BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027315
(225 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3V1H|A Chain A, Structure Of The H258y Mutant Of
Phosphatidylinositol-Specific Phospholipase C From
Staphylococcus Aureus
Length = 306
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 87 LTPSHGSTPVHEK--SFIEDPAPQPQLDKIPHTDSV------PDSISKPSPTLFELFRES 138
++ HG +H + F++D + L P+ V DS SK + T E+FRE
Sbjct: 74 ISVHHGMVYLHHELGKFLDDA--KYYLSAYPNETIVMSMKKDYDSDSKVTKTFEEIFREY 131
Query: 139 FGDNPANGNQNLHGHNEAIPTISPPKSTRNPFTRSSET 176
+ +NP N G N A PT+ K F R T
Sbjct: 132 YYNNPQYQNLFYTGSN-ANPTLKETKGKIVLFNRMGGT 168
>pdb|4F2U|A Chain A, Structure Of The N254yH258Y DOUBLE MUTANT OF THE
Phosphatidylinositol-Specific Phospholipase C From
S.Aureus
Length = 310
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 87 LTPSHGSTPVHEK--SFIEDPAPQPQLDKIPHTDSV------PDSISKPSPTLFELFRES 138
++ HG +H + F++D + L P+ V DS SK + T E+FRE
Sbjct: 76 ISVHHGMVYLHHELGKFLDDA--KYYLSAYPNETIVMSMKKDYDSDSKVTKTFEEIFREY 133
Query: 139 FGDNPANGNQNLHGHNEAIPTISPPKSTRNPFTRSSET 176
+ +NP N G N A PT+ K F R T
Sbjct: 134 YYNNPQYQNLFYTGSN-ANPTLKETKGKIVLFNRMGGT 170
>pdb|3V16|A Chain A, An Intramolecular Pi-Cation Latch In
Phosphatidylinositol-Specific Phospholipase C From
S.Aureus Controls Substrate Access To The Active Site
Length = 303
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 87 LTPSHGSTPVHEK--SFIEDPAPQPQLDKIPHTDSV------PDSISKPSPTLFELFRES 138
++ HG +H + F++D + L P+ V DS SK + T E+FRE
Sbjct: 76 ISVHHGMVYLHHELGKFLDDA--KYYLSAYPNETIVMSMKKDYDSDSKVTKTFEEIFREY 133
Query: 139 FGDNPANGNQNLHGHNEAIPTISPPKSTRNPFTRSSET 176
+ +NP N G N A PT+ K F R T
Sbjct: 134 YYNNPQYQNLFYTGSN-ANPTLKETKGKIVLFNRMGGT 170
>pdb|4F2B|A Chain A, Modulation Of S.Aureus Phosphatidylinositol-Specific
Phospholipase C Membrane Binding
pdb|4F2B|B Chain B, Modulation Of S.Aureus Phosphatidylinositol-Specific
Phospholipase C Membrane Binding
Length = 310
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 87 LTPSHGSTPVHEK--SFIEDPAPQPQLDKIPHTDSV------PDSISKPSPTLFELFRES 138
++ HG +H + F++D + L P+ V DS SK + T E+FRE
Sbjct: 76 ISVHHGMVYLHHELGKFLDDA--KYYLSAYPNETIVMSMKKDYDSDSKVTKTFEEIFREY 133
Query: 139 FGDNPANGNQNLHGHNEAIPTISPPKSTRNPFTRSSET 176
+ +NP N G N A PT+ K F R T
Sbjct: 134 YYNNPQYQNLFYTGSN-ANPTLKETKGKIVLFNRMGGT 170
>pdb|3V18|A Chain A, Structure Of The Phosphatidylinositol-Specific
Phospholipase C From Staphylococcus Aureus
Length = 304
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 87 LTPSHGSTPVHEK--SFIEDPAPQPQLDKIPHTDSV------PDSISKPSPTLFELFRES 138
++ HG +H + F++D + L P+ V DS SK + T E+FRE
Sbjct: 75 ISVHHGMVYLHHELGKFLDDA--KYYLSAYPNETIVMSMKKDYDSDSKVTKTFEEIFREY 132
Query: 139 FGDNPANGNQNLHGHNEAIPTISPPKSTRNPFTRSSET 176
+ +NP N G N A PT+ K F R T
Sbjct: 133 YYNNPQYQNLFYTGSN-ANPTLKETKGKIVLFNRMGGT 169
>pdb|4F2T|A Chain A, Modulation Of S.Aureus Phosphatidylinositol-Specific
Phospholipase C Membrane Binding
Length = 310
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 87 LTPSHGSTPVHEK--SFIEDPAPQPQLDKIPHTDSV------PDSISKPSPTLFELFRES 138
++ HG +H + F++D + L P+ V DS SK + T E+FRE
Sbjct: 76 ISVHHGMVYLHHELGKFLDDA--KYYLSAYPNETIVMSMKKDYDSDSKVTKTFEEIFREY 133
Query: 139 FGDNPANGNQNLHGHNEAIPTISPPKSTRNPFTRSSET 176
+ +NP N G N A PT+ K F R T
Sbjct: 134 YYNNPQYQNLFYTGSN-ANPTLKETKGKIVLFNRMGGT 170
>pdb|1CP9|B Chain B, Crystal Structure Of Penicillin G Acylase From The Bro1
Mutant Strain Of Providencia Rettgeri
Length = 553
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 85 GDLTPSHGSTPVHEKSFIEDPAPQPQLDKIPHTDSVPDSISKPSPTLFELFRESFGDNPA 144
G L S G+ ++E S +ED +P Q + D I K T ++ E +GDNPA
Sbjct: 385 GSLNISTGAKLLYE-SLLEDKSPISQSIDLFSGQPQNDVIRKTLNTTYQKMIEKYGDNPA 443
Query: 145 N 145
N
Sbjct: 444 N 444
>pdb|3MMD|A Chain A, Crystal Structure Of The W241a Mutant Of Xylanase From
Geobacillus Stearothermophilus T-6 (Xt6) Complexed With
Hydrolyzed Xylopentaose
Length = 379
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 68 DSHPWLDSDCEDYFSVNGDLT 88
D+H WLDS + Y+ NG++
Sbjct: 320 DNHTWLDSRADVYYDANGNVV 340
>pdb|1R86|A Chain A, Crystal Structure Of The Extracellular Xylanase From
Geobacillus Stearothermophilus T-6 (Xt6, Monoclinic
Form): The E159aE265A MUTANT AT 1.8A RESOLUTION
Length = 379
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 68 DSHPWLDSDCEDYFSVNGDLT 88
D+H WLDS + Y+ NG++
Sbjct: 320 DNHTWLDSRADVYYDANGNVV 340
>pdb|1HIZ|A Chain A, Xylanase T6 (Xt6) From Bacillus Stearothermophilus
pdb|1R85|A Chain A, Crystal Structure Of The Extracellular Xylanase From
Geobacillus Stearothermophilus T-6 (Xt6): The Wt Enzyme
(Monoclinic Form) At 1.45a Resolution
pdb|1R87|A Chain A, Crystal Structure Of The Extracellular Xylanase From
Geobacillus Stearothermophilus T-6 (Xt6, Monoclinic
Form): The Complex Of The Wt Enzyme With Xylopentaose At
1.67a Resolution
Length = 379
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 68 DSHPWLDSDCEDYFSVNGDLT 88
D+H WLDS + Y+ NG++
Sbjct: 320 DNHTWLDSRADVYYDANGNVV 340
>pdb|2DHS|A Chain A, Solution Structure Of Nucleic Acid Binding Protein
Cugbp1ab And Its Binding Study With Dna And Rna
Length = 187
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 22/57 (38%)
Query: 157 IPTISPPKSTRNPFTRSSETTPYRVSHDRKENSIQSAQCCIPSFMRSRSFSERKKRL 213
+P K R F + V DR +N QS CC +F ++ E + L
Sbjct: 23 VPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNAL 79
>pdb|3NNH|A Chain A, Crystal Structure Of The Cugbp1 Rrm1 With Guuguuuuguuu Rna
pdb|3NNH|C Chain C, Crystal Structure Of The Cugbp1 Rrm1 With Guuguuuuguuu Rna
pdb|3NNH|B Chain B, Crystal Structure Of The Cugbp1 Rrm1 With Guuguuuuguuu Rna
pdb|3NNH|D Chain D, Crystal Structure Of The Cugbp1 Rrm1 With Guuguuuuguuu Rna
Length = 88
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 22/57 (38%)
Query: 157 IPTISPPKSTRNPFTRSSETTPYRVSHDRKENSIQSAQCCIPSFMRSRSFSERKKRL 213
+P K R F + V DR +N QS CC +F ++ E + L
Sbjct: 11 VPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNAL 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.126 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,796,953
Number of Sequences: 62578
Number of extensions: 280786
Number of successful extensions: 390
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 372
Number of HSP's gapped (non-prelim): 26
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.9 bits)