Query 027318
Match_columns 225
No_of_seqs 161 out of 1147
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 13:18:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027318.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027318hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yby_A Translation elongation 100.0 1.5E-70 5.2E-75 474.5 22.2 177 48-224 21-197 (215)
2 1ueb_A EF-P, TT0860, elongatio 100.0 1.1E-67 3.6E-72 447.6 23.9 166 58-224 1-166 (184)
3 3tre_A EF-P, elongation factor 100.0 5.8E-68 2E-72 451.5 18.0 169 56-224 4-172 (191)
4 3oyy_A EF-P, elongation factor 100.0 4.6E-67 1.6E-71 445.9 23.0 167 57-224 3-171 (191)
5 3a5z_B EF-P, elongation factor 100.0 7.9E-68 2.7E-72 450.6 13.6 168 57-224 5-172 (191)
6 1bkb_A Translation initiation 100.0 1.8E-42 6.1E-47 280.2 17.9 126 55-180 5-132 (136)
7 1iz6_A Initiation factor 5A; S 100.0 4.6E-41 1.6E-45 272.8 17.4 122 57-178 5-129 (138)
8 3cpf_A Eukaryotic translation 100.0 1.4E-40 4.7E-45 269.9 14.8 119 56-174 4-126 (138)
9 2eif_A IF-5A, protein (eukaryo 100.0 1.4E-39 4.7E-44 263.5 17.5 120 57-179 9-129 (136)
10 1x6o_A Eukaryotic initiation f 100.0 9.9E-38 3.4E-42 261.9 16.1 118 57-174 29-158 (174)
11 3er0_A Eukaryotic translation 100.0 2.8E-38 9.7E-43 263.7 10.0 119 56-174 28-150 (167)
12 3hks_A EIF-5A-2, eukaryotic tr 100.0 1.6E-36 5.6E-41 253.0 14.8 119 56-174 26-150 (167)
13 1khi_A HEX1; membrane sealing, 99.6 8.5E-15 2.9E-19 122.5 13.6 117 56-178 32-164 (176)
14 3r8s_P 50S ribosomal protein L 68.1 14 0.00048 28.4 6.3 67 58-125 13-88 (114)
15 3v2d_T 50S ribosomal protein L 66.4 15 0.00053 29.4 6.5 67 58-125 16-91 (146)
16 2ftc_K 39S ribosomal protein L 62.8 34 0.0012 25.5 7.5 62 62-124 2-71 (98)
17 1yfb_A Transition state regula 61.2 9.2 0.00031 25.8 3.7 34 143-178 19-52 (59)
18 2jn4_A Hypothetical protein FI 61.0 22 0.00077 26.1 6.0 53 163-222 19-72 (87)
19 1dj7_B Ferredoxin thioredoxin 60.2 1.8 6.2E-05 31.1 -0.0 25 165-189 33-58 (75)
20 2zjr_M 50S ribosomal protein L 54.7 15 0.00053 30.0 4.6 66 59-125 22-96 (166)
21 1ed7_A Chitinase A1, (CHBD-CHI 53.5 4.4 0.00015 25.8 1.0 26 63-88 7-32 (45)
22 1mvg_A Liver basic fatty acid 50.7 55 0.0019 24.8 7.1 45 95-139 46-91 (125)
23 1b56_A Fatty acid binding prot 48.2 66 0.0023 24.6 7.3 44 95-138 51-95 (135)
24 4a1y_A Myelin P2 protein; tran 47.8 39 0.0013 26.0 5.9 44 96-139 51-95 (133)
25 1ifc_A Intestinal fatty acid b 47.5 70 0.0024 24.4 7.3 45 95-139 47-92 (132)
26 1mdc_A Insect fatty acid bindi 47.0 81 0.0028 24.1 7.6 45 95-139 48-93 (132)
27 3ppt_A Sodium-calcium exchange 46.8 76 0.0026 24.3 7.4 44 95-138 48-92 (133)
28 1o8v_A Fatty acid binding prot 46.6 77 0.0026 24.2 7.4 45 95-139 50-95 (134)
29 1k0h_A Gpfii; twisted beta-san 43.4 7.5 0.00026 29.8 1.0 23 61-83 72-94 (117)
30 3q6l_A Fatty acid-binding prot 43.3 83 0.0028 24.9 7.3 44 95-138 69-113 (152)
31 2a0a_A DER F 13; beta barrel, 43.2 99 0.0034 23.5 7.6 45 95-139 48-94 (131)
32 3p6d_A Fatty acid-binding prot 42.5 91 0.0031 24.1 7.3 44 95-138 56-100 (139)
33 2rcq_A CRBP-II, retinol-bindin 42.3 77 0.0026 24.6 6.8 45 95-139 52-99 (141)
34 2qo4_A Liver-basic fatty acid 41.6 55 0.0019 24.8 5.8 45 95-139 47-92 (126)
35 4a60_A Fatty acid-binding prot 41.4 77 0.0026 25.1 6.8 44 95-138 71-115 (154)
36 2k50_A Replication factor A re 41.4 46 0.0016 24.2 5.2 54 56-113 5-63 (115)
37 1vyf_A SM14, 14 kDa fatty acid 40.8 82 0.0028 24.1 6.7 45 95-139 50-96 (135)
38 1crb_A Cellular retinol bindin 39.8 79 0.0027 24.2 6.5 45 95-139 48-95 (134)
39 1fdq_A Fatty acid-binding prot 39.7 65 0.0022 24.5 6.0 45 95-139 48-93 (131)
40 2f9h_A PTS system, IIA compone 38.8 28 0.00097 27.1 3.7 22 62-83 53-74 (129)
41 2l66_A SSO7C4, transcriptional 38.5 14 0.00047 24.0 1.6 32 143-176 9-40 (53)
42 1p6p_A Fatty acid-binding prot 38.4 55 0.0019 24.8 5.3 44 96-139 47-91 (125)
43 1lpj_A Retinol-binding protein 37.9 1.1E+02 0.0038 23.2 7.1 45 95-139 48-95 (133)
44 1ggl_A Protein (cellular retin 37.6 96 0.0033 23.7 6.7 45 95-139 48-95 (134)
45 2f73_A L-FABP, fatty acid-bind 37.2 77 0.0026 24.9 6.2 45 95-139 69-115 (149)
46 1mvf_D MAZE protein, PEMI-like 37.2 28 0.00096 24.2 3.2 32 146-179 13-44 (82)
47 3rsw_A Fatty acid-binding prot 36.0 85 0.0029 25.0 6.3 44 95-138 74-118 (158)
48 2pp6_A Gifsy-2 prophage ATP-bi 35.3 77 0.0026 23.8 5.5 31 65-98 65-95 (102)
49 1ftp_A Muscle fatty acid bindi 34.9 1.2E+02 0.0042 23.0 6.9 45 95-139 50-96 (133)
50 2kca_A Bacteriophage SPP1 comp 33.9 90 0.0031 22.1 5.7 38 62-101 66-104 (109)
51 1eal_A Gastrotropin, ileal lip 33.2 97 0.0033 23.4 6.0 45 95-139 46-92 (127)
52 2g7b_A Cellular retinoic acid- 32.5 97 0.0033 23.7 5.9 45 95-139 49-95 (137)
53 3e0e_A Replication protein A; 32.1 1E+02 0.0035 22.0 5.7 54 58-112 2-57 (97)
54 1at0_A 17-hedgehog; developmen 31.4 77 0.0026 24.3 5.2 30 56-85 84-119 (145)
55 2lba_A BABP protein; ileal bIl 31.0 87 0.003 24.1 5.4 45 95-139 51-97 (136)
56 3vg7_A Fatty acid-binding prot 27.9 1.1E+02 0.0039 23.3 5.6 45 95-139 50-96 (132)
57 1wlf_A PEX1, peroxisome biogen 27.9 61 0.0021 26.1 4.2 41 162-219 135-175 (179)
58 3elx_A Ileal bIle acid-binding 27.9 79 0.0027 24.5 4.7 45 95-139 50-96 (138)
59 1at0_A 17-hedgehog; developmen 27.0 1E+02 0.0035 23.6 5.2 44 56-99 13-61 (145)
60 1g6p_A Cold shock protein TMCS 26.5 1.1E+02 0.0039 20.4 4.8 45 132-176 9-54 (66)
61 3u30_A Ubiquitin, linear DI-ub 26.0 87 0.003 24.3 4.7 90 89-181 16-112 (172)
62 2jv2_A Putative uncharacterize 25.8 57 0.002 23.3 3.2 26 162-196 42-67 (83)
63 2hc8_A PACS, cation-transporti 25.7 59 0.002 24.1 3.5 26 48-73 11-39 (113)
64 4h87_A Kanadaptin; FHA domain 25.0 36 0.0012 25.9 2.2 53 118-170 56-119 (130)
65 3q3y_A HEVB EV93 3C protease; 23.8 60 0.002 27.0 3.4 64 21-95 85-155 (191)
66 2l55_A SILB,silver efflux prot 23.4 1.2E+02 0.0042 21.3 4.6 32 60-91 44-80 (82)
67 1h95_A CSD, Y-box binding prot 22.4 56 0.0019 22.8 2.6 42 134-175 19-66 (79)
68 2kl5_A Uncharacterized protein 22.0 60 0.002 24.8 2.8 26 58-83 1-26 (110)
69 2kcm_A Cold shock domain famil 21.2 2.1E+02 0.0071 19.7 6.5 44 132-175 9-54 (74)
70 3gqs_A Adenylate cyclase-like 21.1 32 0.0011 24.8 1.1 53 117-170 40-92 (106)
71 3o27_A Putative uncharacterize 21.1 75 0.0026 22.2 2.9 33 143-178 23-57 (68)
72 2b0f_A Picornain 3C (protease 20.7 1.5E+02 0.0053 24.1 5.3 64 21-95 83-152 (182)
73 3e59_A Pyoverdine biosynthesis 20.4 55 0.0019 29.4 2.7 36 45-80 277-318 (330)
74 3b08_A Polyubiquitin-C, ubiqui 20.1 1.3E+02 0.0043 22.2 4.4 85 95-183 2-94 (152)
No 1
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}
Probab=100.00 E-value=1.5e-70 Score=474.53 Aligned_cols=177 Identities=24% Similarity=0.432 Sum_probs=157.3
Q ss_pred ccceeeeceeeEEcCCCCCccEEEECCeEEEEEEeEEeeCCCCCeEeeEEEeeCCCCCEEEEEecCCCcEEeeeEeeeEE
Q 027318 48 PWSATQQRAVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSF 127 (225)
Q Consensus 48 ~~~~~~~R~~~i~a~dikkG~~I~~dG~py~Vv~~~h~KpGKG~A~vriklknL~TG~kie~tf~s~dkve~~~ve~k~~ 127 (225)
-.|++|+|++|++++|||+|++|++||+||+|++++|+|||||+|++|+|+|||+||+++|++|+++|++|.|+++++++
T Consensus 21 ~~~~~~~rg~Mi~a~dlKkG~~I~idG~p~~Vve~~hvKPGKG~A~vr~klknl~TG~~~e~tf~s~ekve~a~verr~~ 100 (215)
T 1yby_A 21 STSLYKKAGLMISAGDFKNGVTFELDGQIFQVIEFQHVKPGKGAAFVRTKLKNIVTGATIEKTFNPTDKMPKAHIERKDM 100 (215)
T ss_dssp ----------CEEGGGCCTTCEEEETTEEEEEEEEEEECCC--CCEEEEEEEETTTCCEEEEEECTTCEECBCCCEEEEE
T ss_pred chhhhhhCCEEEEhhhccCCCEEEECCEEEEEEEEEEEcCCCCceEEEEEEEECCCCCEEEEEECCCCEEecceEEEEEE
Confidence 44688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCeEEEecCCCccccccCchhhhhhhhccCCCCEEEEEEECCEEEEEeCCCeEEEEEEEeCCCCCCccCCCCce
Q 027318 128 TCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYR 207 (225)
Q Consensus 128 qyLY~Dgd~~~FMD~EtyEQi~v~~~~lgd~~~yL~eg~~V~v~~~~g~~i~v~lP~~V~l~V~etep~~KGdTat~~~K 207 (225)
||||.|||.|+|||+|||||++|+++.+||+.+||+|||+|+|++|+|+||+|+||++|+|+|+||||++|||||++++|
T Consensus 101 QylY~Dgd~y~FMD~ETyEQi~l~~~~lgd~~~fLkEg~~v~v~~~~g~~i~velP~~V~l~V~eteP~vkGdTa~~~~K 180 (215)
T 1yby_A 101 QYLYNDGDLYYFMDTETFEQLPLGKDKIGDALKFVKENEIVKVLSHKGNVFGIEPPNFVELEVTDTEPGFKGDTATGATK 180 (215)
T ss_dssp EEEEEETTEEEEECTTTCCEEEEEHHHHTTTTTTCCTTCEEEEEEETTEEEEEECCSEEEEEEEEC-------CCSCCEE
T ss_pred EEEEeCCCEEEEccCCCCeeEEecHHHhhhHHhhCCCCCEEEEEEECCEEEEEECCCEEEEEEEEcCCCccccccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCcEEEccccee
Q 027318 208 RALLDNGVTVMVSEICK 224 (225)
Q Consensus 208 ~A~LeTG~~i~VP~FI~ 224 (225)
||+||||++|+||+||+
T Consensus 181 pA~leTG~~v~VP~FI~ 197 (215)
T 1yby_A 181 PAIVETGASIKVPLFVN 197 (215)
T ss_dssp EEEETTSCEEEEETTCC
T ss_pred cEEEeCCcEEEeCCcEe
Confidence 99999999999999997
No 2
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V
Probab=100.00 E-value=1.1e-67 Score=447.57 Aligned_cols=166 Identities=26% Similarity=0.539 Sum_probs=164.7
Q ss_pred eEEcCCCCCccEEEECCeEEEEEEeEEeeCCCCCeEeeEEEeeCCCCCEEEEEecCCCcEEeeeEeeeEEEEEEEeCCeE
Q 027318 58 KVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTA 137 (225)
Q Consensus 58 ~i~a~dikkG~~I~~dG~py~Vv~~~h~KpGKG~A~vriklknL~TG~kie~tf~s~dkve~~~ve~k~~qyLY~Dgd~~ 137 (225)
|+++|+||+|++|++||+||+|++++|+|||||+|++|+|+|||+||+++|++|+++|++|.|+++++++||||.|||.|
T Consensus 1 mi~a~dlkkG~~i~~dg~p~~Vve~~~~KpGKG~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~dgd~~ 80 (184)
T 1ueb_A 1 MISVTDLRPGTKVKMDGGLWECVEYQHQKLGRGGAKVVAKFKNLETGATVERTFNSGEKLEDIYVETRELQYLYPEGEEM 80 (184)
T ss_dssp CEEGGGCCTTCEEEETTEEEEEEEEEEEEETTSCCEEEEEEEESSSSCEEEEEEETTCEEEECCEEEEEEEEEEEETTEE
T ss_pred CcchhhcCCCCEEEECCEEEEEEEEEEeeCCCCceEEEEEEEECCCCCEEEEEECCCCEEEeeeEEEEEEEEEEeCCCEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCccccccCchhhhhhhhccCCCCEEEEEEECCEEEEEeCCCeEEEEEEEeCCCCCCccCCCCceeEEEecCcEE
Q 027318 138 FVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTV 217 (225)
Q Consensus 138 ~FMD~EtyEQi~v~~~~lgd~~~yL~eg~~V~v~~~~g~~i~v~lP~~V~l~V~etep~~KGdTat~~~K~A~LeTG~~i 217 (225)
+|||+|||||++||++.+|++ +||+|||+|+|++|+|+||+|+||++|+|+|+||||++|||||++++|||+||||++|
T Consensus 81 ~FMD~etyeq~~l~~~~lgd~-~~L~eg~~v~v~~~~g~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~letG~~v 159 (184)
T 1ueb_A 81 VFMDLETYEQFAVPRSRVVGA-EFFKEGMTALGDMYEGQPIKVTPPTVVELKVVDTPPGVRGDTVSGGSKPATLETGAVV 159 (184)
T ss_dssp EEEETTTCCEEEEEGGGBTTG-GGCCTTCEEEEEEETTEEEEEECCSEEEEEEEECCSSSCCSSSSCSEEEEEETTSCEE
T ss_pred EEeeCCCceeEEcCHHHcChh-hhcCCCCEEEEEEECCEEEEEECCCEEEEEEEEcCCCCcccccCCCCccEEEcCCCEE
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred Eccccee
Q 027318 218 MVSEICK 224 (225)
Q Consensus 218 ~VP~FI~ 224 (225)
+||+||+
T Consensus 160 ~VP~fi~ 166 (184)
T 1ueb_A 160 QVPLFVE 166 (184)
T ss_dssp EEETTCC
T ss_pred EeCCcCc
Confidence 9999997
No 3
>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii}
Probab=100.00 E-value=5.8e-68 Score=451.50 Aligned_cols=169 Identities=24% Similarity=0.364 Sum_probs=128.6
Q ss_pred eeeEEcCCCCCccEEEECCeEEEEEEeEEeeCCCCCeEeeEEEeeCCCCCEEEEEecCCCcEEeeeEeeeEEEEEEEeCC
Q 027318 56 AVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEND 135 (225)
Q Consensus 56 ~~~i~a~dikkG~~I~~dG~py~Vv~~~h~KpGKG~A~vriklknL~TG~kie~tf~s~dkve~~~ve~k~~qyLY~Dgd 135 (225)
++|+++++||+|++|++||+||+|++++|+|||||+|++|+|+|||+||+++|++|+++|++|.|+++++++||||.||+
T Consensus 4 m~m~~a~dlkkG~~I~~dG~p~~Vve~~~~KpGKG~A~vr~klknl~tG~~~e~tf~s~ekve~~~ver~~~qylY~dgd 83 (191)
T 3tre_A 4 MATHSTNEFRGGLKVMVDGDPCSIIDNEFVKPGKGQAFNRVKFRNLKTGRVLERTFKSGETLPAADVVEVEMQYLYNDGE 83 (191)
T ss_dssp --CEEGGGCCTTCEEEETTEEEEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEETTCEECBCCEEEEEEEEEEECSS
T ss_pred eEEEEHHHCCCCCEEEECCEEEEEEEEEEeeCCCCceEEEEEEEECCCCCEEEEEeCCCCEEEeceEEEEEEEEEEEcCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCccccccCchhhhhhhhccCCCCEEEEEEECCEEEEEeCCCeEEEEEEEeCCCCCCccCCCCceeEEEecCc
Q 027318 136 TAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGV 215 (225)
Q Consensus 136 ~~~FMD~EtyEQi~v~~~~lgd~~~yL~eg~~V~v~~~~g~~i~v~lP~~V~l~V~etep~~KGdTat~~~K~A~LeTG~ 215 (225)
.|+|||+|||||++||++.+||+.+||+|||+|+|.+|+|+||+|+||++|+|+|+||||++|||||++++|||+||||+
T Consensus 84 ~~~FMD~etyEq~~l~~~~lgd~~~~L~eg~~v~v~~~~~~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~letG~ 163 (191)
T 3tre_A 84 FWHFMTSENYEQHAASKEAVAEAKQWLKEEALCMVTMWNGVPLSVEPPNFVELKITETEPGVRGDTATGGTKRAKLETGA 163 (191)
T ss_dssp CEEEEESSSCCEEEECHHHHGGGGGGCCTTCEEEEEEETTEEEEEECCSCC-----------------------------
T ss_pred cEEEccCCchHheecchhHhhhHHhhCCCCCEEEEEEECCEEEEEECCCEEEEEEEEcCCCCcccccCCCcCeEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccccee
Q 027318 216 TVMVSEICK 224 (225)
Q Consensus 216 ~i~VP~FI~ 224 (225)
+|+||+||+
T Consensus 164 ~v~VP~fi~ 172 (191)
T 3tre_A 164 VVRVPLFLN 172 (191)
T ss_dssp ---------
T ss_pred EEEeCCeEc
Confidence 999999997
No 4
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa}
Probab=100.00 E-value=4.6e-67 Score=445.95 Aligned_cols=167 Identities=23% Similarity=0.419 Sum_probs=163.6
Q ss_pred eeEEcCCCCCccEEEECCeEEEEEEeEEeeCCCCCeEeeEEEeeCCCCCEEEEEecCCCcEEeeeEeeeEEEEEEEeCCe
Q 027318 57 VKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDT 136 (225)
Q Consensus 57 ~~i~a~dikkG~~I~~dG~py~Vv~~~h~KpGKG~A~vriklknL~TG~kie~tf~s~dkve~~~ve~k~~qyLY~Dgd~ 136 (225)
+|+++++||+|++|++||+||+|++++|+|||||+|++|+|+|||+||+++|++|+++|++|.|+++++++||||.||+.
T Consensus 3 ~m~~a~dlk~G~~I~~dg~p~~Vve~~~~KpGKG~A~vr~klknl~tG~~~e~tf~s~ekve~~~ver~~~qylY~dgd~ 82 (191)
T 3oyy_A 3 SMKTAQEFRAGQVANINGAPWVIQKAEFNKSGRNAAVVKMKLKNLLTGAGTETVFKADDKLEPIILDRKEVTYSYFADPL 82 (191)
T ss_dssp CCEEGGGCCTTCEEEETTEEEEEEEEEEECCTTSCCEEEEEEEETTTCCEEEEEEETTCEEEECCCEEEEEEEEEECSSS
T ss_pred ccccHHhCCCCCEEEECCEEEEEEEEEeeeCCCCcEEEEEEEEECCCCCEEEEEeCCCCEEEeeeEEEEEEEEEEecCCE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCccccccCchhhhhhhhccCCCCE--EEEEEECCEEEEEeCCCeEEEEEEEeCCCCCCccCCCCceeEEEecC
Q 027318 137 AFVIESETFEQLEVPLDVFGKAGAYLQEGMK--VWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNG 214 (225)
Q Consensus 137 ~~FMD~EtyEQi~v~~~~lgd~~~yL~eg~~--V~v~~~~g~~i~v~lP~~V~l~V~etep~~KGdTat~~~K~A~LeTG 214 (225)
|+||| |||||++||++.+||+.+||+|||+ |+|.+|+|+||+|+||++|+|+|+||||++|||||++++|||+||||
T Consensus 83 ~~FMD-etyEq~~l~~~~lgd~~~~L~eg~~~~v~v~~~~~~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~letG 161 (191)
T 3oyy_A 83 YVFMD-SEFNQYEIEKDDLEGVLTFIEDGMTDICEAVFYNDKVISVELPTTIVRQIAYTEPAVRGDTSGKVMKTARLNNG 161 (191)
T ss_dssp EEEEE-TTCCEEEECGGGCTTTGGGCCTTCCCCEEEEEETTEEEEEECCSEEEEEEEEECCCCSCCCC--CEEEEEETTS
T ss_pred EEEEe-cChhheeCChHHhhhHHhhCcCCCEeEEEEEEECCEEEEEECCCEEEEEEEEcCCCccccccCCCCceEEEeCC
Confidence 99999 9999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred cEEEccccee
Q 027318 215 VTVMVSEICK 224 (225)
Q Consensus 215 ~~i~VP~FI~ 224 (225)
++|+||+||+
T Consensus 162 ~~v~VP~fi~ 171 (191)
T 3oyy_A 162 AELQVSAFCE 171 (191)
T ss_dssp CEEEEETTCC
T ss_pred CEEEeCCeee
Confidence 9999999997
No 5
>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli}
Probab=100.00 E-value=7.9e-68 Score=450.65 Aligned_cols=168 Identities=26% Similarity=0.395 Sum_probs=132.8
Q ss_pred eeEEcCCCCCccEEEECCeEEEEEEeEEeeCCCCCeEeeEEEeeCCCCCEEEEEecCCCcEEeeeEeeeEEEEEEEeCCe
Q 027318 57 VKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDT 136 (225)
Q Consensus 57 ~~i~a~dikkG~~I~~dG~py~Vv~~~h~KpGKG~A~vriklknL~TG~kie~tf~s~dkve~~~ve~k~~qyLY~Dgd~ 136 (225)
+.+++||||+|++|++||+||+|++++|+|||||+|++|+|+|||+||+++|++|+++|++|.|+++++++||||.|||.
T Consensus 5 ~~~~a~dlk~G~~I~~dg~p~~Vve~~~~KpGKG~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~dgd~ 84 (191)
T 3a5z_B 5 ATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGKGQAFARVKLRRLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYNDGEF 84 (191)
T ss_dssp -CEESTTCCTTCEEEETTEEEEEEEEEEECCTTCCCEEEEEEEEGGGTEEEEEEEETTCEEEECCEEEECCEEEEECSSC
T ss_pred ceeeHHHCCCCCEEEECCEEEEEEEEEEEcCCCCcEEEEEEEEECCCCCEEEEEECCCCEEEeeEEEEEEEEEEEeCCCE
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCccccccCchhhhhhhhccCCCCEEEEEEECCEEEEEeCCCeEEEEEEEeCCCCCCccCCCCceeEEEecCcE
Q 027318 137 AFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVT 216 (225)
Q Consensus 137 ~~FMD~EtyEQi~v~~~~lgd~~~yL~eg~~V~v~~~~g~~i~v~lP~~V~l~V~etep~~KGdTat~~~K~A~LeTG~~ 216 (225)
|+|||+|||||++|+++.+||+.+||+|||+|+|++|+|+||+|+||++|+|+|+||||++|||||++++|||+||||++
T Consensus 85 ~~FMD~etyeQ~~l~~~~lgd~~~~l~e~~~v~v~~~~g~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~letG~~ 164 (191)
T 3a5z_B 85 WHFMNNETFEQLSADAKAIGDNAKWLLDQAECIVTLWNGQPISVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTGAV 164 (191)
T ss_dssp EEEECTTTCCEEEECHHHHCTTTTTCCSSEECEEEEETTEEEEEECCSCCCCCCC-------------------------
T ss_pred EEEeeCCCCeEEEccHHHhhhHHhhcCCCCEEEEEEECCEEEEEECCCEEEEEEEEcCCCCcccccCCCCccEEEeCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccccee
Q 027318 217 VMVSEICK 224 (225)
Q Consensus 217 i~VP~FI~ 224 (225)
|+||+||+
T Consensus 165 v~VP~fi~ 172 (191)
T 3a5z_B 165 VKVPLFVQ 172 (191)
T ss_dssp --------
T ss_pred EEeCCcEe
Confidence 99999997
No 6
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=100.00 E-value=1.8e-42 Score=280.23 Aligned_cols=126 Identities=19% Similarity=0.246 Sum_probs=121.6
Q ss_pred ceeeEEcCCCCCccEEEECCeEEEEEEeEEeeCCCC-CeEeeEEEeeCCCCCEEEEEecCCCcEEeeeEeeeEEEEEEEe
Q 027318 55 RAVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRG-GAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 133 (225)
Q Consensus 55 R~~~i~a~dikkG~~I~~dG~py~Vv~~~h~KpGKG-~A~vriklknL~TG~kie~tf~s~dkve~~~ve~k~~qyLY~D 133 (225)
+...+++++||+|++|++||+||+|++++|+||||| +|++|+++|||+||+++|.+|+++|++|.|+++++++||||.|
T Consensus 5 ~t~~i~~~~lrkG~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~tG~~~e~tf~s~~kve~~~ve~~~~qylY~d 84 (136)
T 1bkb_A 5 STKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVPIIEKFTAQILSVS 84 (136)
T ss_dssp CCEEEEGGGCCTTCEEEETTEEEEEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEECCCEEEEEEEEEEC
T ss_pred EEEEEEHHHccCCCEEEECCEEEEEEEEEEecCCCCCceEEEEEEEECCCCCeEEEEEcCCCEeeeceEEEEEEEEEEec
Confidence 356789999999999999999999999999999995 9999999999999999999999999999999999999999999
Q ss_pred CCeEEEecCCCccccccCchh-hhhhhhccCCCCEEEEEEECCEEEEE
Q 027318 134 NDTAFVIESETFEQLEVPLDV-FGKAGAYLQEGMKVWLQLYDGRALSG 180 (225)
Q Consensus 134 gd~~~FMD~EtyEQi~v~~~~-lgd~~~yL~eg~~V~v~~~~g~~i~v 180 (225)
|+.|+|||+|||||++|+.+. +|++.+||+||++|+|++|+|++.-+
T Consensus 85 g~~~~fMD~etyeq~~l~~~~~~gd~~~~l~e~~~v~v~~~~g~~~~~ 132 (136)
T 1bkb_A 85 GDVIQLMDMRDYKTIEVPMKYVEEEAKGRLAPGAEVEVWQILDRYKII 132 (136)
T ss_dssp SSEEEEEETTTCCEEEEEGGGBCHHHHTTCCTTCEEEEEEETTEEEEE
T ss_pred CCEEEEEeCCCCeEEEeccccchhHHHhhCCCCCEEEEEEECCEEEEE
Confidence 999999999999999999999 99999999999999999999998654
No 7
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=100.00 E-value=4.6e-41 Score=272.79 Aligned_cols=122 Identities=25% Similarity=0.318 Sum_probs=118.7
Q ss_pred eeEEcCCCCCccEEEECCeEEEEEEeEEeeCCC-CCeEeeEEEeeCCCCCEEEEEecCCCcEEeeeEeeeEEEEEEEeCC
Q 027318 57 VKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEND 135 (225)
Q Consensus 57 ~~i~a~dikkG~~I~~dG~py~Vv~~~h~KpGK-G~A~vriklknL~TG~kie~tf~s~dkve~~~ve~k~~qyLY~Dgd 135 (225)
..+++++||+|++|++||+||+|++++|+|||| |+|++|+++|||+||+++|.+|+++|++|.|+++++++||||.||+
T Consensus 5 ~~i~a~~lkkG~~i~~~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qylY~dg~ 84 (138)
T 1iz6_A 5 TKVQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVPIIDKKTAQVIAITPD 84 (138)
T ss_dssp EEEEGGGCCTTSEEEETTEEEEEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEECSS
T ss_pred EEEEHHHccCCCEEEECCEEEEEEEEEeecCCCCCceEEEEEEEECCCCCEEEEEecCCCEEeeceEEEEEEEEEEeCCC
Confidence 457899999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCcccccc--CchhhhhhhhccCCCCEEEEEEECCEEE
Q 027318 136 TAFVIESETFEQLEV--PLDVFGKAGAYLQEGMKVWLQLYDGRAL 178 (225)
Q Consensus 136 ~~~FMD~EtyEQi~v--~~~~lgd~~~yL~eg~~V~v~~~~g~~i 178 (225)
.|+|||+|||||++| |.+.+|++.+||+||++|+|+++.|+..
T Consensus 85 ~~~fMD~etyeq~~l~~~~~~lgd~~~~l~e~~~V~v~~~~G~~~ 129 (138)
T 1iz6_A 85 TVQIMDMETYETFEVPIDTGVADEIRDQLKEGINVEYWETLGRIK 129 (138)
T ss_dssp EEEEECTTTCCEEEEEHHHHBCGGGTTTCCTTCEEEEEEETTEEE
T ss_pred EEEEEeCCCCceEEeeCCHHHHHHHHHhCCCCCEEEEEEECCcEE
Confidence 999999999999999 8899999999999999999999999865
No 8
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.4e-40 Score=269.94 Aligned_cols=119 Identities=13% Similarity=0.190 Sum_probs=112.1
Q ss_pred eeeEEcCCCCCccEEEECCeEEEEEEeEEeeCCCC-CeEeeEEEeeCCCCCEEEEEecCCCcEEeeeEeeeEEEEEEEeC
Q 027318 56 AVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRG-GAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEN 134 (225)
Q Consensus 56 ~~~i~a~dikkG~~I~~dG~py~Vv~~~h~KpGKG-~A~vriklknL~TG~kie~tf~s~dkve~~~ve~k~~qyLY~Dg 134 (225)
...+++++||+|++|++||+||+|++++|+||||| +|++|+++|||+||+++|++|+++|++|.|+++++++||||.||
T Consensus 4 t~~i~~~~lrkG~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~TG~~~e~tf~s~~kve~~~v~~~~~qyly~dg 83 (138)
T 3cpf_A 4 TFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQD 83 (138)
T ss_dssp EEEEEGGGCCTTSEEEETTEEEEEEEEEEECC----CCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEEET
T ss_pred cEEEEHHHCcCCCEEEECCEEEEEEEEEeccCCCCccEEEEEEEEECCCCCEEEEEeCCCCEEEeeEEEEEEEEEEEecC
Confidence 35789999999999999999999999999999995 99999999999999999999999999999999999999999999
Q ss_pred CeEEEecCCCccccc--cCchhhhhhh-hccCCCCEEEEEEEC
Q 027318 135 DTAFVIESETFEQLE--VPLDVFGKAG-AYLQEGMKVWLQLYD 174 (225)
Q Consensus 135 d~~~FMD~EtyEQi~--v~~~~lgd~~-~yL~eg~~V~v~~~~ 174 (225)
+.|+|||+|||||++ +|++.+|++. +||+||++|.|.+|.
T Consensus 84 ~~~~fMD~etyeq~~l~l~~~~lgd~~~~~l~eg~~v~V~~~~ 126 (138)
T 3cpf_A 84 GYLSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEEILITVLS 126 (138)
T ss_dssp TEEEEECTTSCEECCSBCCSHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred CEEEEEcCCCCeEeeecCCHHHHHHHHHHHhhCCCEEEEEEEh
Confidence 999999999999999 7999999999 899999999999883
No 9
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=100.00 E-value=1.4e-39 Score=263.46 Aligned_cols=120 Identities=21% Similarity=0.242 Sum_probs=116.0
Q ss_pred eeEEcCCCCCccEEEECCeEEEEEEeEEeeCCC-CCeEeeEEEeeCCCCCEEEEEecCCCcEEeeeEeeeEEEEEEEeCC
Q 027318 57 VKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEND 135 (225)
Q Consensus 57 ~~i~a~dikkG~~I~~dG~py~Vv~~~h~KpGK-G~A~vriklknL~TG~kie~tf~s~dkve~~~ve~k~~qyLY~Dgd 135 (225)
..+++++||+|++|++||+||+|++++|+|||| |+|++|+|+|||+||+++|.+|+++|++|.|+++++++||||.||+
T Consensus 9 ~~i~~~~lr~G~~I~~~g~p~~V~e~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qyly~dg~ 88 (136)
T 2eif_A 9 KQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEVPIIDRRKGQVLAIMGD 88 (136)
T ss_dssp EEEEGGGCCTTSEEEETTEEEEEEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETTSEEEEECEEEEEEEEEEEETT
T ss_pred EEEEHHHCcCCCEEEECCEEEEEEEEEeecCCCCCceEEEEEEEEcCCCCeEEEEecCCCEeccccEeeeEEEEEEecCC
Confidence 447899999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCccccccCchhhhhhhhccCCCCEEEEEEECCEEEE
Q 027318 136 TAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALS 179 (225)
Q Consensus 136 ~~~FMD~EtyEQi~v~~~~lgd~~~yL~eg~~V~v~~~~g~~i~ 179 (225)
.|+|||+|||||++|+.+ |++.+ |+||++|+|++|.|++.-
T Consensus 89 ~~~fMD~etyeq~~l~~~--gd~~~-l~e~~~v~v~~~~G~~~i 129 (136)
T 2eif_A 89 MVQIMDLQTYETLELPIP--EGIEG-LEPGGEVEYIEAVGQYKI 129 (136)
T ss_dssp EEEEEETTTCCEEEEECC--SCCTT-CSTTCEEEEEEETTEEEE
T ss_pred EEEEEeCCCceEEEecCC--Cchhh-CCCCCEEEEEEECCEEEE
Confidence 999999999999999999 89999 999999999999999753
No 10
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A
Probab=100.00 E-value=9.9e-38 Score=261.90 Aligned_cols=118 Identities=20% Similarity=0.327 Sum_probs=111.3
Q ss_pred eeEEcCCCCCccEEEECCeEEEEEEeEEeeCCC-CCeEeeEEEeeCCCCCEEEEEecCCCcEEeeeEeeeEEEEEEEeCC
Q 027318 57 VKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEND 135 (225)
Q Consensus 57 ~~i~a~dikkG~~I~~dG~py~Vv~~~h~KpGK-G~A~vriklknL~TG~kie~tf~s~dkve~~~ve~k~~qyLY~Dgd 135 (225)
..+++++||+|++|++||+||+|++++|+|||| |+|++|+++|||+||+++|.+|++++++|.|+|++++|||||.|||
T Consensus 29 ~~i~a~dlrkG~~I~idG~p~~Vve~~~~KpGKgG~A~vr~k~kni~TG~k~E~tf~s~~kve~~~Ver~~~QyLY~dgd 108 (174)
T 1x6o_A 29 YPLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPSTHNVEVPFVKTYTYSVLDIQAN 108 (174)
T ss_dssp EEEEGGGCCTTCEEEETTEEEEEEEEEECCC----CCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEEECC
T ss_pred EEEEHHHccCCCEEEECCEEEEEEEEEecCCCCCCceEEEEEEEECCCCCEEEEEeCCCCEEEeeEEEEEEEEEEEecCC
Confidence 678999999999999999999999999999999 5999999999999999999999999999999999999999999999
Q ss_pred -------eEEEecCCCcccccc--Cch-hhhhh-hhccCCCCEEEEEEEC
Q 027318 136 -------TAFVIESETFEQLEV--PLD-VFGKA-GAYLQEGMKVWLQLYD 174 (225)
Q Consensus 136 -------~~~FMD~EtyEQi~v--~~~-~lgd~-~~yL~eg~~V~v~~~~ 174 (225)
.|+|||+|||||+.| |.+ .+|++ .+||+||++|.|.+|.
T Consensus 109 ~~~~~~g~~~fMD~etyeq~~l~~p~~~~lgd~i~~~l~eg~~v~V~~~~ 158 (174)
T 1x6o_A 109 EDPSLPAHLSLMDDEGESREDLDMPPDPALATQIKEQFDSGKDVLVVVVS 158 (174)
T ss_dssp SSTTSCCEEEEECTTSCEECCCBCCSCHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred cccccccEEEEEcCCCceEEEeeCCchhhHHHHHHHHhhCCCEEEEEEEe
Confidence 999999999999999 787 89999 8999999999999984
No 11
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-38 Score=263.65 Aligned_cols=119 Identities=16% Similarity=0.272 Sum_probs=114.5
Q ss_pred eeeEEcCCCCCccEEEECCeEEEEEEeEEeeCCC-CCeEeeEEEeeCCCCCEEEEEecCCCcEEeeeEeeeEEEEEEEeC
Q 027318 56 AVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEN 134 (225)
Q Consensus 56 ~~~i~a~dikkG~~I~~dG~py~Vv~~~h~KpGK-G~A~vriklknL~TG~kie~tf~s~dkve~~~ve~k~~qyLY~Dg 134 (225)
..-|++++||+|++|++||+||+|++++|+|||| |+|++|+++|||+||+++|.+|++++++|.|+++++++||||.||
T Consensus 28 t~pi~a~dlrkG~~I~idG~p~~Vve~~~~KpGKHG~A~vr~k~knl~TG~k~E~tf~s~~kve~~~ver~~~QyLY~dg 107 (167)
T 3er0_A 28 TYPMQCSALRKNGFVVIKSRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLSPSTHNMEVPVVKRNEYQLLDIDD 107 (167)
T ss_dssp CEEEETTTCCTTCEEEETTEEEEEEEEEEECCSSSSCCEEEEEEEESSSCCCEEEEEESSSEEEECCCCEEEEECCCCTT
T ss_pred eEEEEHHHccCCCEEEECCEEEEEEEEEEeCCCCcCceEEEEEEEEcCCCCEEEEEEcCCCccccceEEEeeEEEEEEcC
Confidence 3568899999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CeEEEec--CCCccccccCchhhhhhh-hccCCCCEEEEEEEC
Q 027318 135 DTAFVIE--SETFEQLEVPLDVFGKAG-AYLQEGMKVWLQLYD 174 (225)
Q Consensus 135 d~~~FMD--~EtyEQi~v~~~~lgd~~-~yL~eg~~V~v~~~~ 174 (225)
+.|+||| .|||||+.||++.+|++. .||+||++|.|.+|+
T Consensus 108 ~~~~FMD~~~etyeqi~l~~~~lgd~i~~~l~eg~~v~V~~~~ 150 (167)
T 3er0_A 108 GFLSLMNMDGDTKDDVKAPEGELGDSLQTAFDEGKDLMVTIIS 150 (167)
T ss_dssp TTCCCCCSSSCCCSCCCCCCSSHHHHHHHTTSSCCCCEEEEEE
T ss_pred CEEEEEeCCCCeeEEEEcCHHHHHHHHHHHhhCCCEEEEEEEh
Confidence 9999999 899999999999999987 689999999999884
No 12
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}
Probab=100.00 E-value=1.6e-36 Score=252.99 Aligned_cols=119 Identities=14% Similarity=0.175 Sum_probs=110.9
Q ss_pred eeeEEcCCCCCccEEEECCeEEEEEEeEEeeCCC-CCeEeeEEEeeCCCCCEEEEEecCCCcEEeeeEeeeEEEEEEEeC
Q 027318 56 AVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEN 134 (225)
Q Consensus 56 ~~~i~a~dikkG~~I~~dG~py~Vv~~~h~KpGK-G~A~vriklknL~TG~kie~tf~s~dkve~~~ve~k~~qyLY~Dg 134 (225)
..-|++++||+|++|++||+||+|++++|+|||| |+|++|+++|||+||+++|.+|++++++|.|.+++++|||||.|+
T Consensus 26 t~pi~~~dlrkG~~I~idG~P~~Vve~~~~KpGKhG~A~vr~k~knl~TGk~~E~tf~s~~kve~~~ver~~~QyLY~d~ 105 (167)
T 3hks_A 26 TYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITE 105 (167)
T ss_dssp EEEEEGGGCCTTSEEEETTEEEEEEEEEEECSSTTCCCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEECT
T ss_pred cEEEEHHHccCCCEEEECCEEEEEEEEEEeCCCCCCceEEEEEEEEcCCCCEEEEEEcCCCEEEeeeEEEEEEEEEEECC
Confidence 4568899999999999999999999999999999 999999999999999999999999999999999999999999965
Q ss_pred -CeEEEecCCCcccc--ccCch-hhhhhh-hccCCCCEEEEEEEC
Q 027318 135 -DTAFVIESETFEQL--EVPLD-VFGKAG-AYLQEGMKVWLQLYD 174 (225)
Q Consensus 135 -d~~~FMD~EtyEQi--~v~~~-~lgd~~-~yL~eg~~V~v~~~~ 174 (225)
+.|+|||+|||||+ .||.+ .+++++ .||+||++|.|.+|+
T Consensus 106 d~~~~fMD~etyeQ~~l~lp~~~~lg~~i~~~l~eG~~v~V~v~~ 150 (167)
T 3hks_A 106 DGFVSLLTDSGGTKDDLKLPTDDGLTAQMRLGFDEGKDIVVSVMS 150 (167)
T ss_dssp TSBEEEECTTSCEECCCBCCSCHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred CCEEEEEcCCCceEEEEecCchHHHHHHHHHHhhCCCEEEEEEEe
Confidence 68999999999996 55677 888876 899999999988884
No 13
>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5
Probab=99.61 E-value=8.5e-15 Score=122.46 Aligned_cols=117 Identities=14% Similarity=0.139 Sum_probs=98.8
Q ss_pred eeeEEcCCCCCccEEEECCeEEEEEEeEEe-eCCCCCeEeeEEEeeCCCCCEEEEEecCC--------CcEEeeeEeeeE
Q 027318 56 AVKVNASHVRPGNVIEKSGKMYQVIDAEHK-QRGRGGAMMQMELRDIDTGNKVSLRFGTE--------EAVERVFVEDKS 126 (225)
Q Consensus 56 ~~~i~a~dikkG~~I~~dG~py~Vv~~~h~-KpGKG~A~vriklknL~TG~kie~tf~s~--------dkve~~~ve~k~ 126 (225)
..-+++++||+|.+|+++|+||+|++++.+ ||||- ++...||+||+|.|...+++ ++++.|.++ +
T Consensus 32 T~p~q~~~LrkG~yv~IkGrPCKIveiStS~KtGKH----~ivaiDIFTgkK~edi~Pss~p~p~~~~hnm~VPvVk--~ 105 (176)
T 1khi_A 32 TVTIPCHHIRLGDILILQGRPCQVIRISTSAATGQH----RYLGVDLFTKQLHEESSFVSNPAPSVVVQTMLGPVFK--Q 105 (176)
T ss_dssp EEEEEGGGCCTTCEEEETTEEEEEEEEEECTTTCCE----EEEEEETTTCCEEEEECCEECSSTTCCEEEEEEECCE--E
T ss_pred cEEEEhhheeeCCEEEECCeeeEEEEEEccCCCCce----EEEEEEccCCcEeEEeccccCCCcccccceeccceeE--E
Confidence 456889999999999999999999999999 89996 89999999999999999998 899999996 9
Q ss_pred EEEEEEeCCeEEEecCCCcccccc--Cc-hhhhhh-hhccCCCCE---EEEEEECCEEE
Q 027318 127 FTCLYTENDTAFVIESETFEQLEV--PL-DVFGKA-GAYLQEGMK---VWLQLYDGRAL 178 (225)
Q Consensus 127 ~qyLY~Dgd~~~FMD~EtyEQi~v--~~-~~lgd~-~~yL~eg~~---V~v~~~~g~~i 178 (225)
+|.+..+++...+||.++|+...| |. ..|++. ...+.+|.+ |.|+-.-|+-.
T Consensus 106 yQlldI~dg~lsLMd~~G~~k~dl~lp~~~~l~~~i~~~f~~G~~~~~V~v~~amG~e~ 164 (176)
T 1khi_A 106 YRVLDMQDGSIVAMTETGDVKQNLPVIDQSSLWNRLQKAFESGRGSVRVLVVSDHGREM 164 (176)
T ss_dssp EEEEEEETTEEEEECTTCCEEEEEEBCCSTTHHHHHHHHHTTTGGGEEEEEEEETTEEE
T ss_pred EEEEEEcCCeEEEEeCCCCEEeeeEccchHHHHHHHHHHhhCCCceEEEEEEeECCcEE
Confidence 999999999999999988766555 43 224443 345678866 77777777643
No 14
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=68.09 E-value=14 Score=28.45 Aligned_cols=67 Identities=27% Similarity=0.428 Sum_probs=46.6
Q ss_pred eEEcCCCCCccEEEE-----CCeEEEEEEeEEee---CCCCCeEeeEEEeeCCCCCEEEEEecCCCc-EEeeeEeee
Q 027318 58 KVNASHVRPGNVIEK-----SGKMYQVIDAEHKQ---RGRGGAMMQMELRDIDTGNKVSLRFGTEEA-VERVFVEDK 125 (225)
Q Consensus 58 ~i~a~dikkG~~I~~-----dG~py~Vv~~~h~K---pGKG~A~vriklknL~TG~kie~tf~s~dk-ve~~~ve~k 125 (225)
..+..++++||+|.. +|+..++..|+-+- .|+| .--.+.+|++..|--+|.+|+-... ++.+.+-++
T Consensus 13 ~~~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~G-~~~tftvRki~~gvGVEr~fpl~SP~I~~IeV~r~ 88 (114)
T 3r8s_P 13 KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRG-LHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRR 88 (114)
T ss_dssp CSCCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCG-GGCEEEEEEEETTEEEEEEEETTCTTEEEEEEEEC
T ss_pred ccCCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEECCC-CCeEEEEEEecCCccEEEEEecCCCccceEEEEEc
Confidence 356789999999865 46666555555322 3443 2235789999999999999986543 677776665
No 15
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=66.41 E-value=15 Score=29.39 Aligned_cols=67 Identities=18% Similarity=0.331 Sum_probs=46.0
Q ss_pred eEEcCCCCCccEEEE-----CCeEEEEEEeEEee---CCCCCeEeeEEEeeCCCCCEEEEEecCCCc-EEeeeEeee
Q 027318 58 KVNASHVRPGNVIEK-----SGKMYQVIDAEHKQ---RGRGGAMMQMELRDIDTGNKVSLRFGTEEA-VERVFVEDK 125 (225)
Q Consensus 58 ~i~a~dikkG~~I~~-----dG~py~Vv~~~h~K---pGKG~A~vriklknL~TG~kie~tf~s~dk-ve~~~ve~k 125 (225)
..+..+|++||+|.. +|.-.++.-|+-+- .|+|- --.+.+|++..|--+|.+|+-... ++.+.+-++
T Consensus 16 ~~diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~Gl-~~tFtVRkis~gvGVEr~Fpl~SP~I~~IeVvrr 91 (146)
T 3v2d_T 16 RTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGF-NTTFTVRKVSYGVGVERIFPLHSPLIQKIDIVQR 91 (146)
T ss_dssp CCCCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECCGG-GCEEEEEEEETTEEEEEEEETTCTTEEEEEEEEC
T ss_pred hccCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECCCC-CeEEEEEEecCCccEEEEEecCCCccceEEEEec
Confidence 346789999999864 56655555554322 24432 235779999999999999986544 677777665
No 16
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=62.80 E-value=34 Score=25.53 Aligned_cols=62 Identities=18% Similarity=0.198 Sum_probs=40.4
Q ss_pred CCCCCccEEEE----CCeEEEEEEeEEe---eCCCCCeEeeEEEeeCCCCCEEEEEecCCCc-EEeeeEee
Q 027318 62 SHVRPGNVIEK----SGKMYQVIDAEHK---QRGRGGAMMQMELRDIDTGNKVSLRFGTEEA-VERVFVED 124 (225)
Q Consensus 62 ~dikkG~~I~~----dG~py~Vv~~~h~---KpGKG~A~vriklknL~TG~kie~tf~s~dk-ve~~~ve~ 124 (225)
.++++||+|.. .|.-.++..++-+ +.|+|- --...+|++..|--+|.+|+-... ++.+.+-+
T Consensus 2 P~f~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~~G~-~~tftvRki~~gvGVEr~fpl~SP~I~~IeV~r 71 (98)
T 2ftc_K 2 PEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGL-GATFILRNVIEGQGVEICFELYNPRVQEIQVVK 71 (98)
T ss_pred CccCCCCEEEEEEEECCCceEeeeEEEEEEEEECCCC-CcEEEEEEeccCceEEEEEecCCCceeEEEEEE
Confidence 47899998754 3444444445432 234433 346899999999999999976543 55555544
No 17
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=61.19 E-value=9.2 Score=25.82 Aligned_cols=34 Identities=9% Similarity=0.269 Sum_probs=26.5
Q ss_pred CCccccccCchhhhhhhhccCCCCEEEEEEECCEEE
Q 027318 143 ETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRAL 178 (225)
Q Consensus 143 EtyEQi~v~~~~lgd~~~yL~eg~~V~v~~~~g~~i 178 (225)
..--|+.||++.. ++.+ |++|+.+.+...+|+.+
T Consensus 19 ~~kGqItIPkeiR-~~Lg-i~~Gd~l~i~~~~~~Ii 52 (59)
T 1yfb_A 19 DELGRVVIPIELR-RTLG-IAEKDALEIYVDDEKII 52 (59)
T ss_dssp CTTCEEECCHHHH-HHTT-CCTTCEEEEEEETTEEE
T ss_pred CCCCEEEeCHHHH-HHcC-CCCCCEEEEEEECCEEE
Confidence 4678999999875 3333 89999999999888643
No 18
>2jn4_A Hypothetical protein FIXU, NIFT; structural genomics, PSI-2, protein structure initiative, northeast ST genomics consortium, NESG; NMR {Rhodopseudomonas palustris} SCOP: b.173.1.1
Probab=60.99 E-value=22 Score=26.06 Aligned_cols=53 Identities=21% Similarity=0.237 Sum_probs=37.4
Q ss_pred CCCCEEEEEEECCEEEEEeCCCe-EEEEEEEeCCCCCCccCCCCceeEEEecCcEEEcccc
Q 027318 163 QEGMKVWLQLYDGRALSGSIPKR-VACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVSEI 222 (225)
Q Consensus 163 ~eg~~V~v~~~~g~~i~v~lP~~-V~l~V~etep~~KGdTat~~~K~A~LeTG~~i~VP~F 222 (225)
-.||.|.+..-++ -+++-+|.. ++=.|++.| +...-..-++|+||.+..+|..
T Consensus 19 ~~~MKVMIR~~~~-GLs~YVpKKDLEE~VVs~E------~~~~WGG~vtLaNGw~l~lp~l 72 (87)
T 2jn4_A 19 FQGMKVMIRKTAT-GHSAYVAKKDLEELIVEME------NPALWGGKVTLANGWQLELPAM 72 (87)
T ss_dssp ---CCEEEEECSS-CEEEEETTTTEEEEEEEES------SSSSCSSEEEETTSCEEECCCC
T ss_pred ecCCeEEEEeCCC-ceEEEEeCCcchhheeeee------cccccCcEEEECCccEEEeCCC
Confidence 3589999954443 499999976 677788876 2223347899999999999864
No 19
>1dj7_B Ferredoxin thioredoxin reductase: variable chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: b.34.4.3 PDB: 2pu9_B 2pvo_B 2puo_B 2puk_B 2pvd_B 2pvg_B
Probab=60.18 E-value=1.8 Score=31.12 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=18.8
Q ss_pred CCEEEEE-EECCEEEEEeCCCeEEEE
Q 027318 165 GMKVWLQ-LYDGRALSGSIPKRVACT 189 (225)
Q Consensus 165 g~~V~v~-~~~g~~i~v~lP~~V~l~ 189 (225)
|..+++. .|+|+|||.+||-.|.+.
T Consensus 33 GeV~~~v~~wkGr~ISanlP~~V~F~ 58 (75)
T 1dj7_B 33 GEVAAVLTEWQGRPISANLPVLVKFE 58 (75)
T ss_dssp EEEEEECSEETTEECCCSSCEEEEET
T ss_pred EEEEEEEeeccCcEecCCCCEEEEEe
Confidence 3334433 489999999999999874
No 20
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=54.75 E-value=15 Score=30.00 Aligned_cols=66 Identities=21% Similarity=0.328 Sum_probs=45.9
Q ss_pred EEcCCCCCccEEEE-----CCeEEEEEEeEEe---eCCCCCeEeeEEEeeCCCCCEEEEEecCCCc-EEeeeEeee
Q 027318 59 VNASHVRPGNVIEK-----SGKMYQVIDAEHK---QRGRGGAMMQMELRDIDTGNKVSLRFGTEEA-VERVFVEDK 125 (225)
Q Consensus 59 i~a~dikkG~~I~~-----dG~py~Vv~~~h~---KpGKG~A~vriklknL~TG~kie~tf~s~dk-ve~~~ve~k 125 (225)
.+..+|++||+|.. +|.-.++.-|+-+ +.|+|- --.+.+|++..|-=+|.+|+-... ++.+.+-++
T Consensus 22 ~diP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~Gl-~sTFTVRkis~GvGVER~FplhSP~I~kIEVvrr 96 (166)
T 2zjr_M 22 RQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGS-RKSFTVRKISFGEGVERVFPFASPLVNQVTIVER 96 (166)
T ss_dssp CCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGG-GCEEEEEEEETTEEEEEEEETTCTTEEEEEEEEC
T ss_pred cCCCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeCCCC-CcEEEEEEecCCeeEEEEEecCCCccceEEEEec
Confidence 46789999999975 4554444444422 224333 346899999999999999987554 777777765
No 21
>1ed7_A Chitinase A1, (CHBD-CHIA1); twisted beta-sandwich, hydrolase; NMR {Bacillus circulans} SCOP: b.72.2.1
Probab=53.49 E-value=4.4 Score=25.80 Aligned_cols=26 Identities=19% Similarity=0.465 Sum_probs=21.3
Q ss_pred CCCCccEEEECCeEEEEEEeEEeeCC
Q 027318 63 HVRPGNVIEKSGKMYQVIDAEHKQRG 88 (225)
Q Consensus 63 dikkG~~I~~dG~py~Vv~~~h~KpG 88 (225)
.-+.|+++.++|..|+++.-....+|
T Consensus 7 ~Y~~Gd~Vty~G~~Y~c~q~hts~~~ 32 (45)
T 1ed7_A 7 AYTAGQLVTYNGKTYKCLQPHTSLAG 32 (45)
T ss_dssp EECTTCCEEETTEEECBCSCEEECTT
T ss_pred eEcCCCEEEECCeEEEEEecCcCcCC
Confidence 35789999999999999987777543
No 22
>1mvg_A Liver basic fatty acid binding protein; beta-barrel, calycin, ten antiparallel beta strands, helix- turn-helix motif, transport protein; NMR {Gallus gallus} SCOP: b.60.1.2 PDB: 1tvq_A 1tw4_A* 1zry_A 2jn3_A* 2k62_A*
Probab=50.72 E-value=55 Score=24.83 Aligned_cols=45 Identities=11% Similarity=0.201 Sum_probs=37.1
Q ss_pred eEEEeeCCCCCEEEEEecCCCcEEeeeEeeeEEEEEEE-eCCeEEE
Q 027318 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (225)
Q Consensus 95 riklknL~TG~kie~tf~s~dkve~~~ve~k~~qyLY~-Dgd~~~F 139 (225)
...++...+.+..+.+|.-|+.+|.-.++.+.++-++. ||+.++-
T Consensus 46 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 91 (125)
T 1mvg_A 46 DFVVTSKTPRQTVTNSFTLGKEADITTMDGKKLKCTVHLANGKLVT 91 (125)
T ss_dssp EEEEEEECSSCEEEEEEETTEEEEEEETTTEEEEEEEEECSSEEEE
T ss_pred EEEEEEEcCCeEEEEEEECCCcEEEECCCCCEeeEEEEEECCEEEE
Confidence 46666777888999999999999999999888887777 7776654
No 23
>1b56_A Fatty acid binding protein; lipid-binding, fatty acid transport, beta barrel, lipid binding protein; HET: PLM; 2.05A {Homo sapiens} SCOP: b.60.1.2 PDB: 1jjj_A
Probab=48.23 E-value=66 Score=24.64 Aligned_cols=44 Identities=7% Similarity=0.118 Sum_probs=36.4
Q ss_pred eEEEeeCCCCCEEEEEecCCCcEEeeeEeeeEEEEEEE-eCCeEE
Q 027318 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAF 138 (225)
Q Consensus 95 riklknL~TG~kie~tf~s~dkve~~~ve~k~~qyLY~-Dgd~~~ 138 (225)
+..++...+.+..+.+|+-|+.+|.-.++.+.++-++. ||+.++
T Consensus 51 ~~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv 95 (135)
T 1b56_A 51 NLTIKTESTLKTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALV 95 (135)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEEETTEEE
T ss_pred EEEEEEEcCCceEEEEEECCCcEEEECCCCCeEEEEEEEECCEEE
Confidence 45667778888999999999999999999888877776 777654
No 24
>4a1y_A Myelin P2 protein; transport; HET: PLM; 1.20A {Homo sapiens} PDB: 2wut_A* 4a1h_A* 1pmp_A* 1yiv_A*
Probab=47.78 E-value=39 Score=26.02 Aligned_cols=44 Identities=11% Similarity=0.189 Sum_probs=34.5
Q ss_pred EEEeeCCCCCEEEEEecCCCcEEeeeEeeeEEEEEEE-eCCeEEE
Q 027318 96 MELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (225)
Q Consensus 96 iklknL~TG~kie~tf~s~dkve~~~ve~k~~qyLY~-Dgd~~~F 139 (225)
+.++...+.+..+.+|+-|+.+|+-.++.+.++-++. ||+.++.
T Consensus 51 ~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 95 (133)
T 4a1y_A 51 ITIRTESTFKNTEISFQLGQEFEETTADNRKTKSIVTLQRGSLNQ 95 (133)
T ss_dssp EEEEEEETTEEEEEEECTTBCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEecCCccEEEEEEcCCcEEEEcCCCCEEEEEEEEcCCEEEE
Confidence 4445556677888899999999999999988887776 7777643
No 25
>1ifc_A Intestinal fatty acid binding protein; lipid-binding protein; 1.19A {Rattus norvegicus} SCOP: b.60.1.2 PDB: 1ael_A 1icm_A* 1ifb_A 1ure_A* 2ifb_A* 3akn_A* 1icn_A* 1t8v_A 1dc9_A 1a57_A 1kzx_A 1kzw_A 3akm_A* 3ifb_A 1sa8_A
Probab=47.51 E-value=70 Score=24.42 Aligned_cols=45 Identities=9% Similarity=0.171 Sum_probs=36.0
Q ss_pred eEEEeeCCCCCEEEEEecCCCcEEeeeEeeeEEEEEEE-eCCeEEE
Q 027318 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (225)
Q Consensus 95 riklknL~TG~kie~tf~s~dkve~~~ve~k~~qyLY~-Dgd~~~F 139 (225)
.+.++...+.+..+.+|.-|+.+|.-.++.+.++-++. ||+.++-
T Consensus 47 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 92 (132)
T 1ifc_A 47 KFTVKESSNFRNIDVVFELGVDFAYSLADGTELTGTWTMEGNKLVG 92 (132)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCeEEEEEEECCCcEEEECCCCCEEEEEEEEECCEEEE
Confidence 45666777788899999999999999999888877776 7776543
No 26
>1mdc_A Insect fatty acid binding protein; HET: PLM; 1.75A {Manduca sexta} SCOP: b.60.1.2
Probab=46.96 E-value=81 Score=24.07 Aligned_cols=45 Identities=13% Similarity=0.221 Sum_probs=36.8
Q ss_pred eEEEeeCCCCCEEEEEecCCCcEEeeeEeeeEEEEEEE-eCCeEEE
Q 027318 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (225)
Q Consensus 95 riklknL~TG~kie~tf~s~dkve~~~ve~k~~qyLY~-Dgd~~~F 139 (225)
.+.++...+.+..+.+|+-|+.+|.-.++.+.++-++. ||+.++-
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 93 (132)
T 1mdc_A 48 SYSNTSTGGGGAKTVSFKSGVEFDDVIGAGDSVKSMYTVDGNVVTH 93 (132)
T ss_dssp EEEEEEESTTCCEEEEECTTCCEEEEETTTEEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCceeEEEEeCCCcEEEECCCCCEEEEEEEEECCEEEE
Confidence 45666777888899999999999999999888887776 7776554
No 27
>3ppt_A Sodium-calcium exchanger; fatty acid transporter, lipid binding proteins, squid nerve, regulatory factor, beta-sandwich, fatty acid; HET: PAM; 1.28A {Loligo pealei} SCOP: b.60.1.0 PDB: 3pp6_A*
Probab=46.84 E-value=76 Score=24.32 Aligned_cols=44 Identities=5% Similarity=0.146 Sum_probs=35.8
Q ss_pred eEEEeeCCCCCEEEEEecCCCcEEeeeEeeeEEEEEEE-eCCeEE
Q 027318 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAF 138 (225)
Q Consensus 95 riklknL~TG~kie~tf~s~dkve~~~ve~k~~qyLY~-Dgd~~~ 138 (225)
.+.++...+.+..+.+|+-|+.+|.-.++.+.++-++. ||+.++
T Consensus 48 ~~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv 92 (133)
T 3ppt_A 48 SWSIKTSTTFKTTDISFTIGQEFDETTGDGRKIKTTCKIDGNAMI 92 (133)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTCCEEEEEEEEETTEEE
T ss_pred EEEEEEEeCCccEEEEEECCCcEEeEcCCCCEEEEEEEEECCEEE
Confidence 56677777888899999999999999888888877765 777654
No 28
>1o8v_A Fatty acid binding protein homolog; lipid binding protein, hydatid disease, fatty-acid transport; HET: PLM; 1.60A {Echinococcus granulosus} SCOP: b.60.1.2
Probab=46.62 E-value=77 Score=24.24 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=37.1
Q ss_pred eEEEeeCCCCCEEEEEecCCCcEEeeeEeeeEEEEEEE-eCCeEEE
Q 027318 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (225)
Q Consensus 95 riklknL~TG~kie~tf~s~dkve~~~ve~k~~qyLY~-Dgd~~~F 139 (225)
.+.++...+.+..+.+|+-|+.+|.-.++.+.++-++. ||+.++-
T Consensus 50 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 95 (134)
T 1o8v_A 50 KYKMRSESTFKTTECSFKLGEKFKEVTPDSREVASLITVENGVMKH 95 (134)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCceEEEEEECCCcEEEECCCCCEEEEEEEEECCEEEE
Confidence 46677778888999999999999999999888877776 7776544
No 29
>1k0h_A Gpfii; twisted beta-sandwich, viral protein; NMR {Enterobacteria phage lambda} SCOP: b.106.1.2 PDB: 2kx4_A
Probab=43.36 E-value=7.5 Score=29.75 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=20.1
Q ss_pred cCCCCCccEEEECCeEEEEEEeE
Q 027318 61 ASHVRPGNVIEKSGKMYQVIDAE 83 (225)
Q Consensus 61 a~dikkG~~I~~dG~py~Vv~~~ 83 (225)
+..+++|+.|.++|+.|.|.+++
T Consensus 72 ~~~~~~gD~v~i~g~~y~V~~v~ 94 (117)
T 1k0h_A 72 VRQLRRGDTLTIGEENFWVDRVS 94 (117)
T ss_dssp TTTCCSSCEEEETTTCEEBCCCC
T ss_pred cCCCCCCCEEEECCeEEEEeeec
Confidence 46789999999999999998844
No 30
>3q6l_A Fatty acid-binding protein, adipocyte; lipid chaperone, lipid binding protein; 1.40A {Homo sapiens} PDB: 2q9s_A* 2qm9_A*
Probab=43.35 E-value=83 Score=24.85 Aligned_cols=44 Identities=11% Similarity=0.200 Sum_probs=35.9
Q ss_pred eEEEeeCCCCCEEEEEecCCCcEEeeeEeeeEEEEEEE-eCCeEE
Q 027318 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAF 138 (225)
Q Consensus 95 riklknL~TG~kie~tf~s~dkve~~~ve~k~~qyLY~-Dgd~~~ 138 (225)
.+.++...+.+..+.+|.-|+.+|+-..+.+.++-++. ||+.++
T Consensus 69 ~~tikt~st~kt~~~~F~lGeEfee~t~dGrk~Ks~vt~eg~kLv 113 (152)
T 3q6l_A 69 VITIKSESTFKNTEISFILGQEFDEVTADDRKVKSTITLDGGVLV 113 (152)
T ss_dssp EEEEEEECSSCCEEEEECTTCCEEEECTTCCEEEEEEEEETTEEE
T ss_pred EEEEEEEeccccEEEEEEcCCcEEeecCCCCEEEEEEEEECCEEE
Confidence 46667777788899999999999999888888877776 777664
No 31
>2a0a_A DER F 13; beta barrel, helix, allergen; NMR {Dermatophagoides farinae} SCOP: b.60.1.2
Probab=43.25 E-value=99 Score=23.48 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=36.9
Q ss_pred eEEEeeCCCCCEEEEEecCCCcEEeeeEeeeEEEEEEE-eC-CeEEE
Q 027318 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-EN-DTAFV 139 (225)
Q Consensus 95 riklknL~TG~kie~tf~s~dkve~~~ve~k~~qyLY~-Dg-d~~~F 139 (225)
.+.++...+.+..+.+|+-|+.+|.-.++.+.++-++. || +.++-
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~~kLv~ 94 (131)
T 2a0a_A 48 QYIFRSLSTFKNTEAKFKLGEEFEEDRADGKRVKTVIQKEGDNKFVQ 94 (131)
T ss_dssp CEEEEECCTTSCEEEEECSSCCEEEEETTTEEEEEEEEEETTTEEEE
T ss_pred EEEEEEEcCCeeEEEEEECCCcEEEECCCCCEEEEEEEEeCCCEEEE
Confidence 46677778888999999999999999999888877776 77 66554
No 32
>3p6d_A Fatty acid-binding protein, adipocyte; lipocalin, beta barrel, lipid BI protein; HET: ZGB; 1.06A {Homo sapiens} SCOP: b.60.1.2 PDB: 3p6c_A* 3p6e_A* 3p6f_A* 3p6g_A* 3p6h_A* 3rzy_A 2hnx_A* 3fr4_A* 2nnq_A* 1tow_A* 1tou_A* 3fr2_A* 3fr5_A* 1adl_A* 1alb_A 1lib_A 1lic_A* 1lid_A* 1lie_A* 1lif_A* ...
Probab=42.45 E-value=91 Score=24.11 Aligned_cols=44 Identities=11% Similarity=0.200 Sum_probs=35.5
Q ss_pred eEEEeeCCCCCEEEEEecCCCcEEeeeEeeeEEEEEEE-eCCeEE
Q 027318 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAF 138 (225)
Q Consensus 95 riklknL~TG~kie~tf~s~dkve~~~ve~k~~qyLY~-Dgd~~~ 138 (225)
.+.++...+.+..+.+|.-|+.+|.-..+.+.++-++. ||+.++
T Consensus 56 ~~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv 100 (139)
T 3p6d_A 56 VITIKSESTFKNTEISFILGQEFDEVTADDRKVKSTITLDGGVLV 100 (139)
T ss_dssp EEEEEEECSSCCEEEEECTTCCEEEECTTCCEEEEEEEEETTEEE
T ss_pred EEEEEEEeccccEEEEEEcCCcEEeecCCCCEEEEEEEEECCEEE
Confidence 45666777788899999999999998888888877776 777654
No 33
>2rcq_A CRBP-II, retinol-binding protein II, cellular; cellular retinol binding protein II, lipid-binding protein, X-RAY, cytoplasm, transport, vitamin A; HET: TLA; 1.20A {Homo sapiens} PDB: 2rct_A* 1b4m_A 1eii_A* 1opa_A 1opb_A* 1kqw_A* 1kqx_A
Probab=42.29 E-value=77 Score=24.57 Aligned_cols=45 Identities=13% Similarity=0.216 Sum_probs=35.6
Q ss_pred eEEEeeCCCCCEEEEEecCCCcEEe--eeEeeeEEEEEEE-eCCeEEE
Q 027318 95 QMELRDIDTGNKVSLRFGTEEAVER--VFVEDKSFTCLYT-ENDTAFV 139 (225)
Q Consensus 95 riklknL~TG~kie~tf~s~dkve~--~~ve~k~~qyLY~-Dgd~~~F 139 (225)
.+.++...+.+..+.+|+-|+.+|. -.++.+.++-++. ||+.++-
T Consensus 52 ~~tikt~s~~k~~~~~F~lGeEfee~~~t~dgrk~ks~vt~eg~kLv~ 99 (141)
T 2rcq_A 52 NFKTKTTSTFRNYDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVC 99 (141)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCeEEEEEEECCCeEEeeeecCCCCEEEEEEEEeCCEEEE
Confidence 4556667778899999999999999 8888887777666 7776654
No 34
>2qo4_A Liver-basic fatty acid binding protein; liver bIle acid-binding protein, BABP, fatty acid-binding PR FABP, cholic acid cholate, bIle acid; HET: CHD; 1.50A {Danio rerio} PDB: 2qo6_A* 2qo5_A* 2ftb_A* 2ft9_A*
Probab=41.63 E-value=55 Score=24.82 Aligned_cols=45 Identities=13% Similarity=0.319 Sum_probs=35.7
Q ss_pred eEEEeeCCCCCEEEEEecCCCcEEeeeEeeeEEEEEEE-eCCeEEE
Q 027318 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (225)
Q Consensus 95 riklknL~TG~kie~tf~s~dkve~~~ve~k~~qyLY~-Dgd~~~F 139 (225)
...++...+.+..+.+|+-|+.+|.-.++.+.++-++. ||+.++-
T Consensus 47 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~kLv~ 92 (126)
T 2qo4_A 47 DFTITSKTPGKTVTNSFTIGKEAEITTMDGKKLKCIVKLDGGKLVC 92 (126)
T ss_dssp EEEEEEEETTEEEEEEEETTBEEEEECTTSCEEEEECEEETTEEEE
T ss_pred EEEEEEEcCCceEEEEeeCCCcEEEECCCCCEeEEEEEEECCEEEE
Confidence 34555666777889999999999999999888877776 7776655
No 35
>4a60_A Fatty acid-binding protein 9 testis lipid-binding protein, TLBP, testis-type fatty...; transport protein; 1.53A {Homo sapiens} PDB: 3nr3_A*
Probab=41.40 E-value=77 Score=25.15 Aligned_cols=44 Identities=16% Similarity=0.267 Sum_probs=35.2
Q ss_pred eEEEeeCCCCCEEEEEecCCCcEEeeeEeeeEEEEEEE-eCCeEE
Q 027318 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAF 138 (225)
Q Consensus 95 riklknL~TG~kie~tf~s~dkve~~~ve~k~~qyLY~-Dgd~~~ 138 (225)
.+.++...+.+..+.+|.-|+.+|+-..+.+.++-++. ||+.++
T Consensus 71 ~~tikt~st~kt~~~~F~lGeEfee~t~DGrk~Ks~vt~eg~kLv 115 (154)
T 4a60_A 71 MMTIRTESSFQDTKISFKLGEEFDETTADNRKVKSTITLENGSMI 115 (154)
T ss_dssp EEEEEEEETTEEEEEEECTTCCEEEECTTCCEEEEEEEEETTEEE
T ss_pred EEEEEEEcCCceEEEEEECCCcEEeEcCCCCEEEEEEEEECCEEE
Confidence 35566667778889999999999999888888877776 777664
No 36
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=41.35 E-value=46 Score=24.21 Aligned_cols=54 Identities=17% Similarity=0.234 Sum_probs=33.7
Q ss_pred eeeEEcCCCCCccEEEECCeEEEEEEeEEee---CCCC--CeEeeEEEeeCCCCCEEEEEecC
Q 027318 56 AVKVNASHVRPGNVIEKSGKMYQVIDAEHKQ---RGRG--GAMMQMELRDIDTGNKVSLRFGT 113 (225)
Q Consensus 56 ~~~i~a~dikkG~~I~~dG~py~Vv~~~h~K---pGKG--~A~vriklknL~TG~kie~tf~s 113 (225)
..+..+++|++|+.+.. .++|.+..-.+ ..+| ..+..+.+.| .||...-.-|..
T Consensus 5 ~~~~~I~~L~~g~~v~i---~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D-~TG~I~~t~w~~ 63 (115)
T 2k50_A 5 HRMDTISKLEEGAETPV---TGRVMKISSPRTFTTRKGREGKLANVIIAD-DTGELRAVFWTE 63 (115)
T ss_dssp TCCCCTTTCCTTCEEEE---EEEEEEECCCEECCCTTSSCCEEEEEEEEE-TTEEEEEEEETT
T ss_pred cceEEHHHCCCCCEeEE---EEEEEECCCceEEEcCCCCEEEEEEEEEEe-CCCeEEEEEeCc
Confidence 34566899999998754 56666663222 2235 5677888888 677444334443
No 37
>1vyf_A SM14, 14 kDa fatty acid binding protein; transport protein; HET: OLA; 1.85A {Schistosoma mansoni} SCOP: b.60.1.2 PDB: 1vyg_A* 2poa_A
Probab=40.83 E-value=82 Score=24.11 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=34.8
Q ss_pred eEEEeeCCCCCEEEEEecCCCcEEeeeEeeeEEEEEEE--eCCeEEE
Q 027318 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT--ENDTAFV 139 (225)
Q Consensus 95 riklknL~TG~kie~tf~s~dkve~~~ve~k~~qyLY~--Dgd~~~F 139 (225)
.+.++...+.+..+.+|+-|+.+|.-.++.+.++-++. ||+.++-
T Consensus 50 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~~eg~kLv~ 96 (135)
T 1vyf_A 50 KMTMLTESTFKNLSCTFKFGEEFDEKTSDGRNVKSVVEKNSESKLTQ 96 (135)
T ss_dssp EEEEEEECSSCCEEEEECTTCCEEEECTTSCEEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCceEEEEEECCCCEEEECCCCCEEEEEEEEccCCEEEE
Confidence 34566667778889999999999998888877766665 7776544
No 38
>1crb_A Cellular retinol binding protein; cellular lipophilic transport protein; HET: RTL; 2.10A {Rattus rattus} SCOP: b.60.1.2 PDB: 1mx7_A 1mx8_A* 1jbh_A 1kgl_A*
Probab=39.84 E-value=79 Score=24.17 Aligned_cols=45 Identities=16% Similarity=0.235 Sum_probs=36.2
Q ss_pred eEEEeeCCCCCEEEEEecCCCcEEe--eeEeeeEEEEEEE-eCCeEEE
Q 027318 95 QMELRDIDTGNKVSLRFGTEEAVER--VFVEDKSFTCLYT-ENDTAFV 139 (225)
Q Consensus 95 riklknL~TG~kie~tf~s~dkve~--~~ve~k~~qyLY~-Dgd~~~F 139 (225)
.+.++...+.+..+.+|+-|+.+|. -.++.+.++-++. ||+.++-
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~~~t~dgrk~ks~vt~eg~kLv~ 95 (134)
T 1crb_A 48 HMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMTTVSWDGDKLQC 95 (134)
T ss_dssp EEEEEEECSSCCEEEEEETTCCEEEECTTTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEecCCceEEEEEeCCCeeeeeeecCCCCEEEEEEEEECCEEEE
Confidence 4566777888899999999999999 8888888877766 7776654
No 39
>1fdq_A Fatty acid-binding protein, brain; omega-3, long chain poly unsaturated fatty acid, lipid binding protein; HET: HXA; 2.10A {Homo sapiens} SCOP: b.60.1.2 PDB: 1fe3_A* 1jjx_A
Probab=39.69 E-value=65 Score=24.51 Aligned_cols=45 Identities=13% Similarity=0.296 Sum_probs=35.8
Q ss_pred eEEEeeCCCCCEEEEEecCCCcEEeeeEeeeEEEEEEE-eCCeEEE
Q 027318 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (225)
Q Consensus 95 riklknL~TG~kie~tf~s~dkve~~~ve~k~~qyLY~-Dgd~~~F 139 (225)
+..++...+.+..+.+|+-|+.+|.-.++.+.++-++. ||+.++-
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~kLv~ 93 (131)
T 1fdq_A 48 KVVIRTLSTFKNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVH 93 (131)
T ss_dssp EEEEEEECSSCBCCEEECTTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEecCCccEEEEEeCCCceEEECCCCCEEEEEEEEECCEEEE
Confidence 45566677778888999999999999999888877776 7776554
No 40
>2f9h_A PTS system, IIA component; alpha-beta structure, beta-barrel, dimer, structural genomic protein structure initiative; 1.57A {Enterococcus faecalis} SCOP: b.161.1.1
Probab=38.76 E-value=28 Score=27.10 Aligned_cols=22 Identities=9% Similarity=0.253 Sum_probs=20.2
Q ss_pred CCCCCccEEEECCeEEEEEEeE
Q 027318 62 SHVRPGNVIEKSGKMYQVIDAE 83 (225)
Q Consensus 62 ~dikkG~~I~~dG~py~Vv~~~ 83 (225)
.+|++|+.+.++++-|.|..+-
T Consensus 53 ~~i~~Gd~l~i~~~~Y~ItaVG 74 (129)
T 2f9h_A 53 VTLAEGDHLKIGDTNYTITKVG 74 (129)
T ss_dssp CCCCTTCEEEETTEEEEEEEEC
T ss_pred CCcCCCCEEEECCEEEEEEEEh
Confidence 5899999999999999998874
No 41
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=38.47 E-value=14 Score=23.96 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=24.5
Q ss_pred CCccccccCchhhhhhhhccCCCCEEEEEEECCE
Q 027318 143 ETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGR 176 (225)
Q Consensus 143 EtyEQi~v~~~~lgd~~~yL~eg~~V~v~~~~g~ 176 (225)
..--|+.||++... +.. |++|+.+.+...+|.
T Consensus 9 ~~kgqi~IPk~ir~-~lg-i~~Gd~v~i~~~~~~ 40 (53)
T 2l66_A 9 SRNYQVTIPAKVRQ-KFQ-IKEGDLVKVTFDESE 40 (53)
T ss_dssp CSSSCBCCCHHHHH-HSC-CCTTCEEEEEECSSS
T ss_pred CCCCEEEeCHHHHH-HcC-cCCCCEEEEEEECCE
Confidence 34679999998753 333 799999999887775
No 42
>1p6p_A Fatty acid-binding protein, liver; beta barrel, lipid binding protein; 2.50A {Bufo arenarum} SCOP: b.60.1.2
Probab=38.40 E-value=55 Score=24.77 Aligned_cols=44 Identities=11% Similarity=0.083 Sum_probs=34.6
Q ss_pred EEEeeCCCCCEEEEEecCCCcEEeeeEeeeEEEEEEE-eCCeEEE
Q 027318 96 MELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (225)
Q Consensus 96 iklknL~TG~kie~tf~s~dkve~~~ve~k~~qyLY~-Dgd~~~F 139 (225)
+.++...+.+..+.+|.-|+.+|.-.++.+.++-++. ||+.++-
T Consensus 47 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 91 (125)
T 1p6p_A 47 FVVTSKTPKQTHSNSFTVGKESEITSMDGKKIKVTVQLEGGKLIC 91 (125)
T ss_dssp EEEEEEETTEEEEEEEETTSCEEECTTTSCCEEEEEEECSSEEEE
T ss_pred EEEEEEcCCeEEEEEEECCCcEEEEcCCCCEEEEEEEEECCEEEE
Confidence 4455556677888999999999999999888887777 7776554
No 43
>1lpj_A Retinol-binding protein IV, cellular; cellular retinol-binding protein, CRBP, vitamin A, ILBPS, transport protein; 2.00A {Homo sapiens} SCOP: b.60.1.2
Probab=37.87 E-value=1.1e+02 Score=23.24 Aligned_cols=45 Identities=11% Similarity=0.197 Sum_probs=35.2
Q ss_pred eEEEeeCCCCCEEEEEecCCCcEEeee--EeeeEEEEEEE-eCCeEEE
Q 027318 95 QMELRDIDTGNKVSLRFGTEEAVERVF--VEDKSFTCLYT-ENDTAFV 139 (225)
Q Consensus 95 riklknL~TG~kie~tf~s~dkve~~~--ve~k~~qyLY~-Dgd~~~F 139 (225)
++.++...+.+..+.+|+-|+.+|.-. ++.+.++-++. ||+.++-
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeefee~t~~~dgrk~ks~~t~eg~kLv~ 95 (133)
T 1lpj_A 48 SFTIHTNSSLRNYFVKFKVGEEFDEDNRGLDNRKCKSLVIWDNDRLTC 95 (133)
T ss_dssp EEEEEEECSSCCEEEEEETTCCEEEECTTTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEeCCceeEEEeeCCCceEEEccCCCCCEEEEEEEEECCEEEE
Confidence 455667778888999999999999987 88777776666 7776654
No 44
>1ggl_A Protein (cellular retinol-binding protein III); carrier, transport protein; 2.31A {Homo sapiens} SCOP: b.60.1.2
Probab=37.60 E-value=96 Score=23.71 Aligned_cols=45 Identities=18% Similarity=0.317 Sum_probs=35.8
Q ss_pred eEEEeeCCCCCEEEEEecCCCcEEeee--EeeeEEEEEEE-eCCeEEE
Q 027318 95 QMELRDIDTGNKVSLRFGTEEAVERVF--VEDKSFTCLYT-ENDTAFV 139 (225)
Q Consensus 95 riklknL~TG~kie~tf~s~dkve~~~--ve~k~~qyLY~-Dgd~~~F 139 (225)
.+.++...+.+..+.+|.-|+.+|+-. ++.+.++-++. ||+.++-
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~t~~~dgrk~ks~vt~eg~kLv~ 95 (134)
T 1ggl_A 48 HMTVRTLSTFRNYTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLVC 95 (134)
T ss_dssp EEEEEEECSSCCEEEEEETTSCEEEEETTTTSEEEEEEEEECSSSEEE
T ss_pred EEEEEEEcCCceEEEEeeCCCcEEEEccCCCCcEeeeEEEEECCEEEE
Confidence 356666777888999999999999999 88888877776 7765554
No 45
>2f73_A L-FABP, fatty acid-binding protein, liver; structural genomics, structural genomics consortium, SGC, lipid binding protein; 2.50A {Homo sapiens} SCOP: b.60.1.2
Probab=37.17 E-value=77 Score=24.92 Aligned_cols=45 Identities=9% Similarity=0.111 Sum_probs=35.8
Q ss_pred eEEEeeCCCCCEEEEEecCCCcEEeeeEeeeEEEEEEE-eC-CeEEE
Q 027318 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-EN-DTAFV 139 (225)
Q Consensus 95 riklknL~TG~kie~tf~s~dkve~~~ve~k~~qyLY~-Dg-d~~~F 139 (225)
.+.++...+.+..+.+|+-|+.+|+-.++.+.++-++. || +.++-
T Consensus 69 ~~tikt~st~kt~~~~F~lGeEfee~t~DGrk~Ks~vt~egd~kLv~ 115 (149)
T 2f73_A 69 HFKFTITAGSKVIQNEFTVGEECELETMTGEKVKTVVQLEGDNKLVT 115 (149)
T ss_dssp EEEEEEEETTEEEEEEEETTSEEEEECSSSCEEEEECEEETTTEEEE
T ss_pred EEEEEEEeCCeEEEEEEeCCCcEEEEcCCCCEEEEEEEEeCCCcEEE
Confidence 34566666778899999999999999999888887777 77 66544
No 46
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=37.16 E-value=28 Score=24.19 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=24.4
Q ss_pred cccccCchhhhhhhhccCCCCEEEEEEECCEEEE
Q 027318 146 EQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALS 179 (225)
Q Consensus 146 EQi~v~~~~lgd~~~yL~eg~~V~v~~~~g~~i~ 179 (225)
-|+.||++... +.. |.+|++|.+...+|..+-
T Consensus 13 ~~v~iPk~~~~-~lg-l~~gd~v~i~~~~~~iii 44 (82)
T 1mvf_D 13 PAVRIPATLMQ-ALN-LNIDDEVKIDLVDGKLII 44 (82)
T ss_dssp EEEECCHHHHH-HTT-CCTTCBEEEEEETTEEEE
T ss_pred cEEEECHHHHH-HcC-CCCCCEEEEEEECCEEEE
Confidence 58899998763 333 789999999988887553
No 47
>3rsw_A Fatty acid-binding protein, heart; lipid carrier, molecular chaperone, heart fatty acid binding type 2 diabetes, atherosclerosis, chaperone; 2.60A {Homo sapiens} PDB: 1g5w_A 1hmr_A* 1hms_A* 1hmt_A* 2hmb_A* 1bwy_A
Probab=35.95 E-value=85 Score=25.01 Aligned_cols=44 Identities=11% Similarity=0.209 Sum_probs=35.5
Q ss_pred eEEEeeCCCCCEEEEEecCCCcEEeeeEeeeEEEEEEE-eCCeEE
Q 027318 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAF 138 (225)
Q Consensus 95 riklknL~TG~kie~tf~s~dkve~~~ve~k~~qyLY~-Dgd~~~ 138 (225)
.+.++...+.+..+.+|+-|+.+|+-..+.+.++-++. ||+.++
T Consensus 74 ~~tikt~St~kt~~~~F~lGeEfee~t~DGrk~Ks~vt~eg~kLv 118 (158)
T 3rsw_A 74 ILTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLV 118 (158)
T ss_dssp EEEEEEECSSCEECCEEETTBCEEEECSSCCEEEEEEEESSSEEE
T ss_pred EEEEEEEccCceEEEEEEcCCcEEeecCCCCEEEEEEEEECCEEE
Confidence 35567777888899999999999999888888877776 677654
No 48
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=35.26 E-value=77 Score=23.83 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=23.9
Q ss_pred CCccEEEECCeEEEEEEeEEeeCCCCCeEeeEEE
Q 027318 65 RPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMEL 98 (225)
Q Consensus 65 kkG~~I~~dG~py~Vv~~~h~KpGKG~A~vrikl 98 (225)
|+|+.+.++|+-|.|..+++. .|.-.++++-
T Consensus 65 ~r~D~Vv~~Gk~y~Vtr~~~~---ngk~~i~LE~ 95 (102)
T 2pp6_A 65 RRGDRVVLRGSEFTVTRIRRF---NGKPQLTLEE 95 (102)
T ss_dssp CTTCEEEETTEEEEEEEEEEE---TTEEEEEEEE
T ss_pred CCCCEEEEcCcEEEEEEEEEE---CCcEEEEEEe
Confidence 579999999999999999975 3445555543
No 49
>1ftp_A Muscle fatty acid binding protein; binding protein(fatty acid); 2.20A {Schistocerca gregaria} SCOP: b.60.1.2 PDB: 2flj_A*
Probab=34.85 E-value=1.2e+02 Score=23.01 Aligned_cols=45 Identities=9% Similarity=0.174 Sum_probs=35.8
Q ss_pred eEEEeeCCCCCEEEEEecCCCcEEeeeEeeeEEEEEEE-eC-CeEEE
Q 027318 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-EN-DTAFV 139 (225)
Q Consensus 95 riklknL~TG~kie~tf~s~dkve~~~ve~k~~qyLY~-Dg-d~~~F 139 (225)
...++...+.+..+.+|+-|+.+|.-.++.+.++-++. || +.++-
T Consensus 50 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~~kLv~ 96 (133)
T 1ftp_A 50 KFKLTSKTAIKNTEFTFKLGEEFDEETLDGRKVKSTITQDGPNKLVH 96 (133)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEECSSSEEEE
T ss_pred EEEEEEEcCCeeEEEEEECCCcEEEECCCCCEEEEEEEEeCCCEEEE
Confidence 35566777788899999999999999999888877776 77 65544
No 50
>2kca_A Bacteriophage SPP1 complete nucleotide sequence; beta-barrel, virus; NMR {Bacillus phage SPP1}
Probab=33.89 E-value=90 Score=22.11 Aligned_cols=38 Identities=8% Similarity=0.054 Sum_probs=28.1
Q ss_pred CCCCCccEEEECCeEEEEEEe-EEeeCCCCCeEeeEEEeeC
Q 027318 62 SHVRPGNVIEKSGKMYQVIDA-EHKQRGRGGAMMQMELRDI 101 (225)
Q Consensus 62 ~dikkG~~I~~dG~py~Vv~~-~h~KpGKG~A~vriklknL 101 (225)
.+|..++.|.++|+.|.|..+ ... ..++-++.+.++-.
T Consensus 66 ~~i~~~~ri~~~g~~y~I~~v~~~~--~~~~~~l~i~~~~~ 104 (109)
T 2kca_A 66 DRIDKKMRVIYRGKIVTFIGDPVDL--SGLQEITRIKGKED 104 (109)
T ss_dssp CCSSSSEEEEETTEEEEEEEEEEEC--CTTTCEEEEEEECC
T ss_pred CCCCCccEEEECCEEEEEEEeccCc--ccCcEEEEEEEEEc
Confidence 588999999999999999988 544 23344666665543
No 51
>1eal_A Gastrotropin, ileal lipid binding protein; intracellular lipid binding protein, bIle acid binding, ileal epithelium, fatty acid binding protein; NMR {Sus scrofa} SCOP: b.60.1.2 PDB: 1eio_A* 1o1u_A 1o1v_A*
Probab=33.21 E-value=97 Score=23.43 Aligned_cols=45 Identities=13% Similarity=0.212 Sum_probs=34.8
Q ss_pred eEEEeeC-CCCCEEEEEecCCCcEEeeeEeeeEEEEEEE-eCCeEEE
Q 027318 95 QMELRDI-DTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (225)
Q Consensus 95 riklknL-~TG~kie~tf~s~dkve~~~ve~k~~qyLY~-Dgd~~~F 139 (225)
.+.++.. .+.+..+.+|+-|+.+|.-.++.+.++-++. ||+.++-
T Consensus 46 ~~~ikt~~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 92 (127)
T 1eal_A 46 NFTWSQQYPGGHSITNTFTIGKECDIETIGGKKFKATVQMEGGKVVV 92 (127)
T ss_dssp EEEEEEECSSSCEEEEEEESSSCEEEECSSSCEEEECCEECSSEEEE
T ss_pred EEEEEEEECCCceEEEEEECCCcEEEECCCCCEEEEEEEEECCEEEE
Confidence 3445555 6667888999999999999999888887776 7776554
No 52
>2g7b_A Cellular retinoic acid-binding protein 2; crabpii, retinoids, beta barrel, crystallography, X-RAY, high resolution, schiff base; HET: AZE; 1.18A {Homo sapiens} PDB: 3d97_A* 3fa8_A 3i17_B 3fa7_A* 3fa9_A 3d95_A 3cwk_A 3f8a_A* 3fep_A* 3fek_B 3fa6_A 1bm5_A 1xca_A 3fel_A* 3f9d_A* 3cr6_A* 3fen_A 1blr_A 1cbq_A* 1cbs_A* ...
Probab=32.52 E-value=97 Score=23.70 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=34.0
Q ss_pred eEEEeeCCCCCEEEEEecCCCcEEeeeEeeeEEEEEEE-eC-CeEEE
Q 027318 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-EN-DTAFV 139 (225)
Q Consensus 95 riklknL~TG~kie~tf~s~dkve~~~ve~k~~qyLY~-Dg-d~~~F 139 (225)
++.++...+.+..+.+|.-|+.+|+-.++.+.++-++. || +.++-
T Consensus 49 ~~tikt~s~~kt~~~~F~lGeEfee~t~dgrk~ks~~t~egd~kLv~ 95 (137)
T 2g7b_A 49 TFYIKTSTTVRTTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVC 95 (137)
T ss_dssp EEEEEEEETTEEEEEEEETTSCEEEECTTSCEEEEEEEEEETTEEEE
T ss_pred EEEEEEEECCeEEEEEEecCCceEEECCCCCEEEEEEEEeCCCeEEE
Confidence 34555666677888999999999999999888877765 66 45543
No 53
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=32.07 E-value=1e+02 Score=21.98 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=30.7
Q ss_pred eEEcCCCCCccEEEECCeEEEEEEeEEeeCCCC--CeEeeEEEeeCCCCCEEEEEec
Q 027318 58 KVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRG--GAMMQMELRDIDTGNKVSLRFG 112 (225)
Q Consensus 58 ~i~a~dikkG~~I~~dG~py~Vv~~~h~KpGKG--~A~vriklknL~TG~kie~tf~ 112 (225)
...+.||++|+.+.+-|....+-+......-.| +-...+.+.| .||...-.-|.
T Consensus 2 ~~kI~dl~~g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~D-eTG~I~~tlW~ 57 (97)
T 3e0e_A 2 NYKISELMPNLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKD-DTGSIRGTLWN 57 (97)
T ss_dssp EECGGGCCTTEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEE-TTEEEEEEEEG
T ss_pred CeEHHHCCCCCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEEC-CCCcEEEEEEC
Confidence 456899999988877554444332222111124 3455788999 79944433364
No 54
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=31.37 E-value=77 Score=24.35 Aligned_cols=30 Identities=13% Similarity=0.093 Sum_probs=22.4
Q ss_pred eeeEEcCCCCCccEEE-ECC-----eEEEEEEeEEe
Q 027318 56 AVKVNASHVRPGNVIE-KSG-----KMYQVIDAEHK 85 (225)
Q Consensus 56 ~~~i~a~dikkG~~I~-~dG-----~py~Vv~~~h~ 85 (225)
...+.|.+|++|+.|. .+| .+.+|++++.+
T Consensus 84 ~~~v~A~~l~~GD~v~~~~~~~~~~~~~~V~~v~~~ 119 (145)
T 1at0_A 84 LTFVFADRIEEKNQVLVRDVETGELRPQRVVKVGSV 119 (145)
T ss_dssp EEEEEGGGCCTTCEEEEECTTTCCEEEEEEEEEEEE
T ss_pred EEEEEHHHCcCCCEEEEecCCCCCEEEEEEEEEEEE
Confidence 4678899999999885 455 46777777653
No 55
>2lba_A BABP protein; ileal bIle acid binding protein, lipid binding protein; HET: CHO; NMR {Gallus gallus}
Probab=30.97 E-value=87 Score=24.08 Aligned_cols=45 Identities=9% Similarity=0.169 Sum_probs=35.6
Q ss_pred eEEEeeC-CCCCEEEEEecCCCcEEeeeEeeeEEEEEEE-eCCeEEE
Q 027318 95 QMELRDI-DTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (225)
Q Consensus 95 riklknL-~TG~kie~tf~s~dkve~~~ve~k~~qyLY~-Dgd~~~F 139 (225)
++.++.. .+.+..+.+|+-|+.+|.-.++.+.++-++. ||+.++-
T Consensus 51 ~~tikt~~s~~kt~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 97 (136)
T 2lba_A 51 DFTWTQHFPGGRTTTNSFTIDKEADMETMGGRKFKATVKMEGGKIVA 97 (136)
T ss_dssp EEEEEEECTTSCCEEEEEETTEEEEEECTTCCEEEEEEEESSSCEEE
T ss_pred EEEEEEEeCCCceEEEEEeCCCcEEEECCCCCEeeEEEEEECCEEEE
Confidence 4555666 6777889999999999999999888887777 7776654
No 56
>3vg7_A Fatty acid-binding protein, liver; lfabp, S-SAD, copper kalpha, palmitic acid, lipid binding PR; HET: PLM; 1.44A {Homo sapiens} PDB: 3b2i_A* 3b2j_A* 3b2k_A* 3b2l_A* 3stk_A* 3stm_X* 3stn_A 3vg2_A* 3vg3_A* 3vg4_A* 3vg5_A* 3vg6_A* 3b2h_A* 2py1_A 2l67_A 2l68_A 2lkk_A* 2ju3_A 2ju7_A 2ju8_A* ...
Probab=27.95 E-value=1.1e+02 Score=23.29 Aligned_cols=45 Identities=9% Similarity=0.111 Sum_probs=34.2
Q ss_pred eEEEeeCCCCCEEEEEecCCCcEEeeeEeeeEEEEEEE-eC-CeEEE
Q 027318 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-EN-DTAFV 139 (225)
Q Consensus 95 riklknL~TG~kie~tf~s~dkve~~~ve~k~~qyLY~-Dg-d~~~F 139 (225)
++.++...+.+..+.+|.-|+.+|.-.++.+.++-++. || +.++-
T Consensus 50 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~egd~kLv~ 96 (132)
T 3vg7_A 50 HFKFTITAGSKVIQNEFTVGEECELETMTGEKVKTVVQLEGDNKLVT 96 (132)
T ss_dssp EEEEEEEETTEEEEEEEETTSEEEEECTTSCEEEEECEESSTTEEEE
T ss_pred EEEEEEEEcCceEEEEEECCCcEEeECCCCCEEEEEEEEecCCeEEE
Confidence 34455556677788999999999999999888887776 66 55543
No 57
>1wlf_A PEX1, peroxisome biogenesis factor 1; N-terminal domain, protein transport; 2.05A {Mus musculus} SCOP: b.52.2.3 d.31.1.1
Probab=27.93 E-value=61 Score=26.13 Aligned_cols=41 Identities=7% Similarity=0.039 Sum_probs=30.4
Q ss_pred cCCCCEEEEEEECCEEEEEeCCCeEEEEEEEeCCCCCCccCCCCceeEEEecCcEEEc
Q 027318 162 LQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMV 219 (225)
Q Consensus 162 L~eg~~V~v~~~~g~~i~v~lP~~V~l~V~etep~~KGdTat~~~K~A~LeTG~~i~V 219 (225)
+.+|+.+.++.+.. ..+.++|+.++|. ...|.+.++.+|.|
T Consensus 135 v~~G~~i~v~~~g~--------~~i~f~V~~~~P~---------~~~v~It~~TeI~v 175 (179)
T 1wlf_A 135 VFPKAVVPIWVDQQ--------TYIFIQIVTLMPA---------APYGRLETNTKLLI 175 (179)
T ss_dssp ECTTCEEEEESSSS--------CEEEEEEEEEESC---------CSSEECCTTCEEEE
T ss_pred ccCCCEEEEEecCC--------eEEEEEEEEeeCC---------CCeEEECCCcEEEE
Confidence 45677777655333 7789999999992 24788888888876
No 58
>3elx_A Ileal bIle acid-binding protein; ileal bIle acid-bindign protein, zebrafish, cholic acid, LIP binding, transport, lipid binding protein; 1.60A {Danio rerio} SCOP: b.60.1.0 PDB: 3elz_A* 3em0_A*
Probab=27.88 E-value=79 Score=24.47 Aligned_cols=45 Identities=13% Similarity=0.154 Sum_probs=34.8
Q ss_pred eEEEeeCCC-CCEEEEEecCCCcEEeeeEeeeEEEEEEE-eCCeEEE
Q 027318 95 QMELRDIDT-GNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (225)
Q Consensus 95 riklknL~T-G~kie~tf~s~dkve~~~ve~k~~qyLY~-Dgd~~~F 139 (225)
.+.++...+ .+..+.+|.-|+.+|.-.++.+.++-++. ||+.++-
T Consensus 50 ~~tikt~s~~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 96 (138)
T 3elx_A 50 DFTWTQYYPNNHVVTNKFIVGKESDMETVGGKKFKGIVSMEGGKLTI 96 (138)
T ss_dssp EEEEEEEEGGGEEEEEEEETTSCEEEECTTSCEEEECCEEETTEEEE
T ss_pred EEEEEEEEcCCceEEEEEEcCCcEEeecCCCCEEEEEEEEECCEEEE
Confidence 345555566 67788999999999999998888887775 7777654
No 59
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=27.00 E-value=1e+02 Score=23.64 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=31.5
Q ss_pred eeeEEcCCCCCccEEEE---CCeE--EEEEEeEEeeCCCCCeEeeEEEe
Q 027318 56 AVKVNASHVRPGNVIEK---SGKM--YQVIDAEHKQRGRGGAMMQMELR 99 (225)
Q Consensus 56 ~~~i~a~dikkG~~I~~---dG~p--y~Vv~~~h~KpGKG~A~vriklk 99 (225)
+..+.+.||+.|+.+.- +|++ -.|+.+-|..|..-..+++++..
T Consensus 13 G~~k~i~eL~~GD~Vla~d~~G~~~~s~V~~~~~r~~~~~~~f~~I~t~ 61 (145)
T 1at0_A 13 GVRKPLGELSIGDRVLSMTANGQAVYSEVILFMDRNLEQMQNFVQLHTD 61 (145)
T ss_dssp SCEEEGGGCCTTCEEEEECTTSCEEEEEEEEEEEEEEEEEEEEEEEEET
T ss_pred CCEeEHHHcCCCCEEEEECCCCCEEEEEEEEEEeeCCCcceeEEEEEEC
Confidence 45578899999998863 5753 57888887777444567777654
No 60
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=26.46 E-value=1.1e+02 Score=20.36 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=31.7
Q ss_pred EeCCeEEEecCCCccccccCchhhhhh-hhccCCCCEEEEEEECCE
Q 027318 132 TENDTAFVIESETFEQLEVPLDVFGKA-GAYLQEGMKVWLQLYDGR 176 (225)
Q Consensus 132 ~Dgd~~~FMD~EtyEQi~v~~~~lgd~-~~yL~eg~~V~v~~~~g~ 176 (225)
.+...|=|..++.-+++-+..+.+... ..-|.+|+.|+....++.
T Consensus 9 n~~kGfGFI~~~~g~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~~ 54 (66)
T 1g6p_A 9 DSKKGYGFITKDEGGDVFVHWSAIEMEGFKTLKEGQVVEFEIQEGK 54 (66)
T ss_dssp ETTTTEEEEEETTSCBCBBCSSSSCCSSCCCCCSSSEEEEEEECSS
T ss_pred ECCCCEEEEecCCCceEEEEhHHccccCCCCCCCCCEEEEEEEECC
Confidence 344567677666558888887777543 357999999998876653
No 61
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=25.96 E-value=87 Score=24.27 Aligned_cols=90 Identities=17% Similarity=0.289 Sum_probs=44.3
Q ss_pred CCCeEeeEEEeeCCCCCEEEEEecCCCcEEee--eEee-----eEEEEEEEeCCeEEEecCCCccccccCchhhhhhhhc
Q 027318 89 RGGAMMQMELRDIDTGNKVSLRFGTEEAVERV--FVED-----KSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAY 161 (225)
Q Consensus 89 KG~A~vriklknL~TG~kie~tf~s~dkve~~--~ve~-----k~~qyLY~Dgd~~~FMD~EtyEQi~v~~~~lgd~~~y 161 (225)
-....+++.+|. .+|+.+......++.|..+ .++. -+-|-|+..|. .+-|..+-.++.|.....=...--
T Consensus 16 ~~~~~m~i~Vk~-~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~--~L~d~~tL~~~~i~~~~~l~l~~~ 92 (172)
T 3u30_A 16 PRGSHMQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK--QLEDGRTLSDYNIQKESTLHLVLR 92 (172)
T ss_dssp ---CCEEEEEEE-TTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTE--ECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred CCCCcEEEEEEe-CCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCc--cccccCCHhHcCCcccceeeeeec
Confidence 355667888887 4788888888888886541 1111 11244555552 334444555555543211111112
Q ss_pred cCCCCEEEEEEECCEEEEEe
Q 027318 162 LQEGMKVWLQLYDGRALSGS 181 (225)
Q Consensus 162 L~eg~~V~v~~~~g~~i~v~ 181 (225)
+..|+.+.|...+|+.+.++
T Consensus 93 ~~gg~~i~Vk~~~g~~~~l~ 112 (172)
T 3u30_A 93 LRGGMQIFVKTLTGKTITLE 112 (172)
T ss_dssp CCCCEEEEEEESSCCEEEEE
T ss_pred ccccccceeecccCcceeEE
Confidence 34445555555555544443
No 62
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=25.77 E-value=57 Score=23.31 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=19.8
Q ss_pred cCCCCEEEEEEECCEEEEEeCCCeEEEEEEEeCCC
Q 027318 162 LQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHAS 196 (225)
Q Consensus 162 L~eg~~V~v~~~~g~~i~v~lP~~V~l~V~etep~ 196 (225)
+..|+.+.+..+. ..+.+.|++|+|.
T Consensus 42 V~~GD~I~i~~~G---------~~i~F~Vv~t~P~ 67 (83)
T 2jv2_A 42 VRTGDVIGISILG---------KEVKFKVVQAYPS 67 (83)
T ss_dssp ECTTCEEEEEETT---------EEEEEEEEEEESS
T ss_pred ccCCCEEEEeeCC---------CEEEEEEEEecCc
Confidence 3677777776533 7788999999994
No 63
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F
Probab=25.66 E-value=59 Score=24.06 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=19.6
Q ss_pred ccceeeec---eeeEEcCCCCCccEEEEC
Q 027318 48 PWSATQQR---AVKVNASHVRPGNVIEKS 73 (225)
Q Consensus 48 ~~~~~~~R---~~~i~a~dikkG~~I~~d 73 (225)
|-.++..| ...+.+.+|++||+|.+.
T Consensus 11 p~~a~v~r~g~~~~i~~~~l~~GDiv~v~ 39 (113)
T 2hc8_A 11 AKTAVVIRDGKEIAVPVEEVAVGDIVIVR 39 (113)
T ss_dssp CSEEEEEETTEEEEEEGGGCCTTCEEEEC
T ss_pred CCEEEEEECCEEEEEEHHHCCCCCEEEEC
Confidence 33555555 467999999999999874
No 64
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=25.01 E-value=36 Score=25.92 Aligned_cols=53 Identities=8% Similarity=-0.063 Sum_probs=31.9
Q ss_pred EeeeEeeeEEEEEE----------EeCCeEEEecCCCccccccCchhhhhhhh-ccCCCCEEEE
Q 027318 118 ERVFVEDKSFTCLY----------TENDTAFVIESETFEQLEVPLDVFGKAGA-YLQEGMKVWL 170 (225)
Q Consensus 118 e~~~ve~k~~qyLY----------~Dgd~~~FMD~EtyEQi~v~~~~lgd~~~-yL~eg~~V~v 170 (225)
+.+.++++.+...| .+++.|++.|..+-.=..|+...+..... -|++|+.+.+
T Consensus 56 ~~~~VSr~HA~I~~r~~~~~~~~~~~~~~~~l~Dl~StNGT~vNg~ri~~~~~~~L~~GD~I~~ 119 (130)
T 4h87_A 56 EHPSVSRYHAVLQHRASGPDGECDSNGPGFYLYDLGSTHGTFLNKTRIPPRTYCRVHVGHVVRF 119 (130)
T ss_dssp CCTTSCSSCEEEEEBCCCCCC------CCEEEEECSCSSCEEETTEECCTTCCEECCTTCEEEE
T ss_pred CCCCcchhcEEEEEecccCccceeccCCcceEeeCCCCCceEECCEECCCCceeECCCCCEEEE
Confidence 34556777776665 34557889997655555566555544332 3788888765
No 65
>3q3y_A HEVB EV93 3C protease; cysteine trypsin-like protease, 3C cysteine protease (picorn antiviral compound 1 (AG7404); HET: XNV; 1.32A {Human enterovirus B} SCOP: b.47.1.4 PDB: 3q3x_A* 3ruo_A* 3zyd_A 3zz5_A* 3zz6_A* 3zz7_A* 3zz8_A* 3zz9_A* 3zza_A* 3zzb_A* 2ztx_A 2vb0_A 2zty_A 2ztz_A 2zu3_A* 3zye_A 3zz3_A 2zu1_A 3zz4_A 3zzc_A* ...
Probab=23.77 E-value=60 Score=26.97 Aligned_cols=64 Identities=17% Similarity=0.302 Sum_probs=36.7
Q ss_pred cccCCCCCCCCCCCCCCCCccccccccccceeeec---eeeEEcCCCCC-ccEEEECCe-EEEEEEeEE-eeCCC-CCeE
Q 027318 21 SRSLPNFLPSPDCHRSSGDRDTCLLRFPWSATQQR---AVKVNASHVRP-GNVIEKSGK-MYQVIDAEH-KQRGR-GGAM 93 (225)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R---~~~i~a~dikk-G~~I~~dG~-py~Vv~~~h-~KpGK-G~A~ 93 (225)
+|.+++|+|..+. ....-|-+++.- .+.+.++++.. |+ |-..|. .++++.+.. .|+|. |++.
T Consensus 85 FRDIrkfi~~~~~----------~~~~~~Lv~ns~~~p~~~~~vG~v~~~g~-inlsg~~t~r~l~Y~~pTk~G~CGgvL 153 (191)
T 3q3y_A 85 FRDIRGFLAREEV----------EVNEAVLAINTSKFPNMYIPVGQVTDYGF-LNLGGTPTKRMLVYNFPTRAGQCGGVL 153 (191)
T ss_dssp BCCCGGGBCSSCC----------CEEEEEEEECSSSSTTEEEEEEEEEEEEE-EEETTEEEEEEEEEESCCCTTCTTCEE
T ss_pred ccchHHhcccccc----------cCCceEEEEEcCCCcceEEEeccEEEcce-EeCCCCcccCEEEecCCCCCCccCCEE
Confidence 3699999988411 111112223221 24455555555 44 455654 568888887 57999 7776
Q ss_pred ee
Q 027318 94 MQ 95 (225)
Q Consensus 94 vr 95 (225)
+.
T Consensus 154 ~~ 155 (191)
T 3q3y_A 154 MS 155 (191)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 66
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=23.40 E-value=1.2e+02 Score=21.29 Aligned_cols=32 Identities=9% Similarity=0.193 Sum_probs=24.2
Q ss_pred EcCCCCCccEEEE-----CCeEEEEEEeEEeeCCCCC
Q 027318 60 NASHVRPGNVIEK-----SGKMYQVIDAEHKQRGRGG 91 (225)
Q Consensus 60 ~a~dikkG~~I~~-----dG~py~Vv~~~h~KpGKG~ 91 (225)
..+.|+.|+.|.. +|.-|.|.+++...|++|+
T Consensus 44 ~l~~lk~Gd~V~F~~~~~~~g~~~it~i~~~~~~~~~ 80 (82)
T 2l55_A 44 LPQGLKAGDRVAFSFRLDPHGMATLVTVAPQVQTAGA 80 (82)
T ss_dssp CCSSCSTTCEEEEEEEEETTTEEEEEEEEECCSSCCC
T ss_pred HhhcCCCCCEEEEEEEECCCCeEEEEEEEecCCCCCC
Confidence 4688999999863 4436999999887776653
No 67
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=22.36 E-value=56 Score=22.84 Aligned_cols=42 Identities=17% Similarity=0.127 Sum_probs=28.0
Q ss_pred CCeEEEecCCC-ccccccCchhhhhh-----hhccCCCCEEEEEEECC
Q 027318 134 NDTAFVIESET-FEQLEVPLDVFGKA-----GAYLQEGMKVWLQLYDG 175 (225)
Q Consensus 134 gd~~~FMD~Et-yEQi~v~~~~lgd~-----~~yL~eg~~V~v~~~~g 175 (225)
...|=|..+++ -+++-+..+.+... ..-|.+|+.|+....++
T Consensus 19 ~kGfGFI~~~~gg~DvFvH~s~i~~~~~~~g~~~l~~G~~V~f~~~~~ 66 (79)
T 1h95_A 19 RNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEG 66 (79)
T ss_dssp TTTEEEEEEGGGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEEC
T ss_pred CCCcEEEecCCCCccEEEEhHHccccccccccccCCCCCEEEEEEEEC
Confidence 34576666654 46777777666542 45689999998877543
No 68
>2kl5_A Uncharacterized protein YUTD; structural genomics, protein northeast structural genom consortium (NESG), target SR232, PSI-2; NMR {Bacillus subtilis}
Probab=21.95 E-value=60 Score=24.76 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=21.6
Q ss_pred eEEcCCCCCccEEEECCeEEEEEEeE
Q 027318 58 KVNASHVRPGNVIEKSGKMYQVIDAE 83 (225)
Q Consensus 58 ~i~a~dikkG~~I~~dG~py~Vv~~~ 83 (225)
||..++-|-+..|.++|..|++++..
T Consensus 1 ~~~~~~~~~~~~i~i~~~~yelv~n~ 26 (110)
T 2kl5_A 1 MIGMSEKRGEIMILIQNAEFELVHNF 26 (110)
T ss_dssp CTTTTCCCCSCEEEETTEEEEEEEEE
T ss_pred CCccccccCCCEEEECCEEEEEEehh
Confidence 56677877778899999999999876
No 69
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=21.21 E-value=2.1e+02 Score=19.69 Aligned_cols=44 Identities=14% Similarity=0.015 Sum_probs=32.1
Q ss_pred EeCCeEEEecCCCccccccCchhhh-h-hhhccCCCCEEEEEEECC
Q 027318 132 TENDTAFVIESETFEQLEVPLDVFG-K-AGAYLQEGMKVWLQLYDG 175 (225)
Q Consensus 132 ~Dgd~~~FMD~EtyEQi~v~~~~lg-d-~~~yL~eg~~V~v~~~~g 175 (225)
.+...|=|..+++-+++-+....+. . ...-|.+|+.|+....+|
T Consensus 9 n~~KGfGFI~~~dG~DvFvH~s~i~~~~g~~~l~~G~~V~F~~~~g 54 (74)
T 2kcm_A 9 LAAKKYGFIQGDDGESYFLHFSELLDKKDEGKLVKGSMVHFDPTPT 54 (74)
T ss_dssp ETTTTEEEEEETTSCEECCCGGGSSCSGGGTTCCTTSEEEEEEECT
T ss_pred ECCCCEEEEecCCCceEEEEhhhcccCCCCCCCCCCCEEEEEEEEC
Confidence 3445677777655588888888776 3 336799999999887655
No 70
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=21.13 E-value=32 Score=24.84 Aligned_cols=53 Identities=8% Similarity=0.070 Sum_probs=33.8
Q ss_pred EEeeeEeeeEEEEEEEeCCeEEEecCCCccccccCchhhhhhhhccCCCCEEEE
Q 027318 117 VERVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWL 170 (225)
Q Consensus 117 ve~~~ve~k~~qyLY~Dgd~~~FMD~EtyEQi~v~~~~lgd~~~yL~eg~~V~v 170 (225)
++...+.++.+++.+..++.|++.|...-.-..|+...+... ..|++|+.+.+
T Consensus 40 l~d~~vSr~Ha~i~~~~~~~~~l~Dl~S~nGt~vng~~i~~~-~~L~~Gd~i~~ 92 (106)
T 3gqs_A 40 LSDMSISRQHAKIIIGNDNSVLIEDLGSKNGVIVEGRKIEHQ-STLSANQVVAL 92 (106)
T ss_dssp CCCTTSCSSCEEEEECTTSCEEEEECSCSSCCEETTEECSSE-EECCTTCCEEE
T ss_pred eCCCCcchhhcEEEECCCCcEEEEECcCCCCeEECCEECCCC-eECCCCCEEEE
Confidence 334678888888888745569999985444444554444331 25777776654
No 71
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=21.09 E-value=75 Score=22.21 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=23.0
Q ss_pred CCccccccCchhhhhhhhccCCCCEEEEEEE--CCEEE
Q 027318 143 ETFEQLEVPLDVFGKAGAYLQEGMKVWLQLY--DGRAL 178 (225)
Q Consensus 143 EtyEQi~v~~~~lgd~~~yL~eg~~V~v~~~--~g~~i 178 (225)
||| |+.+|.+.. ++.. |++|+++.+... ||+.+
T Consensus 23 ety-YInIPaeI~-kaLg-Ik~gD~fel~ve~kdgeIv 57 (68)
T 3o27_A 23 TTF-YLLIPKDIA-EALD-IKPDDTFILNMEQKDGDIV 57 (68)
T ss_dssp CCE-EEEECHHHH-HHTT-CCTTCCEEEEEEEETTEEE
T ss_pred eEE-EEeCcHHHH-HHhC-CCCCCEEEEEEecCCCeEE
Confidence 444 677887754 5555 899988888876 77653
No 72
>2b0f_A Picornain 3C (protease 3C) (P3C); beta barrel, hydrolase-hydrolase inhibitor complex; HET: CA1; NMR {Human rhinovirus 14} PDB: 2in2_A
Probab=20.69 E-value=1.5e+02 Score=24.06 Aligned_cols=64 Identities=14% Similarity=0.173 Sum_probs=39.9
Q ss_pred cccCCCCCCCCCCCCCCCCccccccccccceee---eceeeEEcCCCCCccEEEECCe-EEEEEEeEE-eeCCC-CCeEe
Q 027318 21 SRSLPNFLPSPDCHRSSGDRDTCLLRFPWSATQ---QRAVKVNASHVRPGNVIEKSGK-MYQVIDAEH-KQRGR-GGAMM 94 (225)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~R~~~i~a~dikkG~~I~~dG~-py~Vv~~~h-~KpGK-G~A~v 94 (225)
+|.+++|+|..... . .+|-+++ ...+.+..++++.--.|..+|. -++++.+.. .|+|. |++.+
T Consensus 83 fRDIrkfi~~~~~~----------~-~~~lv~n~~~~p~~~~~vg~~~~~g~i~l~G~~t~~~~~Y~~pTk~G~CGgvl~ 151 (182)
T 2b0f_A 83 FRDIRGFISEDLEG----------V-DATLVVHSNNFTNTILEVGPVTMAGLINLSSTPTNRMIRYDYATKTGQCGGVLC 151 (182)
T ss_dssp BCCGGGTBCSSCCC----------S-EEEEEEESSSCEEEEEEEEEEEEEEEEEETTEEEEEEEEEESCCCTTCTTCEEE
T ss_pred ccchHHhcCCCCCC----------C-ceEEEEEcCCCceEEEEecceEEeceEcCCCcEecceEEeccCCCCcccCCeEE
Confidence 36899999863110 0 3344442 2234567777777333668886 668888876 57899 77775
Q ss_pred e
Q 027318 95 Q 95 (225)
Q Consensus 95 r 95 (225)
.
T Consensus 152 ~ 152 (182)
T 2b0f_A 152 A 152 (182)
T ss_dssp E
T ss_pred e
Confidence 4
No 73
>3e59_A Pyoverdine biosynthesis protein PVCA; isonitrIle, paerucumarin, 2-isocyano-6,7-dihydroxycoum transferase; HET: PGE; 2.10A {Pseudomonas aeruginosa}
Probab=20.36 E-value=55 Score=29.43 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=24.4
Q ss_pred cccccceeeec----eeeEEcCCCC--CccEEEECCeEEEEE
Q 027318 45 LRFPWSATQQR----AVKVNASHVR--PGNVIEKSGKMYQVI 80 (225)
Q Consensus 45 ~~~~~~~~~~R----~~~i~a~dik--kG~~I~~dG~py~Vv 80 (225)
+..||+-+..+ +......+++ .+..|..||+||--.
T Consensus 277 ~~TPWH~vav~~dG~~~~~~~~~~~~~~~eLV~~~GRPs~f~ 318 (330)
T 3e59_A 277 WLTPWHGVAVNTEDRFVLMKRSEVLELGGELVQINGQPSHYR 318 (330)
T ss_dssp TCCGGGSEEEECSSSEEEECHHHHHHTTCEEEEETTEEEEEE
T ss_pred CCCCCcceeEecCCeEEEeEHHHhccCceeEEEECCeeeEEE
Confidence 46999987644 3334444554 578899999998543
No 74
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=20.06 E-value=1.3e+02 Score=22.23 Aligned_cols=85 Identities=14% Similarity=0.291 Sum_probs=39.6
Q ss_pred eEEEeeCCCCCEEEEEecCCCcEEeee--------EeeeEEEEEEEeCCeEEEecCCCccccccCchhhhhhhhccCCCC
Q 027318 95 QMELRDIDTGNKVSLRFGTEEAVERVF--------VEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGM 166 (225)
Q Consensus 95 riklknL~TG~kie~tf~s~dkve~~~--------ve~k~~qyLY~Dgd~~~FMD~EtyEQi~v~~~~lgd~~~yL~eg~ 166 (225)
++.+|.. +|+..+..+..++.+..+- +.... |-|+..|. .+-|..+..++.+.....=....-...|+
T Consensus 2 ~i~vk~~-~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~-q~L~~~g~--~L~d~~tL~~~~i~~~~~l~l~~~~~~~~ 77 (152)
T 3b08_A 2 QIFVKTL-TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGK--QLEDGRTLSDYNIQKESTLHLVLRLRGGM 77 (152)
T ss_dssp EEEEEET-TSCEEEEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTE--ECCTTSBTGGGTCCTTCEEEEEECCTTCE
T ss_pred EEEEEeC-CCCEEEEEECCCCCHHHHHHHHHHHHCcChHH-eEEEECCe--ECcCcccHHHhccCCCCeeEEEeeccccc
Confidence 4455543 5778888888877765311 11112 33333343 23455556666554321101111123345
Q ss_pred EEEEEEECCEEEEEeCC
Q 027318 167 KVWLQLYDGRALSGSIP 183 (225)
Q Consensus 167 ~V~v~~~~g~~i~v~lP 183 (225)
.+.|...+|+.+.++++
T Consensus 78 ~i~Vk~~~g~~~~~~v~ 94 (152)
T 3b08_A 78 QIFVKTLTGKTITLEVE 94 (152)
T ss_dssp EEEEEESSSCEEEEEEC
T ss_pred ceeeeecCCCEEEEEeC
Confidence 55555555555444433
Done!