHHHHhhH
Q 027314 128 SFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLG----QLEDDVAPCEAQMENWKTNLAVMASKE 203 (225)
Q Consensus 128 sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~----~Le~~~a~l~~q~~ew~r~~k~L~~K~ 203 (225)
+|-..|++|..+++++++.+..++.-.+.+-+++++.+........... +|+.+...++.++.+...+++.|.+=+
T Consensus 61 DltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnL 140 (562)
T 3ghg_A 61 DFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNV 140 (562)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778899999999999888888888888888888777666422222111 444445666677778888888888888
Q ss_pred HHHHHHHHhHHHHh
Q 027314 204 RQYLQQYNNYKVSI 217 (225)
Q Consensus 204 ~Ey~~r~~~~~~~~ 217 (225)
++-+.+|..|+.-|
T Consensus 141 edq~~kIQRLEvDI 154 (562)
T 3ghg_A 141 RAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887777543
No 10
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=78.63 E-value=23 Score=28.13 Aligned_cols=71 Identities=13% Similarity=0.086 Sum_probs=42.9
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhH
Q 027314 134 GDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNY 213 (225)
Q Consensus 134 ~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~ 213 (225)
+++.-++|.+.++...++.+++.+ .+++.. |+..|.+++ -+..+-.+...=+..+..+.+.++..+
T Consensus 64 LNiadEl~k~~~~~~~L~~~l~~~----~kE~~~---lK~el~~~~-------~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 64 LNIADDYFKAKKMADSLSLDIENK----DKEIYD---LKHELIAAQ-------IKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777665555555 555555 355555544 445555555666666666677777666
Q ss_pred HHHhh
Q 027314 214 KVSIF 218 (225)
Q Consensus 214 ~~~~~ 218 (225)
++-++
T Consensus 130 e~~~~ 134 (138)
T 3hnw_A 130 ETELN 134 (138)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 11
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=78.33 E-value=11 Score=27.91 Aligned_cols=64 Identities=14% Similarity=0.221 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhh
Q 027314 155 KILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIF 218 (225)
Q Consensus 155 ~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~ 218 (225)
+.|..++..++..++-|+..+++|+..-..+..+..+-..+...|.....+.++..++++..|.
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666788888888777777777888778888888888888888888877664
No 12
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=77.10 E-value=19 Score=27.01 Aligned_cols=64 Identities=16% Similarity=0.152 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHH
Q 027314 152 KESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKV 215 (225)
Q Consensus 152 ~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~ 215 (225)
+.+++|..-.+.++.+...++..++.++......+.....+++++..+..-+..|.+++...+.
T Consensus 9 kKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~ 72 (101)
T 3u1c_A 9 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSED 72 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555444444455555555555555555555555544443
No 13
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=75.89 E-value=18 Score=25.88 Aligned_cols=68 Identities=12% Similarity=0.116 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhh
Q 027314 151 QKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIF 218 (225)
Q Consensus 151 ~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~ 218 (225)
++++..|..-.+....+...+...+++.+......+.-+...++++..+..=...+.+++......|.
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555566555666666666555555566777777777777777777777777766653
No 14
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=75.79 E-value=28 Score=27.63 Aligned_cols=65 Identities=8% Similarity=-0.015 Sum_probs=46.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHH
Q 027314 129 FLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWK 193 (225)
Q Consensus 129 l~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~ 193 (225)
+..-+..+..+.-.++++..+.+.++..|...+-..-..+..+++.+.+|+.+...|+.+.....
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888888888888888888888888777766666666666666666655555554444433
No 15
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=74.21 E-value=22 Score=33.25 Aligned_cols=91 Identities=11% Similarity=0.146 Sum_probs=51.4
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhcCcCchHHHHHHHHHhHHHHHhh
Q 027314 127 SSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYL----KRTLGQLEDDVAPCEAQMENWKTNLAVMASK 202 (225)
Q Consensus 127 ~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~L----k~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K 202 (225)
-.|-..|.+|...+++..+.......-+..+-+++++.+....-. .+-..+|+.+-..++.++.+...+++.|++=
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~ 142 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKN 142 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 346667777777777776666655555555555555544432111 2222334444455556666666667777766
Q ss_pred HHHHHHHHHhHHHHh
Q 027314 203 ERQYLQQYNNYKVSI 217 (225)
Q Consensus 203 ~~Ey~~r~~~~~~~~ 217 (225)
++.-+-+|..|+..|
T Consensus 143 l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 143 VRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666544
No 16
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=73.95 E-value=22 Score=26.40 Aligned_cols=91 Identities=14% Similarity=0.148 Sum_probs=38.9
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHH
Q 027314 127 SSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQY 206 (225)
Q Consensus 127 ~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey 206 (225)
..+=.-|..|..+.-++..+...++.+++.......+.-..+..|++.+..+++++.....+...-++++.--.-+..+-
T Consensus 5 d~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~A 84 (101)
T 3u59_A 5 EAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDA 84 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455544444444444444444444433333333333455555554443333333333333333333333334
Q ss_pred HHHHHhHHHHh
Q 027314 207 LQQYNNYKVSI 217 (225)
Q Consensus 207 ~~r~~~~~~~~ 217 (225)
...+++|.+.|
T Consensus 85 E~evasLnRri 95 (101)
T 3u59_A 85 EAEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44455555443
No 17
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=73.46 E-value=30 Score=26.94 Aligned_cols=77 Identities=16% Similarity=0.168 Sum_probs=51.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhH-------HHHHhhHH
Q 027314 132 AMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNL-------AVMASKER 204 (225)
Q Consensus 132 ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~-------k~L~~K~~ 204 (225)
-|.+|...+..+|+.....+.+++.| +.+++. +++.|+. .+-|.+|+.-....- .=+..+..
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idel----k~ei~q---~~~~lE~----I~vLkaQv~IY~~DF~aERadREkl~~eKe 93 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKL----KEEAEQ---HKIVMET----VPVLKAQADIYKADFQAERHAREKLVEKKE 93 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---HHHHHTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---HHHHHHH----HHHHHHHHHHHHHHHccchhhHHHHHhHHH
Confidence 57889999999999999888888777 445555 3444433 234445554433322 22677888
Q ss_pred HHHHHHHhHHHHhhh
Q 027314 205 QYLQQYNNYKVSIFC 219 (225)
Q Consensus 205 Ey~~r~~~~~~~~~~ 219 (225)
+|.++++.++.-+++
T Consensus 94 ~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 94 YLQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998876654
No 18
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=70.87 E-value=27 Score=26.08 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=29.3
Q ss_pred HHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHh
Q 027314 170 YLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSI 217 (225)
Q Consensus 170 ~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~ 217 (225)
...+.|.+++.++..+|... ...+.+|+++|+..+.++++-+
T Consensus 60 EA~eLl~qMelE~r~~p~s~------R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 60 EANETLAEMEEELRYAPLTF------RNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHTSCHHH------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHhhc
Confidence 35667777766654444322 3378899999999999998754
No 19
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=70.16 E-value=29 Score=25.35 Aligned_cols=73 Identities=16% Similarity=0.237 Sum_probs=52.8
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc-------CchHHHHHHHHHhHHHHH
Q 027314 128 SFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDV-------APCEAQMENWKTNLAVMA 200 (225)
Q Consensus 128 sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~-------a~l~~q~~ew~r~~k~L~ 200 (225)
.+=..|-.++.+...++-++.-++..++.+..+.+.+++.-+.....+.-|+.++ .++++|+...+-.+.||+
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455667777777777777777777888888888888888777777777777663 556666666666666654
No 20
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=70.13 E-value=13 Score=27.67 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=29.9
Q ss_pred HHHHHHhhhcCcCch--HHHHHHHHHhHHHHHhhHHHHHHHHHh-HHHHhhh
Q 027314 171 LKRTLGQLEDDVAPC--EAQMENWKTNLAVMASKERQYLQQYNN-YKVSIFC 219 (225)
Q Consensus 171 Lk~~L~~Le~~~a~l--~~q~~ew~r~~k~L~~K~~Ey~~r~~~-~~~~~~~ 219 (225)
..+.|.+++.++... |... ...+.+|+++|+..+.+ ++.-+..
T Consensus 46 A~ell~qMelE~~~~~~p~~~------R~~~~~klr~Yk~dl~~~lk~~lk~ 91 (97)
T 3onj_A 46 LFDLLDQMDVEVNNSIGDASE------RATYKAKLREWKKTIQSDIKRPLQS 91 (97)
T ss_dssp HHHHHHHHHHHHHHHCCCHHH------HHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777554444 3221 34789999999999999 9877654
No 21
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=66.11 E-value=10 Score=28.39 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=29.7
Q ss_pred HHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhhh
Q 027314 171 LKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIFC 219 (225)
Q Consensus 171 Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~~ 219 (225)
..+.|.+++.++..+|... ...|.+|+++|+..+.+++.-+.+
T Consensus 50 A~ell~qMelE~r~~p~~~------R~~~~~klr~Yk~dL~~lk~elk~ 92 (102)
T 1vcs_A 50 ARELLEQMDLEVREIPPQS------RGMYSNRMRSYKQEMGKLETDFKR 92 (102)
T ss_dssp HHHHHHHHHHHHTTSCTTT------HHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHhCCHHh------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666665544444222 337889999999999999987754
No 22
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=65.99 E-value=84 Score=36.64 Aligned_cols=34 Identities=9% Similarity=0.020 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027314 142 AVEEKRAKVQKESKILLDYTRKAIARLTYLKRTL 175 (225)
Q Consensus 142 ~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L 175 (225)
+.+++..+++.+++.|++...+.+..-..|+.++
T Consensus 2032 ~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~ 2065 (3245)
T 3vkg_A 2032 EIVATITALEKSIATYKEEYATLIRETEQIKTES 2065 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433333333
No 23
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=65.56 E-value=32 Score=24.85 Aligned_cols=56 Identities=16% Similarity=0.149 Sum_probs=31.9
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHH
Q 027314 135 DISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYL 207 (225)
Q Consensus 135 dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~ 207 (225)
.++..+.++|..+..++.++..|+..+...... ....-.+|.+=+..|..|+-|..
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~-----------------q~~~~~Elk~~~e~Ld~KI~eL~ 59 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSE-----------------QDAFRSNLKTLLEILDGKIFELT 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhHHHHHH
Confidence 455666677777776666666665544444433 22333455566666777765543
No 24
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=65.46 E-value=44 Score=25.63 Aligned_cols=73 Identities=15% Similarity=0.229 Sum_probs=44.9
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhcC-------cCchHHHHHHHH
Q 027314 128 SFLVAMGDISLRKTAVEEKRAKVQKESKIL-------LDYTRKAIARLTYLKRTLGQLEDD-------VAPCEAQMENWK 193 (225)
Q Consensus 128 sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L-------~~~l~k~l~~~~~Lk~~L~~Le~~-------~a~l~~q~~ew~ 193 (225)
-|..-|.+|-..+..+...+.+++.++..+ ..+.+.+++.-..+...+.-|+.+ -.+++.+....+
T Consensus 17 ~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~ 96 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 96 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 355567777777777776666666666554 444555666555555555544433 256667777777
Q ss_pred HhHHHHH
Q 027314 194 TNLAVMA 200 (225)
Q Consensus 194 r~~k~L~ 200 (225)
-.+.||+
T Consensus 97 eEl~FLK 103 (119)
T 3ol1_A 97 EEIAFLK 103 (119)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777776
No 25
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=64.27 E-value=57 Score=26.55 Aligned_cols=81 Identities=17% Similarity=0.262 Sum_probs=52.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHH
Q 027314 136 ISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKV 215 (225)
Q Consensus 136 Lt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~ 215 (225)
|........++-...+.+++.|...+..+-.|...-.+.+.+|+....+++.....+..+.+.+..-..+-...+.++.+
T Consensus 61 LE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~ 140 (155)
T 2efr_A 61 LEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLS 140 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33333344455555556677777777777777666677777777776777777777777777777766666666666554
Q ss_pred H
Q 027314 216 S 216 (225)
Q Consensus 216 ~ 216 (225)
.
T Consensus 141 ~ 141 (155)
T 2efr_A 141 K 141 (155)
T ss_dssp H
T ss_pred c
Confidence 4
No 26
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=64.25 E-value=21 Score=26.00 Aligned_cols=41 Identities=12% Similarity=0.249 Sum_probs=20.5
Q ss_pred HHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhh
Q 027314 171 LKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIF 218 (225)
Q Consensus 171 Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~ 218 (225)
|...|.+++ .+...|..+. -..|..|.. ..-.|++|.++|.
T Consensus 40 lE~el~~~r---~e~~~ql~EY---q~LlnvK~~-Le~EIatYRkLLE 80 (86)
T 1x8y_A 40 KEREMAEMR---ARMQQQLDEY---QELLDIKLA-LDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHH---HHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHH---HHHHHHHHh-hHHHHHHHHHHHc
Confidence 355555555 3334444433 234555543 3455677777664
No 27
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=62.57 E-value=71 Score=27.04 Aligned_cols=7 Identities=14% Similarity=0.458 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 027314 49 VAHLYNL 55 (225)
Q Consensus 49 l~~L~~L 55 (225)
|+.|+.|
T Consensus 7 L~~L~~L 13 (256)
T 3na7_A 7 LKQLIEI 13 (256)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344444
No 28
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=60.19 E-value=48 Score=24.28 Aligned_cols=56 Identities=9% Similarity=0.076 Sum_probs=31.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHH
Q 027314 134 GDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQY 206 (225)
Q Consensus 134 ~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey 206 (225)
-.++..+.++|..+..++.++..|+..+......- ...-.+|.+=+..|..|+-|.
T Consensus 9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q-----------------~~~~~Elk~l~e~Ld~KI~eL 64 (79)
T 3cvf_A 9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAER-----------------ERARAEVGRAAQLLDVSLFEL 64 (79)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHhhHHHHH
Confidence 34566666777777766666666654444444332 233345555566666666544
No 29
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=59.25 E-value=47 Score=23.92 Aligned_cols=52 Identities=19% Similarity=0.261 Sum_probs=41.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 027314 129 FLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLED 180 (225)
Q Consensus 129 l~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~ 180 (225)
+=..|-+|..++.+......+++.+++.++.-+.-.|--+..|+..|.+|-.
T Consensus 19 Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL~~ 70 (72)
T 3cve_A 19 LEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKLLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcc
Confidence 3345667777777777888888889999999999999999889998888753
No 30
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=58.83 E-value=59 Score=26.18 Aligned_cols=68 Identities=16% Similarity=0.185 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHH------hHHHHHhhHH--HHHHHHHhHHHHhhhh
Q 027314 153 ESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKT------NLAVMASKER--QYLQQYNNYKVSIFCY 220 (225)
Q Consensus 153 e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r------~~k~L~~K~~--Ey~~r~~~~~~~~~~~ 220 (225)
|-..||.-+..-..+...|...|..|......-..-+.+|.+ +-.++..|.+ -.+++|+-++.++.-|
T Consensus 60 EYk~Lhaev~~v~~~F~~Ld~~L~~l~~~s~e~~~i~~EY~r~k~~K~dp~y~ekK~Rc~yL~~KLsHIK~lI~~Y 135 (140)
T 1xaw_A 60 EYKSLQSVLDEINKELSRLDKELDDYREESEEYMAAADEYNRLKQVKGSADYKSKKNHCKQLKSKLSHIKKMVGDY 135 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666666666667767888888876443333333567776 2336777776 6777788888777666
No 31
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=57.68 E-value=81 Score=26.13 Aligned_cols=34 Identities=12% Similarity=0.133 Sum_probs=13.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027314 132 AMGDISLRKTAVEEKRAKVQKESKILLDYTRKAI 165 (225)
Q Consensus 132 ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l 165 (225)
.+.+|.-....++..+..+++++-.||.-|..+-
T Consensus 49 ~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr 82 (168)
T 3o0z_A 49 LNRELQERNRILENSKSQTDKDYYQLQAILEAER 82 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333443444444444444444444444444333
No 32
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=56.89 E-value=53 Score=25.96 Aligned_cols=49 Identities=18% Similarity=0.119 Sum_probs=34.2
Q ss_pred HHHHHhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027314 131 VAMGDISLRKTAV----EEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLE 179 (225)
Q Consensus 131 ~ai~dLt~~~~~~----e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le 179 (225)
..+.+|...+... ..+.++++-|+++|-..|+++.+.+++|++.-..+.
T Consensus 53 qTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 53 HTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 3444444444433 344788888889998888888888888888776655
No 33
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=56.63 E-value=40 Score=22.23 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027314 151 QKESKILLDYTRKAIARLTYLKRTLG 176 (225)
Q Consensus 151 ~~e~~~L~~~l~k~l~~~~~Lk~~L~ 176 (225)
..+-+.|-.|++|+|+. |++.++
T Consensus 26 nlhkkdliaylekeian---lrkkie 48 (49)
T 3he5_A 26 NLHKKDLIAYLEKEIAN---LRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHC
T ss_pred cccHHHHHHHHHHHHHH---HHHHhc
Confidence 34667788899999998 576654
No 34
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=56.58 E-value=61 Score=24.36 Aligned_cols=71 Identities=17% Similarity=0.180 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-----cCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHH
Q 027314 144 EEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDD-----VAPCEAQMENWKTNLAVMASKERQYLQQYNNYK 214 (225)
Q Consensus 144 e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~-----~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~ 214 (225)
|+.+.+++.++..|++-++++...-.-|.++..=...+ |..++.++.+-..++..|..=+--|+.-++.++
T Consensus 14 eqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 14 EQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57778888888888888888877744445554444444 466677777766666666666655655555554
No 35
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=56.19 E-value=58 Score=24.05 Aligned_cols=69 Identities=16% Similarity=0.181 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHh
Q 027314 149 KVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSI 217 (225)
Q Consensus 149 r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~ 217 (225)
.+.+.+++|..-.+.++.+...+...++.++.........+...+++++.+..-...|.+++...+..|
T Consensus 6 ~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kL 74 (101)
T 3u59_A 6 AIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKL 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777777777777777777777766566666677777777777777777777776665444
No 36
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=55.90 E-value=27 Score=22.90 Aligned_cols=31 Identities=26% Similarity=0.460 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027314 142 AVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLE 179 (225)
Q Consensus 142 ~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le 179 (225)
++=|+..|+++|+.+- ++.|+. |+..+++|+
T Consensus 6 ~l~qkI~kVdrEI~Kt----e~kI~~---lqkKlkeLe 36 (42)
T 2l5g_B 6 ELIQNMDRVDREITMV----EQQISK---LKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHH---HHHHHHHHH
Confidence 4557777888887765 566666 577777766
No 37
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=55.15 E-value=91 Score=29.09 Aligned_cols=43 Identities=9% Similarity=0.210 Sum_probs=17.0
Q ss_pred HHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHH
Q 027314 172 KRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYK 214 (225)
Q Consensus 172 k~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~ 214 (225)
+..+++.++.--..-.-+.+..+....|+-|+..-..+|..|+
T Consensus 98 k~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq 140 (390)
T 1deq_A 98 RGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQ 140 (390)
T ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3334333333223333333444444444444444333444333
No 38
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=54.59 E-value=60 Score=23.73 Aligned_cols=53 Identities=11% Similarity=0.156 Sum_probs=44.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 027314 129 FLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDD 181 (225)
Q Consensus 129 l~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~ 181 (225)
+=..|-+|..++.+..+++.+++.+++.++.-+.-.|--+..|+..|.+|-.+
T Consensus 25 Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL~~~ 77 (79)
T 3cvf_A 25 LEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARLAEA 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccc
Confidence 44567777788888888888899999999999999999999999999888654
No 39
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=53.38 E-value=1e+02 Score=25.92 Aligned_cols=80 Identities=13% Similarity=0.092 Sum_probs=49.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHH
Q 027314 129 FLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQ 208 (225)
Q Consensus 129 l~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~ 208 (225)
+-..+..|..+.-....+......+.......+.+++.. |+..-..|+...-+++-.+++.-|...+..+.+..+..
T Consensus 61 L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~---l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~ 137 (189)
T 2v71_A 61 LQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQ---TRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQ 137 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHH
Confidence 334455555555555555555555555555556666665 35555555555556667777777777777777777776
Q ss_pred HHH
Q 027314 209 QYN 211 (225)
Q Consensus 209 r~~ 211 (225)
++.
T Consensus 138 kln 140 (189)
T 2v71_A 138 RLN 140 (189)
T ss_dssp HHH
T ss_pred HHH
Confidence 663
No 40
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=53.38 E-value=85 Score=25.08 Aligned_cols=71 Identities=10% Similarity=0.130 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHh
Q 027314 142 AVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNN 212 (225)
Q Consensus 142 ~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~ 212 (225)
+++....+.++-.+.|.....+.--++..|..+|++.+....+-..+..+=.|+++++...+....+|+..
T Consensus 28 eaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~ 98 (147)
T 2b9c_A 28 EAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAEL 98 (147)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333343333333333333444444444333333344444444444444444444444433
No 41
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=53.05 E-value=1e+02 Score=29.22 Aligned_cols=65 Identities=12% Similarity=0.078 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc---CchHHHHHHHHHhHHHHHhhHHHHHHHH
Q 027314 139 RKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDV---APCEAQMENWKTNLAVMASKERQYLQQY 210 (225)
Q Consensus 139 ~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~---a~l~~q~~ew~r~~k~L~~K~~Ey~~r~ 210 (225)
++.++.+++++++.+++.| +.+.+. +.+++.+++... ..+.+++.+-...++-|..++.+..+++
T Consensus 34 ~~~~ld~~~r~~~~~~~~l----~~~rn~---~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 34 EIIAEYKEWVKLRFDLDEH----NKKLNS---VQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHH---HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHH---HHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666665 344444 344555544332 3333444444444444444444444444
No 42
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=52.68 E-value=62 Score=23.26 Aligned_cols=41 Identities=7% Similarity=0.205 Sum_probs=20.5
Q ss_pred HHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhh
Q 027314 171 LKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIF 218 (225)
Q Consensus 171 Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~ 218 (225)
|...|.+++ .+...|..+.+ ..|..|.. ..-.|++|.++|.
T Consensus 38 lE~eL~~~r---~e~~~q~~EYq---~LlnvK~~-Ld~EIatYRkLLE 78 (84)
T 1gk4_A 38 LQDEIQNMK---EEMARHLREYQ---DLLNVKMA-LDIEIATYRKLLE 78 (84)
T ss_dssp HHHHHHHHH---HHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHHT
T ss_pred HHHHHHHHH---HHHHHHHHHHH---HHHHHHHh-hHHHHHHHHHHHc
Confidence 455555555 33444444432 34555543 3345677776663
No 43
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=52.63 E-value=1.2e+02 Score=28.23 Aligned_cols=65 Identities=9% Similarity=0.099 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc---CchHHHHHHHHHhHHHHHhhHHHHHHHH
Q 027314 139 RKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDV---APCEAQMENWKTNLAVMASKERQYLQQY 210 (225)
Q Consensus 139 ~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~---a~l~~q~~ew~r~~k~L~~K~~Ey~~r~ 210 (225)
++.++.+++++++.+++.| +.+.+. +.+++++++... ..+.+++.+-...++-+..+..+..+++
T Consensus 32 ~~~~l~~~~r~~~~~~~~l----~~~~n~---~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (455)
T 2dq0_A 32 EILKLDTEWRTKLKEINRL----RHERNK---IAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKI 99 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHH---HHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHH---HHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666555555555 334444 355555554332 2333444444444444444444444443
No 44
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=52.54 E-value=66 Score=23.55 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=9.0
Q ss_pred HHHHHHHHhhhcC
Q 027314 169 TYLKRTLGQLEDD 181 (225)
Q Consensus 169 ~~Lk~~L~~Le~~ 181 (225)
..+++.+..++.+
T Consensus 34 ~~l~~~l~~l~~~ 46 (112)
T 1l8d_A 34 GDLKTAIEELKKA 46 (112)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhcC
Confidence 3367888888764
No 45
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=52.43 E-value=37 Score=35.09 Aligned_cols=7 Identities=0% Similarity=-0.035 Sum_probs=3.4
Q ss_pred HHHHHHh
Q 027314 24 VKAWLAS 30 (225)
Q Consensus 24 V~sWL~~ 30 (225)
+..+|..
T Consensus 752 ~~~lL~~ 758 (1184)
T 1i84_S 752 CILMIKA 758 (1184)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 3455554
No 46
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=51.93 E-value=95 Score=29.74 Aligned_cols=88 Identities=6% Similarity=0.113 Sum_probs=52.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHH
Q 027314 129 FLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYL----KRTLGQLEDDVAPCEAQMENWKTNLAVMASKER 204 (225)
Q Consensus 129 l~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~L----k~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~ 204 (225)
|...|.+|...+++..+...-...-+..+-+++++.+.-..-. .+-..+|+.+-..+..++.+..+++++|+.=++
T Consensus 63 v~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~ 142 (491)
T 1m1j_A 63 YSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQ 142 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667776666666555554445555555554444332211 222334444445666777777788888888887
Q ss_pred HHHHHHHhHHHH
Q 027314 205 QYLQQYNNYKVS 216 (225)
Q Consensus 205 Ey~~r~~~~~~~ 216 (225)
.-+-+|..|+.-
T Consensus 143 ~q~skIQRLE~d 154 (491)
T 1m1j_A 143 EQVVEMKRLEVD 154 (491)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777766643
No 47
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=51.17 E-value=1.1e+02 Score=25.79 Aligned_cols=13 Identities=23% Similarity=0.197 Sum_probs=10.7
Q ss_pred HhhHHHHHHHHHh
Q 027314 200 ASKERQYLQQYNN 212 (225)
Q Consensus 200 ~~K~~Ey~~r~~~ 212 (225)
+.|+|++++||.+
T Consensus 188 K~KIR~lq~~Ll~ 200 (213)
T 1ik9_A 188 KTKIRSLHNKLLN 200 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6899999988854
No 48
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=50.06 E-value=1e+02 Score=25.08 Aligned_cols=29 Identities=24% Similarity=0.161 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027314 151 QKESKILLDYTRKAIARLTYLKRTLGQLE 179 (225)
Q Consensus 151 ~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le 179 (225)
++++..|...+...-.++..++.+|..|+
T Consensus 114 e~r~~~L~~ql~e~~~~l~~lq~ql~~LK 142 (154)
T 2ocy_A 114 EILNKRLTEQLREKDTLLDTLTLQLKNLK 142 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443
No 49
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=49.74 E-value=77 Score=23.51 Aligned_cols=12 Identities=0% Similarity=0.055 Sum_probs=4.8
Q ss_pred hHHHHHHHHHhH
Q 027314 202 KERQYLQQYNNY 213 (225)
Q Consensus 202 K~~Ey~~r~~~~ 213 (225)
..-++.+...++
T Consensus 68 ql~e~~dE~~Sl 79 (96)
T 3q8t_A 68 QQLELDDELKSV 79 (96)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444333
No 50
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=49.17 E-value=49 Score=23.86 Aligned_cols=29 Identities=10% Similarity=0.196 Sum_probs=12.9
Q ss_pred HHHHHHHHhHHHHHhhHHHHHHHHHhHHH
Q 027314 187 AQMENWKTNLAVMASKERQYLQQYNNYKV 215 (225)
Q Consensus 187 ~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~ 215 (225)
.++......+.-+...+.+..+|-..|+.
T Consensus 56 ~~~~~l~~~l~~~e~eLe~~~erWeeLe~ 84 (89)
T 2lw1_A 56 EQTQKVLADMAAAEQELEQAFERWEYLEA 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 51
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=48.69 E-value=49 Score=25.31 Aligned_cols=55 Identities=11% Similarity=0.104 Sum_probs=42.0
Q ss_pred CCCChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 027314 122 RDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLED 180 (225)
Q Consensus 122 ~dts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~ 180 (225)
.|++.-++...|..+...+...-++..+.-...+.||++|..---. +..|..|..
T Consensus 32 nDssVQsLF~~lt~MH~~Ll~~i~~~ee~R~~yE~LQDkL~qi~eA----R~ALdaLR~ 86 (98)
T 3f1i_H 32 NDSAVLSLFQSINGMHPQLLELLNQLDERRLYYEGLQDKLAQIRDA----RGALSALRE 86 (98)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 4778889999999999888877777776666889998887654444 666766663
No 52
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=48.65 E-value=39 Score=25.26 Aligned_cols=77 Identities=10% Similarity=0.132 Sum_probs=34.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHH
Q 027314 132 AMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYN 211 (225)
Q Consensus 132 ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~ 211 (225)
-|.+|......+|.+..+++.+...-.......+.. |...|.+++ .+...|..+.+ ..|..|.. ..-.|+
T Consensus 13 ~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~---lE~eL~~~r---~e~~~ql~EYq---~LlnvKl~-Le~EIa 82 (95)
T 3mov_A 13 LYFQGQKESRACLERIQELEDLLAKEKDNSRRMLTD---KEREMAEIR---DQMQQQLNDYE---QLLDVKLA-LDMEIS 82 (95)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH---HHHHHHHHHHH---HHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH---HHHHHHHHHHH---HHHHHHHH-HHHHHH
Confidence 344455555555555555444444443333444444 455555555 33333433332 35555543 234567
Q ss_pred hHHHHhh
Q 027314 212 NYKVSIF 218 (225)
Q Consensus 212 ~~~~~~~ 218 (225)
+|.++|.
T Consensus 83 tYrkLLE 89 (95)
T 3mov_A 83 AYRKLLE 89 (95)
T ss_dssp HHHHHHC
T ss_pred HHHHHHc
Confidence 7776663
No 53
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=47.99 E-value=1.5e+02 Score=27.51 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=20.7
Q ss_pred HHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHH
Q 027314 173 RTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKV 215 (225)
Q Consensus 173 ~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~ 215 (225)
+++.+++..+...+.+....+..++.+.+|+.+..+++..+..
T Consensus 91 ~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 91 EEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3333443322333344444444455555666666666665554
No 54
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=47.83 E-value=88 Score=23.67 Aligned_cols=56 Identities=21% Similarity=0.324 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHH
Q 027314 145 EKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYK 214 (225)
Q Consensus 145 ~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~ 214 (225)
....|+...+..-+.-++.+|.. |.+.+..|+ .-+++.|.|+.|.--....+..|.
T Consensus 36 ~tfarLc~~Vd~t~~eL~~EI~~---L~~eI~~LE-----------~iqs~aK~LRnKA~~L~~eLe~F~ 91 (96)
T 1t3j_A 36 TTFARLCQQVDMTQKHLEEEIAR---LSKEIDQLE-----------KMQNNSKLLRNKAVQLESELENFS 91 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-----------HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555 344444443 455667777777766666666554
No 55
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=47.51 E-value=82 Score=23.23 Aligned_cols=21 Identities=14% Similarity=0.052 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027314 140 KTAVEEKRAKVQKESKILLDY 160 (225)
Q Consensus 140 ~~~~e~~~~r~~~e~~~L~~~ 160 (225)
.--+|+++..++.+++.++..
T Consensus 25 VR~LEqqN~~Le~~i~~l~~~ 45 (93)
T 3s4r_A 25 VRFLEQQNKILLAELEQLKGQ 45 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 445677888888888777653
No 56
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=46.97 E-value=77 Score=24.69 Aligned_cols=53 Identities=8% Similarity=-0.012 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHH
Q 027314 159 DYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYK 214 (225)
Q Consensus 159 ~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~ 214 (225)
+|++..... |++.-..|+..|.+++.+....+...+-+..++.+++.+++.++
T Consensus 7 ~~~~~~~~~---l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 7 EAVEEMERL---LREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp HHHHHHHHH---HHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 45555566666778999999999999999999999999988775
No 57
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=46.72 E-value=82 Score=22.98 Aligned_cols=40 Identities=20% Similarity=0.342 Sum_probs=30.8
Q ss_pred HHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHH
Q 027314 171 LKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQY 210 (225)
Q Consensus 171 Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~ 210 (225)
|..+|.+|+.+++.+.+++++-...+.-|..+-+++-..+
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888888888888888888888888877777665544
No 58
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=46.30 E-value=46 Score=26.70 Aligned_cols=16 Identities=6% Similarity=-0.012 Sum_probs=8.3
Q ss_pred hHHHHHHHhhhhHHHH
Q 027314 128 SFLVAMGDISLRKTAV 143 (225)
Q Consensus 128 sl~~ai~dLt~~~~~~ 143 (225)
.+-..+=+||..+|+-
T Consensus 71 ~ie~ElE~LTasLFeE 86 (135)
T 2e7s_A 71 KLNKEVEDLTASLFDE 86 (135)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555543
No 59
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=45.76 E-value=45 Score=32.49 Aligned_cols=29 Identities=10% Similarity=0.194 Sum_probs=21.3
Q ss_pred HHHHhHHHHHhhHHHHHHHHHhHHHHhhh
Q 027314 191 NWKTNLAVMASKERQYLQQYNNYKVSIFC 219 (225)
Q Consensus 191 ew~r~~k~L~~K~~Ey~~r~~~~~~~~~~ 219 (225)
+..|..-.|+.|+..-..+|..|+..|..
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLed 142 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRA 142 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777888877777777777776654
No 60
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=44.94 E-value=22 Score=25.88 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=20.8
Q ss_pred HHHHHhhHHHHHHHHHhHHHHhhh
Q 027314 196 LAVMASKERQYLQQYNNYKVSIFC 219 (225)
Q Consensus 196 ~k~L~~K~~Ey~~r~~~~~~~~~~ 219 (225)
.+.++.|..||.+|...++..|+.
T Consensus 59 k~~lr~K~~eYl~RAE~LK~~l~~ 82 (86)
T 4a5x_A 59 RCNLREKISKYMDRAENIKKYLDQ 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456889999999999999998863
No 61
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=44.39 E-value=70 Score=26.50 Aligned_cols=49 Identities=10% Similarity=0.053 Sum_probs=36.4
Q ss_pred HHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhhh
Q 027314 171 LKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIFC 219 (225)
Q Consensus 171 Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~~ 219 (225)
|...-..|+.++..++++..+=.++...+..=+.++..|+.++..-|.+
T Consensus 60 L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~ 108 (168)
T 3o0z_A 60 LENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKH 108 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555565677888888888888888888888888888888766654
No 62
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=43.55 E-value=2.3e+02 Score=29.31 Aligned_cols=9 Identities=33% Similarity=0.338 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 027314 149 KVQKESKIL 157 (225)
Q Consensus 149 r~~~e~~~L 157 (225)
.++.+++.|
T Consensus 988 ~L~~e~~~l 996 (1080)
T 2dfs_A 988 SLQEEIAKL 996 (1080)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 63
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=43.46 E-value=1.1e+02 Score=23.49 Aligned_cols=46 Identities=4% Similarity=0.135 Sum_probs=30.3
Q ss_pred HHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHH
Q 027314 171 LKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVS 216 (225)
Q Consensus 171 Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~ 216 (225)
|...|.++.....+...++.+.....+-|...+.++..+|..++..
T Consensus 81 Le~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~~ 126 (129)
T 2fxo_A 81 LEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELT 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555566665555666777777777777777777777777666543
No 64
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=43.21 E-value=1.2e+02 Score=24.34 Aligned_cols=50 Identities=10% Similarity=0.139 Sum_probs=37.0
Q ss_pred HHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhhhh
Q 027314 169 TYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIFCY 220 (225)
Q Consensus 169 ~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~~~ 220 (225)
+.+-+.|++|.. -.+|....+-....|.|-.|+-.+..|+..+.+-|+.|
T Consensus 73 E~~Mk~LE~LDs--~~ip~~~~~~R~kRK~lV~~iQ~~L~~~D~l~~~~~~~ 122 (135)
T 1i6z_A 73 EQFMKILEEIDT--MVLPEQFKDSRLKRKNLVKKVQVFLAECDTVEQYICQE 122 (135)
T ss_dssp HHHHHHHHHHHT--CCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc--ccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566777763 34444555667788999999999999999998888755
No 65
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=43.14 E-value=1e+02 Score=28.26 Aligned_cols=67 Identities=15% Similarity=0.358 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---cCchHHHHHHHHHhHHHHHhhHHHHHHHHHh
Q 027314 139 RKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDD---VAPCEAQMENWKTNLAVMASKERQYLQQYNN 212 (225)
Q Consensus 139 ~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~---~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~ 212 (225)
++.++.+++.+++.+++.| +.+.+. +.+++++++.. ...+.+++.+-...++-+..+..+..+++..
T Consensus 31 ~~~~~~~~~r~~~~~~~~l----~~~~n~---~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 2dq3_A 31 KVLELDKRRREIIKRLEAL----RSERNK---LSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKN 100 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHH---HHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHH---HHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666666 444444 45666666433 3444455666555566666666665555543
No 66
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=43.01 E-value=25 Score=25.03 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=20.8
Q ss_pred HHHHHhhHHHHHHHHHhHHHHhhh
Q 027314 196 LAVMASKERQYLQQYNNYKVSIFC 219 (225)
Q Consensus 196 ~k~L~~K~~Ey~~r~~~~~~~~~~ 219 (225)
.+.++.|..||.+|+..++..|+.
T Consensus 56 k~~l~~k~~eYl~RAE~Lk~~l~~ 79 (85)
T 2v6x_A 56 KDLIRAKFTEYLNRAEQLKKHLES 79 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457899999999999999988763
No 67
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=42.28 E-value=2.1e+02 Score=26.48 Aligned_cols=91 Identities=16% Similarity=0.108 Sum_probs=44.1
Q ss_pred HHHHHHHHhccccccCCChhHHHHHHHHHHHHHHhCCCCCChhhHHHH---HHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 027314 85 ARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVA---MGDISLRKTAVEEKRAKVQKESKILLDYT 161 (225)
Q Consensus 85 ~~l~elLe~vgls~~sLs~~G~~aL~aLa~~A~~L~~~dts~~sl~~a---i~dLt~~~~~~e~~~~r~~~e~~~L~~~l 161 (225)
..+.++|+.| ++++.+...+..++-++-.. ...+.+...-.+ .-++-.++..+|......+.++..|+..+
T Consensus 41 ~~LE~~l~el----sn~ts~v~~Lvk~iq~~~~~--~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~ 114 (409)
T 1m1j_C 41 LEIEGLLQQA----TNSTGSIEYLIQHIKTIYPS--EKQTLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMH 114 (409)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHSCS--STTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHhccc--ccCCCCCchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3344556666 56666666666666666221 112333333222 12222333344444444444555555544
Q ss_pred HHHHHHHHHHHHHHHhhhcC
Q 027314 162 RKAIARLTYLKRTLGQLEDD 181 (225)
Q Consensus 162 ~k~l~~~~~Lk~~L~~Le~~ 181 (225)
...-.++..|+..+.+|+..
T Consensus 115 ~~~~~~i~~l~~~i~~l~~~ 134 (409)
T 1m1j_C 115 IMNSNKITQLKQKIAQLESH 134 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHHHHH
Confidence 44444455566666666643
No 68
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=41.71 E-value=1e+02 Score=22.54 Aligned_cols=26 Identities=8% Similarity=0.257 Sum_probs=19.7
Q ss_pred CchHHHHHHHHHhHHHHHhhHHHHHH
Q 027314 183 APCEAQMENWKTNLAVMASKERQYLQ 208 (225)
Q Consensus 183 a~l~~q~~ew~r~~k~L~~K~~Ey~~ 208 (225)
..+.....++.+|+..|+.|..|...
T Consensus 49 ~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 49 TRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446678888999999999888653
No 69
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=41.13 E-value=1e+02 Score=22.38 Aligned_cols=46 Identities=13% Similarity=-0.044 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHH
Q 027314 143 VEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQ 188 (225)
Q Consensus 143 ~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q 188 (225)
.+.....++.+++.+.+.+.+.-.....|.....+|..+-.++..|
T Consensus 12 ~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 12 QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555777777777776666666666666666555555554
No 70
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=41.03 E-value=1.1e+02 Score=24.26 Aligned_cols=29 Identities=10% Similarity=0.158 Sum_probs=19.4
Q ss_pred CCCChhhHHHHHHHhhhhHHHHHHHHHHH
Q 027314 122 RDTELSSFLVAMGDISLRKTAVEEKRAKV 150 (225)
Q Consensus 122 ~dts~~sl~~ai~dLt~~~~~~e~~~~r~ 150 (225)
.++.+..|+.-+.++...+..+.....++
T Consensus 34 ~~~~m~~F~~~v~~I~~~i~~i~~~v~~l 62 (180)
T 1s94_A 34 GGGFMEEFFEQVEEIRAMIDKISDNVDAV 62 (180)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566778888888877777777666643
No 71
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=40.68 E-value=2.3e+02 Score=27.26 Aligned_cols=33 Identities=15% Similarity=0.270 Sum_probs=16.1
Q ss_pred HHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhhh
Q 027314 187 AQMENWKTNLAVMASKERQYLQQYNNYKVSIFC 219 (225)
Q Consensus 187 ~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~~ 219 (225)
++.+.....+.-...+..+|+.+++.|+.-+-+
T Consensus 66 ~~l~kY~~dlakY~~~~AeY~~kl~aYe~~~~~ 98 (497)
T 3iox_A 66 AKLAKYQADLAKYQKDLADYPVKLKAYEDEQTS 98 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555555555544433
No 72
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=40.54 E-value=18 Score=26.25 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=18.8
Q ss_pred HHHHHhhHHHHHHHHHhHHHHh
Q 027314 196 LAVMASKERQYLQQYNNYKVSI 217 (225)
Q Consensus 196 ~k~L~~K~~Ey~~r~~~~~~~~ 217 (225)
.+.+..|..||.+|+..++..|
T Consensus 62 k~~ir~K~~eY~~RAE~LK~~l 83 (83)
T 2w2u_A 62 AAIYEQMINEYKRRIEVLKELI 83 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhC
Confidence 4578999999999999998754
No 73
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=39.09 E-value=81 Score=23.28 Aligned_cols=48 Identities=15% Similarity=0.306 Sum_probs=34.5
Q ss_pred ChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027314 125 ELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLE 179 (225)
Q Consensus 125 s~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le 179 (225)
+...|+..|++|-....++|..+.. .+.=++-+..+++. |+++|+.=+
T Consensus 20 ~~E~L~qEi~~Lr~kv~elEnErlQ----yEkKLKsTK~El~~---Lq~qLe~kd 67 (81)
T 3qh9_A 20 KAEELLQELRHLKIKVEELENERNQ----YEWKLKATKAEVAQ---LQEQVALKD 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhHHHHHH---HHHHHHhhH
Confidence 3457999999999999999988874 44444555667666 577776554
No 74
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=37.69 E-value=1.4e+02 Score=22.94 Aligned_cols=36 Identities=8% Similarity=0.104 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 027314 138 LRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLED 180 (225)
Q Consensus 138 ~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~ 180 (225)
.++.++..+.+.++.+++.+ ...-..|...|.+++.
T Consensus 38 ~Ei~elrr~iq~L~~el~~l-------~~~~~sLE~~l~e~e~ 73 (131)
T 3tnu_A 38 SEISELRRTMQNLEIELQSQ-------LSMKASLENSLEETKG 73 (131)
T ss_dssp ---CHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHH
Confidence 34444444444444444444 2222335666666663
No 75
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=36.89 E-value=1.5e+02 Score=30.65 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=10.2
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHH
Q 027314 133 MGDISLRKTAVEEKRAKVQKESKIL 157 (225)
Q Consensus 133 i~dLt~~~~~~e~~~~r~~~e~~~L 157 (225)
+.+|+.+..+++++..+..++.+.+
T Consensus 986 v~~L~~e~~~l~~~~~~~~ke~~~l 1010 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKELHQTQTEKKTI 1010 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443333
No 76
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=36.88 E-value=1.3e+02 Score=27.52 Aligned_cols=57 Identities=16% Similarity=0.154 Sum_probs=44.1
Q ss_pred ChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 027314 125 ELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDD 181 (225)
Q Consensus 125 s~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~ 181 (225)
.+..+-..+..|..+..++++...+++.+++.+...+.++-..-..|.-++.+++..
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgn 60 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGN 60 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 455667778888888888888888888888888888887777766677777777766
No 77
>1pxq_A Subtilisin A; thioether bridge, cyclic peptide, bacteriocin, antimicrobial; HET: 2TL DPN; NMR {Bacillus subtilis} SCOP: j.5.1.2
Probab=36.31 E-value=15 Score=22.89 Aligned_cols=10 Identities=30% Similarity=0.634 Sum_probs=8.8
Q ss_pred CCCCCCCCCC
Q 027314 36 AKEVPAFEYT 45 (225)
Q Consensus 36 ~~pVP~FErN 45 (225)
+.|||.||+-
T Consensus 16 dgpipdfeva 25 (35)
T 1pxq_A 16 DGPIPDFEIA 25 (35)
T ss_dssp TTTCCCSCCS
T ss_pred cCCCCCchhh
Confidence 7899999985
No 78
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=36.13 E-value=2.1e+02 Score=24.58 Aligned_cols=42 Identities=5% Similarity=-0.001 Sum_probs=22.4
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCChhhHHHHHHHhhhhHHHHH
Q 027314 102 PSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVE 144 (225)
Q Consensus 102 s~~G~~aL~aLa~~A~~L~~~dts~~sl~~ai~dLt~~~~~~e 144 (225)
+.-|..++++|..+|..-.-..++ ..+|.+|..+...--.++
T Consensus 49 ~~a~~~f~dal~kia~~A~~s~gs-~elG~~L~~i~~~~r~ie 90 (253)
T 2ykt_A 49 TYAAKGYFDALVKMGELASESQGS-KELGDVLFQMAEVHRQIQ 90 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCcch-HHHHHHHHHHHHHHHHHH
Confidence 344666777776666542222233 677777765554333333
No 79
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=35.30 E-value=37 Score=24.83 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=21.7
Q ss_pred HHHHHhhHHHHHHHHHhHHHHhhhh
Q 027314 196 LAVMASKERQYLQQYNNYKVSIFCY 220 (225)
Q Consensus 196 ~k~L~~K~~Ey~~r~~~~~~~~~~~ 220 (225)
...++.|..||.+|+..++..|+.-
T Consensus 58 k~~l~~K~~eYl~RAE~LK~~l~~~ 82 (93)
T 1wfd_A 58 RCVLRTKISGYMDRAENIKKYLDQE 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4578999999999999999998754
No 80
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=35.25 E-value=3.1e+02 Score=32.17 Aligned_cols=8 Identities=38% Similarity=0.389 Sum_probs=2.9
Q ss_pred HHHHHhhh
Q 027314 172 KRTLGQLE 179 (225)
Q Consensus 172 k~~L~~Le 179 (225)
+..|++++
T Consensus 2034 ~~~L~~le 2041 (3245)
T 3vkg_A 2034 VATITALE 2041 (3245)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 81
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=34.80 E-value=48 Score=26.51 Aligned_cols=85 Identities=13% Similarity=0.071 Sum_probs=28.2
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC----cCchHHHHHHHHHhHHHHHhhHHHH
Q 027314 131 VAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDD----VAPCEAQMENWKTNLAVMASKERQY 206 (225)
Q Consensus 131 ~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~----~a~l~~q~~ew~r~~k~L~~K~~Ey 206 (225)
+-+..|-.++.+...+......+-+.|++..+..--.+.-+...+++++.. ...+.=|+.+...-+|+=..|..+=
T Consensus 2 ~~vtSL~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~~~eE 81 (130)
T 3cl3_D 2 HMASGSLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEE 81 (130)
T ss_dssp -------------------------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677777777666777777776665555544456666665543 3556678888888889999999988
Q ss_pred HHHHHhHHH
Q 027314 207 LQQYNNYKV 215 (225)
Q Consensus 207 ~~r~~~~~~ 215 (225)
+.+++.++.
T Consensus 82 KrkLAqLQ~ 90 (130)
T 3cl3_D 82 KRKLAQLQV 90 (130)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887774
No 82
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=34.48 E-value=1.5e+02 Score=22.55 Aligned_cols=37 Identities=8% Similarity=0.132 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 027314 137 SLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLED 180 (225)
Q Consensus 137 t~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~ 180 (225)
..++.++..+.+.++.+++.+ ...-..|...|.+++.
T Consensus 35 k~Ei~elrr~iq~L~~el~~l-------~~~~~~LE~~l~e~e~ 71 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNV-------KKQCANLQNAIADAEQ 71 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHH
Confidence 344444444445545555444 2223335666666663
No 83
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=34.24 E-value=34 Score=26.27 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=20.9
Q ss_pred HHHHHhhHHHHHHHHHhHHHHhhh
Q 027314 196 LAVMASKERQYLQQYNNYKVSIFC 219 (225)
Q Consensus 196 ~k~L~~K~~Ey~~r~~~~~~~~~~ 219 (225)
...++.|..||.+|+..++..|..
T Consensus 62 k~~lr~K~~eYl~RAE~LK~~l~~ 85 (117)
T 2cpt_A 62 KQSIRAKCTEYLDRAEKLKEYLKN 85 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 457899999999999999998864
No 84
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=32.97 E-value=2.3e+02 Score=26.83 Aligned_cols=23 Identities=0% Similarity=-0.130 Sum_probs=13.6
Q ss_pred HHHHHhhHHHHHHHHHhHHHHhh
Q 027314 196 LAVMASKERQYLQQYNNYKVSIF 218 (225)
Q Consensus 196 ~k~L~~K~~Ey~~r~~~~~~~~~ 218 (225)
++.++.++.+...++..++..+.
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~ 135 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERD 135 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666665555544
No 85
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=32.24 E-value=1.4e+02 Score=21.39 Aligned_cols=9 Identities=11% Similarity=-0.001 Sum_probs=3.4
Q ss_pred HHHHHHhhh
Q 027314 171 LKRTLGQLE 179 (225)
Q Consensus 171 Lk~~L~~Le 179 (225)
|+++|.-|.
T Consensus 47 L~~ql~~L~ 55 (78)
T 3efg_A 47 NAELIRHLL 55 (78)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 86
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=32.19 E-value=1.6e+02 Score=22.22 Aligned_cols=59 Identities=14% Similarity=0.071 Sum_probs=41.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHH
Q 027314 129 FLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEA 187 (225)
Q Consensus 129 l~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~ 187 (225)
++..+.++--++..++.+...++.+++.|+.-+..+-.+-........+++.++.+|-+
T Consensus 3 ~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777888888888888888888888888877755556666666655444443
No 87
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=31.83 E-value=1.6e+02 Score=27.91 Aligned_cols=22 Identities=0% Similarity=-0.126 Sum_probs=10.1
Q ss_pred HHHHHhhHHHHHHHHHhHHHHh
Q 027314 196 LAVMASKERQYLQQYNNYKVSI 217 (225)
Q Consensus 196 ~k~L~~K~~Ey~~r~~~~~~~~ 217 (225)
++.++.++.+...++..++..|
T Consensus 125 ~~~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 125 GREIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 88
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=31.71 E-value=1.2e+02 Score=22.54 Aligned_cols=62 Identities=13% Similarity=0.050 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHH
Q 027314 154 SKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKV 215 (225)
Q Consensus 154 ~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~ 215 (225)
++.+...++++|.+...+|+=-+.|..=..+...+-..-...+++...|+.+.++++..+.+
T Consensus 23 le~~r~~ir~eI~KElKiKeGaENL~katt~~kk~~~~V~~eL~~sn~kl~~L~~eL~eL~a 84 (86)
T 1cxz_B 23 LELERERLRREIRKELKLKEGAENLRRATTDLGRSLGPVELLLRGSSRRLDLLHQQLQELHA 84 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44445555666666555554333332100001111122223477788888888888887764
No 89
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=31.69 E-value=23 Score=25.47 Aligned_cols=22 Identities=5% Similarity=0.081 Sum_probs=18.9
Q ss_pred HHHHHhhHHHHHHHHHhHHHHh
Q 027314 196 LAVMASKERQYLQQYNNYKVSI 217 (225)
Q Consensus 196 ~k~L~~K~~Ey~~r~~~~~~~~ 217 (225)
.+.+..|+.||.+|+..++..|
T Consensus 54 k~~ir~K~~eY~~RAE~Lk~~l 75 (83)
T 2v6y_A 54 RTAYEQMINEYKKRISYLEKVL 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 4578999999999999998765
No 90
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=31.56 E-value=1.6e+02 Score=22.73 Aligned_cols=35 Identities=9% Similarity=0.079 Sum_probs=27.1
Q ss_pred HHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhhhh
Q 027314 186 EAQMENWKTNLAVMASKERQYLQQYNNYKVSIFCY 220 (225)
Q Consensus 186 ~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~~~ 220 (225)
..+..+.++..+.|..|+..|.+.+......++.|
T Consensus 94 ~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~~ 128 (142)
T 3gp4_A 94 KNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDF 128 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 36677777778888889999988887777776654
No 91
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=30.47 E-value=2.4e+02 Score=23.58 Aligned_cols=36 Identities=8% Similarity=0.034 Sum_probs=15.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027314 132 AMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIAR 167 (225)
Q Consensus 132 ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~ 167 (225)
.+.++..++.+-.+...+++.++++=...+.+.+..
T Consensus 25 ~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~ 60 (189)
T 2v71_A 25 SFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRD 60 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443333333333
No 92
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=29.36 E-value=2.8e+02 Score=24.00 Aligned_cols=51 Identities=16% Similarity=0.305 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHhcc
Q 027314 45 TSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYR----SQAARIREILENVG 95 (225)
Q Consensus 45 N~dTl~~L~~LA~~NeaaDee~~Ll~~d~~qk~~Ey~----aea~~l~elLe~vg 95 (225)
-|+..+-|..|...-..-=..-..+.++....+..+. .+..-+.||.+.||
T Consensus 18 ~pe~sr~L~~LIk~EK~vi~s~e~~are~~~~A~~Ls~WG~~edddl~DIsdklg 72 (234)
T 3plt_A 18 GPELARKLSQLVKTEKGVLRAMEVVASERREAAKQLSLWGADNDDDVSDVTDKLG 72 (234)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 3577888888877655443333334444333333222 23345555555553
No 93
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=28.63 E-value=1.7e+02 Score=22.57 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=11.2
Q ss_pred HHHHHHHHhHHHHHhhHHHHHHHHH
Q 027314 187 AQMENWKTNLAVMASKERQYLQQYN 211 (225)
Q Consensus 187 ~q~~ew~r~~k~L~~K~~Ey~~r~~ 211 (225)
.+..+.++..+.|..|+..|++.+.
T Consensus 109 ~~i~~L~~~~~~L~~~i~~~~~~~~ 133 (148)
T 3gpv_A 109 QLIQDTEKNLKKIQQKIAKYEDEIS 133 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555566666665555443
No 94
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=27.57 E-value=2.4e+02 Score=23.40 Aligned_cols=50 Identities=14% Similarity=0.042 Sum_probs=34.6
Q ss_pred CCCChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027314 122 RDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQ 177 (225)
Q Consensus 122 ~dts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~ 177 (225)
+-++|+..+..|++. .+....++++++..|.+.+..+......+.+.|.+
T Consensus 118 ~a~~paE~ireli~~------AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDq 167 (175)
T 3mud_A 118 KVENPAEVIRELICY------CLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQ 167 (175)
T ss_dssp ECSCHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777764 44556677778888888887777776666666543
No 95
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=27.51 E-value=1.5e+02 Score=25.64 Aligned_cols=9 Identities=11% Similarity=0.088 Sum_probs=3.5
Q ss_pred hHHHHHhhH
Q 027314 195 NLAVMASKE 203 (225)
Q Consensus 195 ~~k~L~~K~ 203 (225)
++.-|.+++
T Consensus 89 ~~eeLr~~L 97 (273)
T 3s84_A 89 NADSLQASL 97 (273)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 333333333
No 96
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=27.37 E-value=74 Score=22.87 Aligned_cols=36 Identities=8% Similarity=0.042 Sum_probs=15.9
Q ss_pred HHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHH
Q 027314 172 KRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYL 207 (225)
Q Consensus 172 k~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~ 207 (225)
.+++++|-.-+.....+.+..++.++.|..|+++..
T Consensus 27 E~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 27 EQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444443344444555555555555555555544
No 97
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=26.75 E-value=1.9e+02 Score=23.15 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027314 65 AANIVAADFRQKAAEYR 81 (225)
Q Consensus 65 e~~Ll~~d~~qk~~Ey~ 81 (225)
+|.-=-.++...-.||+
T Consensus 46 qR~rYK~~F~~dy~EYk 62 (140)
T 1xaw_A 46 QRQLYKRNFDTGLQEYK 62 (140)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHH
Confidence 33333344444444443
No 98
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=26.60 E-value=2.5e+02 Score=26.94 Aligned_cols=75 Identities=12% Similarity=0.072 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHh
Q 027314 140 KTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSI 217 (225)
Q Consensus 140 ~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~ 217 (225)
+.++.+...++++-...-+.|++.-... ++..+++.++.-...-.-+.+..+....|+-|+..-.++|..|+..|
T Consensus 67 I~kLkn~L~~~s~s~~~s~~y~~~~~~~---lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l 141 (491)
T 1m1j_A 67 IDNIRQQLADSQNKYKTSNRVIVETINI---LKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSI 141 (491)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHH---HHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444433333 45555555544333334444555555556666555555555555444
No 99
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=26.51 E-value=1.4e+02 Score=19.64 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027314 142 AVEEKRAKVQKESKILLDYTRKAIA 166 (225)
Q Consensus 142 ~~e~~~~r~~~e~~~L~~~l~k~l~ 166 (225)
++|++..+++--++.||..+.+=++
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLla 26 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLA 26 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778777777777555544333
No 100
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=26.27 E-value=1.4e+02 Score=19.51 Aligned_cols=22 Identities=9% Similarity=-0.079 Sum_probs=8.9
Q ss_pred HHHHHhhHHHHHHHHHhHHHHh
Q 027314 196 LAVMASKERQYLQQYNNYKVSI 217 (225)
Q Consensus 196 ~k~L~~K~~Ey~~r~~~~~~~~ 217 (225)
.+=+..++..+++.|..++.-+
T Consensus 35 ~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 35 INEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444443333
No 101
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=26.25 E-value=96 Score=20.73 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=26.9
Q ss_pred hHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhhhh
Q 027314 185 CEAQMENWKTNLAVMASKERQYLQQYNNYKVSIFCY 220 (225)
Q Consensus 185 l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~~~ 220 (225)
....++-.++...-|+.|..+...++..+++.|..|
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~~ 52 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQY 52 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345566666677778888888888888888887765
No 102
>2cg5_B Fatty acid synthase; transferase-hydrolase complex, transferase/hydrolase (comple fatty acid biosynthesis, phosphopantetheine transferase; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A
Probab=25.91 E-value=25 Score=25.91 Aligned_cols=44 Identities=16% Similarity=0.167 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHhhcccCCCCCCCCCCCHHHHHHHHHHHHhhHhh
Q 027314 16 RDAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAK 62 (225)
Q Consensus 16 ~~~~~~s~V~sWL~~kF~~~~~pVP~FErN~dTl~~L~~LA~~Neaa 62 (225)
.|+=..-.+..||.+.|+ -.+|..+.-.-|+..|..++.-+...
T Consensus 38 ~DSL~aVELr~~Le~~fg---i~lp~~~l~~~Ti~~La~~v~~~~~~ 81 (91)
T 2cg5_B 38 LDALMSVEVRQTLERELN---LVLSVREVRQLTLRKLQELSSKADEA 81 (91)
T ss_dssp CCHHHHHHHHHHHHHHHC---CCCCHHHHHTCBHHHHHHHHHCC---
T ss_pred CcchHHHHHHHHHHHHHC---CCCCHHHHHhCCHHHHHHHHhccccc
Confidence 677888899999999995 77888664223888887777665533
No 103
>3o6q_B Stage II sporulation protein SB; GAF domain, toxin-antitoxin, toxin - antitoxin toxin-antitoxin complex; HET: MSE; 2.50A {Bacillus subtilis}
Probab=25.64 E-value=30 Score=23.88 Aligned_cols=17 Identities=6% Similarity=0.237 Sum_probs=14.7
Q ss_pred CCCCCCCCCHHHHHHHH
Q 027314 37 KEVPAFEYTSRSVAHLY 53 (225)
Q Consensus 37 ~pVP~FErN~dTl~~L~ 53 (225)
-.||.|++-|-|.+++-
T Consensus 26 ~s~~~y~vSPhT~rIfK 42 (56)
T 3o6q_B 26 TSVASYQVSPHTARIFK 42 (56)
T ss_dssp EEECCCCCCHHHHHHHH
T ss_pred ccccccccChhHHHHHH
Confidence 35899999999999874
No 104
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=25.40 E-value=2.9e+02 Score=22.96 Aligned_cols=37 Identities=11% Similarity=0.084 Sum_probs=23.6
Q ss_pred HHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhhhhhcc
Q 027314 187 AQMENWKTNLAVMASKERQYLQQYNNYKVSIFCYHYV 223 (225)
Q Consensus 187 ~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~~~~~~ 223 (225)
..+++....+.-+-++..+|...+.+|=..--+||+.
T Consensus 192 ~~~e~~~~~m~~l~~~e~e~~~~L~~~v~aQl~y~~~ 228 (256)
T 1zww_A 192 ESKEIAESSMFNLLEMDIEQVSQLSALVQAQLEYHKQ 228 (256)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555666677777777777666777764
No 105
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=24.99 E-value=4.4e+02 Score=24.85 Aligned_cols=19 Identities=5% Similarity=0.009 Sum_probs=9.4
Q ss_pred hHHHHHhhHHHHHHHHHhH
Q 027314 195 NLAVMASKERQYLQQYNNY 213 (225)
Q Consensus 195 ~~k~L~~K~~Ey~~r~~~~ 213 (225)
.+..+..|+......+..+
T Consensus 176 ~~~~l~~ki~~l~~~~~~~ 194 (464)
T 1m1j_B 176 VIDSLHKKIQKLENAIATQ 194 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555443
No 106
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=24.29 E-value=96 Score=20.58 Aligned_cols=8 Identities=75% Similarity=1.045 Sum_probs=4.2
Q ss_pred HHHHHHHH
Q 027314 160 YTRKAIAR 167 (225)
Q Consensus 160 ~l~k~l~~ 167 (225)
|++|.|++
T Consensus 7 ylrkkiar 14 (52)
T 3he5_B 7 YLRKKIAR 14 (52)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45555555
No 107
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=24.01 E-value=1.8e+02 Score=22.27 Aligned_cols=16 Identities=13% Similarity=-0.031 Sum_probs=8.3
Q ss_pred HHhHHHHHhhHHHHHH
Q 027314 193 KTNLAVMASKERQYLQ 208 (225)
Q Consensus 193 ~r~~k~L~~K~~Ey~~ 208 (225)
.+..+|.=.|+|...-
T Consensus 38 EkERDFYF~KLRdIEi 53 (106)
T 4e61_A 38 EIEREFYFNKLRDIEI 53 (106)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445566666655443
No 108
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=23.88 E-value=2.2e+02 Score=20.86 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=16.5
Q ss_pred CChhhHHHHHHHhhhhHHHHHHHHHH
Q 027314 124 TELSSFLVAMGDISLRKTAVEEKRAK 149 (225)
Q Consensus 124 ts~~sl~~ai~dLt~~~~~~e~~~~r 149 (225)
+.+..|+..+.++...+..+.....+
T Consensus 5 ~~m~~F~~~v~~I~~~i~~i~~~v~~ 30 (127)
T 1ez3_A 5 RFMDEFFEQVEEIRGFIDKIAENVEE 30 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777776666666665553
No 109
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=22.49 E-value=2e+02 Score=20.03 Aligned_cols=27 Identities=4% Similarity=-0.082 Sum_probs=12.2
Q ss_pred HhHHHHHhhHHHHHHHHHhHHHHhhhh
Q 027314 194 TNLAVMASKERQYLQQYNNYKVSIFCY 220 (225)
Q Consensus 194 r~~k~L~~K~~Ey~~r~~~~~~~~~~~ 220 (225)
...+.+..|+.+.+.....++.++..|
T Consensus 46 ~~~~~l~~~i~~L~~~~~~L~~~~~~~ 72 (99)
T 1q08_A 46 ERLQEVEARIAELQSMQRSLQRLNDAC 72 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 110
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=22.32 E-value=2.8e+02 Score=21.65 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=26.3
Q ss_pred CChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027314 124 TELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIAR 167 (225)
Q Consensus 124 ts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~ 167 (225)
|+..+....+..|..+...++++-..+=.+-+..-+.=.+.++.
T Consensus 2 ~~a~~V~s~l~~LEaeyq~L~~kE~qrynqeka~AE~A~~~L~~ 45 (119)
T 2avr_X 2 TDAASLVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQ 45 (119)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778899999999998888866554333333333333333333
No 111
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=22.11 E-value=2.6e+02 Score=25.10 Aligned_cols=28 Identities=18% Similarity=0.147 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 027314 153 ESKILLDYTRKAIARLTYLKRTLGQLED 180 (225)
Q Consensus 153 e~~~L~~~l~k~l~~~~~Lk~~L~~Le~ 180 (225)
++..|+..+...-.++..|+.++.+++.
T Consensus 27 ~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 27 QIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334555555543
No 112
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=22.09 E-value=3.8e+02 Score=23.11 Aligned_cols=43 Identities=12% Similarity=0.150 Sum_probs=25.6
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCChhhHHHHHHHhhhhHHHHH
Q 027314 102 PSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVE 144 (225)
Q Consensus 102 s~~G~~aL~aLa~~A~~L~~~dts~~sl~~ai~dLt~~~~~~e 144 (225)
+..|..+++++..+|..-.-.......||.++..+...--.+|
T Consensus 51 ~~a~~af~Da~qKvad~A~~s~g~s~elG~~L~~i~~~hr~ie 93 (253)
T 2d1l_A 51 VVAAAAFLDAFQKVADMATNTRGGTREIGSALTRMCMRHRSIE 93 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccCCcchHHHHHHHHHHHHHHHHHH
Confidence 4567888888888885443222234567777766554433333
No 113
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=21.81 E-value=1.7e+02 Score=22.53 Aligned_cols=8 Identities=38% Similarity=0.671 Sum_probs=3.7
Q ss_pred Hhcccccc
Q 027314 92 ENVGLAQE 99 (225)
Q Consensus 92 e~vgls~~ 99 (225)
|..|+-+.
T Consensus 23 e~~GLl~p 30 (142)
T 3gp4_A 23 ERIGLIPP 30 (142)
T ss_dssp HHHTSSCC
T ss_pred HHCCCCCC
Confidence 44455443
No 114
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=21.69 E-value=2.3e+02 Score=20.44 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 027314 156 ILLDYTRKAIARLTYLKRTLGQLED 180 (225)
Q Consensus 156 ~L~~~l~k~l~~~~~Lk~~L~~Le~ 180 (225)
.+++.+++-+.| .+.|+.|.+
T Consensus 20 iM~~NI~kvL~R----gekL~~L~~ 40 (91)
T 3hd7_A 20 IMRVNVDKVLER----DQKLSELDD 40 (91)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHc----cchHHHHHH
Confidence 445555555555 666666663
No 115
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=21.58 E-value=1.2e+02 Score=26.60 Aligned_cols=43 Identities=14% Similarity=0.238 Sum_probs=27.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc
Q 027314 133 MGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDV 182 (225)
Q Consensus 133 i~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~ 182 (225)
+-+|..++..+..++.+ +...++.+++++.+ |+++|++|+.-|
T Consensus 56 l~eL~~ql~~L~arNe~----L~~~Lk~ar~El~~---LkeElerL~sPP 98 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSK----LMETLKEARQQLLA---LREEVDRLGQPP 98 (251)
T ss_dssp HHHHHHHHHHHTTTHHH----HHHHHHHHHHHHHH---HHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH---HHHHHHHhcCCC
Confidence 44566666666666664 44444445777777 699999998543
No 116
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=21.45 E-value=1.3e+02 Score=25.36 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=11.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHH
Q 027314 133 MGDISLRKTAVEEKRAKVQKESKIL 157 (225)
Q Consensus 133 i~dLt~~~~~~e~~~~r~~~e~~~L 157 (225)
|..|+.+.+.+.++..-.+.|++.|
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L 46 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQL 46 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544444444444
No 117
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=21.17 E-value=1.9e+02 Score=19.28 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=24.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027314 131 VAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLE 179 (225)
Q Consensus 131 ~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le 179 (225)
..+-+|..++..+..++.+ +...++.-+.+|.. |++.|++|-
T Consensus 9 ~r~~~l~~~l~~L~~rN~r----L~~~L~~AR~el~~---Lkeele~La 50 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSK----LMETLKEARQQLLA---LREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH---HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH---HHHHHHHhh
Confidence 3444566666666666663 44444444555555 688888763
No 118
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=21.13 E-value=1.9e+02 Score=19.17 Aligned_cols=38 Identities=16% Similarity=0.102 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027314 141 TAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQL 178 (225)
Q Consensus 141 ~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~L 178 (225)
--+|....++++++..|.+.+..+-.+...+.+.|.+.
T Consensus 8 efAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~t 45 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQKLKYKAISEELDHA 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 35678888899999999888888877777777777654
No 119
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP: d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A* 1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A* 1lpq_A* 1rr8_C* 1ej9_A*
Probab=21.02 E-value=35 Score=33.52 Aligned_cols=71 Identities=20% Similarity=0.282 Sum_probs=17.7
Q ss_pred HHHHHHhccccccCCChhHHHHHHHHHHHHHHhCCCCCChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 027314 87 IREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKIL 157 (225)
Q Consensus 87 l~elLe~vgls~~sLs~~G~~aL~aLa~~A~~L~~~dts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L 157 (225)
+++.|..++....+.+..-..+-.+.-.+|.+.|=.-+-|-++...|-.|...+-..+++..+++.++...
T Consensus 424 a~~~L~~~~~~~~s~~ek~~~yn~Anr~VAiLCNHqR~vpK~~~~~m~kl~~ki~~~~~~~~~~~~~l~~~ 494 (591)
T 1a31_A 424 LQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSA 494 (591)
T ss_dssp HHHHHHHHCCTTCCHHHHHHHHHHHHHHC------------------------------------------
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555433335555666778888889988888888899999999999988888888887777666643
No 120
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=20.96 E-value=2e+02 Score=20.76 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027314 143 VEEKRAKVQKESKILLDYTRK 163 (225)
Q Consensus 143 ~e~~~~r~~~e~~~L~~~l~k 163 (225)
+|++..+++--++.||..+.+
T Consensus 5 lEEKv~~LE~sld~LQTrfAR 25 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFAR 25 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666544444
No 121
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=20.86 E-value=4.4e+02 Score=23.36 Aligned_cols=40 Identities=10% Similarity=0.037 Sum_probs=20.0
Q ss_pred ChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027314 125 ELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKA 164 (225)
Q Consensus 125 s~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~ 164 (225)
+...|...|.+|.......+.+..++-.++..+...+...
T Consensus 117 d~~~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d 156 (346)
T 2nrj_A 117 DGETLKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHD 156 (346)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555555555555554444444444444333
No 122
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=20.80 E-value=2.2e+02 Score=20.89 Aligned_cols=16 Identities=13% Similarity=0.248 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 027314 141 TAVEEKRAKVQKESKI 156 (225)
Q Consensus 141 ~~~e~~~~r~~~e~~~ 156 (225)
.++++.+.++..+++.
T Consensus 46 ~~Le~EN~~Lr~~v~~ 61 (87)
T 1hjb_A 46 LELTAENERLQKKVEQ 61 (87)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444433333333
No 123
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=20.75 E-value=1.8e+02 Score=18.82 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=11.3
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHH
Q 027314 134 GDISLRKTAVEEKRAKVQKESKIL 157 (225)
Q Consensus 134 ~dLt~~~~~~e~~~~r~~~e~~~L 157 (225)
.+++.+--++|+....++.+++.|
T Consensus 12 sel~~r~e~LE~Ri~~LE~KLd~L 35 (43)
T 2pnv_A 12 SDLNERSEDFEKRIVTLETKLETL 35 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHH
Confidence 444444445555544444444444
No 124
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=20.39 E-value=3.1e+02 Score=23.45 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHhHHHHhhhh
Q 027314 201 SKERQYLQQYNNYKVSIFCY 220 (225)
Q Consensus 201 ~K~~Ey~~r~~~~~~~~~~~ 220 (225)
.|..+|.+-+..-+..|..|
T Consensus 162 ~~~~~~~e~v~~~~~~le~~ 181 (253)
T 2ykt_A 162 DKELQYIDAISNKQGELENY 181 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56677777776666666544
No 125
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=20.12 E-value=1.2e+02 Score=27.33 Aligned_cols=17 Identities=12% Similarity=-0.033 Sum_probs=7.4
Q ss_pred HHhhHHHHHHHHHhHHH
Q 027314 199 MASKERQYLQQYNNYKV 215 (225)
Q Consensus 199 L~~K~~Ey~~r~~~~~~ 215 (225)
+.+|+.+..++|..++.
T Consensus 38 ~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 38 NQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
Done!