Query 027316
Match_columns 225
No_of_seqs 163 out of 649
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 13:15:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027316.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027316hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k4f_A T-cell surface glycopro 26.4 20 0.00069 24.4 0.8 10 216-225 30-39 (57)
2 2lbg_A Major prion protein; co 23.9 82 0.0028 18.5 3.0 19 21-39 5-23 (27)
3 2lck_A Mitochondrial uncouplin 20.8 1.5E+02 0.0051 24.9 5.5 33 69-101 178-214 (303)
4 2fft_A Thylakoid soluble phosp 20.5 67 0.0023 23.6 2.7 10 185-195 74-83 (84)
5 2imj_A Hypothetical protein DU 17.2 25 0.00087 28.9 -0.2 18 76-93 16-33 (166)
6 1pk8_A RAT synapsin I; ATP bin 15.8 32 0.0011 32.1 0.0 18 182-199 72-89 (422)
7 2lck_A Mitochondrial uncouplin 15.4 1.5E+02 0.005 24.9 4.1 34 70-103 82-118 (303)
8 1bts_A BAND 3 anion transport 13.6 95 0.0032 17.9 1.7 16 112-127 6-21 (26)
9 2b2h_A AMT-1, ammonium transpo 10.7 7.6E+02 0.026 22.5 7.7 54 79-136 236-292 (399)
10 2elu_A Zinc finger protein 406 10.0 78 0.0027 19.6 0.5 18 73-90 19-36 (37)
No 1
>2k4f_A T-cell surface glycoprotein CD3 epsilon chain; ITAM, TCR, membrane bound protein, bicelle, immunoglobulin domain, membrane, phosphoprotein; NMR {Mus musculus}
Probab=26.36 E-value=20 Score=24.43 Aligned_cols=10 Identities=50% Similarity=1.175 Sum_probs=8.7
Q ss_pred CCCCCCCCCC
Q 027316 216 APPVPSFEYK 225 (225)
Q Consensus 216 ~~~~~~~~~~ 225 (225)
+|||||=||.
T Consensus 30 pPPVPNPDYE 39 (57)
T 2k4f_A 30 PPPVPNPDYE 39 (57)
T ss_dssp CCCCCSGGGC
T ss_pred CCCCCCCCcc
Confidence 7999999983
No 2
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=23.91 E-value=82 Score=18.49 Aligned_cols=19 Identities=37% Similarity=0.447 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q 027316 21 GAFGMGAVGGSAFHFLKGI 39 (225)
Q Consensus 21 ~af~mG~v~G~~~g~~~G~ 39 (225)
+++..|++.|++.+.+.|.
T Consensus 5 ga~AAGaVvGglGgy~lg~ 23 (27)
T 2lbg_A 5 GAAAAGAVVGGLGGYMLGS 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhHHHHHHH
Confidence 5567888888888887765
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=20.81 E-value=1.5e+02 Score=24.86 Aligned_cols=33 Identities=15% Similarity=-0.018 Sum_probs=18.9
Q ss_pred HHHHHHhHHhHHHhhhc----cCChhHHHHHHHHHHh
Q 027316 69 WGGLFSTFDCSMVYLRQ----KEDPWNSIFAGAATGG 101 (225)
Q Consensus 69 ~Gglfs~~ec~l~~~Rg----KdD~wNsiiAG~aTGa 101 (225)
.+..|...|..-+.+.. +++.+..+++|+++|.
T Consensus 178 ~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~ 214 (303)
T 2lck_A 178 NCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGF 214 (303)
T ss_dssp HHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHH
Confidence 34455666655555543 2345667777777664
No 4
>2fft_A Thylakoid soluble phosphoprotein; TSP9, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Spinacia oleracea} SCOP: g.88.1.1
Probab=20.46 E-value=67 Score=23.63 Aligned_cols=10 Identities=40% Similarity=0.807 Sum_probs=7.6
Q ss_pred CCccccccCCC
Q 027316 185 SSWFGGWFGGG 195 (225)
Q Consensus 185 ~~~~~~~f~~~ 195 (225)
+| |||||.+|
T Consensus 74 GG-fGGLFaKK 83 (84)
T 2fft_A 74 GV-FGGLFAKK 83 (84)
T ss_dssp CS-SSSSSCCC
T ss_pred Cc-ccceeccC
Confidence 44 89999854
No 5
>2imj_A Hypothetical protein DUF1348; alpha beta protein, structural genomics, PSI-2, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} SCOP: d.17.4.23
Probab=17.24 E-value=25 Score=28.86 Aligned_cols=18 Identities=33% Similarity=0.541 Sum_probs=15.7
Q ss_pred HHhHHHhhhccCChhHHH
Q 027316 76 FDCSMVYLRQKEDPWNSI 93 (225)
Q Consensus 76 ~ec~l~~~RgKdD~wNsi 93 (225)
.|.+++++|--+|.||+=
T Consensus 16 ~EtA~~KVr~AEDaWNsr 33 (166)
T 2imj_A 16 RESAIEKIRLAEDGWNSR 33 (166)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhhccc
Confidence 578899999999999974
No 6
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=15.81 E-value=32 Score=32.09 Aligned_cols=18 Identities=6% Similarity=0.193 Sum_probs=0.0
Q ss_pred CCCCCccccccCCCcccC
Q 027316 182 DSDSSWFGGWFGGGQKKE 199 (225)
Q Consensus 182 ~~~~~~~~~~f~~~~~~~ 199 (225)
++++|||.++=.--|+..
T Consensus 72 ~~~~~~~~s~~~~~~~~~ 89 (422)
T 1pk8_A 72 SGGGGFFSSLSNAVKQTT 89 (422)
T ss_dssp ------------------
T ss_pred CCCcchhhHHHHHHHHHH
Confidence 344779988866545554
No 7
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=15.38 E-value=1.5e+02 Score=24.89 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=20.8
Q ss_pred HHHHHhHHhHHHhhhcc---CChhHHHHHHHHHHhhh
Q 027316 70 GGLFSTFDCSMVYLRQK---EDPWNSIFAGAATGGFL 103 (225)
Q Consensus 70 Gglfs~~ec~l~~~RgK---dD~wNsiiAG~aTGail 103 (225)
+..|...|..-+.+... .+.+..+++|+++|++-
T Consensus 82 ~i~f~~ye~~k~~~~~~~~~~~~~~~~~ag~~ag~~~ 118 (303)
T 2lck_A 82 SVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALA 118 (303)
T ss_dssp HHTTTHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHH
Confidence 33444555554444433 45677888999888763
No 8
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=13.61 E-value=95 Score=17.87 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 027316 112 SARSAVFGGVLLALIE 127 (225)
Q Consensus 112 ~~~sAl~Gga~~al~e 127 (225)
++.++.++|++++++.
T Consensus 6 ~i~s~ai~Gi~f~lf~ 21 (26)
T 1bts_A 6 LLISTAVQGILFALLG 21 (26)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444555555555543
No 9
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=10.73 E-value=7.6e+02 Score=22.48 Aligned_cols=54 Identities=11% Similarity=0.065 Sum_probs=25.5
Q ss_pred HHHhhhccCCh---hHHHHHHHHHHhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027316 79 SMVYLRQKEDP---WNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLALIEGAGIMLNKV 136 (225)
Q Consensus 79 ~l~~~RgKdD~---wNsiiAG~aTGail~~r~G~~a~~~sAl~Gga~~al~egag~~l~r~ 136 (225)
.++++|+|-|. .|.++||.++=.--..--.|-. |++-|++.+++...+..+.+.
T Consensus 236 ~~~~~~gk~~~~~~~nG~lAGLVaITa~~~~v~p~~----A~iiG~iag~i~~~~~~l~~k 292 (399)
T 2b2h_A 236 VIGWIKGKPGSLGIVSGAIAGLAAITPAAGFVDVKG----AIVIGLVAGIVCYLAMDFRIK 292 (399)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHTTTTTTCCHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHhhhhhccccccCCHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 34556666665 3555555543111111122333 455555556665555545444
No 10
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=10.00 E-value=78 Score=19.57 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=14.5
Q ss_pred HHhHHhHHHhhhccCChh
Q 027316 73 FSTFDCSMVYLRQKEDPW 90 (225)
Q Consensus 73 fs~~ec~l~~~RgKdD~w 90 (225)
||-+...+.++|..+|+.
T Consensus 19 ysdvknlikhire~hd~~ 36 (37)
T 2elu_A 19 YSDVKNLIKHIRDAHDPQ 36 (37)
T ss_dssp CSSHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 666788899999988863
Done!