BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027315
         (225 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9LK32|Y3721_ARATH Uncharacterized protein At3g27210 OS=Arabidopsis thaliana GN=Y-2
           PE=1 SV=1
          Length = 234

 Score = 50.4 bits (119), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 74/160 (46%), Gaps = 22/160 (13%)

Query: 63  EEAFLDSHPWLDSDCEDYF-SVNGDLTPSHGSTPVHEKSFIEDPAPQPQLDKIPHTDSVP 121
           +E F DS PWL SD +D F SVNGD TPS G+TP   KS   D  P+   + I H     
Sbjct: 82  DETFFDSQPWLQSDSDDDFHSVNGDFTPSLGNTP---KSSFSDRPPRFH-NLIFHEKKPS 137

Query: 122 DSISKPSPT-----LFELFRESFGDNPANGNQNLHGHNEAIPTISPPKSTRNPFTRSSET 176
              S P+P      L ELFR+S         +   G + AI T  P  S  N    S E 
Sbjct: 138 RGSSSPAPLPRRKKLGELFRDSI-----REEREESGSSSAIST--PYLSGAN----SREF 186

Query: 177 TPYRVSHDRKENSIQSAQCCIPSFMR-SRSFSERKKRLSS 215
               +  + K+ S      C+P F     SF ER+K++SS
Sbjct: 187 NDTAIEKEEKKKSNWHHHRCLPGFSSCGGSFMERRKKMSS 226


>sp|Q7UKY0|ILVC_RHOBA Ketol-acid reductoisomerase OS=Rhodopirellula baltica (strain SH1)
           GN=ilvC PE=3 SV=1
          Length = 334

 Score = 31.2 bits (69), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 21/100 (21%)

Query: 74  DSDCEDYF-----SVNGDLTPSHGSTPVHEKSFIEDPAPQPQLDKIPHTDSVPDSISKPS 128
           DS CE        S N DL  SHG  P+   S  E       ++ +     +PD +    
Sbjct: 39  DSGCEVIIGQRPGSANYDLAVSHGFEPM---SIAEATKAADVINVL-----LPDEVQA-- 88

Query: 129 PTLFELFRESFGDNPANGNQNL--HGHNEAIPTISPPKST 166
               +++R+S  DN + GN  +  HG N     I PPK  
Sbjct: 89  ----DIYRDSIRDNLSEGNVLMCSHGFNIHFGQIDPPKGI 124


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.126    0.372 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,735,073
Number of Sequences: 539616
Number of extensions: 3656198
Number of successful extensions: 8637
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 8593
Number of HSP's gapped (non-prelim): 57
length of query: 225
length of database: 191,569,459
effective HSP length: 113
effective length of query: 112
effective length of database: 130,592,851
effective search space: 14626399312
effective search space used: 14626399312
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)