Query 027317
Match_columns 225
No_of_seqs 226 out of 1084
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 08:08:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027317.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027317hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02299 1-aminocyclopropane-1 100.0 1.4E-65 3.1E-70 434.0 23.9 225 1-225 4-228 (321)
2 COG3491 PcbC Isopenicillin N s 100.0 1.6E-62 3.4E-67 398.9 22.3 220 1-225 3-244 (322)
3 PLN02216 protein SRG1 100.0 4E-62 8.7E-67 418.4 24.6 221 3-225 52-280 (357)
4 PLN02997 flavonol synthase 100.0 2.9E-61 6.3E-66 408.1 24.8 217 3-225 32-252 (325)
5 PLN02912 oxidoreductase, 2OG-F 100.0 2.4E-61 5.3E-66 412.3 24.4 220 2-225 40-266 (348)
6 PLN02403 aminocyclopropanecarb 100.0 2.9E-61 6.3E-66 404.2 23.8 222 3-225 2-224 (303)
7 PLN02750 oxidoreductase, 2OG-F 100.0 6.7E-61 1.5E-65 409.8 25.5 219 3-225 26-264 (345)
8 PLN03178 leucoanthocyanidin di 100.0 3.5E-61 7.6E-66 413.5 23.5 222 3-225 47-280 (360)
9 PLN02254 gibberellin 3-beta-di 100.0 6.5E-61 1.4E-65 410.5 24.3 216 3-225 56-280 (358)
10 PLN02276 gibberellin 20-oxidas 100.0 5.6E-61 1.2E-65 412.1 24.0 219 3-225 40-275 (361)
11 PLN02393 leucoanthocyanidin di 100.0 7.4E-61 1.6E-65 411.5 24.6 224 2-225 50-283 (362)
12 PLN02485 oxidoreductase 100.0 7E-61 1.5E-65 407.9 24.0 222 2-225 6-259 (329)
13 PLN00417 oxidoreductase, 2OG-F 100.0 1.2E-60 2.5E-65 408.1 24.8 221 3-225 44-273 (348)
14 PLN02758 oxidoreductase, 2OG-F 100.0 8.7E-61 1.9E-65 410.7 23.7 220 3-225 52-282 (361)
15 PTZ00273 oxidase reductase; Pr 100.0 2.6E-60 5.6E-65 403.2 23.1 220 2-225 4-248 (320)
16 PLN02639 oxidoreductase, 2OG-F 100.0 4.6E-60 9.9E-65 403.5 24.5 217 3-225 37-260 (337)
17 PLN03002 oxidoreductase, 2OG-F 100.0 3.6E-60 7.9E-65 403.2 23.7 219 2-225 13-257 (332)
18 PLN02515 naringenin,2-oxogluta 100.0 4.5E-60 9.8E-65 405.3 23.8 219 3-225 37-266 (358)
19 PLN02947 oxidoreductase 100.0 4.1E-60 8.9E-65 407.4 23.5 219 3-225 66-294 (374)
20 KOG0143 Iron/ascorbate family 100.0 2.9E-59 6.4E-64 394.5 24.7 221 3-225 17-247 (322)
21 PLN02704 flavonol synthase 100.0 5.6E-59 1.2E-63 396.6 22.7 219 2-225 41-268 (335)
22 PLN02904 oxidoreductase 100.0 1.1E-58 2.5E-63 396.8 24.1 218 3-225 51-277 (357)
23 PLN02156 gibberellin 2-beta-di 100.0 3.1E-58 6.7E-63 390.5 23.8 215 3-225 26-250 (335)
24 PLN02984 oxidoreductase, 2OG-F 100.0 2.6E-58 5.6E-63 391.8 22.4 212 3-225 38-269 (341)
25 PLN02365 2-oxoglutarate-depend 100.0 6.2E-57 1.3E-61 378.7 22.2 209 2-225 4-221 (300)
26 PLN03001 oxidoreductase, 2OG-F 100.0 4.2E-46 9.2E-51 306.6 17.0 172 50-225 2-185 (262)
27 PF14226 DIOX_N: non-haem diox 99.9 4.9E-26 1.1E-30 165.9 6.8 101 4-105 1-115 (116)
28 PLN03176 flavanone-3-hydroxyla 99.8 5.5E-20 1.2E-24 134.2 9.5 68 3-70 37-106 (120)
29 PF03171 2OG-FeII_Oxy: 2OG-Fe( 99.7 3.5E-17 7.6E-22 115.6 5.9 67 155-225 2-70 (98)
30 smart00702 P4Hc Prolyl 4-hydro 91.1 1.3 2.7E-05 34.2 7.3 80 124-217 60-152 (178)
31 PF13640 2OG-FeII_Oxy_3: 2OG-F 85.6 0.54 1.2E-05 32.4 1.7 56 157-218 1-76 (100)
32 PF07350 DUF1479: Protein of u 81.4 1.6 3.6E-05 38.4 3.4 53 2-58 48-100 (416)
33 PLN00052 prolyl 4-hydroxylase; 78.1 11 0.00024 32.1 7.3 53 157-215 134-217 (310)
34 PF13532 2OG-FeII_Oxy_2: 2OG-F 76.2 19 0.00042 27.8 7.8 58 157-222 99-166 (194)
35 PRK05467 Fe(II)-dependent oxyg 74.8 19 0.00041 29.2 7.5 30 192-221 129-158 (226)
36 TIGR02409 carnitine_bodg gamma 74.3 5.8 0.00013 34.5 4.7 52 2-58 108-159 (366)
37 PRK08333 L-fuculose phosphate 72.1 6.7 0.00015 30.5 4.2 36 3-41 120-155 (184)
38 PRK08130 putative aldolase; Va 71.6 6.5 0.00014 31.4 4.1 36 3-41 127-162 (213)
39 COG2140 Thermophilic glucose-6 63.7 16 0.00034 29.2 4.6 58 156-219 91-151 (209)
40 PRK05874 L-fuculose-phosphate 63.1 11 0.00025 30.2 3.9 36 3-41 127-162 (217)
41 PRK08660 L-fuculose phosphate 58.5 15 0.00032 28.5 3.8 35 3-41 115-149 (181)
42 PRK06833 L-fuculose phosphate 56.6 15 0.00033 29.3 3.6 36 3-41 124-159 (214)
43 PF00596 Aldolase_II: Class II 55.4 9.5 0.00021 29.4 2.2 49 3-54 123-174 (184)
44 PRK08087 L-fuculose phosphate 54.4 31 0.00067 27.6 5.1 36 3-41 122-157 (215)
45 TIGR02410 carnitine_TMLD trime 54.3 22 0.00047 30.9 4.5 50 4-57 101-150 (362)
46 TIGR01086 fucA L-fuculose phos 52.4 19 0.00042 28.7 3.6 36 3-41 121-156 (214)
47 PRK03634 rhamnulose-1-phosphat 52.4 21 0.00046 29.8 3.9 35 4-41 180-214 (274)
48 PF06820 Phage_fiber_C: Putati 51.3 15 0.00033 22.9 2.1 35 172-207 16-61 (64)
49 PRK06755 hypothetical protein; 51.2 26 0.00056 28.0 4.1 36 3-41 136-171 (209)
50 PRK06357 hypothetical protein; 47.5 35 0.00076 27.3 4.3 36 3-41 130-171 (216)
51 PRK05834 hypothetical protein; 45.1 25 0.00054 27.7 3.1 37 4-41 122-160 (194)
52 PRK06557 L-ribulose-5-phosphat 44.5 28 0.0006 27.9 3.4 36 3-41 130-167 (221)
53 PF11243 DUF3045: Protein of u 44.0 21 0.00045 23.8 2.0 21 22-42 36-56 (89)
54 PF01471 PG_binding_1: Putativ 43.3 39 0.00084 20.3 3.2 43 19-61 3-45 (57)
55 cd00398 Aldolase_II Class II A 43.2 23 0.0005 28.0 2.7 38 3-41 122-159 (209)
56 PRK09553 tauD taurine dioxygen 43.1 55 0.0012 27.2 5.0 39 18-59 27-65 (277)
57 TIGR02624 rhamnu_1P_ald rhamnu 43.1 50 0.0011 27.5 4.7 35 4-41 178-212 (270)
58 PRK06661 hypothetical protein; 42.5 34 0.00073 27.7 3.6 24 18-41 137-160 (231)
59 PF03668 ATP_bind_2: P-loop AT 41.7 78 0.0017 26.6 5.6 40 9-54 6-45 (284)
60 cd00379 Ribosomal_L10_P0 Ribos 39.7 1.2E+02 0.0025 22.5 6.0 38 17-54 3-41 (155)
61 TIGR03328 salvage_mtnB methylt 39.2 46 0.001 26.0 3.8 34 4-41 127-163 (193)
62 PRK04516 minC septum formation 38.3 77 0.0017 25.9 4.9 41 3-44 46-87 (235)
63 PF00046 Homeobox: Homeobox do 37.8 46 0.001 19.9 2.9 40 108-147 9-48 (57)
64 PRK04596 minC septum formation 37.3 62 0.0014 26.6 4.3 43 6-48 54-96 (248)
65 PRK15401 alpha-ketoglutarate-d 36.3 1.2E+02 0.0026 24.4 5.7 55 159-220 120-183 (213)
66 COG0289 DapB Dihydrodipicolina 35.3 1.1E+02 0.0023 25.5 5.4 44 6-55 73-117 (266)
67 PF01113 DapB_N: Dihydrodipico 34.1 68 0.0015 23.0 3.7 43 6-54 71-114 (124)
68 COG3113 Predicted NTP binding 34.1 79 0.0017 22.1 3.8 41 4-45 41-83 (99)
69 PF15167 DUF4581: Domain of un 32.0 1.3E+02 0.0028 21.5 4.6 40 109-148 62-109 (128)
70 PF02668 TauD: Taurine catabol 30.2 1E+02 0.0022 24.6 4.6 35 19-56 24-58 (258)
71 PRK15331 chaperone protein Sic 30.1 60 0.0013 25.0 2.9 43 17-60 9-51 (165)
72 smart00460 TGc Transglutaminas 29.6 48 0.001 20.5 2.1 17 194-210 52-68 (68)
73 PF06560 GPI: Glucose-6-phosph 29.5 99 0.0022 24.2 4.1 38 181-220 92-136 (182)
74 PRK08193 araD L-ribulose-5-pho 29.4 95 0.0021 25.1 4.2 39 3-41 124-172 (231)
75 cd05797 Ribosomal_L10 Ribosoma 27.8 2E+02 0.0043 21.5 5.5 38 17-54 5-43 (157)
76 TIGR00568 alkb DNA alkylation 27.7 2.8E+02 0.0061 21.3 7.2 56 158-220 98-162 (169)
77 PRK07044 aldolase II superfami 27.7 93 0.002 25.5 3.9 37 3-41 138-174 (252)
78 PRK06754 mtnB methylthioribulo 27.6 61 0.0013 25.7 2.8 24 18-41 148-172 (208)
79 TIGR00760 araD L-ribulose-5-ph 27.5 99 0.0022 25.0 4.0 24 18-41 143-173 (231)
80 PRK01964 4-oxalocrotonate taut 27.1 98 0.0021 19.1 3.2 24 119-142 15-38 (64)
81 PF03460 NIR_SIR_ferr: Nitrite 26.8 1.3E+02 0.0029 18.7 3.9 38 18-55 23-68 (69)
82 PRK09220 methylthioribulose-1- 26.8 72 0.0016 25.2 3.1 25 17-41 144-171 (204)
83 PF04914 DltD_C: DltD C-termin 26.6 34 0.00073 25.2 1.0 33 22-54 39-82 (130)
84 PRK02289 4-oxalocrotonate taut 26.6 78 0.0017 19.4 2.6 24 119-142 15-38 (60)
85 cd05796 Ribosomal_P0_like Ribo 26.6 1.9E+02 0.0041 21.9 5.2 38 17-54 3-41 (163)
86 PF01361 Tautomerase: Tautomer 26.5 1.1E+02 0.0023 18.6 3.2 24 119-142 14-37 (60)
87 PF11848 DUF3368: Domain of un 26.3 1.3E+02 0.0027 17.8 3.3 28 20-53 20-47 (48)
88 PF08823 PG_binding_2: Putativ 26.2 1.2E+02 0.0025 19.9 3.4 34 18-51 15-48 (74)
89 PF02037 SAP: SAP domain; Int 25.4 99 0.0021 16.8 2.6 28 21-51 6-33 (35)
90 PRK02220 4-oxalocrotonate taut 25.4 1.2E+02 0.0025 18.4 3.3 24 119-142 15-38 (61)
91 cd05795 Ribosomal_P0_L10e Ribo 25.1 2.3E+02 0.005 21.7 5.5 39 17-55 3-42 (175)
92 PF00356 LacI: Bacterial regul 24.6 73 0.0016 18.7 2.0 18 17-34 27-44 (46)
93 cd00086 homeodomain Homeodomai 24.5 1E+02 0.0023 18.2 2.9 41 108-148 9-49 (59)
94 PRK06208 hypothetical protein; 24.3 76 0.0016 26.5 2.8 24 18-41 177-200 (274)
95 cd00250 CAS_like Clavaminic ac 24.3 1.2E+02 0.0026 24.7 4.0 49 3-56 18-66 (262)
96 PRK00745 4-oxalocrotonate taut 24.2 1.1E+02 0.0024 18.6 3.1 24 119-142 15-38 (62)
97 PF12368 DUF3650: Protein of u 23.9 38 0.00082 17.8 0.6 16 34-49 9-24 (28)
98 COG1660 Predicted P-loop-conta 23.9 2.4E+02 0.0052 23.7 5.5 42 7-54 4-45 (286)
99 TIGR00013 taut 4-oxalocrotonat 23.3 1.3E+02 0.0027 18.4 3.1 23 119-141 15-37 (63)
100 PRK06486 hypothetical protein; 23.1 82 0.0018 26.1 2.8 24 18-41 162-185 (262)
101 PRK00099 rplJ 50S ribosomal pr 23.1 3.1E+02 0.0067 20.8 5.9 39 17-55 6-45 (172)
102 cd00491 4Oxalocrotonate_Tautom 22.3 1.3E+02 0.0029 17.8 3.1 23 119-141 14-36 (58)
103 PRK07490 hypothetical protein; 21.9 89 0.0019 25.5 2.8 24 18-41 146-169 (245)
104 smart00513 SAP Putative DNA-bi 21.1 1.6E+02 0.0034 15.9 2.9 28 21-51 6-33 (35)
105 TIGR01565 homeo_ZF_HD homeobox 21.0 1.1E+02 0.0023 19.1 2.4 40 108-147 10-53 (58)
106 PF10055 DUF2292: Uncharacteri 21.0 75 0.0016 18.0 1.5 19 178-198 13-31 (38)
107 TIGR02408 ectoine_ThpD ectoine 20.8 2E+02 0.0042 23.9 4.7 40 20-60 17-56 (277)
108 TIGR02130 dapB_plant dihydrodi 20.6 2.7E+02 0.0058 23.3 5.3 38 6-49 73-111 (275)
109 PF01381 HTH_3: Helix-turn-hel 20.5 31 0.00067 20.5 -0.2 20 130-149 13-32 (55)
110 PF11043 DUF2856: Protein of u 20.5 1.6E+02 0.0034 19.7 3.1 24 43-66 20-43 (97)
111 KOG0325 Lipoyltransferase [Ene 20.4 77 0.0017 25.5 2.0 28 4-32 98-125 (226)
112 COG1366 SpoIIAA Anti-anti-sigm 20.3 3.1E+02 0.0068 19.1 5.2 40 6-46 48-89 (117)
113 PTZ00397 macrophage migration 20.1 1.3E+02 0.0029 21.2 3.1 23 119-141 72-94 (116)
No 1
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=100.00 E-value=1.4e-65 Score=433.96 Aligned_cols=225 Identities=82% Similarity=1.387 Sum_probs=204.0
Q ss_pred CCCCcEEeCCCCCCCcHHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHHhcCCHHHHhHhhhcCCCccccccc
Q 027317 1 MENFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASKGLEAVQSE 80 (225)
Q Consensus 1 m~~iP~IDl~~l~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~Gy~~~~~~ 80 (225)
|++||+|||+.+.+.++.+++++|++||++||||||+|||||.++++++++.+++||+||.|+|+++....+||.++..+
T Consensus 4 ~~~iPvIDls~~~~~~~~~~~~~l~~A~~~~GFF~v~nHGI~~~l~~~~~~~~~~fF~LP~e~K~~~~~~~~gy~~~~~~ 83 (321)
T PLN02299 4 MESFPVIDMEKLNGEERAATMELIKDACENWGFFELVNHGISHELMDEVEKMTKEHYKKCMEQRFKEMVASKGLEGVQTE 83 (321)
T ss_pred CCCCCEEECcCCCcccHHHHHHHHHHHHHhcCEEEEECCCCCHHHHHHHHHHHHHHhCCCHHHHHhcccCCCCccccccc
Confidence 67899999999876667789999999999999999999999999999999999999999999999976667899887766
Q ss_pred ccCCCCccceeccccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCceeeeee
Q 027317 81 VNDLDWESTFFLRHLPVSNMAEIPDLEDDYRKAMKEFAVELEKVAEQLLELLCENLGLEEGYLKKVFYGSKGPTFGTKVS 160 (225)
Q Consensus 81 ~~~~d~~e~~~~~~~~~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~~~~~~~~lr~~ 160 (225)
....||+|.|.++..|..+.+.||+.+++||+.+++|+++|.+++.+||++++++||+++++|.+.+....++.+.+|++
T Consensus 84 ~~~~d~ke~~~~~~~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lRl~ 163 (321)
T PLN02299 84 VEDLDWESTFFLRHLPESNLADIPDLDDEYRKVMKDFALELEKLAEELLDLLCENLGLEKGYLKKAFHGSKGPTFGTKVS 163 (321)
T ss_pred CCCcCHHHHcccccCCccccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCccceeeeE
Confidence 66779999998876565566889998899999999999999999999999999999999999988776433345679999
Q ss_pred ecCCCCCCCCCCCccccccCCceeEEEeCCCCCceeEeeCCceEecCCCCCcEEEEhhhHhhhcC
Q 027317 161 NYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVIN 225 (225)
Q Consensus 161 ~Yp~~~~~~~~~g~~~HtD~g~lTlL~q~~~~~GLqV~~~g~W~~v~p~~g~~vVnvGD~l~~~T 225 (225)
|||||+.++...|+++|||+|+||||+|++.++||||+++|+|++|+|.||++|||+||+||+||
T Consensus 164 ~YPp~~~~~~~~G~~~HTD~g~lTlL~qd~~v~GLQV~~~g~Wi~V~p~pg~lvVNiGD~l~~~T 228 (321)
T PLN02299 164 NYPPCPKPDLVKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWVDVPPMRHSIVVNLGDQLEVIT 228 (321)
T ss_pred ecCCCCCcccccCccCccCCCeEEEEEecCCCCCcCcccCCeEEECCCCCCeEEEEeCHHHHHHh
Confidence 99999988777899999999999999996459999999899999999999999999999999998
No 2
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=100.00 E-value=1.6e-62 Score=398.94 Aligned_cols=220 Identities=30% Similarity=0.539 Sum_probs=198.6
Q ss_pred CCCCcEEeCCCCCC---CcHHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHHhcCCHHHHhHhh----hcCCC
Q 027317 1 MENFPIIDLSKLNG---DERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQM----VASKG 73 (225)
Q Consensus 1 m~~iP~IDl~~l~~---~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~----~~~~G 73 (225)
|..||+|||+.+.. .+|..++++|++||+++|||||+||||+.++++++++++++||+||.|+|.++. ...+|
T Consensus 3 ~~~lp~idls~~~~~~~~~~~~~~~~l~~A~r~~GFf~l~~~~i~~~~~~~~~~~arqFFaLp~eeK~~~~~~~~~~~rG 82 (322)
T COG3491 3 TRDLPIIDLSELAGSDPGARRRVAQELRAACREIGFFYLVNHGIDAALIDEAFALARQFFALPVEEKLKILMVLGRQHRG 82 (322)
T ss_pred CCcCceeccHHhcCCCcHHHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhcCccccc
Confidence 45899999999864 368999999999999999999999999999999999999999999999999864 24689
Q ss_pred cccccccc--cCCCCccceecccc------------CCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 027317 74 LEAVQSEV--NDLDWESTFFLRHL------------PVSNMAEIPDLEDDYRKAMKEFAVELEKVAEQLLELLCENLGLE 139 (225)
Q Consensus 74 y~~~~~~~--~~~d~~e~~~~~~~------------~~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~ 139 (225)
|.+.+.|. +..||+|.++++.. +.+.+|.|| ..|+||+++..|+++|.+++.+||++||.+|+|+
T Consensus 83 Y~~~~~E~t~g~~d~kE~~d~g~~~~~~~~~~~~~~~~~gpN~wP-~ip~~r~~ll~~~~~~~~~~~rLL~aiA~~LdL~ 161 (322)
T COG3491 83 YTPHGGELTDGEPDYKEGLDMGPDLDAELAGVRAGTPLHGPNLWP-AIPGLRDALLQYYRAMTAVGLRLLRAIALGLDLP 161 (322)
T ss_pred cccCcccccCCccchhhhcccccccccccCCCccCCCcCCCCCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 98877763 45699999988631 345789999 7899999999999999999999999999999999
Q ss_pred hhhHHHHhcCCCCCceeeeeeecCCCCCCCCCCCccccccCCceeEEEeCCCCCceeEeeC-CceEecCCCCCcEEEEhh
Q 027317 140 EGYLKKVFYGSKGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKD-DQWVDVPPMKHSIVINLG 218 (225)
Q Consensus 140 ~~~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q~~~~~GLqV~~~-g~W~~v~p~~g~~vVnvG 218 (225)
+++|.+.+.+ +.+.+|++|||+.+..+...+.|+|||+|+||||+|| .++||||+.+ |+|++|+|+||++|||+|
T Consensus 162 ~d~Fd~~~~d---~~~~~RLlrYP~~~~~~~~~~~GaHtD~G~lTLl~Qd-~~~GLqv~~~~g~Wl~v~P~pgtlvVNiG 237 (322)
T COG3491 162 EDFFDKRTSD---PNSVLRLLRYPSRPAREGADGVGAHTDYGLLTLLFQD-DVGGLEVRPPNGGWLDVPPIPGTLVVNIG 237 (322)
T ss_pred hhhhhhccCC---chheEEEEecCCCcccccccccccccCCCeEEEEEec-ccCCeEEecCCCCeeECCCCCCeEEEeHH
Confidence 9999998554 5678999999999988877889999999999999998 6999999965 999999999999999999
Q ss_pred hHhhhcC
Q 027317 219 DQLEVIN 225 (225)
Q Consensus 219 D~l~~~T 225 (225)
||||+||
T Consensus 238 dmLe~~T 244 (322)
T COG3491 238 DMLERWT 244 (322)
T ss_pred HHHHHHh
Confidence 9999998
No 3
>PLN02216 protein SRG1
Probab=100.00 E-value=4e-62 Score=418.40 Aligned_cols=221 Identities=33% Similarity=0.676 Sum_probs=193.0
Q ss_pred CCcEEeCCCCCCC-cHHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHHhcCCHHHHhHhhhc---CCCccccc
Q 027317 3 NFPIIDLSKLNGD-ERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVA---SKGLEAVQ 78 (225)
Q Consensus 3 ~iP~IDl~~l~~~-~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~---~~Gy~~~~ 78 (225)
+||+|||+.+.+. .+.+++++|++||++||||||+||||+.++++++++.+++||+||.|+|+++... .+||....
T Consensus 52 ~iPvIDls~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~~~~ 131 (357)
T PLN02216 52 EIPIIDMKRLCSSTAMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQAF 131 (357)
T ss_pred CCCeEEChhccCCccHHHHHHHHHHHHHHCcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhhcCCCCccccCccc
Confidence 6999999988643 3467899999999999999999999999999999999999999999999997432 35664322
Q ss_pred c--cccCCCCccceeccccC--CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCc
Q 027317 79 S--EVNDLDWESTFFLRHLP--VSNMAEIPDLEDDYRKAMKEFAVELEKVAEQLLELLCENLGLEEGYLKKVFYGSKGPT 154 (225)
Q Consensus 79 ~--~~~~~d~~e~~~~~~~~--~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~~~~~~ 154 (225)
. .....||+|.|++...| ...+|.||+.+++||+++++|+++|.+|+.+||++||++||+++++|.+.+... ..
T Consensus 132 ~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~p~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~--~~ 209 (357)
T PLN02216 132 VVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLETYSAEVKSIAKILFAKMASALEIKPEEMEKLFDDD--LG 209 (357)
T ss_pred cccccccCCceeeeeeeccCcccccchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccC--ch
Confidence 1 23456999999775433 345788999889999999999999999999999999999999999999887642 23
Q ss_pred eeeeeeecCCCCCCCCCCCccccccCCceeEEEeCCCCCceeEeeCCceEecCCCCCcEEEEhhhHhhhcC
Q 027317 155 FGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVIN 225 (225)
Q Consensus 155 ~~lr~~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q~~~~~GLqV~~~g~W~~v~p~~g~~vVnvGD~l~~~T 225 (225)
+.||++|||||+.++..+|+++|||+|+||||+|+++++||||+++|+|++|+|+||++|||+||+||+||
T Consensus 210 ~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~L~~~T 280 (357)
T PLN02216 210 QSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEGLQIKKDGKWVSVKPLPNALVVNVGDILEIIT 280 (357)
T ss_pred heeEEeecCCCCCcccccCccCcccCceEEEEEecCCCCceeEEECCEEEECCCCCCeEEEEcchhhHhhc
Confidence 57999999999988888999999999999999996469999999999999999999999999999999998
No 4
>PLN02997 flavonol synthase
Probab=100.00 E-value=2.9e-61 Score=408.06 Aligned_cols=217 Identities=29% Similarity=0.539 Sum_probs=191.1
Q ss_pred CCcEEeCCCCCCCcHHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHHhcCCHHHHhHhhh--cCCCccccccc
Q 027317 3 NFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMV--ASKGLEAVQSE 80 (225)
Q Consensus 3 ~iP~IDl~~l~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~--~~~Gy~~~~~~ 80 (225)
+||+|||+.+ ++++++++|.+||+++|||||+||||+.++++++++++++||+||.|+|+++.. ..+||.+...
T Consensus 32 ~IPvIDls~~---~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~GY~~~~~- 107 (325)
T PLN02997 32 DVPVVDLSVS---DEDFLVREVVKASEEWGVFQVVNHGIPTELMRQLQMVGKQFFELPEAEKETVAKEEDFEGYKRNYL- 107 (325)
T ss_pred CCCeEECCCC---CHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccCCCccccCcccc-
Confidence 6999999975 356789999999999999999999999999999999999999999999998643 3578876433
Q ss_pred ccCCCCccceeccccCC--CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCceeee
Q 027317 81 VNDLDWESTFFLRHLPV--SNMAEIPDLEDDYRKAMKEFAVELEKVAEQLLELLCENLGLEEGYLKKVFYGSKGPTFGTK 158 (225)
Q Consensus 81 ~~~~d~~e~~~~~~~~~--~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~~~~~~~~lr 158 (225)
.+..||+|.++....|. ...|.||+.+++||+++++|+++|.+++.+|+++|+++||+++++|.+.+.... ..+.||
T Consensus 108 ~~~~d~~e~~~~~~~p~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~ia~~Lgl~~~~f~~~~~~~~-~~~~lR 186 (325)
T PLN02997 108 GGINNWDEHLFHRLSPPSIINYKYWPKNPPQYREVTEEYTKHMKRLTEKILGWLSEGLGLPRETFTQSIGGET-AEYVLR 186 (325)
T ss_pred cCCCCccceeEeeecCccccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCc-ccceee
Confidence 34568999876543332 245889998899999999999999999999999999999999999999886432 335799
Q ss_pred eeecCCCCCCCCCCCccccccCCceeEEEeCCCCCceeEeeCCceEecCCCCCcEEEEhhhHhhhcC
Q 027317 159 VSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVIN 225 (225)
Q Consensus 159 ~~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q~~~~~GLqV~~~g~W~~v~p~~g~~vVnvGD~l~~~T 225 (225)
++||||++.++..+|+++|||+|+||||+|| +++||||+++|+|++|+|.||++|||+||+||+||
T Consensus 187 l~~YP~~~~~~~~~g~~~HTD~g~lTlL~Qd-~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~Le~~T 252 (325)
T PLN02997 187 VNFYPPTQDTELVIGAAAHSDMGAIALLIPN-EVPGLQAFKDEQWLDLNYINSAVVVIIGDQLMRMT 252 (325)
T ss_pred eecCCCCCCcccccCccCccCCCceEEEecC-CCCCEEEeECCcEEECCCCCCeEEEEechHHHHHh
Confidence 9999999988778999999999999999998 69999999999999999999999999999999998
No 5
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=2.4e-61 Score=412.28 Aligned_cols=220 Identities=31% Similarity=0.638 Sum_probs=192.2
Q ss_pred CCCcEEeCCCCCCCcHHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHHhcCCHHHHhHh-hhc----CCCccc
Q 027317 2 ENFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQ-MVA----SKGLEA 76 (225)
Q Consensus 2 ~~iP~IDl~~l~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~-~~~----~~Gy~~ 76 (225)
.+||+|||+.+.+.++.+++++|++||+++|||||+||||+.++++++++.+++||+||.|+|+++ ... .++|+.
T Consensus 40 ~~iPvIDls~~~~~~~~~~~~~l~~A~~~~GFf~v~nHGI~~~l~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~~~~~ 119 (348)
T PLN02912 40 DSIPLIDLRDLHGPNRADIINQFAHACSSYGFFQIKNHGVPEETIKKMMNVAREFFHQSESERVKHYSADTKKTTRLSTS 119 (348)
T ss_pred CCCCeEECcccCCcCHHHHHHHHHHHHHHCCEEEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHhHhhcCCCCccccccc
Confidence 469999999987666788999999999999999999999999999999999999999999999994 322 134443
Q ss_pred ccc-cccCCCCccceeccccCC-CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCc
Q 027317 77 VQS-EVNDLDWESTFFLRHLPV-SNMAEIPDLEDDYRKAMKEFAVELEKVAEQLLELLCENLGLEEGYLKKVFYGSKGPT 154 (225)
Q Consensus 77 ~~~-~~~~~d~~e~~~~~~~~~-~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~~~~~~ 154 (225)
+.. .....+|+|.+.+...+. ..+|.||+.+++||+++++|+++|.+++.+|++++|++||+++++|.+.+.. ..
T Consensus 120 ~~~~~~~~~~~~e~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~il~~la~~Lgl~~~~f~~~~~~---~~ 196 (348)
T PLN02912 120 FNVSKEKVSNWRDFLRLHCYPIEDFIEEWPSTPISFREVTAEYATSVRALVLTLLEAISESLGLEKDRVSNTLGK---HG 196 (348)
T ss_pred ccccccccCCchheEEEeecCcccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcC---cc
Confidence 321 123568999987754442 2468999988999999999999999999999999999999999999987754 34
Q ss_pred eeeeeeecCCCCCCCCCCCccccccCCceeEEEeCCCCCceeEeeCCceEecCCCCCcEEEEhhhHhhhcC
Q 027317 155 FGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVIN 225 (225)
Q Consensus 155 ~~lr~~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q~~~~~GLqV~~~g~W~~v~p~~g~~vVnvGD~l~~~T 225 (225)
+.||++|||||+.++..+|+++|||+|+||||+|| +++||||+++|+|++|+|+||++|||+||+||+||
T Consensus 197 ~~lrl~~YPp~~~~~~~~G~~~HtD~g~lTlL~Qd-~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~L~~~T 266 (348)
T PLN02912 197 QHMAINYYPPCPQPELTYGLPGHKDANLITVLLQD-EVSGLQVFKDGKWIAVNPIPNTFIVNLGDQMQVIS 266 (348)
T ss_pred ceeeeeecCCCCChhhcCCcCCCcCCCceEEEEEC-CCCceEEEECCcEEECCCcCCeEEEEcCHHHHHHh
Confidence 67999999999987778999999999999999998 69999999999999999999999999999999998
No 6
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=100.00 E-value=2.9e-61 Score=404.18 Aligned_cols=222 Identities=50% Similarity=1.005 Sum_probs=191.5
Q ss_pred CCcEEeCCCCCCCcHHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHHhcCCHHHHhHhhhcCCCccccccccc
Q 027317 3 NFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASKGLEAVQSEVN 82 (225)
Q Consensus 3 ~iP~IDl~~l~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~Gy~~~~~~~~ 82 (225)
+||+|||+.+.+.++++++++|++||++||||||+||||+.++++++++.+++||+||.++|.......+++...+ ...
T Consensus 2 ~iPvIDls~~~~~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~~~~FF~LP~e~k~~~~~~~~~~~~~~-~~~ 80 (303)
T PLN02403 2 EIPVIDFDQLDGEKRSKTMSLLHQACEKWGFFQVENHGIDKKLMEKVKQLVNSHYEENLKESFYESEIAKALDNEG-KTS 80 (303)
T ss_pred CCCeEeCccCCcccHHHHHHHHHHHHHhCceEEEECCCCCHHHHHHHHHHHHHHhcCCHHHHhhcccccCcccccC-CCC
Confidence 5999999988766678899999999999999999999999999999999999999999999963222223332111 124
Q ss_pred CCCCccceeccccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCceeeeeeec
Q 027317 83 DLDWESTFFLRHLPVSNMAEIPDLEDDYRKAMKEFAVELEKVAEQLLELLCENLGLEEGYLKKVFYGSKGPTFGTKVSNY 162 (225)
Q Consensus 83 ~~d~~e~~~~~~~~~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~~~~~~~~lr~~~Y 162 (225)
..||+|.|.++..|..+.|.||+.+|+||+++++|+++|.+++..|+++++++||+++++|.+.+...+++.+.+|++||
T Consensus 81 ~~d~kE~~~~~~~p~~~~~~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~Y 160 (303)
T PLN02403 81 DVDWESSFFIWHRPTSNINEIPNLSEDLRKTMDEYIAQLIKLAEKLSELMSENLGLDKDYIKEAFSGNKGPSVGTKVAKY 160 (303)
T ss_pred CccHhhhcccccCCccchhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCCCccceeeeEcC
Confidence 56999999887666556788999889999999999999999999999999999999999999887643334456999999
Q ss_pred CCCCCCCCCCCccccccCCceeEEEeCCCCCceeEeeCCceEecCCCC-CcEEEEhhhHhhhcC
Q 027317 163 PPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMK-HSIVINLGDQLEVIN 225 (225)
Q Consensus 163 p~~~~~~~~~g~~~HtD~g~lTlL~q~~~~~GLqV~~~g~W~~v~p~~-g~~vVnvGD~l~~~T 225 (225)
|+++.++...|+++|||+|+||||+|++.++||||+++|+|++|+|.| |++|||+||+||+||
T Consensus 161 P~~~~~~~~~G~~~HtD~g~lTlL~q~~~v~GLqV~~~g~Wi~V~p~p~~~lvVNvGD~L~~~T 224 (303)
T PLN02403 161 PECPRPELVRGLREHTDAGGIILLLQDDQVPGLEFLKDGKWVPIPPSKNNTIFVNTGDQLEVLS 224 (303)
T ss_pred CCCCCcccccCccCccCCCeEEEEEecCCCCceEeccCCeEEECCCCCCCEEEEEehHHHHHHh
Confidence 999877777899999999999999997459999999899999999999 699999999999998
No 7
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=6.7e-61 Score=409.84 Aligned_cols=219 Identities=32% Similarity=0.636 Sum_probs=192.0
Q ss_pred CCcEEeCCCCCCCcHHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHHhcCCHHHHhHhhhc---CCCcccccc
Q 027317 3 NFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVA---SKGLEAVQS 79 (225)
Q Consensus 3 ~iP~IDl~~l~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~---~~Gy~~~~~ 79 (225)
+||+|||+.+.+.++.+++++|.+||+++|||||+||||+.++++++++.+++||+||.|+|+++... .+||.+...
T Consensus 26 ~iPvIDls~~~~~~~~~~~~~l~~Ac~~~GFf~v~nHGi~~~l~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~GY~~~~~ 105 (345)
T PLN02750 26 EIPVIDLSVSTSHDKTEVASKIGEACKKWGFFQVINHGVPSELRQRVEKVAKEFFDQTTEEKRKVKRDEVNPMGYHDSEH 105 (345)
T ss_pred CCCeEECCCCCcccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCccCcCcccc
Confidence 69999999876667888999999999999999999999999999999999999999999999986432 368864322
Q ss_pred cccCCCCccceecccc-----CC-----C-----CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHH
Q 027317 80 EVNDLDWESTFFLRHL-----PV-----S-----NMAEIPDLEDDYRKAMKEFAVELEKVAEQLLELLCENLGLEEGYLK 144 (225)
Q Consensus 80 ~~~~~d~~e~~~~~~~-----~~-----~-----~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~ 144 (225)
..+..||+|.|.+... |. . .+|.||+.+++||+++++|++.|.+|+.+|+++||++||+++++|.
T Consensus 106 ~~~~~d~kE~~~~~~~~~~~~p~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~ 185 (345)
T PLN02750 106 TKNIRDWKEVFDFLVQDPTLVPASPDPEDTELRKLTNQWPQNPSHFRELCQEYARQVEKLAFKLLELISLSLGLPADRLN 185 (345)
T ss_pred cccCCCceeEEEEeecccccccccccccccccccccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 2234699999976421 10 0 1589999889999999999999999999999999999999999999
Q ss_pred HHhcCCCCCceeeeeeecCCCCCCCCCCCccccccCCceeEEEeCCCCCceeEee--CCceEecCCCCCcEEEEhhhHhh
Q 027317 145 KVFYGSKGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLK--DDQWVDVPPMKHSIVINLGDQLE 222 (225)
Q Consensus 145 ~~~~~~~~~~~~lr~~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q~~~~~GLqV~~--~g~W~~v~p~~g~~vVnvGD~l~ 222 (225)
+.+.. +.+.||++||||++.++..+|+++|||+|+||||+|| +++||||+. +|+|++|+|+||++|||+||+||
T Consensus 186 ~~~~~---~~~~lR~~~YPp~~~~~~~~g~~~HtD~g~lTlL~qd-~v~GLQV~~~~~g~Wi~V~p~pg~~vVNiGD~L~ 261 (345)
T PLN02750 186 GYFKD---QISFARFNHYPPCPAPHLALGVGRHKDGGALTVLAQD-DVGGLQISRRSDGEWIPVKPIPDAFIINIGNCMQ 261 (345)
T ss_pred HHhcC---cceEEEEEecCCCCCcccccCcCCCCCCCeEEEEecC-CCCceEEeecCCCeEEEccCCCCeEEEEhHHHHH
Confidence 98864 4578999999999887778899999999999999998 699999974 79999999999999999999999
Q ss_pred hcC
Q 027317 223 VIN 225 (225)
Q Consensus 223 ~~T 225 (225)
+||
T Consensus 262 ~~T 264 (345)
T PLN02750 262 VWT 264 (345)
T ss_pred HHh
Confidence 998
No 8
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=100.00 E-value=3.5e-61 Score=413.50 Aligned_cols=222 Identities=33% Similarity=0.616 Sum_probs=193.3
Q ss_pred CCcEEeCCCCCCC---cHHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHHhcCCHHHHhHhhhc-----CCCc
Q 027317 3 NFPIIDLSKLNGD---ERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVA-----SKGL 74 (225)
Q Consensus 3 ~iP~IDl~~l~~~---~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~-----~~Gy 74 (225)
+||+|||+.+.+. +|..++++|.+||+++|||||+||||+.++++++++.+++||+||.|+|+++... .+||
T Consensus 47 ~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~~~~Gy 126 (360)
T PLN03178 47 QVPVVDLSNIESDDEVVREACVEAVRAAAAEWGVMHLVGHGIPADLLDRVRKAGEAFFRLPIEEKEKYANDQARGAAQGY 126 (360)
T ss_pred CCCEEEchhhcCCChhhHHHHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHHhhccCCCCCcccc
Confidence 6999999998632 3678999999999999999999999999999999999999999999999997532 3577
Q ss_pred cccccc--ccCCCCccceeccccCC--CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHhcCC
Q 027317 75 EAVQSE--VNDLDWESTFFLRHLPV--SNMAEIPDLEDDYRKAMKEFAVELEKVAEQLLELLCENLGLEEGYLKKVFYGS 150 (225)
Q Consensus 75 ~~~~~~--~~~~d~~e~~~~~~~~~--~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~~ 150 (225)
.....+ .+..||+|.+.....|. ..+|.||+.+++||+.+++|+++|.+++.+||++||++||+++++|.+.+...
T Consensus 127 ~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~ 206 (360)
T PLN03178 127 GSKLAANASGQLEWEDYFFHLTLPEDKRDPSLWPKTPPDYVPATSEYSRSLRSLATKLLAILSLGLGLPEDRLEKEVGGL 206 (360)
T ss_pred ccccccccccccchhHhhccccCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCc
Confidence 432221 24468998876543332 34789999899999999999999999999999999999999999999988743
Q ss_pred CCCceeeeeeecCCCCCCCCCCCccccccCCceeEEEeCCCCCceeEeeCCceEecCCCCCcEEEEhhhHhhhcC
Q 027317 151 KGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVIN 225 (225)
Q Consensus 151 ~~~~~~lr~~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q~~~~~GLqV~~~g~W~~v~p~~g~~vVnvGD~l~~~T 225 (225)
..+.+.+|++|||+++.++..+|+++|||+|+||||+|+ .++||||+++|+|++|+|.||++|||+||+||+||
T Consensus 207 ~~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~qd-~v~GLQV~~~g~Wi~V~p~pg~lvVNiGD~L~~~T 280 (360)
T PLN03178 207 EELLLQMKINYYPRCPQPDLALGVEAHTDVSALTFILHN-MVPGLQVLYEGKWVTAKCVPDSIVVHIGDTLEILS 280 (360)
T ss_pred ccchhhhheeccCCCCCCccccCcCCccCCCceEEEeeC-CCCceeEeECCEEEEcCCCCCeEEEEccHHHHHHh
Confidence 224567999999999988888999999999999999998 69999999999999999999999999999999998
No 9
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=100.00 E-value=6.5e-61 Score=410.51 Aligned_cols=216 Identities=32% Similarity=0.625 Sum_probs=186.5
Q ss_pred CCcEEeCCCCCCCcHHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHHhcCCHHHHhHhhhcC---CCcccccc
Q 027317 3 NFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVAS---KGLEAVQS 79 (225)
Q Consensus 3 ~iP~IDl~~l~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~---~Gy~~~~~ 79 (225)
+||||||+. ..++++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++.... +||.....
T Consensus 56 ~iPvIDl~~------~~~~~~l~~Ac~~~GFF~vvnHGI~~~l~~~~~~~~~~FF~LP~EeK~k~~~~~~~~~Gy~~~~~ 129 (358)
T PLN02254 56 SIPVIDLSD------PNALTLIGHACETWGVFQVTNHGIPLSLLDDIESQTRRLFSLPAQRKLKAARSPDGVSGYGVARI 129 (358)
T ss_pred CCCeEeCCC------HHHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCccccccccc
Confidence 699999984 246899999999999999999999999999999999999999999999875433 45643222
Q ss_pred c--ccCCCCccceeccccCC-CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHhcC--CCCCc
Q 027317 80 E--VNDLDWESTFFLRHLPV-SNMAEIPDLEDDYRKAMKEFAVELEKVAEQLLELLCENLGLEEGYLKKVFYG--SKGPT 154 (225)
Q Consensus 80 ~--~~~~d~~e~~~~~~~~~-~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~--~~~~~ 154 (225)
. ....||+|.|.+...|. ...|.||+.+++||+++++|+++|.+|+.+||++|+++||+++++|.+.+.. ...+.
T Consensus 130 ~~~~~~~~w~e~~~~~~~p~~~~~~~wP~~~~~fr~~~~~Y~~~~~~L~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~ 209 (358)
T PLN02254 130 SSFFNKKMWSEGFTIMGSPLEHARQLWPQDHTKFCDVMEEYQKEMKKLAERLMWLMLGSLGITEEDIKWAGPKSGSQGAQ 209 (358)
T ss_pred ccccCCCCceeeEEeecCccccchhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcccccCcc
Confidence 2 24568999998754442 3468899988999999999999999999999999999999999999876631 12245
Q ss_pred eeeeeeecCCCCCCCCCCCccccccCCceeEEEeCCCCCceeEeeCC-ceEecCCCCCcEEEEhhhHhhhcC
Q 027317 155 FGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDD-QWVDVPPMKHSIVINLGDQLEVIN 225 (225)
Q Consensus 155 ~~lr~~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q~~~~~GLqV~~~g-~W~~v~p~~g~~vVnvGD~l~~~T 225 (225)
+.||++|||||+.++..+|+++|||+|+||||+|| .++||||+++| +|++|+|+||++|||+||+||+||
T Consensus 210 ~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTiL~Qd-~v~GLQV~~~~~~Wi~V~p~pgalVVNiGD~lq~~S 280 (358)
T PLN02254 210 AALQLNSYPVCPDPDRAMGLAPHTDSSLLTILYQS-NTSGLQVFREGVGWVTVPPVPGSLVVNVGDLLHILS 280 (358)
T ss_pred eeEEEecCCCCCCcccccCcCCccCCCcEEEEecC-CCCCceEECCCCEEEEcccCCCCEEEEhHHHHHHHh
Confidence 77999999999988888999999999999999998 69999999765 899999999999999999999998
No 10
>PLN02276 gibberellin 20-oxidase
Probab=100.00 E-value=5.6e-61 Score=412.12 Aligned_cols=219 Identities=25% Similarity=0.522 Sum_probs=192.4
Q ss_pred CCcEEeCCCCCC---CcHHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHHhcCCHHHHhHhhh---cCCCccc
Q 027317 3 NFPIIDLSKLNG---DERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMV---ASKGLEA 76 (225)
Q Consensus 3 ~iP~IDl~~l~~---~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~---~~~Gy~~ 76 (225)
+||+|||+.+.+ .++.+++++|.+||+++|||||+||||+.++++++++.+++||+||.|+|+++.. ..+||.+
T Consensus 40 ~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~~l~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~GY~~ 119 (361)
T PLN02276 40 AVPLIDLGGFLSGDEAATAEAARLVREACLKHGFFQVVNHGVDAALIRAAHEYMDAFFKLPLSEKQRAQRKPGESCGYAS 119 (361)
T ss_pred CCCeEEChhhcCCChHHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCccccCc
Confidence 699999999853 3467789999999999999999999999999999999999999999999998643 3578876
Q ss_pred ccccc--cCCCCccceeccccCC---------CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHH
Q 027317 77 VQSEV--NDLDWESTFFLRHLPV---------SNMAEIPDLEDDYRKAMKEFAVELEKVAEQLLELLCENLGLEEGYLKK 145 (225)
Q Consensus 77 ~~~~~--~~~d~~e~~~~~~~~~---------~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~ 145 (225)
.+.+. ...||+|.|.++..+. ..+|.||+..++||+.+++|+++|.+++..||++||++||+++++|.+
T Consensus 120 ~~~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~ 199 (361)
T PLN02276 120 SHTGRFSSKLPWKETLSFGYHADGGSSPVVVDYFKSVLGEDFEQFGKVYQEYCEAMKTLSLKIMELLGISLGVDRGYYRK 199 (361)
T ss_pred cCccccCCCCCeeeeEEEeccCcccccccchhcccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 54332 3568999998763221 123678877789999999999999999999999999999999999999
Q ss_pred HhcCCCCCceeeeeeecCCCCCCCCCCCccccccCCceeEEEeCCCCCceeEeeCCceEecCCCCCcEEEEhhhHhhhcC
Q 027317 146 VFYGSKGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVIN 225 (225)
Q Consensus 146 ~~~~~~~~~~~lr~~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q~~~~~GLqV~~~g~W~~v~p~~g~~vVnvGD~l~~~T 225 (225)
.+.. +.+.||++|||+|+.++..+|+++|||+|+||||+|| .++||||+++|+|++|+|+||++|||+||+||+||
T Consensus 200 ~~~~---~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~Qd-~v~GLQV~~~g~Wi~V~p~pgalVVNiGD~L~~~T 275 (361)
T PLN02276 200 FFED---GDSIMRCNYYPPCQEPELTLGTGPHCDPTSLTILHQD-QVGGLQVFVDNKWRSVRPRPGALVVNIGDTFMALS 275 (361)
T ss_pred HhcC---ccceeeeEeCCCCCCcccccCCccccCCceeEEEEec-CCCceEEEECCEEEEcCCCCCeEEEEcHHHHHHHh
Confidence 8754 3477999999999888888999999999999999998 79999999999999999999999999999999998
No 11
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=100.00 E-value=7.4e-61 Score=411.53 Aligned_cols=224 Identities=38% Similarity=0.745 Sum_probs=195.0
Q ss_pred CCCcEEeCCCCCCCc---HHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHHhcCCHHHHhHhhhc---CCCcc
Q 027317 2 ENFPIIDLSKLNGDE---RSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVA---SKGLE 75 (225)
Q Consensus 2 ~~iP~IDl~~l~~~~---~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~---~~Gy~ 75 (225)
++||+|||+.+.+.+ |.+++++|.+||+++|||||+||||+.++++++++.+++||+||.|+|+++... .+||.
T Consensus 50 ~~iPvIDls~l~~~~~~~r~~~~~~l~~Ac~~~GFF~l~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~Gy~ 129 (362)
T PLN02393 50 INIPVIDLSSLFSDDARLRDATLRAISEACREWGFFQVVNHGVRPELMDRAREAWREFFHLPLEVKQRYANSPATYEGYG 129 (362)
T ss_pred CCCCeEECccccCCChHHHHHHHHHHHHHHHHCcEEEEEeCCCCHHHHHHHHHHHHHHHcCCHHHHHhhhcccCcccccc
Confidence 469999999986433 678999999999999999999999999999999999999999999999987533 36773
Q ss_pred -cccccc-cCCCCccceeccccC--CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHhcCCC
Q 027317 76 -AVQSEV-NDLDWESTFFLRHLP--VSNMAEIPDLEDDYRKAMKEFAVELEKVAEQLLELLCENLGLEEGYLKKVFYGSK 151 (225)
Q Consensus 76 -~~~~~~-~~~d~~e~~~~~~~~--~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~~~ 151 (225)
..+.+. ...||+|.|+++..+ ...+|.||+.+++||+++++|+++|.+++.+||++++++||+++++|.+.+....
T Consensus 130 ~~~~~~~~~~~d~~e~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~f~~~~~~~~ 209 (362)
T PLN02393 130 SRLGVEKGAILDWSDYYFLHYLPSSLKDPNKWPSLPPSCRELIEEYGEEVVKLCGRLMKVLSVNLGLEEDRLQNAFGGED 209 (362)
T ss_pred cccccccccccCchhheeeeecCccccchhhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCc
Confidence 333332 356899998775433 2456899998899999999999999999999999999999999999999886533
Q ss_pred CCceeeeeeecCCCCCCCCCCCccccccCCceeEEEeCCCCCceeEeeCCceEecCCCCCcEEEEhhhHhhhcC
Q 027317 152 GPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVIN 225 (225)
Q Consensus 152 ~~~~~lr~~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q~~~~~GLqV~~~g~W~~v~p~~g~~vVnvGD~l~~~T 225 (225)
.+.+.+|++|||+++.++..+|+++|||+|+||||+|+++++||||+++|+|++|+|.||++|||+||+||+||
T Consensus 210 ~~~~~lRl~~YP~~p~~~~~~g~~~HtD~g~lTlL~q~~~v~GLQV~~~g~W~~V~p~pgalVVNiGD~l~~~T 283 (362)
T PLN02393 210 GVGACLRVNYYPKCPQPDLTLGLSPHSDPGGMTILLPDDNVAGLQVRRDDAWITVKPVPDAFIVNIGDQIQVLS 283 (362)
T ss_pred cccceeeeeecCCCCCcccccccccccCCceEEEEeeCCCCCcceeeECCEEEECCCCCCeEEEEcchhhHhhc
Confidence 23367999999999988778999999999999999986469999999999999999999999999999999998
No 12
>PLN02485 oxidoreductase
Probab=100.00 E-value=7e-61 Score=407.91 Aligned_cols=222 Identities=23% Similarity=0.439 Sum_probs=190.8
Q ss_pred CCCcEEeCCCCCC----------CcHHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHHhcCCHHHHhHhhh--
Q 027317 2 ENFPIIDLSKLNG----------DERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMV-- 69 (225)
Q Consensus 2 ~~iP~IDl~~l~~----------~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~-- 69 (225)
.+||+|||+.+.+ .++.+++++|.+||+++|||||+||||+.++++++++.+++||+||.|+|+++..
T Consensus 6 ~~iPvIDl~~l~~~~~~~~~~~~~~~~~~~~~l~~Ac~~~GFf~l~nHGi~~~l~~~~~~~~~~FF~lP~e~K~~~~~~~ 85 (329)
T PLN02485 6 KSIPVIDISPLVAKCDDPDMAEDPDVAEVVRQLDKACRDAGFFYVKGHGISDSLIKKVREVTHEFFELPYEEKLKIKMTP 85 (329)
T ss_pred CCCCeEechhhhccCcccccccchHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhcccC
Confidence 4699999998842 1356789999999999999999999999999999999999999999999998642
Q ss_pred --cCCCccccccc--ccCCCCccceeccc-c----------CCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027317 70 --ASKGLEAVQSE--VNDLDWESTFFLRH-L----------PVSNMAEIPDLEDDYRKAMKEFAVELEKVAEQLLELLCE 134 (225)
Q Consensus 70 --~~~Gy~~~~~~--~~~~d~~e~~~~~~-~----------~~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~ 134 (225)
..+||.+.+.+ .+..||+|.|.+.. . +...+|.||+.+++||+.+++|+++|.+++.+||+++|+
T Consensus 86 ~~~~rGY~~~g~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~~a~ 165 (329)
T PLN02485 86 AAGYRGYQRIGENVTKGKPDMHEAIDCYREFKPGKYGDLGKVMEGPNQWPENPQEFKALMEEYIKLCTDLSRKILRGIAL 165 (329)
T ss_pred CCCCCCcccccccccCCCCCcchhhhhcccCCCCcccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24799876654 34678999887642 1 123479999988999999999999999999999999999
Q ss_pred HcCCChhhHHHHhcCCCCCceeeeeeecCCCCC----CCCCCCccccccCCceeEEEeCCCCCceeEe-eCCceEecCCC
Q 027317 135 NLGLEEGYLKKVFYGSKGPTFGTKVSNYPPCPK----PDLIKGLRAHTDAGGIILLFQDDEVSGLQLL-KDDQWVDVPPM 209 (225)
Q Consensus 135 ~Lgl~~~~~~~~~~~~~~~~~~lr~~~Yp~~~~----~~~~~g~~~HtD~g~lTlL~q~~~~~GLqV~-~~g~W~~v~p~ 209 (225)
+||+++++|.+.+... +.+.||++|||+++. ++..+|+++|||+|+||||+|++.++||||+ ++|+|++|+|.
T Consensus 166 ~Lgl~~~~f~~~~~~~--~~~~lrl~~YP~~~~~~~~~~~~~g~~~HTD~g~lTlL~qd~~~~GLqV~~~~g~Wi~V~p~ 243 (329)
T PLN02485 166 ALGGSPDEFEGKMAGD--PFWVMRIIGYPGVSNLNGPPENDIGCGAHTDYGLLTLVNQDDDITALQVRNLSGEWIWAIPI 243 (329)
T ss_pred HcCCChHHhhhhhccC--ccceEEEEeCCCCccccCCcccCcccccccCCCeEEEEeccCCCCeeeEEcCCCcEEECCCC
Confidence 9999999998765432 456799999999975 3457899999999999999997558999998 58999999999
Q ss_pred CCcEEEEhhhHhhhcC
Q 027317 210 KHSIVINLGDQLEVIN 225 (225)
Q Consensus 210 ~g~~vVnvGD~l~~~T 225 (225)
||++|||+||+||+||
T Consensus 244 pg~~vVNiGD~L~~~T 259 (329)
T PLN02485 244 PGTFVCNIGDMLKIWS 259 (329)
T ss_pred CCcEEEEhHHHHHHHH
Confidence 9999999999999998
No 13
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1.2e-60 Score=408.08 Aligned_cols=221 Identities=30% Similarity=0.633 Sum_probs=189.8
Q ss_pred CCcEEeCCCCCC--CcHHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHHhcCCHHHHhHhhh---cCCCcccc
Q 027317 3 NFPIIDLSKLNG--DERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMV---ASKGLEAV 77 (225)
Q Consensus 3 ~iP~IDl~~l~~--~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~---~~~Gy~~~ 77 (225)
+||+|||+.+.+ ..+.+++++|++||+++|||||+||||+.++++++++.+++||+||.|+|+++.. ..+||.+-
T Consensus 44 ~IPvIDls~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~GY~~~ 123 (348)
T PLN00417 44 DIPAIDLSLLLSSSDDGREELSKLHSALSTWGVVQVMNHGITEAFLDKIYKLTKQFFALPTEEKQKCAREIGSIQGYGND 123 (348)
T ss_pred CCCeEEChhhcCCCchHHHHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHHhhcCCCCccccccc
Confidence 699999998753 2334556899999999999999999999999999999999999999999999743 24677542
Q ss_pred c--ccccCCCCccceeccccCC--CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCC
Q 027317 78 Q--SEVNDLDWESTFFLRHLPV--SNMAEIPDLEDDYRKAMKEFAVELEKVAEQLLELLCENLGLEEGYLKKVFYGSKGP 153 (225)
Q Consensus 78 ~--~~~~~~d~~e~~~~~~~~~--~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~~~~~ 153 (225)
. ......||+|.+++...|. ...|.||+.+++||+.+++|+++|.+++.+||+++|++||+++++|.+.+... .
T Consensus 124 ~~~~~~~~~d~~e~~~~~~~p~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~LGl~~~~f~~~~~~~--~ 201 (348)
T PLN00417 124 MILSDDQVLDWIDRLYLTTYPEDQRQLKFWPQVPVGFRETLHEYTMKQRLVIEKFFKAMARSLELEENCFLEMYGEN--A 201 (348)
T ss_pred cccccCCCcCccceeecccCCcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccC--c
Confidence 1 1123467888887654442 24589999889999999999999999999999999999999999999887642 2
Q ss_pred ceeeeeeecCCCCCCCCCCCccccccCCceeEEEeCCCCCceeEeeCCceEecCCCCCcEEEEhhhHhhhcC
Q 027317 154 TFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVIN 225 (225)
Q Consensus 154 ~~~lr~~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q~~~~~GLqV~~~g~W~~v~p~~g~~vVnvGD~l~~~T 225 (225)
.+.||++|||||+.++..+|+++|||+|+||||+|++.++||||+++|+|++|+|+||++|||+||+||+||
T Consensus 202 ~~~lRl~~YPp~~~~~~~~g~~~HTD~g~lTlL~qd~~v~GLQV~~~g~Wi~V~p~pg~lVVNiGD~Le~~T 273 (348)
T PLN00417 202 TMDTRFNMYPPCPRPDKVIGVKPHADGSAFTLLLPDKDVEGLQFLKDGKWYKAPIVPDTILINVGDQMEIMS 273 (348)
T ss_pred cceeeeeecCCCCCcccccCCcCccCCCceEEEEecCCCCceeEeECCeEEECCCCCCcEEEEcChHHHHHh
Confidence 356999999999988778999999999999999996459999999999999999999999999999999998
No 14
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=8.7e-61 Score=410.68 Aligned_cols=220 Identities=32% Similarity=0.652 Sum_probs=192.9
Q ss_pred CCcEEeCCCCCCC---cHHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHHhcCCHHHHhHhhh---cCCCccc
Q 027317 3 NFPIIDLSKLNGD---ERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMV---ASKGLEA 76 (225)
Q Consensus 3 ~iP~IDl~~l~~~---~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~---~~~Gy~~ 76 (225)
+||+|||+.+.+. ++.+++++|++||++||||||+||||+.++++++++.+++||+||.|+|+++.. ..+||..
T Consensus 52 ~IPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~GY~~ 131 (361)
T PLN02758 52 DIPVIDFSRLVKGDNDELFSEILKLRLACEEWGFFQVINHGIELELLEEIEKVAREFFMLPLEEKQKYPMAPGTVQGYGQ 131 (361)
T ss_pred CCCeEEchhhcCCChHHHHHHHHHHHHHHHhCeEEEEecCCCCHHHHHHHHHHHHHHhcCCHHHHHHhcccCCCccccCc
Confidence 5999999988642 235678999999999999999999999999999999999999999999999743 2468864
Q ss_pred ccc--cccCCCCccceeccccCC--CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHhcCCCC
Q 027317 77 VQS--EVNDLDWESTFFLRHLPV--SNMAEIPDLEDDYRKAMKEFAVELEKVAEQLLELLCENLGLEEGYLKKVFYGSKG 152 (225)
Q Consensus 77 ~~~--~~~~~d~~e~~~~~~~~~--~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~~~~ 152 (225)
... .....||+|.|.++..|. ..+|.||+.+++||+.+++|+++|.+++.+||++|+++||+++++|.+.+..
T Consensus 132 ~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~--- 208 (361)
T PLN02758 132 AFVFSEDQKLDWCNMFALGVEPHFIRNPKLWPTKPARFSETLEVYSREIRELCQRLLKYIAMTLGLKEDRFEEMFGE--- 208 (361)
T ss_pred ccccccccccCeeEEEEeeccCccccccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhHHHhcC---
Confidence 322 234568999998764442 3578999988999999999999999999999999999999999999998764
Q ss_pred CceeeeeeecCCCCCCCCCCCccccccCCceeEEEeCC-CCCceeEeeCCceEecCCCCCcEEEEhhhHhhhcC
Q 027317 153 PTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDD-EVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVIN 225 (225)
Q Consensus 153 ~~~~lr~~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q~~-~~~GLqV~~~g~W~~v~p~~g~~vVnvGD~l~~~T 225 (225)
+.+.||++|||+|+.++..+|+++|||+|+||||+|++ +++||||+++|+|++|+|+||++|||+||+||+||
T Consensus 209 ~~~~lR~~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~~~v~GLQV~~~g~Wi~V~p~pgalVVNiGD~L~~~S 282 (361)
T PLN02758 209 AVQAVRMNYYPPCSRPDLVLGLSPHSDGSALTVLQQGKGSCVGLQILKDNTWVPVHPVPNALVINIGDTLEVLT 282 (361)
T ss_pred ccceeeeecCCCCCCcccccCccCccCCceeEEEEeCCCCCCCeeeeeCCEEEeCCCCCCeEEEEccchhhhhc
Confidence 45679999999999888889999999999999999974 48999999999999999999999999999999998
No 15
>PTZ00273 oxidase reductase; Provisional
Probab=100.00 E-value=2.6e-60 Score=403.20 Aligned_cols=220 Identities=31% Similarity=0.580 Sum_probs=192.3
Q ss_pred CCCcEEeCCCCCCC---cHHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHHhcCCHHHHhHhhh----cCCCc
Q 027317 2 ENFPIIDLSKLNGD---ERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMV----ASKGL 74 (225)
Q Consensus 2 ~~iP~IDl~~l~~~---~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~----~~~Gy 74 (225)
++||+|||+.+.++ ++++++++|++||+++|||||+||||+.++++++++++++||+||.|+|+++.. ..+||
T Consensus 4 ~~iPvIDl~~~~~~~~~~~~~~~~~l~~A~~~~Gff~v~nhgi~~~l~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~GY 83 (320)
T PTZ00273 4 ASLPVIDVSPLFGGESAEKMRVAKQIDEACRTWGFFYIVGHPIPQERIEKVLKMAKTFFSLPMEEKLKIDIRKSRLHRGY 83 (320)
T ss_pred CCCCEEecHHhcCCChHHHHHHHHHHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccCCCCCCCCC
Confidence 46999999988632 356789999999999999999999999999999999999999999999999632 24799
Q ss_pred ccccccc----cCCCCccceeccc-cC-----------CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 027317 75 EAVQSEV----NDLDWESTFFLRH-LP-----------VSNMAEIPDLEDDYRKAMKEFAVELEKVAEQLLELLCENLGL 138 (225)
Q Consensus 75 ~~~~~~~----~~~d~~e~~~~~~-~~-----------~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl 138 (225)
.+.+.+. ...||+|.|.++. .| ...+|.||+.+++||+++++|+++|.+++..|+++||++||+
T Consensus 84 ~~~~~e~~~~~~~~d~kE~~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl 163 (320)
T PTZ00273 84 GAFGAEQLDPSKPYDYKETFDMGCHLPKDHPDVMAGKPLRGPNNHPTQVEGWMELMETHYRDMQALALVLLRALALAIGL 163 (320)
T ss_pred CCccccccCCCCCCCccceEEeeccCCcccchhhccccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 8766442 3468999998752 11 124799999889999999999999999999999999999999
Q ss_pred ChhhHHHHhcCCCCCceeeeeeecCCCCCC-CCCCCccccccCCceeEEEeCCCCCceeEee-CCceEecCCCCCcEEEE
Q 027317 139 EEGYLKKVFYGSKGPTFGTKVSNYPPCPKP-DLIKGLRAHTDAGGIILLFQDDEVSGLQLLK-DDQWVDVPPMKHSIVIN 216 (225)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~lr~~~Yp~~~~~-~~~~g~~~HtD~g~lTlL~q~~~~~GLqV~~-~g~W~~v~p~~g~~vVn 216 (225)
++++|.+.+.. +.+.+|++|||+++.+ +..+|+++|||+|+||||+|| .++||||+. +|+|++|+|.||++|||
T Consensus 164 ~~~~f~~~~~~---~~~~lrl~~YP~~~~~~~~~~g~~~HTD~g~lTlL~qd-~~~GLqV~~~~g~Wi~V~p~pg~lvVN 239 (320)
T PTZ00273 164 REDFFDSKFME---PLSVFRMKHYPALPQTKKGRTVCGEHTDYGIITLLYQD-SVGGLQVRNLSGEWMDVPPLEGSFVVN 239 (320)
T ss_pred CHHHHHHhhCC---CcceeeeeecCCCCCccccCcccccccCCCeEEEEecC-CCCceEEECCCCCEEeCCCCCCeEEEE
Confidence 99999987754 4567999999999863 457899999999999999998 699999984 89999999999999999
Q ss_pred hhhHhhhcC
Q 027317 217 LGDQLEVIN 225 (225)
Q Consensus 217 vGD~l~~~T 225 (225)
+||+||+||
T Consensus 240 vGD~l~~~T 248 (320)
T PTZ00273 240 IGDMMEMWS 248 (320)
T ss_pred HHHHHHHHH
Confidence 999999998
No 16
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=4.6e-60 Score=403.53 Aligned_cols=217 Identities=33% Similarity=0.660 Sum_probs=188.0
Q ss_pred CCcEEeCCCCCCCcHHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHHhcCCHHHHhHhhhc--C---CCcccc
Q 027317 3 NFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVA--S---KGLEAV 77 (225)
Q Consensus 3 ~iP~IDl~~l~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~--~---~Gy~~~ 77 (225)
+||+|||+.. ++++++++|.+||+++|||||+||||+.++++++++.+++||+||.|+|+++... . ++|+.+
T Consensus 37 ~iPvIDls~~---~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~~~~fF~LP~e~K~~~~~~~~~~~~~~~~~~ 113 (337)
T PLN02639 37 NVPVIDLGSP---DRAQVVQQIGDACRRYGFFQVINHGVSAELVEKMLAVAHEFFRLPVEEKMKLYSDDPTKTMRLSTSF 113 (337)
T ss_pred CCCeEECCCc---cHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHhhhhccCCCCcccccccc
Confidence 6999999963 4678999999999999999999999999999999999999999999999985321 1 233333
Q ss_pred ccc-ccCCCCccceeccccCCC-CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCce
Q 027317 78 QSE-VNDLDWESTFFLRHLPVS-NMAEIPDLEDDYRKAMKEFAVELEKVAEQLLELLCENLGLEEGYLKKVFYGSKGPTF 155 (225)
Q Consensus 78 ~~~-~~~~d~~e~~~~~~~~~~-~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~~~~~~~ 155 (225)
... ....+|+|.+.+...|.. .+|.||+.+++||+.+++|+++|.+++.+||+++|++||+++++|.+.+.. +.+
T Consensus 114 ~~~~~~~~~~~e~~~~~~~p~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~---~~~ 190 (337)
T PLN02639 114 NVRKEKVHNWRDYLRLHCYPLDKYVPEWPSNPPSFKEIVSTYCREVRELGFRLQEAISESLGLEKDYIKNVLGE---QGQ 190 (337)
T ss_pred ccccCcccCchheEEeeecCCcccchhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCC---Ccc
Confidence 221 234579998877544432 368899988999999999999999999999999999999999999987754 346
Q ss_pred eeeeeecCCCCCCCCCCCccccccCCceeEEEeCCCCCceeEeeCCceEecCCCCCcEEEEhhhHhhhcC
Q 027317 156 GTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVIN 225 (225)
Q Consensus 156 ~lr~~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q~~~~~GLqV~~~g~W~~v~p~~g~~vVnvGD~l~~~T 225 (225)
.+|++|||+++.++..+|+++|||+|+||||+||+.++||||+++|+|++|+|.||++|||+||+||+||
T Consensus 191 ~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~qd~~v~GLQV~~~g~Wi~V~p~pg~lVVNiGD~L~~~T 260 (337)
T PLN02639 191 HMAVNYYPPCPEPELTYGLPAHTDPNALTILLQDQQVAGLQVLKDGKWVAVNPHPGAFVINIGDQLQALS 260 (337)
T ss_pred EEEEEcCCCCCCcccccCCCCCcCCCceEEEEecCCcCceEeecCCeEEeccCCCCeEEEechhHHHHHh
Confidence 7999999999987778999999999999999997449999999999999999999999999999999998
No 17
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=3.6e-60 Score=403.18 Aligned_cols=219 Identities=29% Similarity=0.500 Sum_probs=187.7
Q ss_pred CCCcEEeCCCCCCCcHHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHHhcCCHHHHhHhhh--cCCCcccccc
Q 027317 2 ENFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMV--ASKGLEAVQS 79 (225)
Q Consensus 2 ~~iP~IDl~~l~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~--~~~Gy~~~~~ 79 (225)
.+||+|||+.. ++..++++|++||+++|||||+||||+.++++++++.+++||+||.|+|+++.. ..+||.+.+.
T Consensus 13 ~~iP~IDl~~~---~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~k~~~~~~~~GY~~~~~ 89 (332)
T PLN03002 13 SSLNCIDLAND---DLNHSVASLKQACLDCGFFYVINHGINEEFMDDVFEQSKKFFALPLEEKMKVLRNEKHRGYTPVLD 89 (332)
T ss_pred CCCCEEeCCch---hHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCCCcCcccc
Confidence 57999999952 456788999999999999999999999999999999999999999999999643 3589987655
Q ss_pred ccc------CCCCccceeccc-cCC---------CCCCCCCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh
Q 027317 80 EVN------DLDWESTFFLRH-LPV---------SNMAEIPDL--EDDYRKAMKEFAVELEKVAEQLLELLCENLGLEEG 141 (225)
Q Consensus 80 ~~~------~~d~~e~~~~~~-~~~---------~~~~~wP~~--~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~ 141 (225)
+.. ..||+|.|+++. .|. ..+|.||+. .++||+.+++|+++|.+|+..||++||++||++++
T Consensus 90 e~~~~~~~~~~d~kE~f~~~~~~p~~~~~~~~~~~~~n~wP~~~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~ 169 (332)
T PLN03002 90 EKLDPKNQINGDHKEGYYIGIEVPKDDPHWDKPFYGPNPWPDADVLPGWRETMEKYHQEALRVSMAIAKLLALALDLDVG 169 (332)
T ss_pred cccccccCCCCcceeeeEecccCCCCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH
Confidence 431 369999998763 221 136899974 68999999999999999999999999999999999
Q ss_pred hHHHHhcCCCCCceeeeeeecCCCCCCC-CCCCccccccCCceeEEEeCCCCCceeEeeC-----CceEecCCCCCcEEE
Q 027317 142 YLKKVFYGSKGPTFGTKVSNYPPCPKPD-LIKGLRAHTDAGGIILLFQDDEVSGLQLLKD-----DQWVDVPPMKHSIVI 215 (225)
Q Consensus 142 ~~~~~~~~~~~~~~~lr~~~Yp~~~~~~-~~~g~~~HtD~g~lTlL~q~~~~~GLqV~~~-----g~W~~v~p~~g~~vV 215 (225)
+|.+.+.... +.+.||++|||+++.++ ..+|+++|||+|+||||+|| +++||||+++ |+|++|+|+||++||
T Consensus 170 ~f~~~~~~~~-~~~~lrl~~YP~~~~~~~~~~g~~~HTD~g~lTlL~qd-~v~GLQV~~~~~~~~g~Wi~Vpp~pg~~VV 247 (332)
T PLN03002 170 YFDRTEMLGK-PIATMRLLRYQGISDPSKGIYACGAHSDFGMMTLLATD-GVMGLQICKDKNAMPQKWEYVPPIKGAFIV 247 (332)
T ss_pred HhccccccCC-CchheeeeeCCCCCCcccCccccccccCCCeEEEEeeC-CCCceEEecCCCCCCCcEEECCCCCCeEEE
Confidence 9986332222 45779999999998655 46899999999999999997 6999999863 689999999999999
Q ss_pred EhhhHhhhcC
Q 027317 216 NLGDQLEVIN 225 (225)
Q Consensus 216 nvGD~l~~~T 225 (225)
||||+||+||
T Consensus 248 NiGD~L~~wT 257 (332)
T PLN03002 248 NLGDMLERWS 257 (332)
T ss_pred EHHHHHHHHh
Confidence 9999999998
No 18
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=100.00 E-value=4.5e-60 Score=405.30 Aligned_cols=219 Identities=32% Similarity=0.621 Sum_probs=189.7
Q ss_pred CCcEEeCCCCCC--CcHHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHHhcCCHHHHhHhhh---cCCCcccc
Q 027317 3 NFPIIDLSKLNG--DERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMV---ASKGLEAV 77 (225)
Q Consensus 3 ~iP~IDl~~l~~--~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~---~~~Gy~~~ 77 (225)
.||+|||+.+.+ .+|.+++++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++.. ..+||...
T Consensus 37 ~iPvIDls~~~~~~~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~~~ 116 (358)
T PLN02515 37 EIPVISLAGIDEVGGRRGEICRKIVEACEDWGIFQVVDHGVDANLVADMTRLARDFFALPAEEKLRFDMSGGKKGGFIVS 116 (358)
T ss_pred CCCEEEChhccCCchHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHhhhCcCCCCccCcccc
Confidence 599999998853 3467889999999999999999999999999999999999999999999998643 23678532
Q ss_pred cc--cccCCCCccceeccccC--CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCC
Q 027317 78 QS--EVNDLDWESTFFLRHLP--VSNMAEIPDLEDDYRKAMKEFAVELEKVAEQLLELLCENLGLEEGYLKKVFYGSKGP 153 (225)
Q Consensus 78 ~~--~~~~~d~~e~~~~~~~~--~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~~~~~ 153 (225)
.. ..+..||+|.|.+...| ....|.||+.+++||+++++|+++|.+|+.+||++++++||+++++|.+.+.. .
T Consensus 117 ~~~~~~~~~d~kE~~~~~~~~~~~~~~n~WP~~~~~fr~~~~~y~~~~~~L~~~ll~~la~~Lgl~~~~f~~~~~~---~ 193 (358)
T PLN02515 117 SHLQGEAVQDWREIVTYFSYPVRTRDYSRWPDKPEGWRAVTEEYSEKLMGLACKLLEVLSEAMGLEKEALTKACVD---M 193 (358)
T ss_pred cccccccccCceeeeccccCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHhhcC---c
Confidence 11 12347999998654333 34568999988999999999999999999999999999999999999988754 3
Q ss_pred ceeeeeeecCCCCCCCCCCCccccccCCceeEEEeCCCCCceeEeeCC--ceEecCCCCCcEEEEhhhHhhhcC
Q 027317 154 TFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDD--QWVDVPPMKHSIVINLGDQLEVIN 225 (225)
Q Consensus 154 ~~~lr~~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q~~~~~GLqV~~~g--~W~~v~p~~g~~vVnvGD~l~~~T 225 (225)
.+.+|++|||+|+.++...|+++|||+|+||||+|| +++||||++++ +|++|+|.||++|||+||+||+||
T Consensus 194 ~~~lrl~~YP~~~~~~~~~G~~~HTD~g~lTlL~Qd-~v~GLQV~~~~~~~Wi~Vpp~pgalVVNiGD~L~~~T 266 (358)
T PLN02515 194 DQKVVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQD-QVGGLQATRDGGKTWITVQPVEGAFVVNLGDHGHYLS 266 (358)
T ss_pred cceEEEeecCCCCChhhccCCCCCCCCCeEEEEecC-CCCceEEEECCCCeEEECCCCCCeEEEEccHHHHHHh
Confidence 467899999999887788999999999999999998 69999998643 799999999999999999999998
No 19
>PLN02947 oxidoreductase
Probab=100.00 E-value=4.1e-60 Score=407.37 Aligned_cols=219 Identities=31% Similarity=0.588 Sum_probs=188.9
Q ss_pred CCcEEeCCCCCCCcHHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHHhcCCHHHHhHhhhc----CCCccccc
Q 027317 3 NFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVA----SKGLEAVQ 78 (225)
Q Consensus 3 ~iP~IDl~~l~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~----~~Gy~~~~ 78 (225)
+||+|||+.+.+.++.+++++|++||++||||||+|||||.++++++++.+++||+||.|+|+++... ..||....
T Consensus 66 ~iPvIDls~l~~~~~~~~~~~l~~Ac~~~GFF~v~nHGIp~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~gyg~~~ 145 (374)
T PLN02947 66 KLPVIDLAELRGSNRPHVLATLAAACREYGFFQVVNHGVPSEVIGGMIDVARRFFELPLEERAKYMSADMRAPVRYGTSF 145 (374)
T ss_pred CCCeEECcccCCccHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHhhhhcccCCCCeeecccc
Confidence 69999999986556788999999999999999999999999999999999999999999999996321 23553211
Q ss_pred --ccccCCCCccceeccccCCC-CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---hhhHHHHhcCCCC
Q 027317 79 --SEVNDLDWESTFFLRHLPVS-NMAEIPDLEDDYRKAMKEFAVELEKVAEQLLELLCENLGLE---EGYLKKVFYGSKG 152 (225)
Q Consensus 79 --~~~~~~d~~e~~~~~~~~~~-~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~---~~~~~~~~~~~~~ 152 (225)
......+|+|.+.+...|.. ..|.||+.+++||+.+++|+++|.+|+.+|+++|+++||++ .++|.+.+..
T Consensus 146 ~~~~~~~~~~~e~~~~~~~p~~~~~~~WP~~~~~fr~~~~~Y~~~~~~L~~~ll~~la~~Lgl~~~~~~~~~~~~~~--- 222 (374)
T PLN02947 146 NQNKDAVFCWRDFLKLVCHPLSDVLPHWPSSPADLRKVAATYAKATKRLFLELMEAILESLGIVKRGSDELLEEFEA--- 222 (374)
T ss_pred ccccccccCceeceeeecCCcccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccchHHHHHHhcC---
Confidence 11234679998876544433 36889998899999999999999999999999999999997 4566665543
Q ss_pred CceeeeeeecCCCCCCCCCCCccccccCCceeEEEeCCCCCceeEeeCCceEecCCCCCcEEEEhhhHhhhcC
Q 027317 153 PTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVIN 225 (225)
Q Consensus 153 ~~~~lr~~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q~~~~~GLqV~~~g~W~~v~p~~g~~vVnvGD~l~~~T 225 (225)
..+.+|++|||||+.++..+|+++|||+|+||||+|+ .++||||+++|+|++|+|+||++||||||+||+||
T Consensus 223 ~~~~lrln~YPp~p~~~~~~G~~~HTD~g~lTlL~Qd-~v~GLQV~~~g~Wi~V~p~pga~VVNvGD~Lq~~S 294 (374)
T PLN02947 223 GSQMMVVNCYPACPEPELTLGMPPHSDYGFLTLLLQD-EVEGLQIMHAGRWVTVEPIPGSFVVNVGDHLEIFS 294 (374)
T ss_pred cceeeeeecCCCCCCcccccCCCCccCCCceEEEEec-CCCCeeEeECCEEEeCCCCCCeEEEEeCceeeeee
Confidence 3467999999999998888999999999999999998 69999999999999999999999999999999998
No 20
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=100.00 E-value=2.9e-59 Score=394.50 Aligned_cols=221 Identities=40% Similarity=0.777 Sum_probs=193.9
Q ss_pred CCcEEeCCCCCCC--cHHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHHhcCCHHHHhHhhhcC---CCcccc
Q 027317 3 NFPIIDLSKLNGD--ERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVAS---KGLEAV 77 (225)
Q Consensus 3 ~iP~IDl~~l~~~--~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~---~Gy~~~ 77 (225)
+||+|||+.+... .+.+++++|++||++||||+|+|||||.++++++++.+++||+||.|+|.++.... .||...
T Consensus 17 ~iPvIDls~~~~~~~~~~~~~~~i~~Ace~wGfFqviNHGI~~~l~~~~~~~~~~fF~lP~eeK~k~~~~~~~~~gY~~~ 96 (322)
T KOG0143|consen 17 DIPVIDLSCLDSDDPGREEVVEKLREACEEWGFFQVINHGISLELLDKVKEASKEFFELPLEEKLKVASEPGKYRGYGTS 96 (322)
T ss_pred CcCeEECCCCCCcchhHHHHHHHHHHHHHHCCeeEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHHhhccCCCCccccccc
Confidence 5999999987643 37888999999999999999999999999999999999999999999999975433 566432
Q ss_pred c--ccccCCCCccceeccccCC--CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCC
Q 027317 78 Q--SEVNDLDWESTFFLRHLPV--SNMAEIPDLEDDYRKAMKEFAVELEKVAEQLLELLCENLGLEEGYLKKVFYGSKGP 153 (225)
Q Consensus 78 ~--~~~~~~d~~e~~~~~~~~~--~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~~~~~ 153 (225)
. ......+|.+.+.+...|. ...+.||+.++.||+++++|.+++.+++..|+++++++||++.+++.+.+... .
T Consensus 97 ~~~~~~~~~~w~d~~~~~~~p~~~~~~~~wp~~p~~~re~~~eY~~~~~~L~~~l~~~l~eslgl~~~~~~~~~~~~--~ 174 (322)
T KOG0143|consen 97 FILSPLKELDWRDYLTLLSAPESSFDPNLWPEGPPEFRETMEEYAKEVMELSEKLLRLLSESLGLEPEYLEKLFGET--G 174 (322)
T ss_pred ccccccccccchhheeeeccCccccCcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHhhCCc--c
Confidence 2 2234678999887765553 46789999999999999999999999999999999999999987677766543 3
Q ss_pred ceeeeeeecCCCCCCCCCCCccccccCCceeEEEeCCCCCceeEe-eCCceEecCCCCCcEEEEhhhHhhhcC
Q 027317 154 TFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLL-KDDQWVDVPPMKHSIVINLGDQLEVIN 225 (225)
Q Consensus 154 ~~~lr~~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q~~~~~GLqV~-~~g~W~~v~p~~g~~vVnvGD~l~~~T 225 (225)
...||++||||||.++...|+++|||.|+||+|.||+.++||||+ ++|+|++|+|.||++|||+||+||+||
T Consensus 175 ~~~~r~n~Yp~cp~pe~~lGl~~HtD~~~lTiLlqd~~V~GLQv~~~dg~Wi~V~P~p~a~vVNiGD~l~~lS 247 (322)
T KOG0143|consen 175 GQVMRLNYYPPCPEPELTLGLGAHTDKSFLTILLQDDDVGGLQVFTKDGKWIDVPPIPGAFVVNIGDMLQILS 247 (322)
T ss_pred ceEEEEeecCCCcCccccccccCccCcCceEEEEccCCcCceEEEecCCeEEECCCCCCCEEEEcccHHhHhh
Confidence 457999999999999999999999999999999998679999999 599999999999999999999999997
No 21
>PLN02704 flavonol synthase
Probab=100.00 E-value=5.6e-59 Score=396.56 Aligned_cols=219 Identities=34% Similarity=0.625 Sum_probs=187.2
Q ss_pred CCCcEEeCCCCCCCcHHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHHhcCCHHHHhHhhhc-----CCCccc
Q 027317 2 ENFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVA-----SKGLEA 76 (225)
Q Consensus 2 ~~iP~IDl~~l~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~-----~~Gy~~ 76 (225)
.+||+|||+.. ++.+++++|.+||+++|||||+||||+.++++++++.+++||+||.|+|+++... .+||..
T Consensus 41 ~~iPvIDls~~---~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~~~~Gy~~ 117 (335)
T PLN02704 41 PQVPTIDLSDP---DEEKLTRLIAEASKEWGMFQIVNHGIPSEVISKLQKVGKEFFELPQEEKEVYAKPPDSKSIEGYGT 117 (335)
T ss_pred CCCCeEECCCc---cHHHHHHHHHHHHHHcCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHHhhccCCCcccccccc
Confidence 35999999964 3467889999999999999999999999999999999999999999999986432 257753
Q ss_pred cccc--ccCCCCccceeccccCC--CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHhcCCCC
Q 027317 77 VQSE--VNDLDWESTFFLRHLPV--SNMAEIPDLEDDYRKAMKEFAVELEKVAEQLLELLCENLGLEEGYLKKVFYGSKG 152 (225)
Q Consensus 77 ~~~~--~~~~d~~e~~~~~~~~~--~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~~~~ 152 (225)
...+ .+..+|+|.++....|. ...|.||+.+++||+.+++|+++|.+++.+||++++++||+++++|.+.+....
T Consensus 118 ~~~~~~~~~~~~~d~~~~~~~p~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~- 196 (335)
T PLN02704 118 KLQKEPEGKKAWVDHLFHRIWPPSAINYQFWPKNPPSYREVNEEYAKYLRGVADKLFKTLSLGLGLEEDELKEAVGGEE- 196 (335)
T ss_pred cccccccCcccceeeeEeeecCCcccchhhCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCc-
Confidence 3221 23456777765432232 245789988899999999999999999999999999999999999998775432
Q ss_pred CceeeeeeecCCCCCCCCCCCccccccCCceeEEEeCCCCCceeEeeCCceEecCCCCCcEEEEhhhHhhhcC
Q 027317 153 PTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVIN 225 (225)
Q Consensus 153 ~~~~lr~~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q~~~~~GLqV~~~g~W~~v~p~~g~~vVnvGD~l~~~T 225 (225)
..+.+|++||||++.++..+|+++|||+|+||||+|+ .++||||+++|+|++|+|.||++|||+||+||+||
T Consensus 197 ~~~~lrl~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd-~v~GLQV~~~g~Wi~V~p~pg~lvVNvGD~L~~~T 268 (335)
T PLN02704 197 LEYLLKINYYPPCPRPDLALGVVAHTDMSAITILVPN-EVQGLQVFRDDHWFDVKYIPNALVIHIGDQIEILS 268 (335)
T ss_pred hhhhhhhhcCCCCCCcccccCccCccCCcceEEEecC-CCCceeEeECCEEEeCCCCCCeEEEEechHHHHHh
Confidence 2357999999999988788999999999999999998 69999999999999999999999999999999998
No 22
>PLN02904 oxidoreductase
Probab=100.00 E-value=1.1e-58 Score=396.78 Aligned_cols=218 Identities=27% Similarity=0.523 Sum_probs=185.3
Q ss_pred CCcEEeCCCCCC-CcHHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHHhcCCHHHHhHhhhc-CCCccccccc
Q 027317 3 NFPIIDLSKLNG-DERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVA-SKGLEAVQSE 80 (225)
Q Consensus 3 ~iP~IDl~~l~~-~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~-~~Gy~~~~~~ 80 (225)
.||+|||+.+.+ ..|..++++|++||++||||||+||||+.++++++++.+++||+||.|+|+++... ..+|.+++..
T Consensus 51 ~iPvIDls~~~~~~~r~~~~~~l~~Ac~~~GFf~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~~g~~ 130 (357)
T PLN02904 51 TLPVIDLSLLHDPLLRSCVIHEIEMACKGFGFFQVINHGIPSSVVKDALDAATRFFDLPVDEKMLLVSDNVHEPVRYGTS 130 (357)
T ss_pred CCCEEECcccCCchhHHHHHHHHHHHHHHCceEEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHhhhcccCCCCccccccc
Confidence 599999998863 34677899999999999999999999999999999999999999999999996432 2233323221
Q ss_pred -----ccCCCCccceeccccCC-CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCc
Q 027317 81 -----VNDLDWESTFFLRHLPV-SNMAEIPDLEDDYRKAMKEFAVELEKVAEQLLELLCENLGLEEGYLKKVFYGSKGPT 154 (225)
Q Consensus 81 -----~~~~d~~e~~~~~~~~~-~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~~~~~~ 154 (225)
....+|++.+.....|. ..+|.||+.+++||+.+++|+++|.+|+.+||++||++||+++++|.+.+.. ..
T Consensus 131 ~~~~~~~~~~~~d~~~~~~~p~~~~~n~WP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~---~~ 207 (357)
T PLN02904 131 LNHSTDRVHYWRDFIKHYSHPLSKWINLWPSNPPCYKEKVGKYAEATHVLHKQLIEAISESLGLEKNYLQEEIEE---GS 207 (357)
T ss_pred ccccCCCCCCceEEeeeccCCcccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcC---cc
Confidence 12336777664433332 2368999988999999999999999999999999999999999999987754 34
Q ss_pred eeeeeeecCCCCCCCCCCCccccccCCceeEEEeCCCCCceeEee-CCceEecCCCCCcEEEEhhhHhhhcC
Q 027317 155 FGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLK-DDQWVDVPPMKHSIVINLGDQLEVIN 225 (225)
Q Consensus 155 ~~lr~~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q~~~~~GLqV~~-~g~W~~v~p~~g~~vVnvGD~l~~~T 225 (225)
+.||++|||||+.++..+|+++|||+|+||||+|+ .+||||+. +|+|++|+|+||++|||+||+||+||
T Consensus 208 ~~lrl~~YPp~p~~~~~~g~~~HtD~g~lTlL~qd--~~GLQV~~~~g~Wi~V~p~pgalVVNiGD~Le~~T 277 (357)
T PLN02904 208 QVMAVNCYPACPEPEIALGMPPHSDFGSLTILLQS--SQGLQIMDCNKNWVCVPYIEGALIVQLGDQVEVMS 277 (357)
T ss_pred cEEEeeecCCCCCcccccCCcCccCCCceEEEecC--CCeeeEEeCCCCEEECCCCCCeEEEEccHHHHHHh
Confidence 67999999999988788999999999999999996 48999996 69999999999999999999999998
No 23
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=100.00 E-value=3.1e-58 Score=390.51 Aligned_cols=215 Identities=27% Similarity=0.465 Sum_probs=181.7
Q ss_pred CCcEEeCCCCCCCcHHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHHhcCCHHHHhHhhh-cCCCccccc-cc
Q 027317 3 NFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMV-ASKGLEAVQ-SE 80 (225)
Q Consensus 3 ~iP~IDl~~l~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~-~~~Gy~~~~-~~ 80 (225)
.||+|||++. +..++|++||++||||||+||||+.++++++++.+++||+||.|+|+++.. ..+||.... ..
T Consensus 26 ~iPvIDls~~------~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~~~~~Gy~~~~~~~ 99 (335)
T PLN02156 26 LIPVIDLTDS------DAKTQIVKACEEFGFFKVINHGVRPDLLTQLEQEAIGFFALPHSLKDKAGPPDPFGYGTKRIGP 99 (335)
T ss_pred CCCcccCCCh------HHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhcCCCCCcccCccccCC
Confidence 4999999842 346789999999999999999999999999999999999999999999643 335774321 11
Q ss_pred ccCCCCccceeccccCCC----CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hhhHHHHhcCCCCCce
Q 027317 81 VNDLDWESTFFLRHLPVS----NMAEIPDLEDDYRKAMKEFAVELEKVAEQLLELLCENLGLE-EGYLKKVFYGSKGPTF 155 (225)
Q Consensus 81 ~~~~d~~e~~~~~~~~~~----~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~-~~~~~~~~~~~~~~~~ 155 (225)
....+|+|.+.+...+.. .+|.||+.+++||+.+++|+++|.+|+.+|+++||++||++ +++|.+.+.... +.+
T Consensus 100 ~~~~~~~e~~~~~~~~~~~~~~~~~~wp~~p~~fr~~~~~Y~~~~~~L~~~ll~~la~~LGl~~~~~f~~~~~~~~-~~~ 178 (335)
T PLN02156 100 NGDVGWLEYILLNANLCLESHKTTAVFRHTPAIFREAVEEYMKEMKRMSSKVLEMVEEELKIEPKEKLSKLVKVKE-SDS 178 (335)
T ss_pred CCCCCceeeEeeecCCccccccchhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCcHHHHHHHhcCCC-ccc
Confidence 234689999877543321 35789988899999999999999999999999999999997 478988775432 346
Q ss_pred eeeeeecCCCCCC--CCCCCccccccCCceeEEEeCCCCCceeEe-eCCceEecCCCCCcEEEEhhhHhhhcC
Q 027317 156 GTKVSNYPPCPKP--DLIKGLRAHTDAGGIILLFQDDEVSGLQLL-KDDQWVDVPPMKHSIVINLGDQLEVIN 225 (225)
Q Consensus 156 ~lr~~~Yp~~~~~--~~~~g~~~HtD~g~lTlL~q~~~~~GLqV~-~~g~W~~v~p~~g~~vVnvGD~l~~~T 225 (225)
.||++|||+|+.. +..+|+++|||+|+||||+|| +++||||+ ++|+|++|+|.||++|||+||+||+||
T Consensus 179 ~lRl~~YP~~~~~~~~~~~g~~~HTD~g~lTlL~Qd-~v~GLQV~~~~g~Wi~Vpp~pga~VVNiGD~l~~wT 250 (335)
T PLN02156 179 CLRMNHYPEKEETPEKVEIGFGEHTDPQLISLLRSN-DTAGLQICVKDGTWVDVPPDHSSFFVLVGDTLQVMT 250 (335)
T ss_pred eEeEEeCCCCCCCccccccCCCCccCCCceEEEEeC-CCCceEEEeCCCCEEEccCCCCcEEEEhHHHHHHHh
Confidence 7999999999853 246899999999999999998 69999998 689999999999999999999999998
No 24
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=2.6e-58 Score=391.83 Aligned_cols=212 Identities=28% Similarity=0.558 Sum_probs=178.2
Q ss_pred CCcEEeCCCCCCCcHHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHHhcCCHHHHhHhh--hcCCC----ccc
Q 027317 3 NFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQM--VASKG----LEA 76 (225)
Q Consensus 3 ~iP~IDl~~l~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~--~~~~G----y~~ 76 (225)
+||+|||+.+ .+++|++||+++|||||+|||||.++++++++.+++||+||.|+|+++. ....| |.+
T Consensus 38 ~IPvIDls~~-------~~~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~s~~FF~LP~eeK~k~~~~~~~~~~~~g~~~ 110 (341)
T PLN02984 38 DIPVIDMECL-------DMEKLREACKDWGIFRLENHGIPLTLMSQLKEISESLLSLPFESKRELFGVNSPLSYFWGTPA 110 (341)
T ss_pred CCCeEeCcHH-------HHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhcccCCCCccccCccc
Confidence 4999999865 2479999999999999999999999999999999999999999999963 22222 221
Q ss_pred cccc---------ccCCCCccceeccccCCCCCCCC---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--hhh
Q 027317 77 VQSE---------VNDLDWESTFFLRHLPVSNMAEI---PDLEDDYRKAMKEFAVELEKVAEQLLELLCENLGLE--EGY 142 (225)
Q Consensus 77 ~~~~---------~~~~d~~e~~~~~~~~~~~~~~w---P~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~--~~~ 142 (225)
+... ....||+|.|.++..+....+.| |+..++||+++++|+++|.+|+..||++||++||++ +++
T Consensus 111 ~~~~~~~~~~~~~~~~~D~kE~f~~~~~~~~~~~~~p~~~~~~p~fr~~~~~y~~~~~~La~~ll~~lA~~Lgl~~~~~~ 190 (341)
T PLN02984 111 LTPSGKALSRGPQESNVNWVEGFNIPLSSLSLLQTLSCSDPKLESFRVLMEEYGKHLTRIAVTLFEAIAKTLSLELSGDQ 190 (341)
T ss_pred ccccccccccccccCCCCeeeEEeCcCCchhhhhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhH
Confidence 1111 12469999998763222111223 234589999999999999999999999999999999 999
Q ss_pred HHHHhcCCCCCceeeeeeecCCCCCCCCCCCccccccCCceeEEEeCCCCCceeEeeCCceEecCCCCCcEEEEhhhHhh
Q 027317 143 LKKVFYGSKGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLE 222 (225)
Q Consensus 143 ~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q~~~~~GLqV~~~g~W~~v~p~~g~~vVnvGD~l~ 222 (225)
|.+.+.. +.+.||++|||||+.++..+|+++|||+|+||||+|+ +++||||+++|+|++|+|+||++|||+||+||
T Consensus 191 f~~~~~~---~~~~lRl~~YPp~~~~~~~~g~~aHTD~g~lTlL~Qd-~v~GLQV~~~g~Wv~V~p~pgalVVNiGD~Le 266 (341)
T PLN02984 191 KMSYLSE---STGVIRVYRYPQCSNEAEAPGMEVHTDSSVISILNQD-EVGGLEVMKDGEWFNVKPIANTLVVNLGDMMQ 266 (341)
T ss_pred HHHHhcC---ccceEEEEeCCCCCCcccccCccCccCCCceEEEEeC-CCCCeeEeeCCceEECCCCCCeEEEECChhhh
Confidence 9888754 3467999999999987778899999999999999998 69999999999999999999999999999999
Q ss_pred hcC
Q 027317 223 VIN 225 (225)
Q Consensus 223 ~~T 225 (225)
+||
T Consensus 267 ~wT 269 (341)
T PLN02984 267 VIS 269 (341)
T ss_pred hhc
Confidence 998
No 25
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=100.00 E-value=6.2e-57 Score=378.67 Aligned_cols=209 Identities=25% Similarity=0.465 Sum_probs=176.5
Q ss_pred CCCcEEeCCCCCCCcHHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHHhcCCHHHHhHhh--hcCCCcccccc
Q 027317 2 ENFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQM--VASKGLEAVQS 79 (225)
Q Consensus 2 ~~iP~IDl~~l~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~--~~~~Gy~~~~~ 79 (225)
..||+|||+.+. +.+++|++||+++|||||+||||+.++++++++.+++||+||.|+|+++. ...+||.+.+.
T Consensus 4 ~~iPvIDls~~~-----~~~~~l~~Ac~~~GfF~l~nHGi~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~GY~~~~~ 78 (300)
T PLN02365 4 VNIPTIDLEEFP-----GQIEKLREACERWGCFRVVNHGVSLSLMAEMKKVVRSLFDLPDEVKRRNTDVILGSGYMAPSE 78 (300)
T ss_pred CCCCEEEChhhH-----HHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHhhccCCCCCCCCCCcCC
Confidence 359999999872 23589999999999999999999999999999999999999999999853 23578876543
Q ss_pred cccCCCCccceecccc-CCCCCCCCC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChhhHHHHhcCCCCCc
Q 027317 80 EVNDLDWESTFFLRHL-PVSNMAEIP---DLEDDYRKAMKEFAVELEKVAEQLLELLCENLGL-EEGYLKKVFYGSKGPT 154 (225)
Q Consensus 80 ~~~~~d~~e~~~~~~~-~~~~~~~wP---~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl-~~~~~~~~~~~~~~~~ 154 (225)
..+++|.+.+... .....+.|| +.+++||+.+++|+++|++|+.+|+++|+++||+ ++++|.+. .
T Consensus 79 ---~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~f~~~-------~ 148 (300)
T PLN02365 79 ---VNPLYEALGLYDMASPQAVDTFCSQLDASPHQRETIKKYAKAIHDLAMDLARKLAESLGLVEGDFFQGW-------P 148 (300)
T ss_pred ---CCCchhheecccccCchhhhhccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHhhc-------c
Confidence 2367888765421 111223444 3457899999999999999999999999999999 88888762 2
Q ss_pred eeeeeeecCCCCCCCCCCCccccccCCceeEEEeCCCCCceeEee--CCceEecCCCCCcEEEEhhhHhhhcC
Q 027317 155 FGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLK--DDQWVDVPPMKHSIVINLGDQLEVIN 225 (225)
Q Consensus 155 ~~lr~~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q~~~~~GLqV~~--~g~W~~v~p~~g~~vVnvGD~l~~~T 225 (225)
+.+|++|||+++.++...|+++|||+|+||||+||+.++||||++ +|+|++|+|+||++|||+||+||+||
T Consensus 149 ~~lr~~~YP~~p~~~~~~g~~~HtD~g~lTlL~qd~~~~GLqV~~~~~g~Wi~V~p~pga~vVNiGD~l~~~T 221 (300)
T PLN02365 149 SQFRINKYNFTPETVGSSGVQIHTDSGFLTILQDDENVGGLEVMDPSSGEFVPVDPLPGTLLVNLGDVATAWS 221 (300)
T ss_pred cceeeeecCCCCCccccccccCccCCCceEEEecCCCcCceEEEECCCCeEEecCCCCCeEEEEhhHHHHHHh
Confidence 569999999998877788999999999999999973489999986 58999999999999999999999998
No 26
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=4.2e-46 Score=306.58 Aligned_cols=172 Identities=35% Similarity=0.641 Sum_probs=147.9
Q ss_pred HHHHHHHhc-CCHHHHhHhhhc-----CCCcccccc----cccCCCCccceeccccCC--CCCCCCCCCcHHHHHHHHHH
Q 027317 50 QRLTKEHYG-KCMDQRFKQMVA-----SKGLEAVQS----EVNDLDWESTFFLRHLPV--SNMAEIPDLEDDYRKAMKEF 117 (225)
Q Consensus 50 ~~~~~~fF~-lp~e~K~~~~~~-----~~Gy~~~~~----~~~~~d~~e~~~~~~~~~--~~~~~wP~~~~~f~~~~~~y 117 (225)
.+.+++||+ ||.|+|+++... .+||..... .....||+|.|.+...|. ..+|.||+.+++||+.+++|
T Consensus 2 ~~~~~~FF~~LP~eeK~~~~~~~~~~~~~GY~~~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~n~wP~~~~~f~~~~~~y 81 (262)
T PLN03001 2 RSLGLSFFKDSPMEEKLRYACDPGSAASEGYGSRMLLGAKDDTVLDWRDFFDHHTFPLSRRNPSHWPDFPPDYREVVGEY 81 (262)
T ss_pred hHHHHHHHhhCCHHHHHHhhcCCCCCCccccccccccccCCCCccCchheeEeeecCccccchhhCCCCcHHHHHHHHHH
Confidence 467899997 999999996432 368843222 122459999998764442 34689999889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCceeeeeeecCCCCCCCCCCCccccccCCceeEEEeCCCCCceeE
Q 027317 118 AVELEKVAEQLLELLCENLGLEEGYLKKVFYGSKGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQL 197 (225)
Q Consensus 118 ~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q~~~~~GLqV 197 (225)
+++|.+|+.+|+++++++||+++++|.+.+.. ..+.+|++|||||+.++..+|+++|||+|+||||+|| .++||||
T Consensus 82 ~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~---~~~~lrl~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd-~v~GLqV 157 (262)
T PLN03001 82 GDCMKALAQKLLAFISESLGLPCSCIEDAVGD---FYQNITVSYYPPCPQPELTLGLQSHSDFGAITLLIQD-DVEGLQL 157 (262)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcC---cchhheeecCCCCCCcccccCCcCCcCCCeeEEEEeC-CCCceEE
Confidence 99999999999999999999999999987754 3456999999999988888999999999999999997 6999999
Q ss_pred eeCCceEecCCCCCcEEEEhhhHhhhcC
Q 027317 198 LKDDQWVDVPPMKHSIVINLGDQLEVIN 225 (225)
Q Consensus 198 ~~~g~W~~v~p~~g~~vVnvGD~l~~~T 225 (225)
+++|+|++|+|.||++||||||+||+||
T Consensus 158 ~~~g~Wi~V~p~p~a~vVNiGD~l~~~t 185 (262)
T PLN03001 158 LKDAEWLMVPPISDAILIIIADQTEIIT 185 (262)
T ss_pred eeCCeEEECCCCCCcEEEEccHHHHHHh
Confidence 9999999999999999999999999998
No 27
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=99.93 E-value=4.9e-26 Score=165.92 Aligned_cols=101 Identities=36% Similarity=0.647 Sum_probs=83.2
Q ss_pred CcEEeCCCCCCCcHHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHHhcCCHHHHhHhhh--cCCCcccccccc
Q 027317 4 FPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMV--ASKGLEAVQSEV 81 (225)
Q Consensus 4 iP~IDl~~l~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~--~~~Gy~~~~~~~ 81 (225)
||||||+. ...+|.+++++|.+||+++|||||+||||+.++++++++.+++||+||.|+|+++.. ..+||.+.+.+.
T Consensus 1 iPvIDls~-~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~~~~Gy~~~~~~~ 79 (116)
T PF14226_consen 1 IPVIDLSP-DPADREEVAEQLRDACEEWGFFYLVNHGIPQELIDRVFAAAREFFALPLEEKQKYARSPSYRGYSPPGSES 79 (116)
T ss_dssp --EEEHGG-CHHHHHHHHHHHHHHHHHTSEEEEESSSSSHHHHHHHHHHHHHHHCSHHHHHHHHBCCTTCSEEEESEEEC
T ss_pred CCeEECCC-CCccHHHHHHHHHHHHHhCCEEEEecccccchhhHHHHHHHHHHHHhhHHHHHHhcCCCCCcccccCCccc
Confidence 89999997 446688999999999999999999999999999999999999999999999999843 358998876654
Q ss_pred c---CCCCccceecccc-C--------CCCCCCCCC
Q 027317 82 N---DLDWESTFFLRHL-P--------VSNMAEIPD 105 (225)
Q Consensus 82 ~---~~d~~e~~~~~~~-~--------~~~~~~wP~ 105 (225)
. ..||+|+|+++.. + ...+|.||+
T Consensus 80 ~~~~~~d~~E~~~~~~~~~~~~p~~~~~~~~n~WP~ 115 (116)
T PF14226_consen 80 TDGGKPDWKESFNIGPDLPEDDPAYPPLYGPNIWPD 115 (116)
T ss_dssp CTTCCCCSEEEEEEECC-STTCHHTGCTS-GGGS-T
T ss_pred cCCCCCCceEEeEEECCCCccccccccccCCCCCCC
Confidence 2 6799999988653 2 246789996
No 28
>PLN03176 flavanone-3-hydroxylase; Provisional
Probab=99.82 E-value=5.5e-20 Score=134.18 Aligned_cols=68 Identities=25% Similarity=0.667 Sum_probs=61.6
Q ss_pred CCcEEeCCCCCC--CcHHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHHhcCCHHHHhHhhhc
Q 027317 3 NFPIIDLSKLNG--DERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVA 70 (225)
Q Consensus 3 ~iP~IDl~~l~~--~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~ 70 (225)
+||+|||+.+.+ .++.+++++|++||++||||||+||||+.++++++++.+++||+||.++|+++...
T Consensus 37 ~iPvIDls~~~~~~~~~~~~~~~L~~A~~~~GFf~l~nhGi~~elid~~~~~~~~FF~LP~e~K~k~~~~ 106 (120)
T PLN03176 37 EIPVISIAGIDDGGEKRAEICNKIVEACEEWGVFQIVDHGVDAKLVSEMTTLAKEFFALPPEEKLRFDMS 106 (120)
T ss_pred CCCeEECccccCCchHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHhcccC
Confidence 699999999863 23667899999999999999999999999999999999999999999999997543
No 29
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=99.69 E-value=3.5e-17 Score=115.58 Aligned_cols=67 Identities=45% Similarity=0.866 Sum_probs=55.3
Q ss_pred eeeeeeecCCCCCCCCCCCccccccC--CceeEEEeCCCCCceeEeeCCceEecCCCCCcEEEEhhhHhhhcC
Q 027317 155 FGTKVSNYPPCPKPDLIKGLRAHTDA--GGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVIN 225 (225)
Q Consensus 155 ~~lr~~~Yp~~~~~~~~~g~~~HtD~--g~lTlL~q~~~~~GLqV~~~g~W~~v~p~~g~~vVnvGD~l~~~T 225 (225)
+.+|+++||+ ++...++++|+|. +++|+|+|+ .++||||..+++|+.|++.++.++||+||+|++||
T Consensus 2 ~~~~~~~Y~~---~~~~~~~~~H~D~~~~~~Til~~~-~~~gL~~~~~~~~~~v~~~~~~~~v~~G~~l~~~t 70 (98)
T PF03171_consen 2 SQLRLNRYPP---PENGVGIGPHTDDEDGLLTILFQD-EVGGLQVRDDGEWVDVPPPPGGFIVNFGDALEILT 70 (98)
T ss_dssp -EEEEEEE-S---CCGCEEEEEEEES--SSEEEEEET-STS-EEEEETTEEEE----TTCEEEEEBHHHHHHT
T ss_pred CEEEEEECCC---cccCCceeCCCcCCCCeEEEEecc-cchheeccccccccCccCccceeeeeceeeeeccc
Confidence 3589999998 4556789999999 999999996 69999999999999999999999999999999987
No 30
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=91.10 E-value=1.3 Score=34.19 Aligned_cols=80 Identities=25% Similarity=0.260 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHhcCCCCCceeeeeeecCCCCCCCCCCCccccccCC--------ceeEEEe--CCCCC
Q 027317 124 VAEQLLELLCENLGLEEGYLKKVFYGSKGPTFGTKVSNYPPCPKPDLIKGLRAHTDAG--------GIILLFQ--DDEVS 193 (225)
Q Consensus 124 l~~~ll~~l~~~Lgl~~~~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~g~~~HtD~g--------~lTlL~q--~~~~~ 193 (225)
+...|.+.++..++++... .. ....+++.+|.+- ....+|.|.. .+|+++. +...|
T Consensus 60 ~~~~l~~~i~~~~~~~~~~----~~----~~~~~~~~~Y~~g------~~~~~H~D~~~~~~~~~r~~T~~~yLn~~~~G 125 (178)
T smart00702 60 VIERIRQRLADFLGLLRGL----PL----SAEDAQVARYGPG------GHYGPHVDNFEDDENGDRIATFLLYLNDVEEG 125 (178)
T ss_pred HHHHHHHHHHHHHCCCchh----hc----cCcceEEEEECCC------CcccCcCCCCCCCCCCCeEEEEEEEeccCCcC
Confidence 4445556666666664220 11 1234789999862 2367899966 5888774 32344
Q ss_pred c-eeEeeCC--ceEecCCCCCcEEEEh
Q 027317 194 G-LQLLKDD--QWVDVPPMKHSIVINL 217 (225)
Q Consensus 194 G-LqV~~~g--~W~~v~p~~g~~vVnv 217 (225)
| |.+...+ .-..|.|.+|.+||.-
T Consensus 126 G~~~f~~~~~~~~~~v~P~~G~~v~f~ 152 (178)
T smart00702 126 GELVFPGLGLMVCATVKPKKGDLLFFP 152 (178)
T ss_pred ceEEecCCCCccceEEeCCCCcEEEEe
Confidence 4 6665433 2568999999988854
No 31
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=85.57 E-value=0.54 Score=32.45 Aligned_cols=56 Identities=27% Similarity=0.359 Sum_probs=35.7
Q ss_pred eeeeecCCCCCCCCCCCccccccC-----CceeEEEeCC-C-----CCceeEee----CCceEecC-----CCCCcEEEE
Q 027317 157 TKVSNYPPCPKPDLIKGLRAHTDA-----GGIILLFQDD-E-----VSGLQLLK----DDQWVDVP-----PMKHSIVIN 216 (225)
Q Consensus 157 lr~~~Yp~~~~~~~~~g~~~HtD~-----g~lTlL~q~~-~-----~~GLqV~~----~g~W~~v~-----p~~g~~vVn 216 (225)
+++++|++- ..+.+|+|. ..+|+|+.-+ . .|.|++.. ++....++ |.+|.+|+.
T Consensus 1 ~~~~~y~~G------~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F 74 (100)
T PF13640_consen 1 MQLNRYPPG------GFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIF 74 (100)
T ss_dssp -EEEEEETT------EEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEE
T ss_pred CEEEEECcC------CEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEE
Confidence 467777542 246899998 5788885422 2 25578774 35566666 999999988
Q ss_pred hh
Q 027317 217 LG 218 (225)
Q Consensus 217 vG 218 (225)
-+
T Consensus 75 ~~ 76 (100)
T PF13640_consen 75 PS 76 (100)
T ss_dssp ES
T ss_pred eC
Confidence 77
No 32
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=81.43 E-value=1.6 Score=38.45 Aligned_cols=53 Identities=15% Similarity=0.125 Sum_probs=37.0
Q ss_pred CCCcEEeCCCCCCCcHHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHHhc
Q 027317 2 ENFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYG 58 (225)
Q Consensus 2 ~~iP~IDl~~l~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~ 58 (225)
+.||.||++++... ...++..+..++.|++.|.|. ||.+...+..+..++|.+
T Consensus 48 ~~IP~i~f~di~~~---~~~~~~~~~ir~rG~~VIR~V-vp~~ea~~w~~e~~~Y~~ 100 (416)
T PF07350_consen 48 SIIPEIDFADIENG---GVSEEFLAEIRRRGCVVIRGV-VPREEALAWKQELKEYLK 100 (416)
T ss_dssp -SS-EEEHHHHHCT------HHHHHHHHHHSEEEECTS-S-HHHHHHHHHHHHHHHH
T ss_pred CCCceeeHHHHhCC---CCCHHHHHHHHhcCEEEEeCC-CCHHHHHHHHHHHHHHHH
Confidence 35999999988532 244778889999999988776 888887777776666643
No 33
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=78.07 E-value=11 Score=32.05 Aligned_cols=53 Identities=17% Similarity=0.212 Sum_probs=32.6
Q ss_pred eeeeecCCCCCCCCCCCccccccCC------------ceeEEEe--CCCCCceeEeeCCc-----------------eEe
Q 027317 157 TKVSNYPPCPKPDLIKGLRAHTDAG------------GIILLFQ--DDEVSGLQLLKDDQ-----------------WVD 205 (225)
Q Consensus 157 lr~~~Yp~~~~~~~~~g~~~HtD~g------------~lTlL~q--~~~~~GLqV~~~g~-----------------W~~ 205 (225)
|++++|-+-. -..+|.|+- +.|+|+- |...||=-+..+.+ =+.
T Consensus 134 lQVlrY~~Gq------~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~~~~~~~~~~~~~s~c~~~gl~ 207 (310)
T PLN00052 134 IQILRYEHGQ------KYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEGWENQPKDDTFSECAHKGLA 207 (310)
T ss_pred eEEEecCCCC------CCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCcccccccccccchhhhhcCCeE
Confidence 7888886532 146777743 5677764 33345544443321 178
Q ss_pred cCCCCCcEEE
Q 027317 206 VPPMKHSIVI 215 (225)
Q Consensus 206 v~p~~g~~vV 215 (225)
|+|..|..|+
T Consensus 208 VkPkkG~ALl 217 (310)
T PLN00052 208 VKPVKGDAVL 217 (310)
T ss_pred eccCcceEEE
Confidence 9999998776
No 34
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=76.23 E-value=19 Score=27.79 Aligned_cols=58 Identities=19% Similarity=0.261 Sum_probs=33.2
Q ss_pred eeeeecCCCCCCCCCCCccccccCCce-------eEEEeCCCCCceeEee---CCceEecCCCCCcEEEEhhhHhh
Q 027317 157 TKVSNYPPCPKPDLIKGLRAHTDAGGI-------ILLFQDDEVSGLQLLK---DDQWVDVPPMKHSIVINLGDQLE 222 (225)
Q Consensus 157 lr~~~Yp~~~~~~~~~g~~~HtD~g~l-------TlL~q~~~~~GLqV~~---~g~W~~v~p~~g~~vVnvGD~l~ 222 (225)
.-+|+|++ .. ++++|.|--.+ ||=+- ...=+.+.. .+..+.+.-.+|+++|.-|++=.
T Consensus 99 ~liN~Y~~-----g~-~i~~H~D~~~~~~~~~I~slSLG--~~~~~~f~~~~~~~~~~~~~L~~gsl~vm~g~~r~ 166 (194)
T PF13532_consen 99 CLINYYRD-----GS-GIGPHSDDEEYGFGPPIASLSLG--SSRVFRFRNKSDDDEPIEVPLPPGSLLVMSGEARY 166 (194)
T ss_dssp EEEEEESS-----TT--EEEE---TTC-CCSEEEEEEEE--S-EEEEEEECGGTS-EEEEEE-TTEEEEEETTHHH
T ss_pred EEEEecCC-----CC-CcCCCCCcccccCCCcEEEEEEc--cCceEEEeeccCCCccEEEEcCCCCEEEeChHHhh
Confidence 34789976 23 78999987633 22221 112244433 37899999999999999998743
No 35
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=74.82 E-value=19 Score=29.20 Aligned_cols=30 Identities=13% Similarity=-0.046 Sum_probs=20.5
Q ss_pred CCceeEeeCCceEecCCCCCcEEEEhhhHh
Q 027317 192 VSGLQLLKDDQWVDVPPMKHSIVINLGDQL 221 (225)
Q Consensus 192 ~~GLqV~~~g~W~~v~p~~g~~vVnvGD~l 221 (225)
.|.|.+.....=..|+|..|.+||.-...+
T Consensus 129 GGEl~~~~~~g~~~Vkp~aG~~vlfps~~l 158 (226)
T PRK05467 129 GGELVIEDTYGEHRVKLPAGDLVLYPSTSL 158 (226)
T ss_pred CCceEEecCCCcEEEecCCCeEEEECCCCc
Confidence 455877643223689999999998766544
No 36
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=74.29 E-value=5.8 Score=34.46 Aligned_cols=52 Identities=17% Similarity=0.080 Sum_probs=37.2
Q ss_pred CCCcEEeCCCCCCCcHHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHHhc
Q 027317 2 ENFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYG 58 (225)
Q Consensus 2 ~~iP~IDl~~l~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~ 58 (225)
+++|.||++.+..+ .+...++.+++.++|++.+.+-.++.+. +.+.++.|-.
T Consensus 108 ~~~~~~d~~~~~~~--~~~~~~~~~~l~~~G~v~~rg~~~~~~~---~~~~~~~~G~ 159 (366)
T TIGR02409 108 LSLPKFDHEAVMKD--DSVLLDWLSAVRDVGIAVLKGAPTKPGA---VEKLGKRIGF 159 (366)
T ss_pred ccCCceeHHHHhCC--HHHHHHHHHHHHhccEEEEeCCCCCHHH---HHHHHHHhcc
Confidence 46788888776533 3556889999999999999998776543 4445555533
No 37
>PRK08333 L-fuculose phosphate aldolase; Provisional
Probab=72.13 E-value=6.7 Score=30.51 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=29.0
Q ss_pred CCcEEeCCCCCCCcHHHHHHHHHHHHHhcceEEEEcCCC
Q 027317 3 NFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGI 41 (225)
Q Consensus 3 ~iP~IDl~~l~~~~~~~~~~~l~~A~~~~Gff~l~nhgi 41 (225)
.||++++... ..++.++++.+++++...+.|.|||+
T Consensus 120 ~v~v~~~~~~---g~~~la~~~~~~l~~~~~vll~nHGv 155 (184)
T PRK08333 120 KIPILPFRPA---GSVELAEQVAEAMKEYDAVIMERHGI 155 (184)
T ss_pred CEeeecCCCC---CcHHHHHHHHHHhccCCEEEEcCCCC
Confidence 5788887642 23678889999999989999999996
No 38
>PRK08130 putative aldolase; Validated
Probab=71.59 E-value=6.5 Score=31.38 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=28.6
Q ss_pred CCcEEeCCCCCCCcHHHHHHHHHHHHHhcceEEEEcCCC
Q 027317 3 NFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGI 41 (225)
Q Consensus 3 ~iP~IDl~~l~~~~~~~~~~~l~~A~~~~Gff~l~nhgi 41 (225)
.||++++... +-.+.++.+.+++++...+.+.|||+
T Consensus 127 ~i~v~~y~~~---g~~~la~~~~~~l~~~~~vll~nHGv 162 (213)
T PRK08130 127 HVPLIPYYRP---GDPAIAEALAGLAARYRAVLLANHGP 162 (213)
T ss_pred ccceECCCCC---ChHHHHHHHHHHhccCCEEEEcCCCC
Confidence 3677776542 23678899999999999999999995
No 39
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=63.65 E-value=16 Score=29.24 Aligned_cols=58 Identities=21% Similarity=0.256 Sum_probs=37.8
Q ss_pred eeeeeecCCCCCCCC-CCCccccccCCceeEEEeCCCCCceeEe--eCCceEecCCCCCcEEEEhhh
Q 027317 156 GTKVSNYPPCPKPDL-IKGLRAHTDAGGIILLFQDDEVSGLQLL--KDDQWVDVPPMKHSIVINLGD 219 (225)
Q Consensus 156 ~lr~~~Yp~~~~~~~-~~g~~~HtD~g~lTlL~q~~~~~GLqV~--~~g~W~~v~p~~g~~vVnvGD 219 (225)
.+|.+||.|.....+ ...+.- --..+.|+ ..+-..+. +.|.=+.|||-=|+.++|+||
T Consensus 91 ~~~~~H~Hp~ade~E~y~vi~G-----~g~m~v~~-~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd 151 (209)
T COG2140 91 AMRELHYHPNADEPEIYYVLKG-----EGRMLVQK-PEGEARVIAVRAGDVIYVPPGYGHYTINTGD 151 (209)
T ss_pred cccccccCCCCCcccEEEEEec-----cEEEEEEc-CCCcEEEEEecCCcEEEeCCCcceEeecCCC
Confidence 378889988654322 222222 23344554 33445554 359999999999999999998
No 40
>PRK05874 L-fuculose-phosphate aldolase; Validated
Probab=63.12 E-value=11 Score=30.16 Aligned_cols=36 Identities=14% Similarity=0.098 Sum_probs=28.4
Q ss_pred CCcEEeCCCCCCCcHHHHHHHHHHHHHhcceEEEEcCCC
Q 027317 3 NFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGI 41 (225)
Q Consensus 3 ~iP~IDl~~l~~~~~~~~~~~l~~A~~~~Gff~l~nhgi 41 (225)
.+|++++... .-.+.++.+.+++.+...+.|.|||+
T Consensus 127 ~v~~~~y~~~---gs~ela~~v~~~l~~~~~vlL~nHGv 162 (217)
T PRK05874 127 DVRCTEYAAS---GTPEVGRNAVRALEGRAAALIANHGL 162 (217)
T ss_pred ceeeecCCCC---CcHHHHHHHHHHhCcCCEEEEcCCCC
Confidence 3677766532 23688899999999999999999996
No 41
>PRK08660 L-fuculose phosphate aldolase; Provisional
Probab=58.51 E-value=15 Score=28.46 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=26.9
Q ss_pred CCcEEeCCCCCCCcHHHHHHHHHHHHHhcceEEEEcCCC
Q 027317 3 NFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGI 41 (225)
Q Consensus 3 ~iP~IDl~~l~~~~~~~~~~~l~~A~~~~Gff~l~nhgi 41 (225)
.||++ .... +-.+.++.+.+++.+.-.+.|.|||+
T Consensus 115 ~ipv~-~~~~---~~~~la~~v~~~l~~~~~vll~nHG~ 149 (181)
T PRK08660 115 TIPVV-GGDI---GSGELAENVARALSEHKGVVVRGHGT 149 (181)
T ss_pred CEeEE-eCCC---CCHHHHHHHHHHHhhCCEEEEcCCCc
Confidence 47877 3322 23577889999999999999999996
No 42
>PRK06833 L-fuculose phosphate aldolase; Provisional
Probab=56.59 E-value=15 Score=29.31 Aligned_cols=36 Identities=22% Similarity=0.195 Sum_probs=27.0
Q ss_pred CCcEEeCCCCCCCcHHHHHHHHHHHHHhcceEEEEcCCC
Q 027317 3 NFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGI 41 (225)
Q Consensus 3 ~iP~IDl~~l~~~~~~~~~~~l~~A~~~~Gff~l~nhgi 41 (225)
.||++.+.. .+-.+.++.+.+++.+...+.|.|||+
T Consensus 124 ~i~~~~y~~---~gs~~la~~v~~~l~~~~~vll~nHGv 159 (214)
T PRK06833 124 NVRCAEYAT---FGTKELAENAFEAMEDRRAVLLANHGL 159 (214)
T ss_pred CeeeccCCC---CChHHHHHHHHHHhCcCCEEEECCCCC
Confidence 356665542 233577888999999999999999996
No 43
>PF00596 Aldolase_II: Class II Aldolase and Adducin N-terminal domain; InterPro: IPR001303 This entry represents the alpha/beta/alpha domain found in class II aldolases and adducin, usually at the N terminus. These proteins form part of a family that includes: rhamnulose-1-phosphate aldolase (4.1.2.19 from EC), L-fuculose phosphate aldolase (4.1.2.17 from EC) [, ] that is involved in the third step in fucose metabolism, L-ribulose- 5-phosphate 4-epimerase (5.1.3.4 from EC) involved in the third step of L-arabinose catabolism, a probable sugar isomerase SgbE, hypothetical proteins and the metazoan adducins which have not been ascribed any enzymatic function but which play a role in cell membrane cytoskeleton organisation. Adducins are members of the Ig superfamily and encode cell surface sialoglycoproteins expressed by cytokine-activated endothelium. This type I membrane protein mediates leukocyte-endothelial cell adhesion and signal transduction, and may play a role in the development of artherosclerosis and rheumatoid arthritis. Adducin is a cell-membrane skeletal protein that was first purified from human erythrocytes and subsequently isolated from bovine brain membranes. Isoforms of this protein have been detected in lung, kidney, testes and liver. Erythrocyte adducin is a 200kDa heterodimer protein, composed of alpha and beta subunits, present at about 30,000 copies per cell. It binds with high affinity to Ca(2+)/calmodulin and is a substrate for protein kinases A and C. Both alpha-adducin and beta-adducin show alternative splicing. Thus, there may be several different heterodimeric or homodimeric forms of adducin, each with a different functional specificity. It is thought to play a role in assembly of the spectrin-actin lattice that underlies the plasma membrane []. Missense mutations in both the alpha- and beta-adducin genes that alter amino acids that are normally phosphorylated have been associated with the regulation of blood pressure in the Milan hypertensive strain (MHS) of rats. Gamma adducin was isolated from human foetal brain []. It shows a high degree of similarity to the alpha and beta adducins.; GO: 0046872 metal ion binding; PDB: 2V9N_B 1GT7_B 2V9O_E 2V9M_B 2V9F_A 2UYV_A 1OJR_A 2V9G_C 2V29_B 2V9I_A ....
Probab=55.39 E-value=9.5 Score=29.44 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=32.9
Q ss_pred CCcEEeCCCCCCCcHHHHHHHHHHHHH-hcceEEEEcCCCC--hHHHHHHHHHHH
Q 027317 3 NFPIIDLSKLNGDERSATMEMINDACE-NWGFFELVNHGIS--HELLDTVQRLTK 54 (225)
Q Consensus 3 ~iP~IDl~~l~~~~~~~~~~~l~~A~~-~~Gff~l~nhgi~--~~~~~~~~~~~~ 54 (225)
.+|+++..... -.+.++.+.++++ +...+.+.|||+= -+.+++++..+.
T Consensus 123 ~v~~~~~~~~~---~~~l~~~i~~~l~~~~~~vll~nHG~~~~G~s~~~A~~~~~ 174 (184)
T PF00596_consen 123 EVPVVPYAPPG---SEELAEAIAEALGEDRKAVLLRNHGVVVWGKSLEEAFYRAE 174 (184)
T ss_dssp CEEEE-THSTT---CHHHHHHHHHHHTCTSSEEEETTTEEEEEESSHHHHHHHHH
T ss_pred cceeecccccc---chhhhhhhhhhhcCCceEEeecCCceEEEeCCHHHHHHHHH
Confidence 57888886532 2456788999999 8899999999952 223455554443
No 44
>PRK08087 L-fuculose phosphate aldolase; Provisional
Probab=54.43 E-value=31 Score=27.56 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=28.2
Q ss_pred CCcEEeCCCCCCCcHHHHHHHHHHHHHhcceEEEEcCCC
Q 027317 3 NFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGI 41 (225)
Q Consensus 3 ~iP~IDl~~l~~~~~~~~~~~l~~A~~~~Gff~l~nhgi 41 (225)
.||++.+.... -.+.++.+.+++.+...+.+.|||+
T Consensus 122 ~v~~~~y~~~g---s~~la~~~~~~l~~~~~vLl~nHGv 157 (215)
T PRK08087 122 SIPCAPYATFG---TRELSEHVALALKNRKATLLQHHGL 157 (215)
T ss_pred CceeecCCCCC---CHHHHHHHHHHhCcCCEEEecCCCC
Confidence 47888766532 2567888999998888999999996
No 45
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=54.26 E-value=22 Score=30.89 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=34.7
Q ss_pred CcEEeCCCCCCCcHHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHHh
Q 027317 4 FPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHY 57 (225)
Q Consensus 4 iP~IDl~~l~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF 57 (225)
+|.+|+..+...+ .+...++.+++.++|+..+.|-.++.+.. .+.++.|.
T Consensus 101 ~~~~~~~~~~~~~-d~~l~~~l~~l~~~G~v~~~g~~~~~~~~---~~~a~riG 150 (362)
T TIGR02410 101 DPSVHFKTTYDHT-DSTLKSFSKNIYKYGFTFVDNVPVTPEAT---EKLCERIS 150 (362)
T ss_pred CCceeHHHHhccC-HHHHHHHHHHHHhhCEEEEcCCCCCHHHH---HHHHHHhc
Confidence 4667776654322 35678999999999999999988765443 44455553
No 46
>TIGR01086 fucA L-fuculose phosphate aldolase. Members of this family are L-fuculose phosphate aldolase from various Proteobacteria, encoded in fucose utilization operons. Homologs in other bacteria given similar annotation may share extensive sequence similarity but are not experimenally characterized and are not found in apparent fucose utilization operons; we consider their annotation as L-fuculose phosphate aldolase to be tenuous. This model has been narrowed in scope from the previous version.
Probab=52.45 E-value=19 Score=28.68 Aligned_cols=36 Identities=14% Similarity=0.245 Sum_probs=26.8
Q ss_pred CCcEEeCCCCCCCcHHHHHHHHHHHHHhcceEEEEcCCC
Q 027317 3 NFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGI 41 (225)
Q Consensus 3 ~iP~IDl~~l~~~~~~~~~~~l~~A~~~~Gff~l~nhgi 41 (225)
.||++.+.... -.+.++.+.+++.+...+.|.|||+
T Consensus 121 ~i~~v~y~~~g---s~~la~~v~~~~~~~~~vLL~nHG~ 156 (214)
T TIGR01086 121 NIPCVPYATFG---STKLASEVVAGILKSKAILLLHHGL 156 (214)
T ss_pred CccccCCCCCC---hHHHHHHHHHHhhhCCEEehhcCCC
Confidence 36666665432 2467788888888889999999995
No 47
>PRK03634 rhamnulose-1-phosphate aldolase; Provisional
Probab=52.40 E-value=21 Score=29.76 Aligned_cols=35 Identities=9% Similarity=0.105 Sum_probs=26.6
Q ss_pred CcEEeCCCCCCCcHHHHHHHHHHHHHhcceEEEEcCCC
Q 027317 4 FPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGI 41 (225)
Q Consensus 4 iP~IDl~~l~~~~~~~~~~~l~~A~~~~Gff~l~nhgi 41 (225)
||++.+... .-.+.++.+.+++++...+.|.|||+
T Consensus 180 i~vvpy~~p---gs~eLa~~v~~~l~~~~avLL~nHGv 214 (274)
T PRK03634 180 VGIVPWMVP---GTDEIGQATAEKMQKHDLVLWPKHGV 214 (274)
T ss_pred eeEecCCCC---CCHHHHHHHHHHhccCCEEEEcCCCC
Confidence 566655432 23578888999999889999999996
No 48
>PF06820 Phage_fiber_C: Putative prophage tail fibre C-terminus; InterPro: IPR009640 This entry represents the C terminus of phage 933W tail fibre protein. This domain is found together with conserved RLGP motif. The characteristics of the protein distribution suggest prophage matches.
Probab=51.33 E-value=15 Score=22.87 Aligned_cols=35 Identities=31% Similarity=0.458 Sum_probs=22.9
Q ss_pred CCccccccC---CceeEEE-------eCCCCCceeEee-CCceEecC
Q 027317 172 KGLRAHTDA---GGIILLF-------QDDEVSGLQLLK-DDQWVDVP 207 (225)
Q Consensus 172 ~g~~~HtD~---g~lTlL~-------q~~~~~GLqV~~-~g~W~~v~ 207 (225)
.|.-+-||- .-+|+|- |. -..-|||+. ||.|-+|+
T Consensus 16 nG~~P~tdg~liT~ltfL~pkd~~~vq~-~f~~LQv~fgDGpWqdik 61 (64)
T PF06820_consen 16 NGWFPETDGRLITGLTFLDPKDATRVQG-VFRHLQVRFGDGPWQDIK 61 (64)
T ss_pred CccccCCCcceEeeeEEecccCchhhee-eeeeeEEEeccCChhhcc
Confidence 456677773 3456662 21 246799984 89999886
No 49
>PRK06755 hypothetical protein; Validated
Probab=51.16 E-value=26 Score=28.02 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=27.1
Q ss_pred CCcEEeCCCCCCCcHHHHHHHHHHHHHhcceEEEEcCCC
Q 027317 3 NFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGI 41 (225)
Q Consensus 3 ~iP~IDl~~l~~~~~~~~~~~l~~A~~~~Gff~l~nhgi 41 (225)
.||+|....- ..++.++.+.++.++...+.|.|||+
T Consensus 136 ~IPiv~~~~~---~~~~la~~~~~~~~~~~avLl~~HGv 171 (209)
T PRK06755 136 TIPIVEDEKK---FADLLENNVPNFIEGGGVVLVHNYGM 171 (209)
T ss_pred EEEEEeCCCc---hhHHHHHHHHhhccCCCEEEEcCCCe
Confidence 4888887542 22566777778888888899999996
No 50
>PRK06357 hypothetical protein; Provisional
Probab=47.47 E-value=35 Score=27.34 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=25.9
Q ss_pred CCcEEeCCCCCCCcHHHHHHHHHHHHHhc------ceEEEEcCCC
Q 027317 3 NFPIIDLSKLNGDERSATMEMINDACENW------GFFELVNHGI 41 (225)
Q Consensus 3 ~iP~IDl~~l~~~~~~~~~~~l~~A~~~~------Gff~l~nhgi 41 (225)
.||++.+.... .++.++.+.+++++. ..+.|.|||+
T Consensus 130 ~i~~~p~~~~g---s~ela~~v~~~l~~~~~~~~~~~vLl~nHGv 171 (216)
T PRK06357 130 KIPTLPFAPAT---SPELAEIVRKHLIELGDKAVPSAFLLNSHGI 171 (216)
T ss_pred CcceecccCCC---cHHHHHHHHHHHhhcCcccCCCEEEECCCCC
Confidence 36777665432 367888888888765 4889999996
No 51
>PRK05834 hypothetical protein; Provisional
Probab=45.12 E-value=25 Score=27.71 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=24.0
Q ss_pred CcEEeCCCCCCCcHHHHHHHHHHHHHhcc--eEEEEcCCC
Q 027317 4 FPIIDLSKLNGDERSATMEMINDACENWG--FFELVNHGI 41 (225)
Q Consensus 4 iP~IDl~~l~~~~~~~~~~~l~~A~~~~G--ff~l~nhgi 41 (225)
||++...... ...+..++.+.+++++.. .+.|.|||+
T Consensus 122 ipv~~~~~~~-~~~~~la~~v~~~l~~~~~~avLL~nHGv 160 (194)
T PRK05834 122 ISIYDPKDFD-DWYERADTEILRYLQEKNKNFVVIKGYGV 160 (194)
T ss_pred eeecCccccc-hHHHhHHHHHHHHHhhcCCCEEEEcCCcc
Confidence 6666544332 112245677888888755 899999995
No 52
>PRK06557 L-ribulose-5-phosphate 4-epimerase; Validated
Probab=44.51 E-value=28 Score=27.90 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=26.2
Q ss_pred CCcEEeCCCCCCCcHHHHHHHHHHHH--HhcceEEEEcCCC
Q 027317 3 NFPIIDLSKLNGDERSATMEMINDAC--ENWGFFELVNHGI 41 (225)
Q Consensus 3 ~iP~IDl~~l~~~~~~~~~~~l~~A~--~~~Gff~l~nhgi 41 (225)
.||++.+... ...+.++++.+++ .+...+.|.|||+
T Consensus 130 ~ip~~~y~~~---g~~ela~~i~~~l~~~~~~~vll~nHG~ 167 (221)
T PRK06557 130 PIPVGPFALI---GDEAIGKGIVETLKGGRSPAVLMQNHGV 167 (221)
T ss_pred CeeccCCcCC---CcHHHHHHHHHHhCcCCCCEEEECCCCc
Confidence 4677665432 2256778888888 6778899999996
No 53
>PF11243 DUF3045: Protein of unknown function (DUF3045); InterPro: IPR021405 This entry is represented by Bacteriophage T4, Gp30.1; it is a family of uncharacterised viral proteins.
Probab=44.03 E-value=21 Score=23.75 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=17.3
Q ss_pred HHHHHHHHhcceEEEEcCCCC
Q 027317 22 EMINDACENWGFFELVNHGIS 42 (225)
Q Consensus 22 ~~l~~A~~~~Gff~l~nhgi~ 42 (225)
+.|..-|.+.||.|+.-|-+.
T Consensus 36 ~~if~eCVeqGFiYVs~~~~~ 56 (89)
T PF11243_consen 36 EPIFKECVEQGFIYVSKYWMD 56 (89)
T ss_pred cHHHHHHHhcceEEEEeeeec
Confidence 468889999999999777553
No 54
>PF01471 PG_binding_1: Putative peptidoglycan binding domain; InterPro: IPR002477 This entry represents peptidoglycan binding domain (PGBD), as well as related domains that share the same structure. PGBD may have a general peptidoglycan binding function, has a core structure consisting of a closed, three-helical bundle with a left-handed twist. It is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [, , ]. Examples are: Muramoyl-pentapeptide carboxypeptidase (3.4.17.8 from EC) N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall hydrolase, autolysin, 3.5.1.28 from EC) Autolytic lysozyme (1,4-beta-N-acetylmuramidase, autolysin, 3.2.1.17 from EC) Membrane-bound lytic murein transglycosylase B Zinc-containing D-alanyl-D-alanine-cleaving carboxypeptidase, VanX []. Many of the proteins having this domain are as yet uncharacterised. However, some are known to belong to MEROPS peptidase family M15 (clan MD), subfamily M15A metallopeptidases. A number of the proteins belonging to subfamily M15A are non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Eukaryotic enzymes can contain structurally similar PGBD-like domains. Matrix metalloproteinases (MMP), which catalyse extracellular matrix degradation, have N-terminal domains that resemble PGBD. Examples are gelatinase A (MMP-2), which degrades type IV collagen [], stromelysin-1 (MMP-3), which plays a role in arthritis and tumour invasion [, ], and gelatinase B (MMP-9) secreted by neutrophils as part of the innate immune defence mechanism []. Several MMPs are implicated in cancer progression, since degradation of the extracellular matrix is an essential step in the cascade of metastasis [].; GO: 0008152 metabolic process; PDB: 1L6J_A 3BKH_A 3BKV_A 1GXD_A 1EAK_D 1CK7_A 1SLM_A 1LBU_A 1SU3_B.
Probab=43.34 E-value=39 Score=20.32 Aligned_cols=43 Identities=9% Similarity=0.130 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHHhcCCH
Q 027317 19 ATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCM 61 (225)
Q Consensus 19 ~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~ 61 (225)
+.+..|...+...||......|+-.....++....+..+.|+.
T Consensus 3 ~~v~~lq~~L~~~gy~~~~~~g~~~~~t~~Av~~fQ~~~gL~~ 45 (57)
T PF01471_consen 3 PDVKALQQYLNRLGYYPGPVDGIFDPETREAVKAFQKANGLPV 45 (57)
T ss_dssp HHHHHHHHHHHHTTTT-SSTTSBSHHHHHHHHHHHHHHTTS-S
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCcCHHHHHHHHHHHHHcCcCC
Confidence 3457888999999998555556666677777777778888774
No 55
>cd00398 Aldolase_II Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes catalyzing central steps of carbohydrate metabolism. Based on enzymatic mechanisms, this superfamily has been divided into two distinct classes (Class I and II). Class II enzymes are further divided into two sub-classes A and B. This family includes class II A aldolases and adducins which has not been ascribed any enzymatic function. Members of this class are primarily bacterial and eukaryotic in origin and include L-fuculose-1-phosphate, L-rhamnulose-1-phosphate aldolases and L-ribulose-5-phosphate 4-epimerases. They all share the ability to promote carbon-carbon bond cleavage and stabilize enolate intermediates using divalent cations.
Probab=43.21 E-value=23 Score=28.04 Aligned_cols=38 Identities=16% Similarity=0.079 Sum_probs=27.4
Q ss_pred CCcEEeCCCCCCCcHHHHHHHHHHHHHhcceEEEEcCCC
Q 027317 3 NFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGI 41 (225)
Q Consensus 3 ~iP~IDl~~l~~~~~~~~~~~l~~A~~~~Gff~l~nhgi 41 (225)
.||++++.... ...++.++.+.+++.+.-.+.|.|||+
T Consensus 122 ~ip~~~~~~~~-~~~~~la~~~~~~l~~~~~vll~nHG~ 159 (209)
T cd00398 122 DIPCTPYMTPE-TGEDEIGTQRALGFPNSKAVLLRNHGL 159 (209)
T ss_pred CeeecCCcCCC-ccHHHHHHHHhcCCCcCCEEEEcCCCC
Confidence 57888776531 123566677777778888999999996
No 56
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=43.15 E-value=55 Score=27.16 Aligned_cols=39 Identities=10% Similarity=0.056 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHHhcC
Q 027317 18 SATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGK 59 (225)
Q Consensus 18 ~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~l 59 (225)
.+..++|.+|+.++|++.+.|..++. ++..+.++.|-.+
T Consensus 27 ~~~~~~l~~~l~~~Gvlvfr~q~l~~---~~~~~~~~~~G~~ 65 (277)
T PRK09553 27 DNQFEQLYHALLRHQVLFFRDQPITP---QQQRDLAARFGDL 65 (277)
T ss_pred HHHHHHHHHHHHHCCEEEECCCCCCH---HHHHHHHHHhCCC
Confidence 45678899999999999999988774 4556666677654
No 57
>TIGR02624 rhamnu_1P_ald rhamnulose-1-phosphate aldolase. Members of this family are the enzyme RhaD, rhamnulose-1-phosphate aldolase.
Probab=43.13 E-value=50 Score=27.50 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=26.5
Q ss_pred CcEEeCCCCCCCcHHHHHHHHHHHHHhcceEEEEcCCC
Q 027317 4 FPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGI 41 (225)
Q Consensus 4 iP~IDl~~l~~~~~~~~~~~l~~A~~~~Gff~l~nhgi 41 (225)
||++.+.. ..-.+.++.+.+++++..-+.|.|||+
T Consensus 178 i~vvp~~~---pGs~eLA~~v~~~l~~~~avLL~nHGv 212 (270)
T TIGR02624 178 VGIIPWMV---PGTNEIGEATAEKMKEHRLVLWPHHGI 212 (270)
T ss_pred cccccCcC---CCCHHHHHHHHHHhccCCEEEEcCCCC
Confidence 55554433 223688899999999999999999996
No 58
>PRK06661 hypothetical protein; Provisional
Probab=42.46 E-value=34 Score=27.73 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhcceEEEEcCCC
Q 027317 18 SATMEMINDACENWGFFELVNHGI 41 (225)
Q Consensus 18 ~~~~~~l~~A~~~~Gff~l~nhgi 41 (225)
.+.++.+.+++.+...+.|.|||+
T Consensus 137 ~~~~~~~a~~l~~~~avll~nHG~ 160 (231)
T PRK06661 137 DKQSSRLVNDLKQNYVMLLRNHGA 160 (231)
T ss_pred hhHHHHHHHHhCCCCEEEECCCCC
Confidence 466788999999999999999996
No 59
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=41.73 E-value=78 Score=26.65 Aligned_cols=40 Identities=25% Similarity=0.415 Sum_probs=29.6
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHH
Q 027317 9 LSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTK 54 (225)
Q Consensus 9 l~~l~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~ 54 (225)
++.+++..+.. ..+++++.|||.+.| +|..++.++.+...
T Consensus 6 iTGlSGaGKs~----Al~~lED~Gy~cvDN--lP~~Ll~~l~~~~~ 45 (284)
T PF03668_consen 6 ITGLSGAGKST----ALRALEDLGYYCVDN--LPPSLLPQLIELLA 45 (284)
T ss_pred EeCCCcCCHHH----HHHHHHhcCeeEEcC--CcHHHHHHHHHHHH
Confidence 44555555433 467899999999998 88889888877655
No 60
>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins. In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho
Probab=39.69 E-value=1.2e+02 Score=22.50 Aligned_cols=38 Identities=11% Similarity=0.263 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhcceEEEEcC-CCChHHHHHHHHHHH
Q 027317 17 RSATMEMINDACENWGFFELVNH-GISHELLDTVQRLTK 54 (225)
Q Consensus 17 ~~~~~~~l~~A~~~~Gff~l~nh-gi~~~~~~~~~~~~~ 54 (225)
+....+++.+.++++.++++.++ |++...+.++....+
T Consensus 3 K~~~v~~l~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~ 41 (155)
T cd00379 3 KEELVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELR 41 (155)
T ss_pred hHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHH
Confidence 46788999999999998888876 788777766665544
No 61
>TIGR03328 salvage_mtnB methylthioribulose-1-phosphate dehydratase. Members of this family are the methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway. This pathway allows methylthioadenosine, left over from polyamine biosynthesis, to be recycled to methionine.
Probab=39.19 E-value=46 Score=26.03 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=24.8
Q ss_pred CcEEeCCCCCCCcHHHHHHHHHHHHH---hcceEEEEcCCC
Q 027317 4 FPIIDLSKLNGDERSATMEMINDACE---NWGFFELVNHGI 41 (225)
Q Consensus 4 iP~IDl~~l~~~~~~~~~~~l~~A~~---~~Gff~l~nhgi 41 (225)
||++.. . ..-++.++.+.++++ +...+.|.|||+
T Consensus 127 vp~~~~-~---~gs~ela~~~~~~l~~~~~~~avll~nHGv 163 (193)
T TIGR03328 127 IPIFEN-T---QDIARLADSVAPYLEAYPDVPGVLIRGHGL 163 (193)
T ss_pred EeeecC-C---CChHHHHHHHHHHHhcCCCCCEEEEcCCcc
Confidence 666653 1 223678889999986 478899999996
No 62
>PRK04516 minC septum formation inhibitor; Reviewed
Probab=38.35 E-value=77 Score=25.90 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=29.2
Q ss_pred CCc-EEeCCCCCCCcHHHHHHHHHHHHHhcceEEEEcCCCChH
Q 027317 3 NFP-IIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHE 44 (225)
Q Consensus 3 ~iP-~IDl~~l~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~ 44 (225)
+.| |||++.+..... .....|.+.|++.|+.-+--.|-+.+
T Consensus 46 ~aPvVldl~~l~~~~~-~dl~~L~~~l~~~gl~~vGv~g~~~~ 87 (235)
T PRK04516 46 VVPFVLDVQEFDYPES-LDLAALVSLFSRHGMQILGLKHSNER 87 (235)
T ss_pred CCcEEEEchhhCCccc-ccHHHHHHHHHHCCCEEEEEeCCCHH
Confidence 456 789999863222 23567999999999998876665544
No 63
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=37.84 E-value=46 Score=19.94 Aligned_cols=40 Identities=28% Similarity=0.332 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHh
Q 027317 108 DDYRKAMKEFAVELEKVAEQLLELLCENLGLEEGYLKKVF 147 (225)
Q Consensus 108 ~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~ 147 (225)
+.-...+++++.........-...||..||++.......|
T Consensus 9 ~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF 48 (57)
T PF00046_consen 9 KEQLKVLEEYFQENPYPSKEEREELAKELGLTERQVKNWF 48 (57)
T ss_dssp HHHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccccccccccccccccccccCH
Confidence 4567789999998888888889999999999977655444
No 64
>PRK04596 minC septum formation inhibitor; Reviewed
Probab=37.32 E-value=62 Score=26.64 Aligned_cols=43 Identities=19% Similarity=0.103 Sum_probs=30.0
Q ss_pred EEeCCCCCCCcHHHHHHHHHHHHHhcceEEEEcCCCChHHHHH
Q 027317 6 IIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDT 48 (225)
Q Consensus 6 ~IDl~~l~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~ 48 (225)
|||++.+.......-...|.+.|+++|++-|--.|-+.+..+.
T Consensus 54 VlDl~~l~~~~~~~dl~~L~~~Lr~~gl~~vGV~g~~~~~~~~ 96 (248)
T PRK04596 54 ILDFGGLSQVPDLATAKALLDGLRSAGVLPVALAYGTSEIDLL 96 (248)
T ss_pred EEEchhhcCccccccHHHHHHHHHHCCCEEEEEeCCCHHHHHH
Confidence 6899988532211224669999999999998888876665443
No 65
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=36.29 E-value=1.2e+02 Score=24.36 Aligned_cols=55 Identities=18% Similarity=0.239 Sum_probs=33.8
Q ss_pred eeecCCCCCCCCCCCccccccC-----CceeEEEeCCCCCc-eeEe---eCCceEecCCCCCcEEEEhhhH
Q 027317 159 VSNYPPCPKPDLIKGLRAHTDA-----GGIILLFQDDEVSG-LQLL---KDDQWVDVPPMKHSIVINLGDQ 220 (225)
Q Consensus 159 ~~~Yp~~~~~~~~~g~~~HtD~-----g~lTlL~q~~~~~G-LqV~---~~g~W~~v~p~~g~~vVnvGD~ 220 (225)
+|+|.+- . +++.|.|- +..-+-..- +.+. +.+. +.+.+..+.-.+|+++|.-|++
T Consensus 120 vN~Y~~G-----~-~mg~H~D~~E~~~~~pI~SvSL-G~~~~F~~~~~~~~~~~~~l~L~~Gdllvm~G~s 183 (213)
T PRK15401 120 INRYAPG-----A-KLSLHQDKDERDFRAPIVSVSL-GLPAVFQFGGLKRSDPLQRILLEHGDVVVWGGPS 183 (213)
T ss_pred EEeccCc-----C-ccccccCCCcccCCCCEEEEeC-CCCeEEEecccCCCCceEEEEeCCCCEEEECchH
Confidence 7999853 2 68889983 211111111 1222 2332 1356899999999999999986
No 66
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=35.29 E-value=1.1e+02 Score=25.54 Aligned_cols=44 Identities=14% Similarity=0.219 Sum_probs=33.8
Q ss_pred EEeCCCCCCCcHHHHHHHHHHHHHhcceEEEEcC-CCChHHHHHHHHHHHH
Q 027317 6 IIDLSKLNGDERSATMEMINDACENWGFFELVNH-GISHELLDTVQRLTKE 55 (225)
Q Consensus 6 ~IDl~~l~~~~~~~~~~~l~~A~~~~Gff~l~nh-gi~~~~~~~~~~~~~~ 55 (225)
+|||+. ++...++.+-|.+.|.-.|++. |.+++.++++-++++.
T Consensus 73 ~IDFT~------P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~ 117 (266)
T COG0289 73 LIDFTT------PEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEK 117 (266)
T ss_pred EEECCC------chhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhh
Confidence 466664 4566778888888998777765 8999888888888776
No 67
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=34.13 E-value=68 Score=23.03 Aligned_cols=43 Identities=21% Similarity=0.323 Sum_probs=28.5
Q ss_pred EEeCCCCCCCcHHHHHHHHHHHHHhcceEEEEcC-CCChHHHHHHHHHHH
Q 027317 6 IIDLSKLNGDERSATMEMINDACENWGFFELVNH-GISHELLDTVQRLTK 54 (225)
Q Consensus 6 ~IDl~~l~~~~~~~~~~~l~~A~~~~Gff~l~nh-gi~~~~~~~~~~~~~ 54 (225)
+||++. .+.+....+.|.+.|-=.|++. |.+++.++.+.++++
T Consensus 71 vIDfT~------p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~ 114 (124)
T PF01113_consen 71 VIDFTN------PDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAK 114 (124)
T ss_dssp EEEES-------HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTT
T ss_pred EEEcCC------hHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhc
Confidence 567763 4566677777777898888854 887777777666554
No 68
>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]
Probab=34.10 E-value=79 Score=22.09 Aligned_cols=41 Identities=20% Similarity=0.196 Sum_probs=29.3
Q ss_pred CcEEeCCCCC--CCcHHHHHHHHHHHHHhcceEEEEcCCCChHH
Q 027317 4 FPIIDLSKLN--GDERSATMEMINDACENWGFFELVNHGISHEL 45 (225)
Q Consensus 4 iP~IDl~~l~--~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~ 45 (225)
+--||++.+. ++.--...-.+.+-|+..|. .+.-+|+|+.+
T Consensus 41 ~~~idLs~v~rvDSaglALL~~~~~~~k~~g~-~~~L~~~p~~L 83 (99)
T COG3113 41 TVRIDLSGVSRVDSAGLALLLHLIRLAKKQGN-AVTLTGVPEQL 83 (99)
T ss_pred eEEEehhhcceechHHHHHHHHHHHHHHHcCC-eeEEecCcHHH
Confidence 3458888875 22234566778888999898 77788999875
No 69
>PF15167 DUF4581: Domain of unknown function (DUF4581)
Probab=32.03 E-value=1.3e+02 Score=21.46 Aligned_cols=40 Identities=10% Similarity=0.203 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHcCCC---hhhHHHHhc
Q 027317 109 DYRKAMKEFAVEL-----EKVAEQLLELLCENLGLE---EGYLKKVFY 148 (225)
Q Consensus 109 ~f~~~~~~y~~~~-----~~l~~~ll~~l~~~Lgl~---~~~~~~~~~ 148 (225)
.|.+....|++.| +++..+|.+.+--.|||| .+.|.+++.
T Consensus 62 pflqlaqdyisscGKk~l~e~leKvf~sf~pllglpd~ddd~f~~y~a 109 (128)
T PF15167_consen 62 PFLQLAQDYISSCGKKTLTESLEKVFKSFRPLLGLPDADDDAFEEYSA 109 (128)
T ss_pred HHHHHHHHHHHHhchhHHHHHHHHHHHhhhhccCCCCCcchhHHHhcc
Confidence 4666677777654 567788888888889998 356766554
No 70
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=30.18 E-value=1e+02 Score=24.64 Aligned_cols=35 Identities=20% Similarity=0.373 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHH
Q 027317 19 ATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEH 56 (225)
Q Consensus 19 ~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~f 56 (225)
+..+++++++.+.||+.|.+-.++.+.+ .+.++.|
T Consensus 24 ~~~~~~~~~l~~~G~vvlrg~~~~~~~~---~~~~~~~ 58 (258)
T PF02668_consen 24 EELEELREALAEYGFVVLRGFPLDPEQF---EALASRL 58 (258)
T ss_dssp CHHHHHHHHHHHHSEEEEESCTSSHHHH---HHHHHHH
T ss_pred HHHHHHHHHHhcccEEEEcCCCCCHHHH---HHHHHhh
Confidence 4778999999999999999877655443 3455555
No 71
>PRK15331 chaperone protein SicA; Provisional
Probab=30.14 E-value=60 Score=24.99 Aligned_cols=43 Identities=28% Similarity=0.353 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHHhcCC
Q 027317 17 RSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKC 60 (225)
Q Consensus 17 ~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp 60 (225)
.++.++.|.+|+.+ |-=.-.-|||+++.++.++..+..||..-
T Consensus 9 ~~~~~~~i~~al~~-G~tlk~l~gis~~~le~iY~~Ay~~y~~G 51 (165)
T PRK15331 9 EERVAEMIWDAVSE-GATLKDVHGIPQDMMDGLYAHAYEFYNQG 51 (165)
T ss_pred HHHHHHHHHHHHHC-CCCHHHHhCCCHHHHHHHHHHHHHHHHCC
Confidence 46778889999888 43333458999999999999999999764
No 72
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=29.63 E-value=48 Score=20.46 Aligned_cols=17 Identities=24% Similarity=0.472 Sum_probs=12.7
Q ss_pred ceeEeeCCceEecCCCC
Q 027317 194 GLQLLKDDQWVDVPPMK 210 (225)
Q Consensus 194 GLqV~~~g~W~~v~p~~ 210 (225)
=+||..+++|+.+.|.+
T Consensus 52 W~ev~~~~~W~~~D~~~ 68 (68)
T smart00460 52 WAEVYLEGGWVPVDPTP 68 (68)
T ss_pred EEEEEECCCeEEEeCCC
Confidence 36677678999988754
No 73
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=29.48 E-value=99 Score=24.18 Aligned_cols=38 Identities=32% Similarity=0.455 Sum_probs=22.7
Q ss_pred CceeEEEeCCCCCceeE-----e--eCCceEecCCCCCcEEEEhhhH
Q 027317 181 GGIILLFQDDEVSGLQL-----L--KDDQWVDVPPMKHSIVINLGDQ 220 (225)
Q Consensus 181 g~lTlL~q~~~~~GLqV-----~--~~g~W~~v~p~~g~~vVnvGD~ 220 (225)
|.=.+|+|+ ..|.+| . ..|.-+.|||-=++.+||+||-
T Consensus 92 G~g~~lLq~--~~~~~~~~~~~v~~~~G~~v~IPp~yaH~tIN~g~~ 136 (182)
T PF06560_consen 92 GEGLILLQK--EEGDDVGDVIAVEAKPGDVVYIPPGYAHRTINTGDE 136 (182)
T ss_dssp SSEEEEEE---TTS-----EEEEEE-TTEEEEE-TT-EEEEEE-SSS
T ss_pred CEEEEEEEe--cCCCcceeEEEEEeCCCCEEEECCCceEEEEECCCC
Confidence 344677785 344222 1 3699999999999999999983
No 74
>PRK08193 araD L-ribulose-5-phosphate 4-epimerase; Reviewed
Probab=29.36 E-value=95 Score=25.07 Aligned_cols=39 Identities=15% Similarity=0.077 Sum_probs=25.0
Q ss_pred CCcEEeCCCCCC---CcHHHHHHHHHHHHHhc-------ceEEEEcCCC
Q 027317 3 NFPIIDLSKLNG---DERSATMEMINDACENW-------GFFELVNHGI 41 (225)
Q Consensus 3 ~iP~IDl~~l~~---~~~~~~~~~l~~A~~~~-------Gff~l~nhgi 41 (225)
.||+++...-.+ ....+.++.+.+++++. ..+.|.|||+
T Consensus 124 ~ip~~~~~~~~~~~~~~~~~~~~~ia~~l~~~~~~~~~~~avLl~nHG~ 172 (231)
T PRK08193 124 DIPCTRKMTDEEINGEYEWETGKVIVETFEKRGIDPAAVPGVLVHSHGP 172 (231)
T ss_pred CcceecCCCcccccccchhhHHHHHHHHHhhccCCcccCCEEEEcCCCc
Confidence 477776532110 11246778888888764 4788999995
No 75
>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in
Probab=27.85 E-value=2e+02 Score=21.48 Aligned_cols=38 Identities=5% Similarity=0.149 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhcceEEEEcC-CCChHHHHHHHHHHH
Q 027317 17 RSATMEMINDACENWGFFELVNH-GISHELLDTVQRLTK 54 (225)
Q Consensus 17 ~~~~~~~l~~A~~~~Gff~l~nh-gi~~~~~~~~~~~~~ 54 (225)
+....+++.+.+++.-++++.++ |++...+.++....+
T Consensus 5 K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr 43 (157)
T cd05797 5 KEEIVAELKEKLKEAKSVVVADYRGLTVAQLTELRKELR 43 (157)
T ss_pred HHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHH
Confidence 46778889999999888887765 788777776666554
No 76
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=27.70 E-value=2.8e+02 Score=21.25 Aligned_cols=56 Identities=21% Similarity=0.186 Sum_probs=34.7
Q ss_pred eeeecCCCCCCCCCCCccccccCCcee----EEE-eCCCCCc-eeEee---CCceEecCCCCCcEEEEhhhH
Q 027317 158 KVSNYPPCPKPDLIKGLRAHTDAGGII----LLF-QDDEVSG-LQLLK---DDQWVDVPPMKHSIVINLGDQ 220 (225)
Q Consensus 158 r~~~Yp~~~~~~~~~g~~~HtD~g~lT----lL~-q~~~~~G-LqV~~---~g~W~~v~p~~g~~vVnvGD~ 220 (225)
=+|+|++- -+++.|.|-.-+. |.. .- +... +.+.. ++..+.+.-.+|+++|.-|+.
T Consensus 98 LvN~Y~~G------d~mg~H~D~~e~~~~~pI~SvSL-G~~r~F~~~~~~~~~~~~~l~L~sGsllvM~G~s 162 (169)
T TIGR00568 98 LVNRYAPG------ATLSLHQDRDEPDLRAPLLSVSL-GLPAIFLIGGLKRNDPPKRLRLHSGDVVIMGGES 162 (169)
T ss_pred EEEeecCC------CccccccccccccCCCCEEEEeC-CCCEEEEecCCcCCCceEEEEeCCCCEEEECCch
Confidence 38999864 2689999953221 111 11 1222 22221 356889999999999999974
No 77
>PRK07044 aldolase II superfamily protein; Provisional
Probab=27.66 E-value=93 Score=25.49 Aligned_cols=37 Identities=16% Similarity=0.090 Sum_probs=25.7
Q ss_pred CCcEEeCCCCCCCcHHHHHHHHHHHHHhcceEEEEcCCC
Q 027317 3 NFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGI 41 (225)
Q Consensus 3 ~iP~IDl~~l~~~~~~~~~~~l~~A~~~~Gff~l~nhgi 41 (225)
.||.+++..+.. ..+.++.+.+++.+...+.|.|||+
T Consensus 138 ~i~~~~y~~~~~--~~e~~~~va~~l~~~~avLL~nHGv 174 (252)
T PRK07044 138 RLAYHDYEGIAL--DLDEGERLVADLGDKPAMLLRNHGL 174 (252)
T ss_pred CceeeCCCCCcC--CHHHHHHHHHHhccCCEEEECCCCc
Confidence 366666543211 1455688888888889999999995
No 78
>PRK06754 mtnB methylthioribulose-1-phosphate dehydratase; Reviewed
Probab=27.62 E-value=61 Score=25.73 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHH-hcceEEEEcCCC
Q 027317 18 SATMEMINDACE-NWGFFELVNHGI 41 (225)
Q Consensus 18 ~~~~~~l~~A~~-~~Gff~l~nhgi 41 (225)
+++++.+.++++ +...+.+.|||+
T Consensus 148 ~eLa~~v~~~l~~~~~avLl~nHG~ 172 (208)
T PRK06754 148 PTLAEEFAKHIQGDSGAVLIRNHGI 172 (208)
T ss_pred HHHHHHHHHHhccCCcEEEECCCce
Confidence 688899999998 888899999995
No 79
>TIGR00760 araD L-ribulose-5-phosphate 4-epimerase. The homolog to this family from Mycobacterium smegmatis is flanked by putative araB and araA genes, consistent with it also being araD.
Probab=27.46 E-value=99 Score=24.98 Aligned_cols=24 Identities=21% Similarity=0.113 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhc-------ceEEEEcCCC
Q 027317 18 SATMEMINDACENW-------GFFELVNHGI 41 (225)
Q Consensus 18 ~~~~~~l~~A~~~~-------Gff~l~nhgi 41 (225)
.+.++.+.+++.+. -.+.|.|||+
T Consensus 143 ~~~~~~la~~l~~~~~~~~~~~avlL~nHGv 173 (231)
T TIGR00760 143 LETGKVIVETFEKRGIDPAQIPGVLVHSHGP 173 (231)
T ss_pred HhHHHHHHHHHhhccCCcccCCEEEEcCCCc
Confidence 35677788888775 4788999995
No 80
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=27.06 E-value=98 Score=19.12 Aligned_cols=24 Identities=8% Similarity=0.245 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhh
Q 027317 119 VELEKVAEQLLELLCENLGLEEGY 142 (225)
Q Consensus 119 ~~~~~l~~~ll~~l~~~Lgl~~~~ 142 (225)
++-+++...|-+++++.||.|++.
T Consensus 15 eqk~~l~~~it~~l~~~lg~p~~~ 38 (64)
T PRK01964 15 EKIKNLIREVTEAISATLDVPKER 38 (64)
T ss_pred HHHHHHHHHHHHHHHHHhCcChhh
Confidence 455778888999999999999753
No 81
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=26.84 E-value=1.3e+02 Score=18.72 Aligned_cols=38 Identities=21% Similarity=0.394 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhcc--eEEEEc------CCCChHHHHHHHHHHHH
Q 027317 18 SATMEMINDACENWG--FFELVN------HGISHELLDTVQRLTKE 55 (225)
Q Consensus 18 ~~~~~~l~~A~~~~G--ff~l~n------hgi~~~~~~~~~~~~~~ 55 (225)
.+....|.+.++++| .+.++. +||+.+.+..+++..++
T Consensus 23 ~~~l~~la~ia~~yg~~~irlT~~Q~l~l~~v~~~~~~~i~~~L~~ 68 (69)
T PF03460_consen 23 AEQLRALAEIAEKYGDGEIRLTTRQNLQLRGVPEENLPAIFEELKE 68 (69)
T ss_dssp HHHHHHHHHHHHHHSTSEEEEETTSCEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeEEECCCCeEEEeCCCHHHHHHHHHHHHc
Confidence 456677888888876 666654 46888878877776543
No 82
>PRK09220 methylthioribulose-1-phosphate dehydratase; Provisional
Probab=26.82 E-value=72 Score=25.20 Aligned_cols=25 Identities=8% Similarity=0.064 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhcc---eEEEEcCCC
Q 027317 17 RSATMEMINDACENWG---FFELVNHGI 41 (225)
Q Consensus 17 ~~~~~~~l~~A~~~~G---ff~l~nhgi 41 (225)
-++.++.+.+++++.. .+.|.|||+
T Consensus 144 ~~eLa~~v~~~l~~~~~~~avlL~nHGv 171 (204)
T PRK09220 144 IARLAARVAPYLDAQPLRYGYLIRGHGL 171 (204)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEECCCce
Confidence 3688899999999864 899999995
No 83
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=26.64 E-value=34 Score=25.18 Aligned_cols=33 Identities=24% Similarity=0.437 Sum_probs=15.4
Q ss_pred HHHHHHHHhcceEEEE-----------cCCCChHHHHHHHHHHH
Q 027317 22 EMINDACENWGFFELV-----------NHGISHELLDTVQRLTK 54 (225)
Q Consensus 22 ~~l~~A~~~~Gff~l~-----------nhgi~~~~~~~~~~~~~ 54 (225)
+.+.+.|++.|.=-+. -.|++.+..+...+..+
T Consensus 39 ~l~L~~~k~~g~~~lfVi~PvNg~wydytG~~~~~r~~~y~kI~ 82 (130)
T PF04914_consen 39 QLLLDVCKELGIDVLFVIQPVNGKWYDYTGLSKEMRQEYYKKIK 82 (130)
T ss_dssp HHHHHHHHHTT-EEEEEE----HHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCceEEEecCCcHHHHHHhCCCHHHHHHHHHHHH
Confidence 5566666666642211 25666666555555443
No 84
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=26.62 E-value=78 Score=19.44 Aligned_cols=24 Identities=8% Similarity=0.059 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhh
Q 027317 119 VELEKVAEQLLELLCENLGLEEGY 142 (225)
Q Consensus 119 ~~~~~l~~~ll~~l~~~Lgl~~~~ 142 (225)
++-++|+..|.+++++.+|.|++.
T Consensus 15 EqK~~L~~~it~a~~~~~~~p~~~ 38 (60)
T PRK02289 15 EQKNALAREVTEVVSRIAKAPKEA 38 (60)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcce
Confidence 455788999999999999998654
No 85
>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS
Probab=26.56 E-value=1.9e+02 Score=21.94 Aligned_cols=38 Identities=13% Similarity=0.325 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhcceEEEEc-CCCChHHHHHHHHHHH
Q 027317 17 RSATMEMINDACENWGFFELVN-HGISHELLDTVQRLTK 54 (225)
Q Consensus 17 ~~~~~~~l~~A~~~~Gff~l~n-hgi~~~~~~~~~~~~~ 54 (225)
+.+..++|.+.+.++-.++|++ +|++...++++....|
T Consensus 3 K~~~v~~l~e~l~~y~~v~iv~~~gl~~~ql~~iR~~lr 41 (163)
T cd05796 3 KQKLVENIREAVDKYKYIYVFSVDNMRNNKLKDIRQEWK 41 (163)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEecCCCHHHHHHHHHHhc
Confidence 4678899999999988777765 5899887777766554
No 86
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=26.54 E-value=1.1e+02 Score=18.61 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhh
Q 027317 119 VELEKVAEQLLELLCENLGLEEGY 142 (225)
Q Consensus 119 ~~~~~l~~~ll~~l~~~Lgl~~~~ 142 (225)
++-.+++..|..++++.||.+++.
T Consensus 14 e~K~~l~~~it~~~~~~lg~~~~~ 37 (60)
T PF01361_consen 14 EQKRELAEAITDAVVEVLGIPPER 37 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-GGG
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCe
Confidence 455778888999999999998753
No 87
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=26.28 E-value=1.3e+02 Score=17.75 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHH
Q 027317 20 TMEMINDACENWGFFELVNHGISHELLDTVQRLT 53 (225)
Q Consensus 20 ~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~ 53 (225)
.++.+.+++++.||. |++++++.+++.+
T Consensus 20 ~~~~~l~~l~~~g~~------is~~l~~~~L~~~ 47 (48)
T PF11848_consen 20 EVKPLLDRLQQAGFR------ISPKLIEEILRRA 47 (48)
T ss_pred hHHHHHHHHHHcCcc------cCHHHHHHHHHHc
Confidence 445667778888886 6788888777643
No 88
>PF08823 PG_binding_2: Putative peptidoglycan binding domain; InterPro: IPR014927 This entry may be a peptidoglycan binding domain.
Probab=26.21 E-value=1.2e+02 Score=19.94 Aligned_cols=34 Identities=15% Similarity=0.311 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHH
Q 027317 18 SATMEMINDACENWGFFELVNHGISHELLDTVQR 51 (225)
Q Consensus 18 ~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~ 51 (225)
.++++.|.++++..||..=.-||.-.+-.++++.
T Consensus 15 ~~~~~evq~~L~~lGyy~g~~~g~~d~a~~~Al~ 48 (74)
T PF08823_consen 15 GDVAREVQEALKRLGYYKGEADGVWDEATEDALR 48 (74)
T ss_pred HHHHHHHHHHHHHcCCccCCCCCcccHHHHHHHH
Confidence 5788999999999999776667765555554444
No 89
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=25.42 E-value=99 Score=16.83 Aligned_cols=28 Identities=18% Similarity=0.420 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcceEEEEcCCCChHHHHHHHH
Q 027317 21 MEMINDACENWGFFELVNHGISHELLDTVQR 51 (225)
Q Consensus 21 ~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~ 51 (225)
.++|.+.|++.| |.-.|--.++++++.+
T Consensus 6 v~eLk~~l~~~g---L~~~G~K~~Li~Rl~~ 33 (35)
T PF02037_consen 6 VAELKEELKERG---LSTSGKKAELIERLKE 33 (35)
T ss_dssp HHHHHHHHHHTT---S-STSSHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CCCCCCHHHHHHHHHH
Confidence 467888899888 4566666777777654
No 90
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=25.37 E-value=1.2e+02 Score=18.43 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhh
Q 027317 119 VELEKVAEQLLELLCENLGLEEGY 142 (225)
Q Consensus 119 ~~~~~l~~~ll~~l~~~Lgl~~~~ 142 (225)
++-.+++..|.+.+++.+|.|++.
T Consensus 15 eqk~~l~~~it~~l~~~~~~p~~~ 38 (61)
T PRK02220 15 EQLKALVKDVTAAVSKNTGAPAEH 38 (61)
T ss_pred HHHHHHHHHHHHHHHHHhCcChhh
Confidence 455778889999999999998653
No 91
>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.
Probab=25.11 E-value=2.3e+02 Score=21.74 Aligned_cols=39 Identities=10% Similarity=0.271 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhcceEEEEc-CCCChHHHHHHHHHHHH
Q 027317 17 RSATMEMINDACENWGFFELVN-HGISHELLDTVQRLTKE 55 (225)
Q Consensus 17 ~~~~~~~l~~A~~~~Gff~l~n-hgi~~~~~~~~~~~~~~ 55 (225)
+.+..++|.+.+.++-.++|++ .|++...++++....+.
T Consensus 3 K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~ 42 (175)
T cd05795 3 KKEYVEKLTELLKSYPKVLIVDADNVGSKQLQKIRRSLRG 42 (175)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEecCCChHHHHHHHHHhhC
Confidence 4678899999999999888775 58988877777666553
No 92
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=24.64 E-value=73 Score=18.73 Aligned_cols=18 Identities=33% Similarity=0.401 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhcceE
Q 027317 17 RSATMEMINDACENWGFF 34 (225)
Q Consensus 17 ~~~~~~~l~~A~~~~Gff 34 (225)
.++..++|.+++++.||-
T Consensus 27 s~~tr~rI~~~a~~lgY~ 44 (46)
T PF00356_consen 27 SEETRERILEAAEELGYR 44 (46)
T ss_dssp THHHHHHHHHHHHHHTB-
T ss_pred CHHHHHHHHHHHHHHCCC
Confidence 467889999999999983
No 93
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=24.47 E-value=1e+02 Score=18.20 Aligned_cols=41 Identities=20% Similarity=0.139 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHhc
Q 027317 108 DDYRKAMKEFAVELEKVAEQLLELLCENLGLEEGYLKKVFY 148 (225)
Q Consensus 108 ~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~ 148 (225)
+.-...+++++.........-+..||..+|++.......|.
T Consensus 9 ~~~~~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~ 49 (59)
T cd00086 9 PEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQ 49 (59)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 45577888999988888888899999999999766555543
No 94
>PRK06208 hypothetical protein; Provisional
Probab=24.29 E-value=76 Score=26.52 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhcceEEEEcCCC
Q 027317 18 SATMEMINDACENWGFFELVNHGI 41 (225)
Q Consensus 18 ~~~~~~l~~A~~~~Gff~l~nhgi 41 (225)
.+.++.+.+++++...+.|.|||+
T Consensus 177 ~ela~~va~~l~~~~avLL~NHGv 200 (274)
T PRK06208 177 TSEGRRIAAALGTHKAVILQNHGL 200 (274)
T ss_pred hHHHHHHHHHhccCCEEEECCCCc
Confidence 578889999999999999999995
No 95
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=24.25 E-value=1.2e+02 Score=24.69 Aligned_cols=49 Identities=14% Similarity=0.207 Sum_probs=32.9
Q ss_pred CCcEEeCCCCCCCcHHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHH
Q 027317 3 NFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEH 56 (225)
Q Consensus 3 ~iP~IDl~~l~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~f 56 (225)
.+|.+++..+... .....++..++.++|+..+.+-....+ .+...++.|
T Consensus 18 ~~~~~~~~~~~~~--~~~~~~~l~~~~~~g~~~~~~~~~~~~---~~~~~~~~~ 66 (262)
T cd00250 18 ALPVLSFLEVLEL--DSPLGKLLLASAGVGFAELEGAPLDPA---ALLGLAERI 66 (262)
T ss_pred CCCcccHHHHhcC--HHHHHHHHHHHHHhcEEEEeCCCCCHH---HHHHHHHHh
Confidence 4677777665433 346678999999999998888665433 334445554
No 96
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=24.25 E-value=1.1e+02 Score=18.57 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhh
Q 027317 119 VELEKVAEQLLELLCENLGLEEGY 142 (225)
Q Consensus 119 ~~~~~l~~~ll~~l~~~Lgl~~~~ 142 (225)
++-.+|+..|.+++.+.+|.+++.
T Consensus 15 eqk~~l~~~it~~l~~~~~~p~~~ 38 (62)
T PRK00745 15 EQKRKLVEEITRVTVETLGCPPES 38 (62)
T ss_pred HHHHHHHHHHHHHHHHHcCCChhH
Confidence 455788899999999999998754
No 97
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=23.92 E-value=38 Score=17.84 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=11.2
Q ss_pred EEEEcCCCChHHHHHH
Q 027317 34 FELVNHGISHELLDTV 49 (225)
Q Consensus 34 f~l~nhgi~~~~~~~~ 49 (225)
.||..||++.+.+.+-
T Consensus 9 rYV~eh~ls~ee~~~R 24 (28)
T PF12368_consen 9 RYVKEHGLSEEEVAER 24 (28)
T ss_pred hhHHhcCCCHHHHHHH
Confidence 3678899987765543
No 98
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=23.86 E-value=2.4e+02 Score=23.65 Aligned_cols=42 Identities=21% Similarity=0.373 Sum_probs=28.8
Q ss_pred EeCCCCCCCcHHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHH
Q 027317 7 IDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTK 54 (225)
Q Consensus 7 IDl~~l~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~ 54 (225)
|=++.+.+..+.. -.+++++.|||.+.| +|.+++-++.+.+.
T Consensus 4 vIVTGlSGAGKsv----Al~~lEDlGyycvDN--LPp~Llp~~~~~~~ 45 (286)
T COG1660 4 VIVTGLSGAGKSV----ALRVLEDLGYYCVDN--LPPQLLPKLADLML 45 (286)
T ss_pred EEEecCCCCcHHH----HHHHHHhcCeeeecC--CCHHHHHHHHHHHh
Confidence 3345555555322 345788999999988 88888888877554
No 99
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=23.30 E-value=1.3e+02 Score=18.39 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCChh
Q 027317 119 VELEKVAEQLLELLCENLGLEEG 141 (225)
Q Consensus 119 ~~~~~l~~~ll~~l~~~Lgl~~~ 141 (225)
++-.+++..|.++++..||.+++
T Consensus 15 eqK~~l~~~it~~l~~~lg~~~~ 37 (63)
T TIGR00013 15 EQKRQLIEGVTEAMAETLGANLE 37 (63)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcc
Confidence 34567888899999999999865
No 100
>PRK06486 hypothetical protein; Provisional
Probab=23.06 E-value=82 Score=26.07 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhcceEEEEcCCC
Q 027317 18 SATMEMINDACENWGFFELVNHGI 41 (225)
Q Consensus 18 ~~~~~~l~~A~~~~Gff~l~nhgi 41 (225)
.+.++.+.+++.+...+.|.|||+
T Consensus 162 ~ela~~va~al~~~~avLL~nHG~ 185 (262)
T PRK06486 162 AAEGDRIARAMGDADIVFLKNHGV 185 (262)
T ss_pred hhHHHHHHHHhCcCCEEEECCCCC
Confidence 567889999999999999999996
No 101
>PRK00099 rplJ 50S ribosomal protein L10; Reviewed
Probab=23.05 E-value=3.1e+02 Score=20.85 Aligned_cols=39 Identities=5% Similarity=0.141 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhcceEEEEcC-CCChHHHHHHHHHHHH
Q 027317 17 RSATMEMINDACENWGFFELVNH-GISHELLDTVQRLTKE 55 (225)
Q Consensus 17 ~~~~~~~l~~A~~~~Gff~l~nh-gi~~~~~~~~~~~~~~ 55 (225)
+.+..++|.+.++++-+++++++ |++...+.++....+.
T Consensus 6 K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~ 45 (172)
T PRK00099 6 KKEIVAELAEKLKKAQSAVVADYRGLTVAQMTELRKKLRE 45 (172)
T ss_pred HHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHH
Confidence 46677888888888877777665 7887766666655543
No 102
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=22.33 E-value=1.3e+02 Score=17.79 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCChh
Q 027317 119 VELEKVAEQLLELLCENLGLEEG 141 (225)
Q Consensus 119 ~~~~~l~~~ll~~l~~~Lgl~~~ 141 (225)
++-++++..|.+++++.+|.+++
T Consensus 14 eqk~~l~~~i~~~l~~~~g~~~~ 36 (58)
T cd00491 14 EQKRELIERVTEAVSEILGAPEA 36 (58)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcc
Confidence 45577888899999999999864
No 103
>PRK07490 hypothetical protein; Provisional
Probab=21.94 E-value=89 Score=25.50 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhcceEEEEcCCC
Q 027317 18 SATMEMINDACENWGFFELVNHGI 41 (225)
Q Consensus 18 ~~~~~~l~~A~~~~Gff~l~nhgi 41 (225)
.+.++.+.+++.+.-.+.|.|||+
T Consensus 146 ~ela~~v~~~l~~~~avlL~nHG~ 169 (245)
T PRK07490 146 EEEGERLAGLLGDKRRLLMGNHGV 169 (245)
T ss_pred HHHHHHHHHHhCcCCEEEECCCCc
Confidence 578889999999999999999995
No 104
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=21.06 E-value=1.6e+02 Score=15.89 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=20.0
Q ss_pred HHHHHHHHHhcceEEEEcCCCChHHHHHHHH
Q 027317 21 MEMINDACENWGFFELVNHGISHELLDTVQR 51 (225)
Q Consensus 21 ~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~ 51 (225)
.++|.+.|+..| |...|.-.++++++.+
T Consensus 6 ~~~Lk~~l~~~g---l~~~G~K~~Lv~Rl~~ 33 (35)
T smart00513 6 VSELKDELKKRG---LSTSGTKAELVDRLLE 33 (35)
T ss_pred HHHHHHHHHHcC---CCCCCCHHHHHHHHHH
Confidence 467888899888 4556776777777654
No 105
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=21.01 E-value=1.1e+02 Score=19.12 Aligned_cols=40 Identities=20% Similarity=0.405 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHcCCChhhHHHHh
Q 027317 108 DDYRKAMKEFAVELEK----VAEQLLELLCENLGLEEGYLKKVF 147 (225)
Q Consensus 108 ~~f~~~~~~y~~~~~~----l~~~ll~~l~~~Lgl~~~~~~~~~ 147 (225)
+.-.+.|+++++...- ........||..|||++..+.-.+
T Consensus 10 ~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWf 53 (58)
T TIGR01565 10 AEQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWM 53 (58)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeec
Confidence 3446677777776654 777788899999999987654333
No 106
>PF10055 DUF2292: Uncharacterized small protein (DUF2292); InterPro: IPR018743 Members of this family of hypothetical bacterial proteins have no known function.
Probab=20.96 E-value=75 Score=18.03 Aligned_cols=19 Identities=21% Similarity=0.379 Sum_probs=13.2
Q ss_pred ccCCceeEEEeCCCCCceeEe
Q 027317 178 TDAGGIILLFQDDEVSGLQLL 198 (225)
Q Consensus 178 tD~g~lTlL~q~~~~~GLqV~ 198 (225)
-.||++||..||+ -=.|+.
T Consensus 13 i~yGsV~iiiqdG--~vvQIe 31 (38)
T PF10055_consen 13 IRYGSVTIIIQDG--RVVQIE 31 (38)
T ss_pred CCcceEEEEEECC--EEEEEE
Confidence 4589999999972 334554
No 107
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=20.85 E-value=2e+02 Score=23.87 Aligned_cols=40 Identities=15% Similarity=0.046 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHHhcCC
Q 027317 20 TMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKC 60 (225)
Q Consensus 20 ~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp 60 (225)
+.++-.+.+++.||+.|.+- ++.+.++++.+...+.++-+
T Consensus 17 Lt~eqi~~f~~dGyvvl~~v-ls~eev~~lr~~i~~~~~~~ 56 (277)
T TIGR02408 17 LSAKQLQSYERDGFLLLENL-FSDDEVAALLAEVERMTRDP 56 (277)
T ss_pred CCHHHHHHHHHCCEEECccc-CCHHHHHHHHHHHHHHHhcc
Confidence 34556679999999887653 78899999999888887643
No 108
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=20.57 E-value=2.7e+02 Score=23.35 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=27.4
Q ss_pred EEeCCCCCCCcHHHHHHHHHHHHHhcceEEEEcC-CCChHHHHHH
Q 027317 6 IIDLSKLNGDERSATMEMINDACENWGFFELVNH-GISHELLDTV 49 (225)
Q Consensus 6 ~IDl~~l~~~~~~~~~~~l~~A~~~~Gff~l~nh-gi~~~~~~~~ 49 (225)
+|||+. ++.+....+.|.+.|.-.|++. |.+.+.++++
T Consensus 73 vIDFT~------P~~~~~n~~~~~~~gv~~ViGTTG~~~~~~~~l 111 (275)
T TIGR02130 73 CIDYTH------PSAVNDNAAFYGKHGIPFVMGTTGGDREALAKL 111 (275)
T ss_pred EEECCC------hHHHHHHHHHHHHCCCCEEEcCCCCCHHHHHHH
Confidence 478875 4566777888888888888775 7777765555
No 109
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=20.53 E-value=31 Score=20.46 Aligned_cols=20 Identities=25% Similarity=0.498 Sum_probs=10.1
Q ss_pred HHHHHHcCCChhhHHHHhcC
Q 027317 130 ELLCENLGLEEGYLKKVFYG 149 (225)
Q Consensus 130 ~~l~~~Lgl~~~~~~~~~~~ 149 (225)
+-+|+.+|++..++.+...+
T Consensus 13 ~~la~~~gis~~~i~~~~~g 32 (55)
T PF01381_consen 13 KELAEKLGISRSTISRIENG 32 (55)
T ss_dssp HHHHHHHTS-HHHHHHHHTT
T ss_pred HHHHHHhCCCcchhHHHhcC
Confidence 34555555555555555443
No 110
>PF11043 DUF2856: Protein of unknown function (DUF2856); InterPro: IPR020500 This phage protein modulates the activity of the host recBCD nuclease and thus protects the linear double stranded DNA from exonuclease degradation [].
Probab=20.47 E-value=1.6e+02 Score=19.69 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHhH
Q 027317 43 HELLDTVQRLTKEHYGKCMDQRFK 66 (225)
Q Consensus 43 ~~~~~~~~~~~~~fF~lp~e~K~~ 66 (225)
.++++.+...-..|.+||.|.|..
T Consensus 20 sEVL~~~k~N~D~~~aL~~ETKaE 43 (97)
T PF11043_consen 20 SEVLDNIKNNYDAFMALPPETKAE 43 (97)
T ss_pred HHHHHHHHHHHHHHHcCChhhHHH
Confidence 355666667777899999998865
No 111
>KOG0325 consensus Lipoyltransferase [Energy production and conversion; Coenzyme transport and metabolism]
Probab=20.43 E-value=77 Score=25.53 Aligned_cols=28 Identities=29% Similarity=0.670 Sum_probs=19.7
Q ss_pred CcEEeCCCCCCCcHHHHHHHHHHHHHhcc
Q 027317 4 FPIIDLSKLNGDERSATMEMINDACENWG 32 (225)
Q Consensus 4 iP~IDl~~l~~~~~~~~~~~l~~A~~~~G 32 (225)
-|||||+.|.-+. ...++.|.+||..+|
T Consensus 98 ypIidL~~f~~~~-r~~Vs~le~~c~~~~ 125 (226)
T KOG0325|consen 98 YPIIDLRHFGFSA-RCYVSTLEAACPDFG 125 (226)
T ss_pred EEEEEeeccccch-hhHHHHHHhhccccc
Confidence 5999999886333 344577778996655
No 112
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=20.32 E-value=3.1e+02 Score=19.10 Aligned_cols=40 Identities=28% Similarity=0.363 Sum_probs=20.3
Q ss_pred EEeCCCCC--CCcHHHHHHHHHHHHHhcceEEEEcCCCChHHH
Q 027317 6 IIDLSKLN--GDERSATMEMINDACENWGFFELVNHGISHELL 46 (225)
Q Consensus 6 ~IDl~~l~--~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~ 46 (225)
+||++.+. ++.--...-...+.++..| ..+.--|+++++.
T Consensus 48 vIDls~v~~~dS~gl~~L~~~~~~~~~~g-~~~~l~~i~p~v~ 89 (117)
T COG1366 48 VIDLSGVDFMDSAGLGVLVALLKSARLRG-VELVLVGIQPEVA 89 (117)
T ss_pred EEECCCCceechHHHHHHHHHHHHHHhcC-CeEEEEeCCHHHH
Confidence 67777764 2222344455555666665 2333344655543
No 113
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=20.13 E-value=1.3e+02 Score=21.16 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCChh
Q 027317 119 VELEKVAEQLLELLCENLGLEEG 141 (225)
Q Consensus 119 ~~~~~l~~~ll~~l~~~Lgl~~~ 141 (225)
++-.+++..|.+.+++.||++++
T Consensus 72 e~k~~l~~~i~~~l~~~lgi~~~ 94 (116)
T PTZ00397 72 SNNSSIAAAITKILASHLKVKSE 94 (116)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcc
Confidence 34567888899999999999975
Done!