Query 027314
Match_columns 225
No_of_seqs 82 out of 84
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 13:11:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027314.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027314hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vcsa1 a.47.2.1 (A:8-96) Vesi 61.2 6.1 0.00045 27.4 4.9 43 171-219 43-85 (89)
2 d1hx1b_ a.7.7.1 (B:) BAG-famil 52.7 18 0.0013 26.4 6.4 90 126-218 20-110 (112)
3 d1wfda_ a.7.14.1 (A:) Hypothet 46.2 9.8 0.00071 26.2 3.8 24 196-219 58-81 (93)
4 d1seta1 a.2.7.1 (A:1-110) Sery 42.7 46 0.0034 22.8 8.5 68 140-220 30-97 (110)
5 d1k4ta1 a.2.8.1 (A:641-712) Eu 38.6 51 0.0037 22.1 7.3 47 133-179 4-62 (72)
6 d1g7oa1 a.45.1.1 (A:76-215) Gl 31.3 83 0.006 23.2 7.4 108 22-137 9-130 (140)
7 d1e52a_ a.2.9.1 (A:) C-termina 31.2 24 0.0018 22.5 3.6 30 186-217 23-52 (56)
8 d1wr0a1 a.7.14.1 (A:5-81) Vacu 27.7 15 0.0011 24.2 2.1 22 196-217 55-76 (77)
9 d1ykhb1 a.252.1.1 (B:2-130) RN 23.7 1.2E+02 0.0088 21.7 7.0 44 123-166 83-126 (129)
10 d1grja1 a.2.1.1 (A:2-79) GreA 22.9 1E+02 0.0073 20.5 6.5 62 146-212 9-70 (78)
11 d2gxba1 a.4.5.19 (A:140-198) Z 22.1 7.7 0.00056 25.6 -0.3 27 25-60 19-45 (59)
12 d1hzfa_ a.102.4.4 (A:) C4adg f 21.8 38 0.0028 26.5 3.9 36 19-58 285-320 (326)
13 d2efla1 a.238.1.4 (A:1-288) Fo 21.0 1.5E+02 0.011 21.8 12.6 17 204-220 188-204 (288)
14 d1cxzb_ a.2.6.1 (B:) Protein k 20.5 1.1E+02 0.0077 21.1 5.6 22 194-215 63-84 (86)
No 1
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=61.17 E-value=6.1 Score=27.44 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=29.9
Q ss_pred HHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhhh
Q 027314 171 LKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIFC 219 (225)
Q Consensus 171 Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~~ 219 (225)
..+.|.+++.++..+|... ...|.+|+++|+..+.+++.-+.+
T Consensus 43 A~ell~qMelEvr~~p~s~------R~~~~~klr~Yk~dl~~lk~elk~ 85 (89)
T d1vcsa1 43 ARELLEQMDLEVREIPPQS------RGMYSNRMRSYKQEMGKLETDFKR 85 (89)
T ss_dssp HHHHHHHHHHHHTTSCTTT------HHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666666666654444322 345778999999999999987765
No 2
>d1hx1b_ a.7.7.1 (B:) BAG-family molecular chaperon regulator-1, BAG1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.75 E-value=18 Score=26.42 Aligned_cols=90 Identities=8% Similarity=0.149 Sum_probs=57.9
Q ss_pred hhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHH
Q 027314 126 LSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAI-ARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKER 204 (225)
Q Consensus 126 ~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l-~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~ 204 (225)
..++..-+-+++.++..+++.--.-+.+.+++ ..++|.+ .-.+.+-+.|+.|. .-.+|....+=..+.|.|-.|+-
T Consensus 20 v~~~~kkL~~l~~eL~giekGFL~~~l~~ea~-~kl~krik~~~E~~Mk~LE~LD--sl~lp~~~~~~R~kRK~lV~~iQ 96 (112)
T d1hx1b_ 20 VEKIADQLEELNKELTGIQQGFLPKDLQAEAL-CKLDRRVKATIEQFMKILEEID--TLILPENFKDSRLKRKGLVKKVQ 96 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHT--TCCCCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh--hccCcHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777775522223334444 2233333 22334566677776 33455566667778899999999
Q ss_pred HHHHHHHhHHHHhh
Q 027314 205 QYLQQYNNYKVSIF 218 (225)
Q Consensus 205 Ey~~r~~~~~~~~~ 218 (225)
.|..|...+.+.|+
T Consensus 97 ~~L~q~D~l~~~i~ 110 (112)
T d1hx1b_ 97 AFLAECDTVEQNIC 110 (112)
T ss_dssp HHHHHHHHHHTTSS
T ss_pred HHHHHhHHHHHHHc
Confidence 99999999887765
No 3
>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=46.23 E-value=9.8 Score=26.22 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=21.1
Q ss_pred HHHHHhhHHHHHHHHHhHHHHhhh
Q 027314 196 LAVMASKERQYLQQYNNYKVSIFC 219 (225)
Q Consensus 196 ~k~L~~K~~Ey~~r~~~~~~~~~~ 219 (225)
...+..|+.||.+|...++..|..
T Consensus 58 k~~l~~k~~eYl~RAE~LK~~l~~ 81 (93)
T d1wfda_ 58 RCVLRTKISGYMDRAENIKKYLDQ 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999998864
No 4
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=42.75 E-value=46 Score=22.75 Aligned_cols=68 Identities=4% Similarity=0.100 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHhhh
Q 027314 140 KTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKVSIFC 219 (225)
Q Consensus 140 ~~~~e~~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~~~ 219 (225)
+.++.+++..++.+++.| +.+... +-+.+++.+.+ ...+-...++-++.++.++..++..++..+..
T Consensus 30 i~~ld~~rr~l~~~~e~l----~~~rN~---~sk~i~k~~~~------~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~ 96 (110)
T d1seta1 30 LLALDREVQELKKRLQEV----QTERNQ---VAKRVPKAPPE------EKEALIARGKALGEEAKRLEEALREKEARLEA 96 (110)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHH---HHHHGGGCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHH---HHHHHHHhhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666 333333 34555554421 22344555777788888888887777766654
Q ss_pred h
Q 027314 220 Y 220 (225)
Q Consensus 220 ~ 220 (225)
+
T Consensus 97 ~ 97 (110)
T d1seta1 97 L 97 (110)
T ss_dssp H
T ss_pred H
Confidence 4
No 5
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.65 E-value=51 Score=22.10 Aligned_cols=47 Identities=19% Similarity=0.192 Sum_probs=26.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHhhh
Q 027314 133 MGDISLRKTAVEEKRAKVQKESKILLD------------YTRKAIARLTYLKRTLGQLE 179 (225)
Q Consensus 133 i~dLt~~~~~~e~~~~r~~~e~~~L~~------------~l~k~l~~~~~Lk~~L~~Le 179 (225)
|-+|..-+-.-.++...++++++.+.. .+++.--.+.+|+++|.+|+
T Consensus 4 MenLq~KI~~Kk~qi~~a~~e~K~ak~d~k~~~~~k~k~~~ekKkK~leRL~EQL~KLe 62 (72)
T d1k4ta1 4 MMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLE 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555666666666555542 22233333444788888777
No 6
>d1g7oa1 a.45.1.1 (A:76-215) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}
Probab=31.33 E-value=83 Score=23.21 Aligned_cols=108 Identities=11% Similarity=0.184 Sum_probs=53.9
Q ss_pred HHHHHHHHhhcccC---------CCCCCCCCCCHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHhHH-HHHHHH-
Q 027314 22 ADVKAWLASQFEAS---------AKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQA-ARIREI- 90 (225)
Q Consensus 22 s~V~sWL~~kF~~~---------~~pVP~FErN~dTl~~L~~LA~~NeaaDee~~Ll~~d~~qk~~Ey~aea-~~l~el- 90 (225)
..|..|+++.++.. --+.|+|. +|+-.++-.+ ++... ..-..+.+ ....+|-.+- ..++++
T Consensus 9 ~~I~~W~k~v~~~~~kL~~PR~~~~~lpEF~-T~~A~~~f~~----kKe~~--~g~f~~~l-~~t~~li~~l~~~L~~L~ 80 (140)
T d1g7oa1 9 PAIEEWLRKVNGYANKLLLPRFAKSAFDEFS-TPAARKYFVD----KKEAS--AGNFADLL-AHSDGLIKNISDDLRALD 80 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCGGGC-SHHHHHHHHT----TTTTT--CTHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCCCcccC-CHHHHHHHHH----hhhhh--cCCHHHHH-HcCHHHHHHHHHHHHHHH
Confidence 36999999998632 15899998 4454444322 11111 11111111 1122222111 222222
Q ss_pred --HHhccccccCCChhHHHHHHHHHHHHHHhCCC-CCChhhHHHHHHHhh
Q 027314 91 --LENVGLAQESLPSNVVSSAQVLANVANLLNIR-DTELSSFLVAMGDIS 137 (225)
Q Consensus 91 --Le~vgls~~sLs~~G~~aL~aLa~~A~~L~~~-dts~~sl~~ai~dLt 137 (225)
+..-+.....||=+.....-.|=++.++=|+. .|.+..++..|...|
T Consensus 81 ~ll~~~~~~~~~ls~DDi~lFp~LR~ltivkgi~~p~~v~~Y~~~~s~~t 130 (140)
T d1g7oa1 81 KLIVKPNAVNGELSEDDIQLFPLLRNLTLVAGINWPSRVADYRDNMAKQT 130 (140)
T ss_dssp HHCSSSSCTTSSCCHHHHHHHHHHHHHHTSTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHhCccccCCCccHHHHHHHHHHhhhHhhcCCCCCHHHHHHHHHHHHHh
Confidence 11112223445555555556666777777775 457777777776655
No 7
>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}
Probab=31.22 E-value=24 Score=22.50 Aligned_cols=30 Identities=20% Similarity=0.178 Sum_probs=22.4
Q ss_pred HHHHHHHHHhHHHHHhhHHHHHHHHHhHHHHh
Q 027314 186 EAQMENWKTNLAVMASKERQYLQQYNNYKVSI 217 (225)
Q Consensus 186 ~~q~~ew~r~~k~L~~K~~Ey~~r~~~~~~~~ 217 (225)
+.+|..-..++.|= |...|+|+|..++..|
T Consensus 23 e~~M~~aa~~l~FE--~AA~~RD~I~~l~~~l 52 (56)
T d1e52a_ 23 EGLMMQHAQNLEFE--EAAQIRDQLHQLRELF 52 (56)
T ss_dssp HHHHHHHHHTTCHH--HHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHH--HHHHHHHHHHHHHHHH
Confidence 36677777777774 5578999999998776
No 8
>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.71 E-value=15 Score=24.24 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=18.6
Q ss_pred HHHHHhhHHHHHHHHHhHHHHh
Q 027314 196 LAVMASKERQYLQQYNNYKVSI 217 (225)
Q Consensus 196 ~k~L~~K~~Ey~~r~~~~~~~~ 217 (225)
...+..|+.+|.+|...++..|
T Consensus 55 k~~l~~k~~~Yl~RAE~LK~~l 76 (77)
T d1wr0a1 55 KQSIRAKCTEYLDRAEKLKEYL 76 (77)
T ss_dssp GHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3568899999999999998765
No 9
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.68 E-value=1.2e+02 Score=21.70 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=34.1
Q ss_pred CCChhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027314 123 DTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIA 166 (225)
Q Consensus 123 dts~~sl~~ai~dLt~~~~~~e~~~~r~~~e~~~L~~~l~k~l~ 166 (225)
+.+...-...|-.|..+..++++.+.++=++-+.|++.+...|.
T Consensus 83 ~~see~Q~~~i~~Le~E~~~~~~el~~~v~e~e~ll~~i~~~i~ 126 (129)
T d1ykhb1 83 DVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIE 126 (129)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677888899999999998888888888888777776654
No 10
>d1grja1 a.2.1.1 (A:2-79) GreA transcript cleavage protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=22.92 E-value=1e+02 Score=20.47 Aligned_cols=62 Identities=18% Similarity=0.227 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCchHHHHHHHHHhHHHHHhhHHHHHHHHHh
Q 027314 146 KRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNN 212 (225)
Q Consensus 146 ~~~r~~~e~~~L~~~l~k~l~~~~~Lk~~L~~Le~~~a~l~~q~~ew~r~~k~L~~K~~Ey~~r~~~ 212 (225)
...+++.+++.|..--+.+++.--.--+..+.|..+ ++-.+- .....++.+++++..+++++
T Consensus 9 g~~~L~~EL~~L~~~~rpei~~~I~~Ar~~GDlsEN-aeY~aA----Ke~q~~~e~RI~eLe~~L~~ 70 (78)
T d1grja1 9 GAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKEN-AEYHAA----REQQGFCEGRIKDIEAKLSN 70 (78)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGC-HHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHcCChhhh-HHHHHH----HHHHHHHHHHHHHHHHHHhC
Confidence 445566677776554454544432223333444433 222211 22346677777777777654
No 11
>d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.09 E-value=7.7 Score=25.57 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=22.6
Q ss_pred HHHHHhhcccCCCCCCCCCCCHHHHHHHHHHHHhhH
Q 027314 25 KAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQ 60 (225)
Q Consensus 25 ~sWL~~kF~~~~~pVP~FErN~dTl~~L~~LA~~Ne 60 (225)
.-||+++|+ ||.=|+| ++||.|...+.
T Consensus 19 A~~LA~kl~-----vpKk~iN----r~LYsL~~kgk 45 (59)
T d2gxba1 19 AHDLSGKLG-----TPKKEIN----RVLYSLAKKGK 45 (59)
T ss_dssp HHHHHHHHT-----CCHHHHH----HHHHHHHHTTS
T ss_pred HHHHHHHhC-----CcHHHHH----HHHHHHHHccc
Confidence 359999999 8888888 89999987654
No 12
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.77 E-value=38 Score=26.46 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCCCCHHHHHHHHHHHHh
Q 027314 19 ARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATL 58 (225)
Q Consensus 19 ~~~s~V~sWL~~kF~~~~~pVP~FErN~dTl~~L~~LA~~ 58 (225)
..+..+..||.++-.+.| .|.-+.+|+-+|++|+..
T Consensus 285 ~~~~~~~~WL~~qr~~~G----gw~STQdT~~al~AL~~y 320 (326)
T d1hzfa_ 285 EMADQASAWLTRQGSFQG----GFRSTQDTVIALDALSAY 320 (326)
T ss_dssp HHHHHHHHHHHHHTTSTT----CSCSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhccCCC----CCccHHHHHHHHHHHHHH
Confidence 455678899999864212 399999999999999976
No 13
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.98 E-value=1.5e+02 Score=21.81 Aligned_cols=17 Identities=12% Similarity=0.251 Sum_probs=11.8
Q ss_pred HHHHHHHHhHHHHhhhh
Q 027314 204 RQYLQQYNNYKVSIFCY 220 (225)
Q Consensus 204 ~Ey~~r~~~~~~~~~~~ 220 (225)
.+|+..+.++.....+|
T Consensus 188 ~~Y~~~v~~~n~~~~~~ 204 (288)
T d2efla1 188 ADYSSILQKFNHEQHEY 204 (288)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46888887777666554
No 14
>d1cxzb_ a.2.6.1 (B:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.48 E-value=1.1e+02 Score=21.08 Aligned_cols=22 Identities=14% Similarity=-0.011 Sum_probs=17.8
Q ss_pred HhHHHHHhhHHHHHHHHHhHHH
Q 027314 194 TNLAVMASKERQYLQQYNNYKV 215 (225)
Q Consensus 194 r~~k~L~~K~~Ey~~r~~~~~~ 215 (225)
.-+++-..|+.+.++++..+.+
T Consensus 63 ~eL~~sN~kL~~L~~eL~eLna 84 (86)
T d1cxzb_ 63 LLLRGSSRRLDLLHQQLQELHA 84 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3478888999999999888764
Done!