Query 027316
Match_columns 225
No_of_seqs 163 out of 649
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 08:07:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027316.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027316hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00236 mitochondrial import 100.0 3.4E-43 7.4E-48 295.1 12.8 142 4-145 4-145 (164)
2 TIGR00980 3a0801so1tim17 mitoc 100.0 7.4E-42 1.6E-46 288.6 16.3 139 4-142 2-140 (170)
3 KOG1652 Mitochondrial import i 100.0 5.2E-41 1.1E-45 283.7 5.8 144 3-146 1-144 (183)
4 TIGR00983 3a0801s02tim23 mitoc 100.0 3.7E-28 7.9E-33 201.6 11.5 119 7-125 26-148 (149)
5 PF02466 Tim17: Tim17/Tim22/Ti 99.9 2.6E-24 5.6E-29 170.7 11.3 121 10-130 1-125 (128)
6 KOG3324 Mitochondrial import i 99.8 1.6E-20 3.4E-25 161.4 9.3 128 8-135 70-201 (206)
7 KOG3225 Mitochondrial import i 99.8 5.2E-20 1.1E-24 153.7 4.2 111 23-140 50-167 (168)
8 COG5596 TIM22 Mitochondrial im 99.5 1.1E-15 2.4E-20 130.6 -0.9 126 1-127 21-184 (191)
9 KOG4608 Uncharacterized conser 97.9 2E-06 4.3E-11 76.9 -0.6 86 55-140 127-212 (270)
10 COG5596 TIM22 Mitochondrial im 97.8 2.7E-06 6E-11 73.3 -1.3 123 17-139 28-166 (191)
11 PF02466 Tim17: Tim17/Tim22/Ti 94.8 0.41 8.8E-06 37.7 9.9 121 16-136 3-127 (128)
12 KOG4096 Uncharacterized conser 93.0 0.08 1.7E-06 39.6 2.4 70 7-79 3-72 (75)
13 PF10247 Romo1: Reactive mitoc 92.3 0.26 5.7E-06 36.3 4.3 63 16-78 4-67 (67)
14 KOG1398 Uncharacterized conser 84.1 1.3 2.9E-05 42.7 4.2 45 62-106 302-346 (460)
15 KOG1398 Uncharacterized conser 65.8 14 0.00031 35.9 5.7 100 5-105 21-124 (460)
16 TIGR00980 3a0801so1tim17 mitoc 60.6 1.1E+02 0.0024 26.3 10.3 122 17-139 11-133 (170)
17 PF10247 Romo1: Reactive mitoc 59.2 20 0.00042 26.4 4.2 53 10-62 2-55 (67)
18 PF12732 YtxH: YtxH-like prote 50.3 25 0.00054 25.4 3.6 23 23-45 1-23 (74)
19 TIGR00983 3a0801s02tim23 mitoc 45.4 1.6E+02 0.0035 24.6 8.1 73 12-84 26-103 (149)
20 PF10439 Bacteriocin_IIc: Bact 41.5 76 0.0016 22.6 4.9 33 77-109 10-45 (65)
21 PRK09586 murP PTS system N-ace 40.1 3.8E+02 0.0082 26.5 11.1 50 79-129 353-412 (476)
22 KOG1924 RhoA GTPase effector D 34.0 55 0.0012 34.8 4.3 12 72-83 424-435 (1102)
23 COG2979 Uncharacterized protei 33.7 1.1E+02 0.0025 27.4 5.7 54 86-140 31-84 (225)
24 PF13488 Gly-zipper_Omp: Glyci 32.5 1.2E+02 0.0026 20.5 4.5 15 94-108 4-18 (46)
25 PF13436 Gly-zipper_OmpA: Glyc 29.9 1E+02 0.0022 24.5 4.4 39 87-125 50-90 (118)
26 PF09877 DUF2104: Predicted me 28.6 3E+02 0.0065 21.8 6.7 70 23-109 8-79 (99)
27 COG4980 GvpP Gas vesicle prote 27.7 67 0.0014 26.0 3.0 25 21-45 5-29 (115)
28 KOG4096 Uncharacterized conser 27.4 70 0.0015 24.1 2.8 51 15-67 7-57 (75)
29 PF12597 DUF3767: Protein of u 23.4 1.4E+02 0.0031 23.9 4.2 22 21-42 42-63 (118)
30 PF04391 DUF533: Protein of un 22.9 3.6E+02 0.0077 23.4 6.8 45 93-141 10-54 (188)
31 KOG1924 RhoA GTPase effector D 21.7 1.1E+02 0.0024 32.7 3.9 9 35-43 311-319 (1102)
32 COG3558 Uncharacterized protei 21.2 39 0.00085 28.1 0.5 20 76-95 11-30 (154)
33 COG3619 Predicted membrane pro 20.9 6.1E+02 0.013 22.7 8.5 50 70-119 147-207 (226)
34 PRK09824 PTS system beta-gluco 20.3 9.5E+02 0.021 24.7 10.7 60 64-129 334-401 (627)
No 1
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=100.00 E-value=3.4e-43 Score=295.12 Aligned_cols=142 Identities=52% Similarity=0.989 Sum_probs=137.3
Q ss_pred CCCCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhcCCCCCccchHHHHHHhhccchhhHHHHHHHHHHhHHhHHHhh
Q 027316 4 PETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGTRLLGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVYL 83 (225)
Q Consensus 4 ~~~~r~pCp~ri~d~iG~af~mG~v~G~~~g~~~G~~nsP~g~R~~g~~~av~~~gp~~g~sFA~~Gglfs~~ec~l~~~ 83 (225)
-||+|||||+||+||+|++|.||+++|++|||++|+||+|.++|+++.++.+++++++++++||+||++|+++||+++++
T Consensus 4 ~~~~r~pcp~ri~dd~G~af~~G~vgG~~~~~~~G~rnsp~g~rl~g~l~~~~~rap~~g~~FAv~G~~ys~~ec~~~~~ 83 (164)
T PTZ00236 4 RDLSREPCPDRIIEDMGGAFSMGCIGGFIWHFLKGMRNSPKGERFSGGFYLLRKRAPILGGNFAIWGGLFSTFDCTLQYL 83 (164)
T ss_pred hhhCcCCCchHHHHhccHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCChhHHHHHHHHHHhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 027316 84 RQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLALIEGAGIMLNKVLSGPQNMPI 145 (225)
Q Consensus 84 RgKdD~wNsiiAG~aTGail~~r~G~~a~~~sAl~Gga~~al~egag~~l~r~~~~~~~~~~ 145 (225)
|+|||+||+++|||+||++|++|+|++++++++++|++++++||+++++++|++++++.+++
T Consensus 84 R~K~D~~Nsi~AG~~TGa~l~~r~G~~~~~~~a~~Gg~~~~~ie~~~i~~~~~~~~~~~~~~ 145 (164)
T PTZ00236 84 RGKEDHWNAIASGFFTGGVLAIRGGWRSAVRNAIFGGILLGIIELVSIGMNRRQMRTPRQQF 145 (164)
T ss_pred HccCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999998765433
No 2
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=100.00 E-value=7.4e-42 Score=288.61 Aligned_cols=139 Identities=53% Similarity=0.980 Sum_probs=135.7
Q ss_pred CCCCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhcCCCCCccchHHHHHHhhccchhhHHHHHHHHHHhHHhHHHhh
Q 027316 4 PETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGTRLLGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVYL 83 (225)
Q Consensus 4 ~~~~r~pCp~ri~d~iG~af~mG~v~G~~~g~~~G~~nsP~g~R~~g~~~av~~~gp~~g~sFA~~Gglfs~~ec~l~~~ 83 (225)
-||+|||||+|++|++|.+|.||+++|++||+++|++|+|.++|++++++++++++++++++||+|+++|+++||+++++
T Consensus 2 ~~~~r~pcp~r~~d~~G~af~~G~~~G~~~g~~~G~rnsp~g~rl~g~l~av~~rap~~g~~Fav~g~lys~~ec~i~~~ 81 (170)
T TIGR00980 2 EEYTREPCPYRILDDFGGAFAMGTIGGSIFQAFKGFRNSPKGEKLVGAMRAIKTRAPVLGGNFAVWGGLFSTIDCAVVAI 81 (170)
T ss_pred cccccCCCcchhHHhhhHHHHHHHHHHHHHHHHHHhhcCCccchhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred hccCChhHHHHHHHHHHhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 027316 84 RQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLALIEGAGIMLNKVLSGPQN 142 (225)
Q Consensus 84 RgKdD~wNsiiAG~aTGail~~r~G~~a~~~sAl~Gga~~al~egag~~l~r~~~~~~~ 142 (225)
|+|||+||+++|||+||++|++|+|+++++.+++++++++++||+++|+++|+++++++
T Consensus 82 R~KeD~~NsiiAG~~TGa~l~~r~G~~a~~~~aa~gg~~la~ie~~g~~~~~~~~~~~~ 140 (170)
T TIGR00980 82 RKKEDPWNSIISGFLTGAALAVRGGPRAMRGSAILGACILAVIEGVGLVLTRWAAAQMD 140 (170)
T ss_pred hcccchHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999998753
No 3
>KOG1652 consensus Mitochondrial import inner membrane translocase, subunit TIM17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.2e-41 Score=283.71 Aligned_cols=144 Identities=58% Similarity=1.013 Sum_probs=139.1
Q ss_pred CCCCCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhcCCCCCccchHHHHHHhhccchhhHHHHHHHHHHhHHhHHHh
Q 027316 3 TPETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGTRLLGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVY 82 (225)
Q Consensus 3 ~~~~~r~pCp~ri~d~iG~af~mG~v~G~~~g~~~G~~nsP~g~R~~g~~~av~~~gp~~g~sFA~~Gglfs~~ec~l~~ 82 (225)
+.||+|+|||+|+++|+|.+|.||++.|.+|++++|++|+|.|.|+.+.++.++++++..|++||+||++||.+||++++
T Consensus 1 ~~e~sr~pcp~riv~d~g~afamg~igG~~f~~ikG~~nap~G~r~~gg~~av~~~ap~~ggsFAvwgglfSt~dC~Lv~ 80 (183)
T KOG1652|consen 1 MMEYSREPCPIRIVDDCGGAFAMGTIGGSVFQLIKGFRNAPSGARLVGGISAVKMRAPQSGGSFAVWGGLFSTVDCALVA 80 (183)
T ss_pred CCcccCCCCCceeeccccchhhhcccccceeeeeeeeecCCcccccccchhhhhccCcccccceeeeechhhHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCChhHHHHHHHHHHhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 027316 83 LRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLALIEGAGIMLNKVLSGPQNMPIM 146 (225)
Q Consensus 83 ~RgKdD~wNsiiAG~aTGail~~r~G~~a~~~sAl~Gga~~al~egag~~l~r~~~~~~~~~~~ 146 (225)
+|+|||+||+|++||+||++|+.|.|+++++++|++++++++++|+++++++|+.+++.++..+
T Consensus 81 ~R~KeDpwNsivsGa~TGg~La~r~g~~a~~~sa~~~g~~lamieg~g~~~t~~~a~~~~~~~~ 144 (183)
T KOG1652|consen 81 IRKKEDPWNSIVSGAATGGLLAARGGPKAMLTSAITGGLLLAMIEGLGIQVTKIAASQFRNQQP 144 (183)
T ss_pred HhcccchHHHHHHHhhccceeeccccHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcccCC
Confidence 9999999999999999999999999999999999999999999999999999999998654433
No 4
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=99.95 E-value=3.7e-28 Score=201.57 Aligned_cols=119 Identities=22% Similarity=0.278 Sum_probs=111.5
Q ss_pred CCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhcCCC----CCccchHHHHHHhhccchhhHHHHHHHHHHhHHhHHHh
Q 027316 7 SREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPS----GTRLLGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVY 82 (225)
Q Consensus 7 ~r~pCp~ri~d~iG~af~mG~v~G~~~g~~~G~~nsP~----g~R~~g~~~av~~~gp~~g~sFA~~Gglfs~~ec~l~~ 82 (225)
.+..|-|+++..+|.+|+||++.|+++|+++|++++|. ++|+++++|.+++++++++++||+|+++|+++||.+++
T Consensus 26 ~~R~~~e~~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~~~~~~k~rln~~ln~~~~~g~~~G~~~g~~g~lys~~e~~i~~ 105 (149)
T TIGR00983 26 PSRGWFEDLCFGTGTCYLTGLAIGALNGLRLGLKETQSMPWTKLRLNQILNMVTRRGPFWGNTLGILALVYNGINSIIEA 105 (149)
T ss_pred CCCChhhhhhhhHhHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888899999999999999999999999864 46899999999999999999999999999999999999
Q ss_pred hhccCChhHHHHHHHHHHhhhhcccChhHHHHHHHHHHHHHHH
Q 027316 83 LRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLAL 125 (225)
Q Consensus 83 ~RgKdD~wNsiiAG~aTGail~~r~G~~a~~~sAl~Gga~~al 125 (225)
+|+|||+||+++|||+||++|++++|+|+++.++++|++++++
T Consensus 106 ~R~k~D~~Nsv~AGa~TGal~~~~~G~r~~~~g~~~G~~l~~~ 148 (149)
T TIGR00983 106 TRGKHDDFNSVAAGALTGALYKSTRGLRGMARSGALGATAAGV 148 (149)
T ss_pred HhccchhhHhHHHHHHHHHHHHhccChHHHHHHhHHHHHHhhc
Confidence 9999999999999999999999999999999999999988875
No 5
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=99.91 E-value=2.6e-24 Score=170.74 Aligned_cols=121 Identities=40% Similarity=0.677 Sum_probs=111.3
Q ss_pred CCCchhhhhhhhHHHHHHHHHHHHHHHHhh----hcCCCCCccchHHHHHHhhccchhhHHHHHHHHHHhHHhHHHhhhc
Q 027316 10 PCPDRILDDVGGAFGMGAVGGSAFHFLKGI----YNSPSGTRLLGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVYLRQ 85 (225)
Q Consensus 10 pCp~ri~d~iG~af~mG~v~G~~~g~~~G~----~nsP~g~R~~g~~~av~~~gp~~g~sFA~~Gglfs~~ec~l~~~Rg 85 (225)
||++|++++++.++.+|++.|++.+++++. ++.|.++|++..++.+++++++.+.+||.++++|+++||.++++|+
T Consensus 1 ~c~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~ 80 (128)
T PF02466_consen 1 SCPERILDSTGKGFVAGAVFGGFIGAISAFTRPPRGSPLRPRLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRG 80 (128)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 799999999999999999999999999664 3445555788999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhhhhcccChhHHHHHHHHHHHHHHHHHHHH
Q 027316 86 KEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLALIEGAG 130 (225)
Q Consensus 86 KdD~wNsiiAG~aTGail~~r~G~~a~~~sAl~Gga~~al~egag 130 (225)
|||+||+++||++||++++.+.|++.++.++++++++.++++..+
T Consensus 81 k~D~~N~~~aG~~aGa~~~~~~g~~~~~~~~~~~a~~~~~~~~~~ 125 (128)
T PF02466_consen 81 KDDPWNSAIAGAAAGAVLGLRSGPRGMASGAALGAAFAAAVEYYG 125 (128)
T ss_pred ccccchhHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998764
No 6
>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.6e-20 Score=161.38 Aligned_cols=128 Identities=23% Similarity=0.266 Sum_probs=117.2
Q ss_pred CCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhcCC----CCCccchHHHHHHhhccchhhHHHHHHHHHHhHHhHHHhh
Q 027316 8 REPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSP----SGTRLLGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVYL 83 (225)
Q Consensus 8 r~pCp~ri~d~iG~af~mG~v~G~~~g~~~G~~nsP----~g~R~~g~~~av~~~gp~~g~sFA~~Gglfs~~ec~l~~~ 83 (225)
+.-|-|..+..+|.+|..|++.|++.|++.|++|.+ .|.|+++++|.++++++.++++.++++.+|+++|..+++.
T Consensus 70 ~rgw~E~l~f~tG~~yl~G~~iGa~~G~~~Glk~~e~~~~~Klr~nrILN~~t~~G~~~gN~lG~laL~YsaiesgI~~~ 149 (206)
T KOG3324|consen 70 RRGWFENLTFGTGWAYLTGSAIGAFNGLILGLKNTENGASGKLRLNRILNSVTRRGRFWGNTLGSLALMYSAIESGIEAT 149 (206)
T ss_pred ccchhhhhheeccchhccchhhhhHHHHHHhhhcCCCCCccchhHHHHhhhccccccccccchhHHHHHHHHHHHHHHHh
Confidence 445778888899999999999999999999999875 3568999999999999999999999999999999999999
Q ss_pred hccCChhHHHHHHHHHHhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027316 84 RQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLALIEGAGIMLNK 135 (225)
Q Consensus 84 RgKdD~wNsiiAG~aTGail~~r~G~~a~~~sAl~Gga~~al~egag~~l~r 135 (225)
|+|||+||+++||++||++|++.+|+|++++++++++++.+++....-.+.|
T Consensus 150 R~~dd~lnsv~AGalTGalyrs~~Glr~~av~ga~g~~aa~aw~l~k~~~~~ 201 (206)
T KOG3324|consen 150 RGKDDDLNSVAAGALTGALYRSTRGLRAAAVAGAVGGTAAAAWTLGKRIVKR 201 (206)
T ss_pred hccccchhhhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHhhhHHhh
Confidence 9999999999999999999999999999999999999999988766544444
No 7
>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=5.2e-20 Score=153.68 Aligned_cols=111 Identities=28% Similarity=0.376 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHhhhc----CCCCCcc---chHHHHHHhhccchhhHHHHHHHHHHhHHhHHHhhhccCChhHHHHH
Q 027316 23 FGMGAVGGSAFHFLKGIYN----SPSGTRL---LGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFA 95 (225)
Q Consensus 23 f~mG~v~G~~~g~~~G~~n----sP~g~R~---~g~~~av~~~gp~~g~sFA~~Gglfs~~ec~l~~~RgKdD~wNsiiA 95 (225)
.++|...|.++|+|.+..+ .|+-.|+ .+.+..+.++..+.+++|+++|++|+++||++|++|.|+|++|.+++
T Consensus 50 gV~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~~kdMg~r~~s~~knF~~iGlvfsg~Ec~iE~~RAK~D~~Ngaia 129 (168)
T KOG3225|consen 50 GVTGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQVAKDMGQRSGSYAKNFAIIGLVFSGVECLIESFRAKSDWYNGAIA 129 (168)
T ss_pred hccccchhhhHHhhhhhcccCCCCCchhhhhhHHHHHHHHHhhhcchhhhhhhhhhhehhHHHHHHHHHhhhchhcceee
Confidence 3788888999999988876 2422232 23333344566667999999999999999999999999999999999
Q ss_pred HHHHHhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 027316 96 GAATGGFLSMRQGLGASARSAVFGGVLLALIEGAGIMLNKVLSGP 140 (225)
Q Consensus 96 G~aTGail~~r~G~~a~~~sAl~Gga~~al~egag~~l~r~~~~~ 140 (225)
||+||+.++.|+||++ +++||++|++++++ +.|+|++.
T Consensus 130 G~vtGg~l~~raGp~a----~~~G~agfa~fS~~---id~y~~~~ 167 (168)
T KOG3225|consen 130 GCVTGGSLGYRAGPKA----AAIGCAGFAAFSAA---IDKYMRGR 167 (168)
T ss_pred eeeeccchhhcccchh----hhhchhHHHHHHHH---HHHhhhcC
Confidence 9999999999999999 78999999999866 89998763
No 8
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.1e-15 Score=130.56 Aligned_cols=126 Identities=29% Similarity=0.320 Sum_probs=103.2
Q ss_pred CCCCCCCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhcCCCC-----------------------------------
Q 027316 1 MGTPETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSG----------------------------------- 45 (225)
Q Consensus 1 ~~~~~~~r~pCp~ri~d~iG~af~mG~v~G~~~g~~~G~~nsP~g----------------------------------- 45 (225)
|-||| +|+||+..++.+++.+|-++.+.+.+++-++|.++.+..
T Consensus 21 ~lS~~-e~d~~~~~~l~~~~~~~~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwGgl~~~i~~~ 99 (191)
T COG5596 21 ILSPE-ERDPCPLEKLADFMKAFSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWGGLFSTIDCT 99 (191)
T ss_pred ccChh-hcCchhhhHHhhhccchhhcchhhhhhhcccccccccccccchhhcccccccccccCccccccccceeeccccc
Confidence 34778 999999999999999999999999999999999875311
Q ss_pred ---CccchHHHHHHhhccchhhHHHHHHHHHHhHHhHHHhhhccCChhHHHHHHHHHHhhhhcccChhHHHHHHHHHHHH
Q 027316 46 ---TRLLGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVL 122 (225)
Q Consensus 46 ---~R~~g~~~av~~~gp~~g~sFA~~Gglfs~~ec~l~~~RgKdD~wNsiiAG~aTGail~~r~G~~a~~~sAl~Gga~ 122 (225)
.|++..++-+.++++.++++|+++|.+|.+.||+++.+|+|||+.|++.+|+.||+.|+.+.|++++..+...-+++
T Consensus 100 ~~r~q~~~~~~n~~~rg~ftG~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~~~~g~qa~~~~~a~~aa~ 179 (191)
T COG5596 100 PFRLQLKEQLNNAGKRGFFTGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAGPQAMPMGGAGFAAF 179 (191)
T ss_pred hHHHHHhhccccccccccccccccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHHhhccccccccCccchhhh
Confidence 12233334456678889999999999999999999999999999999999999999999999999965544444444
Q ss_pred HHHHH
Q 027316 123 LALIE 127 (225)
Q Consensus 123 ~al~e 127 (225)
.+.++
T Consensus 180 s~~~~ 184 (191)
T COG5596 180 SAGIT 184 (191)
T ss_pred hhhHH
Confidence 44433
No 9
>KOG4608 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=2e-06 Score=76.88 Aligned_cols=86 Identities=23% Similarity=0.292 Sum_probs=74.2
Q ss_pred HHhhccchhhHHHHHHHHHHhHHhHHHhhhccCChhHHHHHHHHHHhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027316 55 VRMNAPRVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLALIEGAGIMLN 134 (225)
Q Consensus 55 v~~~gp~~g~sFA~~Gglfs~~ec~l~~~RgKdD~wNsiiAG~aTGail~~r~G~~a~~~sAl~Gga~~al~egag~~l~ 134 (225)
+.|.+-+.|-..|++...|-++...+..+|+|+|.||-++||.+||+++.+.-|++-++...++|+++-+...+.-..+.
T Consensus 127 farGgf~~G~R~alfttSff~l~t~l~vyRgk~a~~~fvaaga~tgsvF~~~~gL~g~aa~vilG~~lG~tv~~~l~l~q 206 (270)
T KOG4608|consen 127 FARGGFRWGWRTALFTTSFFTLNTSLNVYRGKDALSHFVAAGAVTGSVFRINVGLRGLAAGVILGALLGTTVGGLLMLFQ 206 (270)
T ss_pred HhhccccceeEEeeehhhHHHHHHHHHHHcCchhhhhhhccccceeeeEEeehhhHHHhhcceeehhhcchHHHHHHHHH
Confidence 44556667778899999999999999999999999999999999999999999999888888888888888887777777
Q ss_pred HhhcCC
Q 027316 135 KVLSGP 140 (225)
Q Consensus 135 r~~~~~ 140 (225)
+....+
T Consensus 207 ~a~~k~ 212 (270)
T KOG4608|consen 207 KASGKT 212 (270)
T ss_pred HHhCCc
Confidence 666554
No 10
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=2.7e-06 Score=73.27 Aligned_cols=123 Identities=25% Similarity=0.198 Sum_probs=80.9
Q ss_pred hhhhhHHHHHHHHHHHHH-HHHhhhcCCCCCccchHHHHH-------HhhccchhhHHH-HHHHHHHhHHhHHHhhhccC
Q 027316 17 DDVGGAFGMGAVGGSAFH-FLKGIYNSPSGTRLLGGTQAV-------RMNAPRVGGSFA-VWGGLFSTFDCSMVYLRQKE 87 (225)
Q Consensus 17 d~iG~af~mG~v~G~~~g-~~~G~~nsP~g~R~~g~~~av-------~~~gp~~g~sFA-~~Gglfs~~ec~l~~~RgKd 87 (225)
|.|...-++++--.-.++ +.+....+.+|-|+-.....+ +...+..+.+|+ +||++++.++|+..++|.|+
T Consensus 28 d~~~~~~l~~~~~~~~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwGgl~~~i~~~~~r~q~~~ 107 (191)
T COG5596 28 DPCPLEKLADFMKAFSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWGGLFSTIDCTPFRLQLKE 107 (191)
T ss_pred CchhhhHHhhhccchhhcchhhhhhhcccccccccccccchhhcccccccccccCccccccccceeeccccchHHHHHhh
Confidence 344444444433333332 233334555665554332222 234556689998 99999999999999999999
Q ss_pred ChhHHHHHHHHHHhhhhcccChhHHHHHHHH-------HHHHHHHHHHHHHHHHHhhcC
Q 027316 88 DPWNSIFAGAATGGFLSMRQGLGASARSAVF-------GGVLLALIEGAGIMLNKVLSG 139 (225)
Q Consensus 88 D~wNsiiAG~aTGail~~r~G~~a~~~sAl~-------Gga~~al~egag~~l~r~~~~ 139 (225)
|.||....|++||..++.+..+.+-..+.|. ..-..++.++.|.++.+.-.+
T Consensus 108 ~~~n~~~rg~ftG~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~~~~g~ 166 (191)
T COG5596 108 QLNNAGKRGFFTGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAGP 166 (191)
T ss_pred ccccccccccccccccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHHhhccc
Confidence 9999999999999999998887766666666 223334445556666655443
No 11
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=94.83 E-value=0.41 Score=37.66 Aligned_cols=121 Identities=17% Similarity=0.137 Sum_probs=87.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhcC-CCCCccchH---HHHHHhhccchhhHHHHHHHHHHhHHhHHHhhhccCChhH
Q 027316 16 LDDVGGAFGMGAVGGSAFHFLKGIYNS-PSGTRLLGG---TQAVRMNAPRVGGSFAVWGGLFSTFDCSMVYLRQKEDPWN 91 (225)
Q Consensus 16 ~d~iG~af~mG~v~G~~~g~~~G~~ns-P~g~R~~g~---~~av~~~gp~~g~sFA~~Gglfs~~ec~l~~~RgKdD~wN 91 (225)
.+++-.....|++.|.++|.+.+.+.. +...+.... ++.+-+...+-+..++..-+.|.++-+.++.+=++-=-.|
T Consensus 3 ~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~k~ 82 (128)
T PF02466_consen 3 PERILDSTGKGFVAGAVFGGFIGAISAFTRPPRGSPLRPRLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRGKD 82 (128)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 356667788999999999999998865 322222222 2222222222345588888888888888887766533568
Q ss_pred HHHHHHHHHhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027316 92 SIFAGAATGGFLSMRQGLGASARSAVFGGVLLALIEGAGIMLNKV 136 (225)
Q Consensus 92 siiAG~aTGail~~r~G~~a~~~sAl~Gga~~al~egag~~l~r~ 136 (225)
-.+-.+++|++-+.--+.+.-.+..+.++++++++..+-..++|+
T Consensus 83 D~~N~~~aG~~aGa~~~~~~g~~~~~~~~~~~a~~~~~~~~~~~~ 127 (128)
T PF02466_consen 83 DPWNSAIAGAAAGAVLGLRSGPRGMASGAALGAAFAAAVEYYGRM 127 (128)
T ss_pred ccchhHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999998888888999999999999988775555443
No 12
>KOG4096 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.98 E-value=0.08 Score=39.60 Aligned_cols=70 Identities=20% Similarity=0.362 Sum_probs=45.0
Q ss_pred CCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhcCCCCCccchHHHHHHhhccchhhHHHHHHHHHHhHHhH
Q 027316 7 SREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGTRLLGGTQAVRMNAPRVGGSFAVWGGLFSTFDCS 79 (225)
Q Consensus 7 ~r~pCp~ri~d~iG~af~mG~v~G~~~g~~~G~~nsP~g~R~~g~~~av~~~gp~~g~sFA~~Gglfs~~ec~ 79 (225)
++.+|.+|+..-+-.++.+|...|.+||-++.+|.-|.++ ..++.+.+..-.-+++|+.+=++=+.++|.
T Consensus 3 ~qpSc~dKikmG~~mG~avG~a~G~lfGgf~~lR~g~~g~---~~vr~iGkt~~~SagtFG~FM~igs~Ir~~ 72 (75)
T KOG4096|consen 3 QQPSCFDKIKMGLMMGGAVGGATGALFGGFAALRYGPRGR---GLVRTIGKTMLQSAGTFGLFMGIGSGIRCG 72 (75)
T ss_pred CCccHHHHHHHHHHHHhhhhhhhhhhccchhheeecCChh---HHHHHHhHHHHhccchhhhhhhhhhheecC
Confidence 5677888887766555555666666666666666545443 344455555444478888877777777765
No 13
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=92.31 E-value=0.26 Score=36.26 Aligned_cols=63 Identities=25% Similarity=0.368 Sum_probs=37.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhcCC-CCCccchHHHHHHhhccchhhHHHHHHHHHHhHHh
Q 027316 16 LDDVGGAFGMGAVGGSAFHFLKGIYNSP-SGTRLLGGTQAVRMNAPRVGGSFAVWGGLFSTFDC 78 (225)
Q Consensus 16 ~d~iG~af~mG~v~G~~~g~~~G~~nsP-~g~R~~g~~~av~~~gp~~g~sFA~~Gglfs~~ec 78 (225)
+|.+..++.||...|.+.|++-|.++.- .+.|-+..++.+.+..-..+.+|+.+=++=+.++|
T Consensus 4 ~~kikmG~~MG~~VG~~~G~l~G~~~~~r~g~~~~~~~~~lg~~~l~sg~tFG~Fm~iGs~IRc 67 (67)
T PF10247_consen 4 FDKIKMGFMMGGAVGGAFGALFGTFSAFRYGARGRGLMRTLGKYMLGSGATFGFFMSIGSVIRC 67 (67)
T ss_pred HHHHHHHHHHhhHHHhhhhhhhhhHHHhccCCCCcchHhHHhHHHhcchhHHHHHHhhhccccC
Confidence 4455666777777777777776666543 33344455666666555556777766555444443
No 14
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.09 E-value=1.3 Score=42.71 Aligned_cols=45 Identities=20% Similarity=0.350 Sum_probs=38.5
Q ss_pred hhhHHHHHHHHHHhHHhHHHhhhccCChhHHHHHHHHHHhhhhcc
Q 027316 62 VGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMR 106 (225)
Q Consensus 62 ~g~sFA~~Gglfs~~ec~l~~~RgKdD~wNsiiAG~aTGail~~r 106 (225)
++.-.+.+-++|.++.|++.+++.+||..|+++||.+++--+...
T Consensus 302 lg~FlgsfvfIfkatsC~lr~v~n~dd~l~aifAgglAs~Smmfy 346 (460)
T KOG1398|consen 302 LGSFLGSFVFIFKATSCALRKVANKDDKLVAIFAGGLASLSMMFY 346 (460)
T ss_pred hhHHHHHHHHHHHhHHHHHHHhccCcHHHHHHHHhhhhhheeeec
Confidence 455568888999999999999999999999999999988655543
No 15
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.78 E-value=14 Score=35.87 Aligned_cols=100 Identities=15% Similarity=0.158 Sum_probs=58.5
Q ss_pred CCCCCCCCchhhhhhhhHHHHHHHHH-HHHHHHHhhhcCCCCCcc---chHHHHHHhhccchhhHHHHHHHHHHhHHhHH
Q 027316 5 ETSREPCPDRILDDVGGAFGMGAVGG-SAFHFLKGIYNSPSGTRL---LGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSM 80 (225)
Q Consensus 5 ~~~r~pCp~ri~d~iG~af~mG~v~G-~~~g~~~G~~nsP~g~R~---~g~~~av~~~gp~~g~sFA~~Gglfs~~ec~l 80 (225)
++..-||-...+..+-.++..++..- .++-++-.+.+.. ++|. .-.+..++...-+.+.-+..-.+.|-.+.|.+
T Consensus 21 ~e~~h~w~~~c~ga~~~~ll~~~~~~l~~y~~~ya~~l~~-~~r~~s~~d~~~k~~~~~cqs~lflvtn~~~f~al~C~l 99 (460)
T KOG1398|consen 21 DEADHSWVANCIGALCQSLLLSYGVRLGIYILLYAFKLAR-GQRYSSLLDLDLKVREEACQSGLFLVTNTGSFHALRCCL 99 (460)
T ss_pred hhccCCcccchhHHHHHHHHhhcceehhhHHHHHHHHHHH-hccCchhhHHHHHHHHHHHhhceeeeechHHHHHHHHHH
Confidence 44555666665555544444433211 1222233333332 2221 12233444444444555566678899999999
Q ss_pred HhhhccCChhHHHHHHHHHHhhhhc
Q 027316 81 VYLRQKEDPWNSIFAGAATGGFLSM 105 (225)
Q Consensus 81 ~~~RgKdD~wNsiiAG~aTGail~~ 105 (225)
.++|+|..+||..+++++.+...++
T Consensus 100 Rkwlgkftp~t~glv~s~las~iai 124 (460)
T KOG1398|consen 100 RKWLGKFTPLTSGLVGSVLASSIAI 124 (460)
T ss_pred HHHhcccCcccHHHHHHHHhhhhhh
Confidence 9999999999999999988855543
No 16
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=60.58 E-value=1.1e+02 Score=26.28 Aligned_cols=122 Identities=11% Similarity=-0.040 Sum_probs=75.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhcCCCCC-ccchHHHHHHhhccchhhHHHHHHHHHHhHHhHHHhhhccCChhHHHHH
Q 027316 17 DDVGGAFGMGAVGGSAFHFLKGIYNSPSGT-RLLGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFA 95 (225)
Q Consensus 17 d~iG~af~mG~v~G~~~g~~~G~~nsP~g~-R~~g~~~av~~~gp~~g~sFA~~Gglfs~~ec~l~~~RgKdD~wNsiiA 95 (225)
+-+-..+..++.+|.++|.+.++....+.. +-......++....+ +..++.--+++..+-+.++..=.+----|-.+-
T Consensus 11 ~r~~d~~G~af~~G~~~G~~~g~~~G~rnsp~g~rl~g~l~av~~r-ap~~g~~Fav~g~lys~~ec~i~~~R~KeD~~N 89 (170)
T TIGR00980 11 YRILDDFGGAFAMGTIGGSIFQAFKGFRNSPKGEKLVGAMRAIKTR-APVLGGNFAVWGGLFSTIDCAVVAIRKKEDPWN 89 (170)
T ss_pred chhHHhhhHHHHHHHHHHHHHHHHHHhhcCCccchhhHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Confidence 445677889999999999999888644322 111211122222222 444555556666666666665555445677777
Q ss_pred HHHHHhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 027316 96 GAATGGFLSMRQGLGASARSAVFGGVLLALIEGAGIMLNKVLSG 139 (225)
Q Consensus 96 G~aTGail~~r~G~~a~~~sAl~Gga~~al~egag~~l~r~~~~ 139 (225)
..++|++-+.--+.+.-.+.++.++++.+++-.+---+.-.+..
T Consensus 90 siiAG~~TGa~l~~r~G~~a~~~~aa~gg~~la~ie~~g~~~~~ 133 (170)
T TIGR00980 90 SIISGFLTGAALAVRGGPRAMRGSAILGACILAVIEGVGLVLTR 133 (170)
T ss_pred HHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778777777676666677777888888877663333334433
No 17
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=59.24 E-value=20 Score=26.45 Aligned_cols=53 Identities=13% Similarity=0.083 Sum_probs=37.4
Q ss_pred CCCchhhhhhhhHHHHHHHHHHHHHHHHhhhcCCCCC-ccchHHHHHHhhccch
Q 027316 10 PCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGT-RLLGGTQAVRMNAPRV 62 (225)
Q Consensus 10 pCp~ri~d~iG~af~mG~v~G~~~g~~~G~~nsP~g~-R~~g~~~av~~~gp~~ 62 (225)
.|.+|+..-.-.+..+|...|.++|.+..++.=+.++ -+...=+.+-..+...
T Consensus 2 sc~~kikmG~~MG~~VG~~~G~l~G~~~~~r~g~~~~~~~~~lg~~~l~sg~tF 55 (67)
T PF10247_consen 2 SCFDKIKMGFMMGGAVGGAFGALFGTFSAFRYGARGRGLMRTLGKYMLGSGATF 55 (67)
T ss_pred cHHHHHHHHHHHhhHHHhhhhhhhhhHHHhccCCCCcchHhHHhHHHhcchhHH
Confidence 5888998888888899999999999999998644332 2333334444555554
No 18
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=50.34 E-value=25 Score=25.40 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCC
Q 027316 23 FGMGAVGGSAFHFLKGIYNSPSG 45 (225)
Q Consensus 23 f~mG~v~G~~~g~~~G~~nsP~g 45 (225)
|..|++.|++.|...|+.-+|+.
T Consensus 1 F~~g~l~Ga~~Ga~~glL~aP~s 23 (74)
T PF12732_consen 1 FLLGFLAGAAAGAAAGLLFAPKS 23 (74)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCC
Confidence 56788888888888888888854
No 19
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=45.44 E-value=1.6e+02 Score=24.57 Aligned_cols=73 Identities=15% Similarity=0.071 Sum_probs=41.6
Q ss_pred Cchhhhh-hhhHHHHHHHHHHHHHHHHhhhcCCCCCccch----HHHHHHhhccchhhHHHHHHHHHHhHHhHHHhhh
Q 027316 12 PDRILDD-VGGAFGMGAVGGSAFHFLKGIYNSPSGTRLLG----GTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVYLR 84 (225)
Q Consensus 12 p~ri~d~-iG~af~mG~v~G~~~g~~~G~~nsP~g~R~~g----~~~av~~~gp~~g~sFA~~Gglfs~~ec~l~~~R 84 (225)
|.|.+.+ +-....+..++|.+.|.+.|+++.-+..+... -++.+-+...+-+-.++---++...+-+.++..=
T Consensus 26 ~~R~~~e~~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~~~~~~k~rln~~ln~~~~~g~~~G~~~g~~g~lys~~e~~i 103 (149)
T TIGR00983 26 PSRGWFEDLCFGTGTCYLTGLAIGALNGLRLGLKETQSMPWTKLRLNQILNMVTRRGPFWGNTLGILALVYNGINSII 103 (149)
T ss_pred CCCChhhhhhhhHhHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5566655 44556788899999999999987544332211 1222222223334555555555566666655443
No 20
>PF10439 Bacteriocin_IIc: Bacteriocin class II with double-glycine leader peptide; InterPro: IPR019493 Bacteriocins are proteinaceous toxins produced by bacteria to inhibit the growth of similar or closely related strains. The producer bacteria are protected from the effects of their own bacteriocins by production of a specific immunity protein which is co-transcribed with the genes encoding the bacteriocins, e.g. IPR015046 from INTERPRO. The bacteriocins are structurally more specific than their immunity-protein counterparts. Typically, production of the bacteriocin gene is from within an operon carrying up to 6 genes including a typical two-component regulatory system (R and H), a small peptide pheromone (C), and a dedicated ABC transporter (A and -B) as well as an immunity protein []. The ABC transporter is thought to recognise the N termini of both the pheromone and the bacteriocins and to transport these peptides across the cytoplasmic membrane, concurrent with cleavage at the conserved double-glycine motif. Cleaved extracellular C can then bind to the sensor kinase, H, resulting in activation of R and up-regulation of the entire gene cluster via binding to consensus sequences within each promoter []. It seems likely that the whole regulon is carried on a transmissible plasmid which is passed between closely related Firmicute species since many clinical isolates from different Firmicutes can produce at least two bacteriocins, and the same bacteriocins can be produced by different species. The proteins in this entry include amylovorin-L, lactacin-F and salivaricin CRL 1328, all of them class IIb two-peptide bacteriocins.
Probab=41.48 E-value=76 Score=22.59 Aligned_cols=33 Identities=15% Similarity=0.124 Sum_probs=22.4
Q ss_pred HhHHHhhhcc---CChhHHHHHHHHHHhhhhcccCh
Q 027316 77 DCSMVYLRQK---EDPWNSIFAGAATGGFLSMRQGL 109 (225)
Q Consensus 77 ec~l~~~RgK---dD~wNsiiAG~aTGail~~r~G~ 109 (225)
+.-|+++-+= .+.|..+++++++|++.+...|+
T Consensus 10 ~eeL~~I~GG~~~~~~~~~~~~~~~~G~~~G~~~g~ 45 (65)
T PF10439_consen 10 EEELSSIEGGNSWGNCVGGVGGGAAGGAAAGAAGGP 45 (65)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHHHHHhhhccc
Confidence 3444455443 45677778888888888888775
No 21
>PRK09586 murP PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Probab=40.11 E-value=3.8e+02 Score=26.47 Aligned_cols=50 Identities=16% Similarity=0.220 Sum_probs=25.5
Q ss_pred HHHhhhccCCh--hHHHHHHHHHHhhhhcc--------cChhHHHHHHHHHHHHHHHHHHH
Q 027316 79 SMVYLRQKEDP--WNSIFAGAATGGFLSMR--------QGLGASARSAVFGGVLLALIEGA 129 (225)
Q Consensus 79 ~l~~~RgKdD~--wNsiiAG~aTGail~~r--------~G~~a~~~sAl~Gga~~al~ega 129 (225)
....+|.|+|. -+..++++.++ +++.+ -..+....++++|+++.+++.+.
T Consensus 353 lav~lk~K~~~~~K~~a~sa~isa-~lGITEPaiYGV~L~~kkpfi~a~iGg~iGG~~~g~ 412 (476)
T PRK09586 353 LALYWRAQKHSALRTQVKGAIIPG-LLGVGEPLIYGVTLPRMKPFVTACLGGAAGGFFIGL 412 (476)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH-HhcCCccchheeehhhhHHHHHHHHHHHHHHHHHHH
Confidence 33456665433 23333444443 33544 33445566677777777776543
No 22
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=34.00 E-value=55 Score=34.83 Aligned_cols=12 Identities=0% Similarity=0.204 Sum_probs=5.8
Q ss_pred HHHhHHhHHHhh
Q 027316 72 LFSTFDCSMVYL 83 (225)
Q Consensus 72 lfs~~ec~l~~~ 83 (225)
.|..+|-+++.|
T Consensus 424 YykLIEecISqI 435 (1102)
T KOG1924|consen 424 YYKLIEECISQI 435 (1102)
T ss_pred HHHHHHHHHHHH
Confidence 455555444443
No 23
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.66 E-value=1.1e+02 Score=27.41 Aligned_cols=54 Identities=20% Similarity=0.028 Sum_probs=34.0
Q ss_pred cCChhHHHHHHHHHHhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 027316 86 KEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLALIEGAGIMLNKVLSGP 140 (225)
Q Consensus 86 KdD~wNsiiAG~aTGail~~r~G~~a~~~sAl~Gga~~al~egag~~l~r~~~~~ 140 (225)
..+..|.+-+|++++.+|+-.++.+- ...+...|.+.++-.-+.-..+.+...+
T Consensus 31 ~~~~l~p~~~GALaa~Llg~K~~rk~-~~k~~k~GglAAlG~laY~aY~N~q~~q 84 (225)
T COG2979 31 LGSLLNPLGGGALAAMLLGNKSARKL-GGKATKLGGLAALGALAYKAYQNYQKGQ 84 (225)
T ss_pred cccccCcchhHHHHHHHHcCcchHHH-HhhHhhhhhHHHHHHHHHHHHHHHhccC
Confidence 47788999999999999998886543 2233444444444444444555554443
No 24
>PF13488 Gly-zipper_Omp: Glycine zipper
Probab=32.47 E-value=1.2e+02 Score=20.47 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=8.9
Q ss_pred HHHHHHHhhhhcccC
Q 027316 94 FAGAATGGFLSMRQG 108 (225)
Q Consensus 94 iAG~aTGail~~r~G 108 (225)
.-|++.|++++...+
T Consensus 4 ~iGA~~Ga~iG~~~g 18 (46)
T PF13488_consen 4 AIGAAAGAAIGAATG 18 (46)
T ss_pred HHHHHHHHHHHHHhC
Confidence 346666776666544
No 25
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=29.86 E-value=1e+02 Score=24.51 Aligned_cols=39 Identities=26% Similarity=0.202 Sum_probs=21.3
Q ss_pred CChhHHHHHHHHHHhhhhcccCh--hHHHHHHHHHHHHHHH
Q 027316 87 EDPWNSIFAGAATGGFLSMRQGL--GASARSAVFGGVLLAL 125 (225)
Q Consensus 87 dD~wNsiiAG~aTGail~~r~G~--~a~~~sAl~Gga~~al 125 (225)
++.....+.|++.|++++.-.|- +.++.++++|+++-++
T Consensus 50 ~~~~~ga~~GA~~GA~~Ga~~G~~~~ga~~GAa~Ga~~G~~ 90 (118)
T PF13436_consen 50 ENTAGGAAIGAAAGAAIGAIIGGNGRGAAIGAAAGAAVGAA 90 (118)
T ss_pred hhHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHH
Confidence 44445556666777777765443 4444455555554333
No 26
>PF09877 DUF2104: Predicted membrane protein (DUF2104); InterPro: IPR019211 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=28.55 E-value=3e+02 Score=21.83 Aligned_cols=70 Identities=20% Similarity=0.218 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHhhhc--CCCCCccchHHHHHHhhccchhhHHHHHHHHHHhHHhHHHhhhccCChhHHHHHHHHHH
Q 027316 23 FGMGAVGGSAFHFLKGIYN--SPSGTRLLGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATG 100 (225)
Q Consensus 23 f~mG~v~G~~~g~~~G~~n--sP~g~R~~g~~~av~~~gp~~g~sFA~~Gglfs~~ec~l~~~RgKdD~wNsiiAG~aTG 100 (225)
+...++.|++.|+.-+.+. .|- +.++--.++...+++|+++-.+++- .-..|-.++-++.|
T Consensus 8 ~~i~fiiGs~~GL~ySYkKy~~P~----------v~k~iD~~ALv~aiiG~~~~~vn~~-------~~~~~~~ig~~li~ 70 (99)
T PF09877_consen 8 YIILFIIGSFLGLEYSYKKYREPF----------VEKKIDKLALVLAIIGGLILAVNSP-------SSPILYTIGAFLIG 70 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHhccch----------hhhcccHHHHHHHHHHHHHHHhcCc-------chhHHHHHHHHHHh
Confidence 3556777888888777753 331 3334445577889999998887776 55678889999999
Q ss_pred hhhhcccCh
Q 027316 101 GFLSMRQGL 109 (225)
Q Consensus 101 ail~~r~G~ 109 (225)
-.+++|-|.
T Consensus 71 ~~~GmRPGY 79 (99)
T PF09877_consen 71 FPLGMRPGY 79 (99)
T ss_pred hhccCCCCC
Confidence 999999874
No 27
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=27.72 E-value=67 Score=26.03 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCCC
Q 027316 21 GAFGMGAVGGSAFHFLKGIYNSPSG 45 (225)
Q Consensus 21 ~af~mG~v~G~~~g~~~G~~nsP~g 45 (225)
..|..|++.|++.|+..++.-+|+.
T Consensus 5 ~~~l~G~liGgiiGa~aaLL~AP~s 29 (115)
T COG4980 5 KDFLFGILIGGIIGAAAALLFAPKS 29 (115)
T ss_pred chHHHHHHHHHHHHHHHHHHhCCcc
Confidence 4578999999999999999999954
No 28
>KOG4096 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.44 E-value=70 Score=24.09 Aligned_cols=51 Identities=22% Similarity=0.115 Sum_probs=30.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhcCCCCCccchHHHHHHhhccchhhHHH
Q 027316 15 ILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGTRLLGGTQAVRMNAPRVGGSFA 67 (225)
Q Consensus 15 i~d~iG~af~mG~v~G~~~g~~~G~~nsP~g~R~~g~~~av~~~gp~~g~sFA 67 (225)
.+|.+-.+++||...|.+-|++.|-+...+ --...+..++.-+..+..+-+
T Consensus 7 c~dKikmG~~mG~avG~a~G~lfGgf~~lR--~g~~g~~~vr~iGkt~~~Sag 57 (75)
T KOG4096|consen 7 CFDKIKMGLMMGGAVGGATGALFGGFAALR--YGPRGRGLVRTIGKTMLQSAG 57 (75)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhccchhhee--ecCChhHHHHHHhHHHHhccc
Confidence 466677777777777777777666665431 124666677766555433333
No 29
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=23.44 E-value=1.4e+02 Score=23.91 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhcC
Q 027316 21 GAFGMGAVGGSAFHFLKGIYNS 42 (225)
Q Consensus 21 ~af~mG~v~G~~~g~~~G~~ns 42 (225)
.+++.|+.+|.+.|++.-+..+
T Consensus 42 ~slL~Gi~~G~~vG~~~fl~~~ 63 (118)
T PF12597_consen 42 DSLLYGIAGGFGVGGLRFLFTS 63 (118)
T ss_pred HHHHHHHHHHHHHHhhhhcccC
Confidence 4567788888888888877654
No 30
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=22.89 E-value=3.6e+02 Score=23.40 Aligned_cols=45 Identities=24% Similarity=0.181 Sum_probs=21.7
Q ss_pred HHHHHHHHhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 027316 93 IFAGAATGGFLSMRQGLGASARSAVFGGVLLALIEGAGIMLNKVLSGPQ 141 (225)
Q Consensus 93 iiAG~aTGail~~r~G~~a~~~sAl~Gga~~al~egag~~l~r~~~~~~ 141 (225)
.++|.+.|.+++.+++. .+..+++..|.+.++-. +..+.+..|++
T Consensus 10 ~l~ggl~g~LlG~k~~r-~~~g~a~~~Gg~AalG~---lA~~ayq~~q~ 54 (188)
T PF04391_consen 10 ALAGGLLGMLLGGKKGR-KMGGGALKYGGLAALGG---LAYKAYQNWQQ 54 (188)
T ss_pred hHHHHHHHHHhCCCCCC-ccchHHHHHHHHHHHHH---HHHHHHHHHhc
Confidence 34466667777766543 23344444444433322 33444445544
No 31
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=21.70 E-value=1.1e+02 Score=32.75 Aligned_cols=9 Identities=33% Similarity=0.855 Sum_probs=3.7
Q ss_pred HHHhhhcCC
Q 027316 35 FLKGIYNSP 43 (225)
Q Consensus 35 ~~~G~~nsP 43 (225)
|+-++-++|
T Consensus 311 ~INal~t~p 319 (1102)
T KOG1924|consen 311 FINALVTSP 319 (1102)
T ss_pred HHHHhcCCH
Confidence 444444433
No 32
>COG3558 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.20 E-value=39 Score=28.09 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=16.9
Q ss_pred HHhHHHhhhccCChhHHHHH
Q 027316 76 FDCSMVYLRQKEDPWNSIFA 95 (225)
Q Consensus 76 ~ec~l~~~RgKdD~wNsiiA 95 (225)
.|.+++++|-.+|.||+-=.
T Consensus 11 ~eta~~kvr~aed~wnsrdp 30 (154)
T COG3558 11 AETAIQKVRMAEDAWNSRDP 30 (154)
T ss_pred HHHHHHHHHHhHhccccCCh
Confidence 47899999999999998543
No 33
>COG3619 Predicted membrane protein [Function unknown]
Probab=20.86 E-value=6.1e+02 Score=22.66 Aligned_cols=50 Identities=30% Similarity=0.228 Sum_probs=29.2
Q ss_pred HHHHHhHHhHHHhhhccCCh-----------hHHHHHHHHHHhhhhcccChhHHHHHHHHH
Q 027316 70 GGLFSTFDCSMVYLRQKEDP-----------WNSIFAGAATGGFLSMRQGLGASARSAVFG 119 (225)
Q Consensus 70 Gglfs~~ec~l~~~RgKdD~-----------wNsiiAG~aTGail~~r~G~~a~~~sAl~G 119 (225)
|-+-++......+++.||+. |-+.+.|++.|+++...-|-.++...++.-
T Consensus 147 Gnl~~~~~~l~~~l~~k~~~~~~~~~~~~~~il~f~~GAi~g~ll~~~~g~~al~~~~~~i 207 (226)
T COG3619 147 GNLKSAGRGLGRYLSGKDKEKLRDWLIYLSLILSFIVGAICGALLTLFFGLKALWVVAALI 207 (226)
T ss_pred hhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34445555556666665443 445567777777777777766654444433
No 34
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=20.32 E-value=9.5e+02 Score=24.68 Aligned_cols=60 Identities=18% Similarity=0.209 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHhHHhHHHhhhccCChhHHHHHHHHHHhhhhcc--------cChhHHHHHHHHHHHHHHHHHHH
Q 027316 64 GSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMR--------QGLGASARSAVFGGVLLALIEGA 129 (225)
Q Consensus 64 ~sFA~~Gglfs~~ec~l~~~RgKdD~wNsiiAG~aTGail~~r--------~G~~a~~~sAl~Gga~~al~ega 129 (225)
.++|..|+.+.. .+|.||.-.-++..++.-.++++.+ -..+....++++|+++.+++-+.
T Consensus 334 a~~aq~Ga~lav------~lktKnk~~K~~a~sa~isallGITEPaiYGV~L~~kkpfi~~~iggaiGG~~~g~ 401 (627)
T PRK09824 334 AVMAQVGAALGV------FLCTRDAQKKVVAGSAFLAGLFGITEPAVYGVNLPLKRPFIFGCISGALGAAIIGY 401 (627)
T ss_pred HHHHHHHHHHHH------HHHHhCHHHHHHHHHHHHHHhcCCCcceeeeeecchhHHHHHHHHHHHHHHHHHHH
Confidence 445555554443 3454444443444333333455554 23455666677777777766543
Done!