Query 027320
Match_columns 225
No_of_seqs 117 out of 1115
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 08:10:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027320.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027320hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03750 proteasome_alpha_type_ 100.0 2.3E-57 5E-62 374.4 28.5 213 1-218 14-226 (227)
2 PTZ00246 proteasome subunit al 100.0 4.9E-56 1.1E-60 371.9 29.1 220 1-223 18-243 (253)
3 PRK03996 proteasome subunit al 100.0 1.5E-55 3.3E-60 366.6 28.7 218 1-222 23-240 (241)
4 KOG0176 20S proteasome, regula 100.0 5.8E-56 1.3E-60 343.0 20.2 216 1-221 21-241 (241)
5 KOG0183 20S proteasome, regula 100.0 1.4E-55 3E-60 344.7 18.9 218 1-222 17-234 (249)
6 COG0638 PRE1 20S proteasome, a 100.0 3.9E-54 8.6E-59 356.1 27.9 218 1-224 16-235 (236)
7 cd03754 proteasome_alpha_type_ 100.0 1.9E-54 4.1E-59 354.1 25.2 199 1-199 15-215 (215)
8 TIGR03633 arc_protsome_A prote 100.0 6.8E-54 1.5E-58 353.1 26.4 208 1-213 16-224 (224)
9 cd03751 proteasome_alpha_type_ 100.0 9.5E-54 2.1E-58 349.1 25.0 195 1-199 17-212 (212)
10 cd03755 proteasome_alpha_type_ 100.0 1.8E-53 3.9E-58 346.6 25.3 194 1-199 14-207 (207)
11 cd03752 proteasome_alpha_type_ 100.0 2.9E-53 6.2E-58 346.9 25.5 196 1-199 16-213 (213)
12 cd03749 proteasome_alpha_type_ 100.0 4E-53 8.7E-58 345.5 25.5 196 1-200 14-211 (211)
13 KOG0182 20S proteasome, regula 100.0 5.2E-53 1.1E-57 329.7 23.8 225 1-225 22-246 (246)
14 KOG0181 20S proteasome, regula 100.0 2.5E-53 5.3E-58 327.7 18.2 215 1-221 19-233 (233)
15 cd03756 proteasome_alpha_arche 100.0 4E-52 8.7E-57 339.7 25.9 196 1-200 15-210 (211)
16 KOG0184 20S proteasome, regula 100.0 4.8E-52 1E-56 326.4 20.7 218 1-222 21-239 (254)
17 KOG0178 20S proteasome, regula 100.0 1.1E-51 2.4E-56 322.1 22.0 221 1-223 18-242 (249)
18 cd01911 proteasome_alpha prote 100.0 3.1E-51 6.7E-56 334.0 25.0 196 1-199 14-209 (209)
19 cd03753 proteasome_alpha_type_ 100.0 5.2E-51 1.1E-55 333.6 24.9 195 1-199 14-213 (213)
20 KOG0863 20S proteasome, regula 100.0 1.9E-49 4E-54 313.4 21.5 216 1-221 19-236 (264)
21 TIGR03691 20S_bact_alpha prote 100.0 1.1E-48 2.3E-53 321.9 25.7 204 4-218 17-228 (228)
22 TIGR03690 20S_bact_beta protea 100.0 1.4E-48 3.1E-53 320.2 25.1 204 15-223 2-216 (219)
23 cd03760 proteasome_beta_type_4 100.0 2.7E-48 5.8E-53 314.0 23.7 191 14-208 1-194 (197)
24 cd03758 proteasome_beta_type_2 100.0 9.1E-48 2E-52 309.9 23.9 188 16-209 2-191 (193)
25 PTZ00488 Proteasome subunit be 100.0 4.4E-47 9.5E-52 315.7 25.6 199 14-223 38-240 (247)
26 cd03759 proteasome_beta_type_3 100.0 5.3E-47 1.2E-51 305.9 23.7 188 14-207 2-192 (195)
27 cd03761 proteasome_beta_type_5 100.0 1.5E-46 3.2E-51 301.7 23.7 185 16-209 1-187 (188)
28 cd03757 proteasome_beta_type_1 100.0 5E-46 1.1E-50 303.9 23.2 187 14-204 7-202 (212)
29 TIGR03634 arc_protsome_B prote 100.0 8.8E-46 1.9E-50 296.5 23.4 182 15-203 1-184 (185)
30 cd03764 proteasome_beta_archea 100.0 6.5E-45 1.4E-49 292.2 24.1 186 16-210 1-188 (188)
31 cd03765 proteasome_beta_bacter 100.0 8.5E-45 1.8E-49 299.2 23.5 185 17-204 2-202 (236)
32 cd03763 proteasome_beta_type_7 100.0 1.9E-44 4.1E-49 289.7 23.8 185 16-210 1-187 (189)
33 cd03762 proteasome_beta_type_6 100.0 2.4E-44 5.2E-49 288.9 23.1 181 16-203 1-183 (188)
34 PF00227 Proteasome: Proteasom 100.0 6.8E-44 1.5E-48 286.2 22.8 186 11-199 1-190 (190)
35 cd01912 proteasome_beta protea 100.0 5.1E-43 1.1E-47 281.2 22.9 182 16-203 1-184 (189)
36 cd01906 proteasome_protease_Hs 100.0 4.4E-42 9.5E-47 273.9 23.8 180 16-199 1-182 (182)
37 KOG0177 20S proteasome, regula 100.0 2.9E-38 6.2E-43 243.3 17.0 188 17-210 3-192 (200)
38 KOG0179 20S proteasome, regula 100.0 4.8E-36 1.1E-40 234.2 18.8 190 14-207 28-228 (235)
39 KOG0175 20S proteasome, regula 100.0 8.3E-36 1.8E-40 239.3 16.4 197 15-220 71-269 (285)
40 KOG0173 20S proteasome, regula 100.0 5.4E-35 1.2E-39 234.1 17.1 190 8-206 31-222 (271)
41 KOG0185 20S proteasome, regula 100.0 3.8E-35 8.2E-40 232.8 15.1 198 14-215 40-241 (256)
42 KOG0174 20S proteasome, regula 100.0 1.1E-34 2.3E-39 224.2 14.5 199 14-219 18-218 (224)
43 PRK05456 ATP-dependent proteas 100.0 4.8E-32 1E-36 213.4 18.4 166 15-198 1-171 (172)
44 cd01913 protease_HslV Protease 100.0 5.3E-31 1.2E-35 206.2 18.5 163 16-198 1-170 (171)
45 KOG0180 20S proteasome, regula 100.0 4.8E-31 1E-35 200.4 17.1 185 14-204 7-194 (204)
46 cd01901 Ntn_hydrolase The Ntn 100.0 4.1E-30 8.9E-35 199.5 21.6 161 16-182 1-163 (164)
47 TIGR03692 ATP_dep_HslV ATP-dep 100.0 1.6E-30 3.5E-35 203.5 17.5 164 16-198 1-170 (171)
48 COG5405 HslV ATP-dependent pro 99.4 7.1E-12 1.5E-16 95.2 12.2 167 15-199 4-175 (178)
49 COG3484 Predicted proteasome-t 99.1 1.2E-09 2.7E-14 86.0 12.2 185 16-203 2-202 (255)
50 PF10584 Proteasome_A_N: Prote 97.1 0.00023 4.9E-09 36.7 0.9 10 1-10 14-23 (23)
51 PF09894 DUF2121: Uncharacteri 96.5 0.15 3.3E-06 40.5 13.4 150 16-202 2-180 (194)
52 COG4079 Uncharacterized protei 92.6 5.2 0.00011 33.2 13.7 168 16-217 2-196 (293)
53 KOG3361 Iron binding protein i 83.2 2.1 4.7E-05 32.0 4.0 44 131-176 71-114 (157)
54 PF07499 RuvA_C: RuvA, C-termi 55.0 8.7 0.00019 23.2 1.5 34 146-180 12-45 (47)
55 PF00178 Ets: Ets-domain; Int 51.0 34 0.00073 23.6 4.1 27 195-221 20-46 (85)
56 smart00413 ETS erythroblast tr 45.2 34 0.00074 23.8 3.4 26 195-220 20-45 (87)
57 PF14804 Jag_N: Jag N-terminus 44.8 32 0.00069 21.4 2.9 30 167-202 4-33 (52)
58 cd06404 PB1_aPKC PB1 domain is 42.5 1.1E+02 0.0024 21.0 7.3 52 166-222 18-69 (83)
59 PRK09732 hypothetical protein; 41.0 77 0.0017 23.9 5.0 37 165-204 4-40 (134)
60 PF11211 DUF2997: Protein of u 39.9 57 0.0012 19.9 3.5 32 131-162 3-34 (48)
61 PF03928 DUF336: Domain of unk 39.9 38 0.00083 25.1 3.3 36 166-204 1-36 (132)
62 KOG3806 Predicted transcriptio 37.0 46 0.00099 26.3 3.3 26 195-220 87-112 (177)
63 PF06057 VirJ: Bacterial virul 34.9 55 0.0012 26.3 3.6 35 86-124 43-77 (192)
64 PF10632 He_PIG_assoc: He_PIG 34.1 61 0.0013 17.6 2.5 22 116-138 5-26 (29)
65 KOG1165 Casein kinase (serine/ 31.0 51 0.0011 29.3 3.0 122 49-198 30-159 (449)
66 COG4245 TerY Uncharacterized p 30.2 1.3E+02 0.0028 24.3 4.9 44 172-216 22-67 (207)
67 PF03646 FlaG: FlaG protein; 29.5 1.3E+02 0.0028 21.2 4.6 32 191-222 65-97 (107)
68 PF04539 Sigma70_r3: Sigma-70 25.9 1.3E+02 0.0028 19.6 3.8 33 70-102 3-35 (78)
69 KOG1930 Focal adhesion protein 25.4 44 0.00096 30.1 1.7 19 160-179 212-230 (483)
70 cd05781 DNA_polB_B3_exo DEDDy 25.3 40 0.00087 26.7 1.3 58 18-75 28-86 (188)
71 PF01242 PTPS: 6-pyruvoyl tetr 25.2 1E+02 0.0022 22.3 3.4 46 60-105 43-98 (123)
72 PRK08868 flagellar protein Fla 24.8 3.2E+02 0.007 20.9 6.8 33 191-223 99-132 (144)
73 PRK10465 hydrogenase 2-specifi 24.6 49 0.0011 25.7 1.6 72 112-186 59-136 (159)
74 COG3193 GlcG Uncharacterized p 24.2 2E+02 0.0043 21.9 4.8 37 165-204 5-41 (141)
75 PRK14603 ruvA Holliday junctio 22.4 1.2E+02 0.0026 24.4 3.5 37 145-181 160-196 (197)
76 TIGR02261 benz_CoA_red_D benzo 22.3 99 0.0021 26.1 3.2 57 114-180 97-158 (262)
77 PRK14602 ruvA Holliday junctio 22.0 1.6E+02 0.0036 23.7 4.3 37 145-181 163-199 (203)
78 COG4728 Uncharacterized protei 21.4 1E+02 0.0022 22.2 2.5 31 47-77 9-39 (124)
No 1
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.3e-57 Score=374.38 Aligned_cols=213 Identities=37% Similarity=0.625 Sum_probs=204.4
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEF 80 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 80 (225)
|+|||||+||+++ |+|+|||+++||||||+|++.+++++.+++.+||++|++|++|+++|..+|++.+.++++.++..|
T Consensus 14 l~QveyA~~av~~-G~t~igik~~dgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~ 92 (227)
T cd03750 14 LVQIEYALAAVSS-GAPSVGIKAANGVVLATEKKVPSPLIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIAQQY 92 (227)
T ss_pred EhHHHHHHHHHHc-CCCEEEEEeCCEEEEEEeecCCccccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHHHHHHHHH
Confidence 6899999999995 999999999999999999999988988889999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHh
Q 027320 81 RFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 160 (225)
Q Consensus 81 ~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~ 160 (225)
++.+|++++++.++++|++.+|.||++++.|||+|++||||||+ .||+||++||+|++.+++++|+|+|++.++++||+
T Consensus 93 ~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~-~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~ 171 (227)
T cd03750 93 YLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDE-GGPYLYQVDPSGSYFTWKATAIGKNYSNAKTFLEK 171 (227)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeC-CCCEEEEECCCCCEEeeeEEEECCCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999996 69999999999999999999999999999999999
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHH
Q 027320 161 KMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHL 218 (225)
Q Consensus 161 ~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~vei~iv~~~~~~~~~~~~~ei~~~l 218 (225)
+| +++|+++||++++++||+.+.+++++..+++|+++++++ +|+.++++||++++
T Consensus 172 ~~--~~~ms~eeai~l~~~~l~~~~~~~l~~~~iev~iv~~~~-~~~~~~~~ei~~~~ 226 (227)
T cd03750 172 RY--NEDLELEDAIHTAILTLKEGFEGQMTEKNIEIGICGETK-GFRLLTPAEIKDYL 226 (227)
T ss_pred hc--cCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCC-CEEECCHHHHHHHh
Confidence 98 478999999999999999999988877799999999874 49999999999886
No 2
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=4.9e-56 Score=371.94 Aligned_cols=220 Identities=31% Similarity=0.502 Sum_probs=206.2
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccC-CcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHT-SVTHLFPITKYLGLLATGMTADARTLVQQARYEAAE 79 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~-~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~ 79 (225)
|||||||+||+++ |+|+|||+++||||||+|++.++.++.++ +.+|||+|+++++|+++|+.+|++.+.+.++.++..
T Consensus 18 l~QvEYA~~av~~-g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~ 96 (253)
T PTZ00246 18 LYQVEYALEAINN-ASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLYAQR 96 (253)
T ss_pred EhHHHHHHHHHHh-CCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 6999999999996 99999999999999999999996666554 689999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHH
Q 027320 80 FRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLE 159 (225)
Q Consensus 80 ~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le 159 (225)
|++.++++++++.+++.+++.+|.|++++++|||+|++||||||+++||+||++||+|++.+++++|+|+|+++++++||
T Consensus 97 ~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~~~a~G~gs~~~~~~Le 176 (253)
T PTZ00246 97 YRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWKATAIGQNNQTAQSILK 176 (253)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecceEEEECCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999657999999999999999999999999999999999
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCC----CcEEEcCHHHHHHHHHHhhc
Q 027320 160 KKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKEN----PEFRVLSIEEIDEHLTAISE 223 (225)
Q Consensus 160 ~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~-~vei~iv~~~~----~~~~~~~~~ei~~~l~~~~~ 223 (225)
+.| +++|+++||++++++||+.+.++|..++ +++|+++++++ +.|+.++++||+++|.++.+
T Consensus 177 ~~~--~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~~~~~~~l~~~ei~~~l~~~~~ 243 (253)
T PTZ00246 177 QEW--KEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPIQKMLSEKEIAELLKKVTQ 243 (253)
T ss_pred Hhc--cCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCCCCCeEECCHHHHHHHHHHHhh
Confidence 998 4789999999999999999999887654 89999999874 34999999999999998864
No 3
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=1.5e-55 Score=366.62 Aligned_cols=218 Identities=35% Similarity=0.628 Sum_probs=207.6
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEF 80 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 80 (225)
|+|||||.||+++ |+|+|||+++||||||+|++.++.+..+++.+||++|+++++|++||..+|++.+.++++.++..|
T Consensus 23 ~~Q~eya~~av~~-G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 101 (241)
T PRK03996 23 LYQVEYAREAVKR-GTTAVGVKTKDGVVLAVDKRITSPLIEPSSIEKIFKIDDHIGAASAGLVADARVLIDRARVEAQIN 101 (241)
T ss_pred EhHHHHHHHHHHh-CCCEEEEEeCCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEcccHHHHHHHHHHHHHHHHHH
Confidence 6899999999995 999999999999999999999988888889999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHh
Q 027320 81 RFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 160 (225)
Q Consensus 81 ~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~ 160 (225)
++.++++++++.++++|++.+|.|+++++.|||+|++||||||+ .||+||.+||+|++.+++++|+|.+++.++++||+
T Consensus 102 ~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~-~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~ 180 (241)
T PRK03996 102 RLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGAYLEYKATAIGAGRDTVMEFLEK 180 (241)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeC-CcCEEEEECCCCCeecceEEEECCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999997 68999999999999999999999999999999999
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHHhh
Q 027320 161 KMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 222 (225)
Q Consensus 161 ~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~vei~iv~~~~~~~~~~~~~ei~~~l~~~~ 222 (225)
.| +++|+++||++++++||+.+.+++.+..+++|+++++++++|+.++++||+++++++.
T Consensus 181 ~~--~~~~s~eeai~l~~~al~~~~~~~~~~~~i~i~ii~~~~~~~~~~~~~ei~~~~~~~~ 240 (241)
T PRK03996 181 NY--KEDLSLEEAIELALKALAKANEGKLDPENVEIAYIDVETKKFRKLSVEEIEKYLEKLL 240 (241)
T ss_pred hc--ccCCCHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCcEEECCHHHHHHHHHHhh
Confidence 98 4789999999999999999998766556899999999987899999999999998763
No 4
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-56 Score=342.98 Aligned_cols=216 Identities=31% Similarity=0.576 Sum_probs=204.6
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEF 80 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 80 (225)
|||||||.+|++ .|+|.|||+.++||||+++||.+++|..++.+.||++|++||+|++||+.+|++.+++++|.+|++|
T Consensus 21 lfQVEYaieAik-LGsTaIGv~TkEgVvL~vEKritSpLm~p~sveKi~eid~HIgca~SGl~aDarTlve~arv~~qnh 99 (241)
T KOG0176|consen 21 LFQVEYAIEAIK-LGSTAIGVKTKEGVVLAVEKRITSPLMEPSSVEKIVEIDDHIGCAMSGLIADARTLVERARVETQNH 99 (241)
T ss_pred eeehhhHHHHHh-cCCceeeeeccceEEEEEeccccCcccCchhhhhheehhhceeeeccccccchHHHHHHHHHHhhhc
Confidence 799999999999 5999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHhhhc-----cCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHH
Q 027320 81 RFKYGYEMPVDVLAKWIADKSQVYTQH-----AYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAI 155 (225)
Q Consensus 81 ~~~~~~~~~~~~la~~ls~~~~~~t~~-----~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~ 155 (225)
++.||++|+++.+.+.+|++.-.|-.. .-.|||||++|+||+|+ .||+||..||+|++.+|++-|||+|+..+.
T Consensus 100 ~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~-~gpqL~h~dPSGtf~~~~AKAIGSgsEga~ 178 (241)
T KOG0176|consen 100 WFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDE-TGPQLYHLDPSGTFIRYKAKAIGSGSEGAE 178 (241)
T ss_pred eeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccC-CCceEEEeCCCCceEEecceeccccchHHH
Confidence 999999999999999999998777543 12489999999999996 899999999999999999999999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHHh
Q 027320 156 NFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 221 (225)
Q Consensus 156 ~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~vei~iv~~~~~~~~~~~~~ei~~~l~~~ 221 (225)
+.|++.|+ ++|+++||+.+++..|+++++..+++.|+++++|++++ +|+.++++|++.++.++
T Consensus 179 ~~L~~e~~--~~ltL~ea~~~~L~iLkqVMeeKl~~~Nvev~~vt~e~-~f~~~t~EE~~~~i~~~ 241 (241)
T KOG0176|consen 179 SSLQEEYH--KDLTLKEAEKIVLKILKQVMEEKLNSNNVEVAVVTPEG-EFHIYTPEEVEQVIKRL 241 (241)
T ss_pred HHHHHHHh--hcccHHHHHHHHHHHHHHHHHHhcCccceEEEEEcccC-ceEecCHHHHHHHHhcC
Confidence 99999984 68999999999999999999999999999999999997 49999999999988653
No 5
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-55 Score=344.72 Aligned_cols=218 Identities=33% Similarity=0.515 Sum_probs=207.6
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEF 80 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 80 (225)
|||||||++||++ |+|+||++++|+|||+.++++..+|.+.+...||..+++|++|+++|+.+|++.+++++|.+|+.|
T Consensus 17 L~QVEYAqEAvrk-GstaVgvrg~~~vvlgvEkkSv~~Lq~~r~~rkI~~ld~hV~mafaGl~aDArilinrArvecqSh 95 (249)
T KOG0183|consen 17 LFQVEYAQEAVRK-GSTAVGVRGNNCVVLGVEKKSVPKLQDERTVRKISMLDDHVVMAFAGLTADARILINRARVECQSH 95 (249)
T ss_pred EEeeHhHHHHHhc-CceEEEeccCceEEEEEeecchhhhhhhhhhhhheeecceeeEEecCCCccceeehhhHhHhhhhh
Confidence 7999999999996 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHh
Q 027320 81 RFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 160 (225)
Q Consensus 81 ~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~ 160 (225)
+++.+.|++++.++++|+.+.|.|||..+.||||++.||+|||+++.|+||++||+|.+++|++.|||.+++.++.||||
T Consensus 96 rlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~aiGr~sk~VrEflEK 175 (249)
T KOG0183|consen 96 RLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKANAIGRSSKTVREFLEK 175 (249)
T ss_pred hcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhccccccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHHhh
Q 027320 161 KMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 222 (225)
Q Consensus 161 ~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~vei~iv~~~~~~~~~~~~~ei~~~l~~~~ 222 (225)
+|...+-.+..++++|++++|.++.. ....++|++++++.+. ++.+++++|+.++..+.
T Consensus 176 ~y~e~~~~~~~~~ikL~ir~LleVvq--s~~~nie~aVm~~~~~-~~~l~~~~I~~~v~~ie 234 (249)
T KOG0183|consen 176 NYKEEAIATEGETIKLAIRALLEVVQ--SGGKNIEVAVMKRRKD-LKMLESEEIDDIVKEIE 234 (249)
T ss_pred hcccccccccccHHHHHHHHHHHHhh--cCCCeeEEEEEecCCc-eeecCHHHHHHHHHHHH
Confidence 99766668999999999999998884 3345899999999875 99999999999998776
No 6
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-54 Score=356.15 Aligned_cols=218 Identities=37% Similarity=0.639 Sum_probs=204.6
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAE 79 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~ 79 (225)
++|+|||.+++++.|+|+|||+++||||||+|+|.+ +.++..++++|||+|+||++|++||+.+|++.++++++.+++.
T Consensus 16 l~q~e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~~ 95 (236)
T COG0638 16 LFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYARAEAQL 95 (236)
T ss_pred hHHHHHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHHHHHHHHHHHHHH
Confidence 579999999999867999999999999999999999 4555666799999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHH
Q 027320 80 FRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLE 159 (225)
Q Consensus 80 ~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le 159 (225)
|++.+|++|+++.+++.+++++|.|+++ .|||+|++|+||+|+ ++|+||++||+|++.+++++|+|+|++.++++||
T Consensus 96 ~~~~~~~~i~v~~la~~ls~~l~~~~~~--~rP~gv~~iiaG~d~-~~p~Ly~~Dp~G~~~~~~~~a~Gsgs~~a~~~Le 172 (236)
T COG0638 96 YRLRYGEPISVEALAKLLSNILQEYTQS--GRPYGVSLLVAGVDD-GGPRLYSTDPSGSYNEYKATAIGSGSQFAYGFLE 172 (236)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHhccC--cccceEEEEEEEEcC-CCCeEEEECCCCceeecCEEEEcCCcHHHHHHHH
Confidence 9999999999999999999999999987 899999999999998 8999999999999999999999999999999999
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHhhhccCCC-CcEEEEEEEcCCCcEEEcCHHHHHHHHHHhhcc
Q 027320 160 KKMKNDPAFTFQETVQTAISTLQSVLQEDFKA-SEIEVGVVSKENPEFRVLSIEEIDEHLTAISER 224 (225)
Q Consensus 160 ~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~-~~vei~iv~~~~~~~~~~~~~ei~~~l~~~~~~ 224 (225)
+.| +++|+.|||++++++||+.+.+||..+ ++++|+++++++ +++.++++++..++..+.++
T Consensus 173 ~~y--~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~-~~~~~~~~~~~~~~~~~~~~ 235 (236)
T COG0638 173 KEY--REDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDE-GFRKLDGEEIKKLLDDLSEK 235 (236)
T ss_pred hhc--cCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCC-CeEEcCHHHHHHHHHHHhhc
Confidence 998 578999999999999999999999855 478999999974 59999999999999887754
No 7
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.9e-54 Score=354.12 Aligned_cols=199 Identities=69% Similarity=1.051 Sum_probs=188.7
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEF 80 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 80 (225)
|+|||||+||+++.|+|+|||+++||||||+|++.++.++.+++.+|||+|+++++|++||+.+|++.+.++++.++..|
T Consensus 15 l~Qveya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~ 94 (215)
T cd03754 15 LYQVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPDKLIDPSTVTHLFRITDEIGCVMTGMIADSRSQVQRARYEAAEF 94 (215)
T ss_pred EeHHHhHHHHHhcCCccEEEEEeCCEEEEEEeccccccccCCcccCceEEEcCCEEEEEEechhhHHHHHHHHHHHHHHH
Confidence 68999999999876889999999999999999999977777778899999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHh
Q 027320 81 RFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 160 (225)
Q Consensus 81 ~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~ 160 (225)
+++++++|+++.+|++|++++|.||++++.|||+|++|+||||+++||+||++||+|++.+++++|+|+|++.++++||+
T Consensus 95 ~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a~G~gs~~~~~~Le~ 174 (215)
T cd03754 95 KYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATAAGVKEQEATNFLEK 174 (215)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEEECCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999997679999999999999999999999999999999999
Q ss_pred hccCCCCC--CHHHHHHHHHHHHHHhhhccCCCCcEEEEEE
Q 027320 161 KMKNDPAF--TFQETVQTAISTLQSVLQEDFKASEIEVGVV 199 (225)
Q Consensus 161 ~~~~~~~~--s~eea~~l~~~~l~~~~~~d~~~~~vei~iv 199 (225)
.|++..+| |.|||++++++||+.+.+||+...++||+||
T Consensus 175 ~~~~~~~~~~s~eeai~l~~~al~~~~~rd~~~~~~ei~~~ 215 (215)
T cd03754 175 KLKKKPDLIESYEETVELAISCLQTVLSTDFKATEIEVGVV 215 (215)
T ss_pred HhccccccCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEC
Confidence 99654468 9999999999999999999988668999985
No 8
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=6.8e-54 Score=353.13 Aligned_cols=208 Identities=38% Similarity=0.648 Sum_probs=197.3
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEF 80 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 80 (225)
|+|||||+||+++ |+|+|||+++||||||+|++.++.++.+++.+||++|+++++|++||..+|++.+.+.++.++..|
T Consensus 16 l~Qieya~~av~~-G~tvigi~~~dgvvlaad~r~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 94 (224)
T TIGR03633 16 LYQVEYAREAVKR-GTTAVGIKTKDGVVLAVDKRITSKLVEPSSIEKIFKIDDHIGAATSGLVADARVLIDRARIEAQIN 94 (224)
T ss_pred EeHHHHHHHHHHc-CCCEEEEEECCEEEEEEeccCCccccCCCccceEEEECCCEEEEEeecHHhHHHHHHHHHHHHHHH
Confidence 6899999999995 999999999999999999999988888889999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHh
Q 027320 81 RFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 160 (225)
Q Consensus 81 ~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~ 160 (225)
+++++++++++.++++|++.+|.|+++++.|||+|++||||+|+ ++|+||.+||.|++.+++++|+|+++.+++++|++
T Consensus 95 ~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~-~~~~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~ 173 (224)
T TIGR03633 95 RLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGALLEYKATAIGAGRQAVTEFLEK 173 (224)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeC-CcCEEEEECCCCCeecceEEEECCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999996 79999999999999999999999999999999999
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHhhhccCCC-CcEEEEEEEcCCCcEEEcCHHH
Q 027320 161 KMKNDPAFTFQETVQTAISTLQSVLQEDFKA-SEIEVGVVSKENPEFRVLSIEE 213 (225)
Q Consensus 161 ~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~-~~vei~iv~~~~~~~~~~~~~e 213 (225)
.| +|+|+++||++++++||+.+.+ |..+ ++++|++|+++++.|+.++++|
T Consensus 174 ~~--~~~~~~eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~~~~~~~~~~ 224 (224)
T TIGR03633 174 EY--REDLSLDEAIELALKALYSAVE-DKLTPENVEVAYITVEDKKFRKLSVEE 224 (224)
T ss_pred hc--cCCCCHHHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCCcEEECCCCC
Confidence 98 4789999999999999999997 6444 5799999999987799988765
No 9
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.5e-54 Score=349.12 Aligned_cols=195 Identities=35% Similarity=0.492 Sum_probs=185.8
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEF 80 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 80 (225)
|+|||||+||+++ |+|+|||+++||||||+|++.++.+..+++.+|||+|++|++|++||+.+|++.+.++++.++..|
T Consensus 17 l~Qveya~~a~~~-G~tvIgik~kdgVvla~d~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y 95 (212)
T cd03751 17 VFQVEYANKAVEN-SGTAIGIRCKDGVVLAVEKLVTSKLYEPGSNKRIFNVDRHIGIAVAGLLADGRHLVSRAREEAENY 95 (212)
T ss_pred chHHHHHHHHHhc-CCCEEEEEeCCEEEEEEEccccccccCcchhcceeEecCcEEEEEEEChHhHHHHHHHHHHHHHHH
Confidence 6999999999996 999999999999999999999988888788999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHh
Q 027320 81 RFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 160 (225)
Q Consensus 81 ~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~ 160 (225)
++.+|++++++.++++|++++|.|++++++|||+|++|+||||+ +||+||++||+|++.+++++|+|+++.+++++||+
T Consensus 96 ~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~-~gp~Ly~~D~~Gs~~~~~~~a~G~g~~~a~~~Lek 174 (212)
T cd03751 96 RDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDS-DGPQLYMIEPSGVSYGYFGCAIGKGKQAAKTELEK 174 (212)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeC-CcCEEEEECCCCCEEeeEEEEECCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999996 68999999999999999999999999999999999
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHhhhc-cCCCCcEEEEEE
Q 027320 161 KMKNDPAFTFQETVQTAISTLQSVLQE-DFKASEIEVGVV 199 (225)
Q Consensus 161 ~~~~~~~~s~eea~~l~~~~l~~~~~~-d~~~~~vei~iv 199 (225)
.| +++||++||+++++++|+.+++. ++...+|||+++
T Consensus 175 ~~--~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 175 LK--FSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred hc--cCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 98 47899999999999999999984 466678999875
No 10
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.8e-53 Score=346.64 Aligned_cols=194 Identities=34% Similarity=0.558 Sum_probs=184.7
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEF 80 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 80 (225)
|+|||||.+|+++ |+|+|||+++||||||+|++..+.++.++..+||++|++|++|++||+.+|++.+.++++.++..|
T Consensus 14 ~~Qveya~~av~~-G~t~Igik~~dgVvlaad~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~ 92 (207)
T cd03755 14 LFQVEYAQEAVRK-GTTAVGVRGKDCVVLGVEKKSVAKLQDPRTVRKICMLDDHVCLAFAGLTADARVLINRARLECQSH 92 (207)
T ss_pred EeHHHHHHHHHHc-CCCEEEEEeCCEEEEEEecCCCCcccCCCccCcEEEECCCEEEEEecchhhHHHHHHHHHHHHHHH
Confidence 6899999999995 999999999999999999998888887788999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHh
Q 027320 81 RFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 160 (225)
Q Consensus 81 ~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~ 160 (225)
++++|++|+++.++++|++++|+|++++++|||+|++|+||||+++||+||++||+|++.+++++|+|+|++.++++||+
T Consensus 93 ~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~ 172 (207)
T cd03755 93 RLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAIGRNSKTVREFLEK 172 (207)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEECCCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999997679999999999999999999999999999999999
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEE
Q 027320 161 KMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVV 199 (225)
Q Consensus 161 ~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~vei~iv 199 (225)
+| +|+|+++||++++++||+.+.+ .+..++||+++
T Consensus 173 ~~--~~~ms~eeai~l~~~~l~~~~~--~~~~~~e~~~~ 207 (207)
T cd03755 173 NY--KEEMTRDDTIKLAIKALLEVVQ--SGSKNIELAVM 207 (207)
T ss_pred hc--cCCCCHHHHHHHHHHHHHHHhC--CCCCeEEEEEC
Confidence 99 4789999999999999999996 55568999875
No 11
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.9e-53 Score=346.89 Aligned_cols=196 Identities=29% Similarity=0.510 Sum_probs=185.4
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccC-CcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHT-SVTHLFPITKYLGLLATGMTADARTLVQQARYEAAE 79 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~-~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~ 79 (225)
|+|||||.||+++ |+|+|||+++||||||+|++.+++++..+ +.+||++|++|++|++||+.+|++.+.++++.++..
T Consensus 16 l~Qveya~~a~~~-G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~ 94 (213)
T cd03752 16 LYQVEYAMEAISH-AGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYARLIAQR 94 (213)
T ss_pred EhHHHhHHHHHhc-CCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHHHHHHHHHHHHH
Confidence 6899999999996 99999999999999999999996666554 899999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHH
Q 027320 80 FRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLE 159 (225)
Q Consensus 80 ~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le 159 (225)
|++++|++|+++.+++.|+..+|.||++++.|||+|++|++|||++.||+||.+||+|++.+++++|+|+++..++++||
T Consensus 95 ~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le 174 (213)
T cd03752 95 YLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKATAIGNNNQAAQSLLK 174 (213)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEEEECCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999757999999999999999999999999999999999
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHhhhccCCC-CcEEEEEE
Q 027320 160 KKMKNDPAFTFQETVQTAISTLQSVLQEDFKA-SEIEVGVV 199 (225)
Q Consensus 160 ~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~-~~vei~iv 199 (225)
++| +|+|+++||++++++||+.+.+|+... .+++|+++
T Consensus 175 ~~y--~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 175 QDY--KDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred Hhc--cCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 998 489999999999999999999988544 58999875
No 12
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4e-53 Score=345.45 Aligned_cols=196 Identities=31% Similarity=0.567 Sum_probs=185.2
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEF 80 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 80 (225)
|+|||||++|+++ |+|+|||+++||||||+|++.++.+. ++.+|||+|+++++|++||+.+|++.+.++++.++..|
T Consensus 14 l~Qveya~~av~~-G~t~IgIk~~dgVvlaad~r~~~~l~--~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~ 90 (211)
T cd03749 14 LFQVEYAMEAVKQ-GSATVGLKSKTHAVLVALKRATSELS--SYQKKIFKVDDHIGIAIAGLTADARVLSRYMRQECLNY 90 (211)
T ss_pred EeHHHHHHHHHhc-CCCEEEEEeCCEEEEEEeccCccccC--CccccEEEeCCCEEEEEEeChHhHHHHHHHHHHHHHHH
Confidence 6899999999996 99999999999999999999887653 46699999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHh
Q 027320 81 RFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 160 (225)
Q Consensus 81 ~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~ 160 (225)
+++++++++++.+++++++.+|.||++.+.|||+|++||+|||+ .||+||++||+|++.+++++|+|++++.++++||+
T Consensus 91 ~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~-~gp~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~Le~ 169 (211)
T cd03749 91 RFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDE-SGPHLFQTCPSGNYFEYKATSIGARSQSARTYLER 169 (211)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcC-CCCeEEEECCCcCEeeeeEEEECCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999996 68999999999999999999999999999999999
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHhhhcc--CCCCcEEEEEEE
Q 027320 161 KMKNDPAFTFQETVQTAISTLQSVLQED--FKASEIEVGVVS 200 (225)
Q Consensus 161 ~~~~~~~~s~eea~~l~~~~l~~~~~~d--~~~~~vei~iv~ 200 (225)
+|+++++|+++|++++++++|+.++++| ++..+|||++++
T Consensus 170 ~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 170 HFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred hhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 9976689999999999999999999876 566689999984
No 13
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-53 Score=329.74 Aligned_cols=225 Identities=67% Similarity=1.007 Sum_probs=220.2
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEF 80 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 80 (225)
|+|||||.||+++.|-|.||++++|++|+++.|+.+.+|++++++..+|+|..+++|+++|..+|++..++++|.++.++
T Consensus 22 LyQVEYafkAin~~gltsVavrgkDcavvvsqKkvpDKLld~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~eAa~~ 101 (246)
T KOG0182|consen 22 LYQVEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVPDKLLDSSTVTHLFRITKKIGCVITGMIADARSQVQRARYEAAEF 101 (246)
T ss_pred EEeeehHHHHhhcCCCceEEEcCCceEEEEecccCcccccccccceeEEEeeccceEEEecCCcchHHHHHHHHHHHHhh
Confidence 69999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHh
Q 027320 81 RFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 160 (225)
Q Consensus 81 ~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~ 160 (225)
++.||.+||++.||++++++.|.|||+..+||+||.+++.|+|++.||.+|.+||.|.+..++++|.|...+.+.++||+
T Consensus 102 ~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~kAtaaG~Kq~e~tsfLEK 181 (246)
T KOG0182|consen 102 RYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFKATAAGVKQQEATSFLEK 181 (246)
T ss_pred hhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCccccccceeeecccchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHHhhccC
Q 027320 161 KMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD 225 (225)
Q Consensus 161 ~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~vei~iv~~~~~~~~~~~~~ei~~~l~~~~~~~ 225 (225)
+|+++.+++.+|++++++.||..++.-|..+..+||++++++.++|+.|+.+||++.|.+|.+||
T Consensus 182 k~Kk~~~~t~~e~ve~ai~al~~sl~~Dfk~se~EVgvv~~~~p~f~~Ls~~eie~hL~~IAEkd 246 (246)
T KOG0182|consen 182 KYKKDIDLTFEETVETAISALQSSLGIDFKSSELEVGVVTVDNPEFRILSAEEIEEHLQAIAEKD 246 (246)
T ss_pred hhccCccchHHHHHHHHHHHHHHHHhcccCCcceEEEEEEcCCcceeeccHHHHHHHHHHhhhcC
Confidence 99877789999999999999999998899999999999999998999999999999999999998
No 14
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-53 Score=327.69 Aligned_cols=215 Identities=35% Similarity=0.575 Sum_probs=207.3
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEF 80 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 80 (225)
|-|+|||+.||.+ |.+.|||+-.||||||++++..+.|++.+.++|+++|.+||+|.+||+.+|++.+++..|+.++.|
T Consensus 19 L~QieyAL~Av~~-G~~SvGi~A~nGvVlatekk~~s~L~~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe~Y 97 (233)
T KOG0181|consen 19 LVQIEYALTAVVN-GQTSVGIKAANGVVLATEKKDVSPLVDEESVRKVEKITPHIGCVYSGMGPDYRVLVHKSRKIAEQY 97 (233)
T ss_pred eehHHHHHHHHhC-CCCceeeeecCceEEEeccCCCCccchhhhhhhHhhccCCcceEEecCCCceeehhhHHHHHHHHH
Confidence 5699999999995 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHh
Q 027320 81 RFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 160 (225)
Q Consensus 81 ~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~ 160 (225)
...|+++||+..|...++..+|+|||..+.||||+++++||||+ ++|.||++||+|+++.|+++|+|.+...+++|||+
T Consensus 98 y~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~-~~p~LyQvdPSGsyf~wkatA~Gkn~v~aktFlEk 176 (233)
T KOG0181|consen 98 YRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDE-GGPLLYQVDPSGSYFAWKATAMGKNYVNAKTFLEK 176 (233)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCC-CceeEEEECCccceeehhhhhhccCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999997 79999999999999999999999999999999999
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHHh
Q 027320 161 KMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 221 (225)
Q Consensus 161 ~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~vei~iv~~~~~~~~~~~~~ei~~~l~~~ 221 (225)
+| +++|.+++++..|+..|++..+..+++.|+||+++..+ .|++++++||+++|..+
T Consensus 177 R~--~edleldd~ihtailtlkE~fege~~~~nieigv~~~~--~F~~lt~~eI~d~l~~l 233 (233)
T KOG0181|consen 177 RY--NEDLELDDAIHTAILTLKESFEGEMTAKNIEIGVCGEN--GFRRLTPAEIEDYLASL 233 (233)
T ss_pred Hh--ccccccchHHHHHHHHHHHHhccccccCceEEEEecCC--ceeecCHHHHHHHHhcC
Confidence 98 68999999999999999999999999999999999855 49999999999999754
No 15
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4e-52 Score=339.69 Aligned_cols=196 Identities=36% Similarity=0.631 Sum_probs=188.1
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEF 80 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 80 (225)
|+|+|||.||+++ |+|+|||+++||||||+|++.++.++.+++.+||++|+++++|++||+.+|++.+.+.++.++..|
T Consensus 15 l~Q~eya~~av~~-G~t~igik~~dgvvla~d~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~ 93 (211)
T cd03756 15 LYQVEYAREAVKR-GTTALGIKCKEGVVLAVDKRITSKLVEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQIH 93 (211)
T ss_pred EhHHHHHHHHHHc-CCCEEEEEECCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHH
Confidence 6899999999995 999999999999999999999988888889999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHh
Q 027320 81 RFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 160 (225)
Q Consensus 81 ~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~ 160 (225)
+++++++++++.++++|++.+|.|++++++|||++++||||||+ .+|+||++||+|++.+++++|+|++++.++++||+
T Consensus 94 ~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~-~~~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~ 172 (211)
T cd03756 94 RLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGAYNEYKATAIGSGRQAVTEFLEK 172 (211)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeC-CCCEEEEECCCCCeeeeEEEEECCCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999997 79999999999999999999999999999999999
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEE
Q 027320 161 KMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVS 200 (225)
Q Consensus 161 ~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~vei~iv~ 200 (225)
.| +|+|+++||++++++||..+.+++....+++|++|+
T Consensus 173 ~~--~~~m~~~ea~~l~~~~l~~~~~~~~~~~~~~v~ii~ 210 (211)
T cd03756 173 EY--KEDMSLEEAIELALKALYAALEENETPENVEIAYVT 210 (211)
T ss_pred hc--cCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEe
Confidence 99 479999999999999999999888855689999986
No 16
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-52 Score=326.42 Aligned_cols=218 Identities=32% Similarity=0.464 Sum_probs=202.3
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEF 80 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 80 (225)
+||||||+|||.| |+|||||+||||||+++||..+|+|+.+....|||.|++||+|+++|+.+|.+.+.+++|.++.+|
T Consensus 21 vfQveYA~KAven-~~T~IGIk~kdGVVl~vEKli~SkLy~p~sn~ri~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~ 99 (254)
T KOG0184|consen 21 VFQVEYAQKAVEN-SGTCIGIKCKDGVVLAVEKLITSKLYEPGSNERIFSVDRHIGMAVAGLIPDGRHLVNRARDEAASW 99 (254)
T ss_pred eehHHHHHHHHhc-CCcEEEEecCCeEEEEEeeeecccccccCCCCceEeecccccEEEeccccchHHHHHHHHHHHHHH
Confidence 6999999999996 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHh
Q 027320 81 RFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 160 (225)
Q Consensus 81 ~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~ 160 (225)
+.+|+.|+|...++..+++++|.||.++..||||++.++++||. +||+||.+||+|..+.|+++|+|.|.|.+++.|||
T Consensus 100 ~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~-~g~~LymiepSG~~~~Y~~aaiGKgrq~aKtElEK 178 (254)
T KOG0184|consen 100 RKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDD-EGPQLYMIEPSGSSYGYKGAAIGKGRQAAKTELEK 178 (254)
T ss_pred HHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeC-CCceEEEEcCCCCccceeeeeccchhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999995 89999999999999999999999999999999999
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHhhhccC-CCCcEEEEEEEcCCCcEEEcCHHHHHHHHHHhh
Q 027320 161 KMKNDPAFTFQETVQTAISTLQSVLQEDF-KASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 222 (225)
Q Consensus 161 ~~~~~~~~s~eea~~l~~~~l~~~~~~d~-~~~~vei~iv~~~~~~~~~~~~~ei~~~l~~~~ 222 (225)
+- ..+|+.+|+++.+.+.|+.+++..- ....+||.|+..+.++.+..-|+|+.+..++..
T Consensus 179 L~--~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG~h~~vp~el~~ea~~~a 239 (254)
T KOG0184|consen 179 LK--IDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNGLHEKVPSELLEEAEKYA 239 (254)
T ss_pred cc--cccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCCccccCcHHHHHHHHHHH
Confidence 83 5689999999999999999886532 334799999998876677777778877766554
No 17
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-51 Score=322.11 Aligned_cols=221 Identities=30% Similarity=0.522 Sum_probs=206.9
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccC-CcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHT-SVTHLFPITKYLGLLATGMTADARTLVQQARYEAAE 79 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~-~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~ 79 (225)
|+|||||++++.++| |+|||.++||||||++++.+++|++.. ..+||++|+||++|+++|+++|+..+++.+|..+++
T Consensus 18 LyQVEyAmeais~aG-t~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~ 96 (249)
T KOG0178|consen 18 LYQVEYAMEAISHAG-TCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSDANVLKNYARIIAQR 96 (249)
T ss_pred hHHHHHHHHHHhhhc-ceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccccHHHHHHHHHHHHHH
Confidence 689999999999866 999999999999999999999999765 789999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHH
Q 027320 80 FRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLE 159 (225)
Q Consensus 80 ~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le 159 (225)
|.+++|++||++.|++.+++++|.|||+.+.||||||+|.+|||...|.+||+.||+|++..|++.++|.++..+.+.|.
T Consensus 97 yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka~ciG~N~~Aa~s~Lk 176 (249)
T KOG0178|consen 97 YLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKATCIGANSGAAQSMLK 176 (249)
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccccceeeeccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999877999999999999999999999999999999999
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHhhhcc-CCCCcEEEEEEEcCCC--cEEEcCHHHHHHHHHHhhc
Q 027320 160 KKMKNDPAFTFQETVQTAISTLQSVLQED-FKASEIEVGVVSKENP--EFRVLSIEEIDEHLTAISE 223 (225)
Q Consensus 160 ~~~~~~~~~s~eea~~l~~~~l~~~~~~d-~~~~~vei~iv~~~~~--~~~~~~~~ei~~~l~~~~~ 223 (225)
.-|++ ..++++||+.+|++.|...++.. +.+..+||+.++++.+ -++.++++||..+|+++.+
T Consensus 177 qdykd-d~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~v~~i~~~~ev~kll~k~~~ 242 (249)
T KOG0178|consen 177 QDYKD-DENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKTVLKILKKDEVLKLLEKYHE 242 (249)
T ss_pred hhhcc-ccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCceEEEecCHHHHHHHHHHhhh
Confidence 99853 45679999999999999999875 6667899999998854 2788999999999998863
No 18
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=3.1e-51 Score=334.02 Aligned_cols=196 Identities=47% Similarity=0.778 Sum_probs=186.5
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEF 80 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 80 (225)
|+|||||+|++++ |+|+|||+++||||||+|++.++.++..++.+||++|+++++|++||..+|++.+.+.++.++..|
T Consensus 14 ~~q~eya~~~~~~-G~tvigi~~~dgVvlaaD~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~ 92 (209)
T cd01911 14 LFQVEYALEAVKN-GSTAVGIKGKDGVVLAVEKKVTSKLLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQNY 92 (209)
T ss_pred EeHHHHHHHHHHc-CCCEEEEEECCEEEEEEEecCCccccCCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHHHH
Confidence 6899999999985 999999999999999999999977777788999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHh
Q 027320 81 RFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 160 (225)
Q Consensus 81 ~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~ 160 (225)
++.+|++++++.++++|++++|.|+++++.|||+|++||||||+++||+||.+||.|++.+++++|+|.++..++++||+
T Consensus 93 ~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~L~~ 172 (209)
T cd01911 93 RYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIGKGSQEAKTFLEK 172 (209)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEeCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998669999999999999999999999999999999999
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEE
Q 027320 161 KMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVV 199 (225)
Q Consensus 161 ~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~vei~iv 199 (225)
.| +|+|+++||++++++||+.+.+||+...+++|+++
T Consensus 173 ~~--~~~ms~~ea~~l~~~~l~~~~~~d~~~~~~~i~i~ 209 (209)
T cd01911 173 RY--KKDLTLEEAIKLALKALKEVLEEDKKAKNIEIAVV 209 (209)
T ss_pred hc--ccCCCHHHHHHHHHHHHHHHHhccCCCCcEEEEEC
Confidence 99 48899999999999999999999994347999874
No 19
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.2e-51 Score=333.58 Aligned_cols=195 Identities=32% Similarity=0.591 Sum_probs=184.4
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEF 80 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 80 (225)
|+|||||++|+++ |+|+|||+++||||||+|++.++.+...++.+||++|+++++|++||+.+|++.+.+.++.+++.|
T Consensus 14 ~~Q~eya~~a~~~-G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~ 92 (213)
T cd03753 14 LFQVEYAIEAIKL-GSTAIGIKTKEGVVLAVEKRITSPLMEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQNH 92 (213)
T ss_pred EhHHHHHHHHHhc-CCCEEEEEeCCEEEEEEecccCCcCcCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHH
Confidence 6899999999995 999999999999999999999877877788999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHhhhc-----cCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHH
Q 027320 81 RFKYGYEMPVDVLAKWIADKSQVYTQH-----AYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAI 155 (225)
Q Consensus 81 ~~~~~~~~~~~~la~~ls~~~~~~t~~-----~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~ 155 (225)
++.+|++++++.++++|++.+|.|++. ++.|||+|++||||||+ +||+||.+||+|++.+++++|+|++++.++
T Consensus 93 ~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~-~gp~Ly~vd~~G~~~~~~~~a~G~~~~~~~ 171 (213)
T cd03753 93 RFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDE-NGPQLFHTDPSGTFTRCDAKAIGSGSEGAQ 171 (213)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcC-CCCEEEEECCCCCeecccEEEECCCcHHHH
Confidence 999999999999999999999999874 34799999999999996 799999999999999999999999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEE
Q 027320 156 NFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVV 199 (225)
Q Consensus 156 ~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~vei~iv 199 (225)
++|+++| +++|+++||++++++||+.+.+++++..++||+++
T Consensus 172 ~~L~~~~--~~~ls~eeai~l~~~~l~~~~~~~~~~~~~ei~~~ 213 (213)
T cd03753 172 SSLQEKY--HKDMTLEEAEKLALSILKQVMEEKLNSTNVELATV 213 (213)
T ss_pred HHHHhhc--cCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEC
Confidence 9999998 47899999999999999999888877789999975
No 20
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-49 Score=313.35 Aligned_cols=216 Identities=31% Similarity=0.525 Sum_probs=204.9
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEF 80 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 80 (225)
|||||||++|+|+ |++.||+++++..||++-++..+.|. +.++|||+||+|++++++|+++|++.+.++++.+|..+
T Consensus 19 l~QvEya~Eavkq-GsatVGLks~thaVLvAl~r~~seLs--s~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ec~~~ 95 (264)
T KOG0863|consen 19 LHQVEYAMEAVKQ-GSATVGLKSRTHAVLVALKRAQSELS--SHQKKIFKIDDHIGISIAGLTADARVLSRYLRQECLNS 95 (264)
T ss_pred ehHHHHHHHHHhc-ccceEeecccceEEEeeeccchhHHH--HhhheeEecccccceEEeccCcchHHHHHHHHHHHhhh
Confidence 6999999999996 99999999999999999999888875 46899999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHh
Q 027320 81 RFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 160 (225)
Q Consensus 81 ~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~ 160 (225)
++.+++++|+..|...|.+.+|..||+.+.|||||.++++|+|+ .||+||+++|+|++.++++.+||+.||.++++||+
T Consensus 96 ~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe-~G~hl~e~~Psg~v~e~~g~sIGsRSQsARTyLEr 174 (264)
T KOG0863|consen 96 RFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDE-SGPHLYEFCPSGNVFECKGMSIGSRSQSARTYLER 174 (264)
T ss_pred hhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecC-CCceeEEEcCCccEEEEeeeecccchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999997 89999999999999999999999999999999999
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHhhhc--cCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHHh
Q 027320 161 KMKNDPAFTFQETVQTAISTLQSVLQE--DFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 221 (225)
Q Consensus 161 ~~~~~~~~s~eea~~l~~~~l~~~~~~--d~~~~~vei~iv~~~~~~~~~~~~~ei~~~l~~~ 221 (225)
+...+++++.||.+..++.||+..+.. +++..+++|+|+.+|.+ |+.++.+++.+++...
T Consensus 175 ~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~p-f~~~d~~~~~k~~~~~ 236 (264)
T KOG0863|consen 175 NLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEP-FTILDQKDVAKYVDLF 236 (264)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCc-eEeecHHHHHHHHHHh
Confidence 998889999999999999999999984 46677999999999987 9999999999776544
No 21
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=1.1e-48 Score=321.88 Aligned_cols=204 Identities=17% Similarity=0.222 Sum_probs=183.5
Q ss_pred hhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHH
Q 027320 4 IEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFK 83 (225)
Q Consensus 4 vEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~ 83 (225)
=|||+||+++ |+|+|||+++||||||+|++. ++.+|||+|+||++|+++|+.+|++.+++.++.++..|++.
T Consensus 17 ~EYA~kav~~-g~T~VGIk~kdgVVLaaek~~-------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~ 88 (228)
T TIGR03691 17 AELARKGIAR-GRSVVVLTYADGILFVAENPS-------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYS 88 (228)
T ss_pred HHHHHHHHHc-CCcEEEEEeCCeEEEEEecCC-------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhh
Confidence 3999999996 999999999999999999973 46789999999999999999999999999999999999999
Q ss_pred cC-CCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeC-CCCcEEEEECCCCceecce-EEeccCChHHHHHHHHh
Q 027320 84 YG-YEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDE-ECGPRLFKCDPAGHFFGHK-ATSAGLKEQEAINFLEK 160 (225)
Q Consensus 84 ~~-~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~-~~gp~Ly~id~~G~~~~~~-~~aiG~gs~~~~~~Le~ 160 (225)
++ .+++++.++++++.....++ +++.|||+|++|+||||+ +.||+||++||+|++.+++ ++|+|++++.+.++||+
T Consensus 89 ~~~~~~~v~~la~~~tq~~~~~~-~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek 167 (228)
T TIGR03691 89 YDRRDVTGRGLANAYAQTLGTIF-TEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKE 167 (228)
T ss_pred cCCCCccHHHHHHHHHhhccccc-ccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHH
Confidence 98 68999999988777776655 567899999999999985 4689999999999999976 89999999999999999
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHhhh--cc-CCCCcEEEEEEEcCC--CcEEEcCHHHHHHHH
Q 027320 161 KMKNDPAFTFQETVQTAISTLQSVLQ--ED-FKASEIEVGVVSKEN--PEFRVLSIEEIDEHL 218 (225)
Q Consensus 161 ~~~~~~~~s~eea~~l~~~~l~~~~~--~d-~~~~~vei~iv~~~~--~~~~~~~~~ei~~~l 218 (225)
+| +++||+|||++++++||+.+.+ ++ ++..++||+++++++ +.|+.++++||+.+|
T Consensus 168 ~y--~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~~~~~f~~l~~~ei~~~l 228 (228)
T TIGR03691 168 SY--RDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSRPRRAFRRITGEALERLL 228 (228)
T ss_pred hc--CCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCCCccceEECCHHHHHhhC
Confidence 98 4789999999999999999965 32 666799999999753 459999999998864
No 22
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=1.4e-48 Score=320.23 Aligned_cols=204 Identities=20% Similarity=0.267 Sum_probs=189.4
Q ss_pred CCeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q 027320 15 GVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVL 93 (225)
Q Consensus 15 G~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 93 (225)
|+|+|||+++||||||+|++.+ +.++.+++.+|||+|++|++|+++|..+|++.+.+++|.+++.|+++++++++++.+
T Consensus 2 G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~l 81 (219)
T TIGR03690 2 GTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDGK 81 (219)
T ss_pred CcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 8899999999999999999999 699999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCcccccceeEEEEEeCC-CCcEEEEECCCC-ceecceEEeccCChHHHHHHHHhhccCCCCCCHH
Q 027320 94 AKWIADKSQVYTQHAYMRPLGVVAMVLSIDEE-CGPRLFKCDPAG-HFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQ 171 (225)
Q Consensus 94 a~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~-~gp~Ly~id~~G-~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~e 171 (225)
+++|++++|.++ .+.+|||+|++||||||++ ++|+||++||+| .+..++++|+|+|++.++++||+.| +++||.+
T Consensus 82 a~~ls~~~~~~~-~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~--~~~ms~e 158 (219)
T TIGR03690 82 ANRLAAMVRGNL-PAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLY--SPDLDED 158 (219)
T ss_pred HHHHHHHHHhhh-hhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcC--CCCcCHH
Confidence 999999998877 4568999999999999964 689999999999 5777799999999999999999998 4799999
Q ss_pred HHHHHHHHHHHHhhhccCCCCc--------EEEEEEEcCCCcEEEcCHHHHHHHHHHhhc
Q 027320 172 ETVQTAISTLQSVLQEDFKASE--------IEVGVVSKENPEFRVLSIEEIDEHLTAISE 223 (225)
Q Consensus 172 ea~~l~~~~l~~~~~~d~~~~~--------vei~iv~~~~~~~~~~~~~ei~~~l~~~~~ 223 (225)
||++++++||+.+.++|..+++ ++|+++++++ |+.++++||+.++.++.+
T Consensus 159 eai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g--~~~l~~~ei~~~~~~~~~ 216 (219)
T TIGR03690 159 DALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADG--ARRVPESELEELARAIVE 216 (219)
T ss_pred HHHHHHHHHHHHHHhcccccCCcccccccccEEEEEccCc--eEEcCHHHHHHHHHHHHh
Confidence 9999999999999999975542 3899998664 999999999999998874
No 23
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.7e-48 Score=313.98 Aligned_cols=191 Identities=19% Similarity=0.252 Sum_probs=177.7
Q ss_pred cCCeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHH-HHHHHcCCCCCHH
Q 027320 14 AGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAA-EFRFKYGYEMPVD 91 (225)
Q Consensus 14 ~G~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~ 91 (225)
+|+|+|||+++||||||+|++.+ +.++.+++.+|||+|++|++|+++|+.+|++.+.+++|.++. .+++.++.+++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 48999999999999999999999 899999999999999999999999999999999999999987 5667899999999
Q ss_pred HHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHhhccCCCCCCHH
Q 027320 92 VLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQ 171 (225)
Q Consensus 92 ~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~e 171 (225)
.++++|++.+ |++++++|||+|++|+||||+++||+||++||+|++.+++++|+|+|+++++++||+.|+++++||+|
T Consensus 81 ~la~~i~~~~--y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~e 158 (197)
T cd03760 81 EIHSYLTRVL--YNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEE 158 (197)
T ss_pred HHHHHHHHHH--HHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHH
Confidence 9999999986 88888899999999999999757999999999999999999999999999999999999543489999
Q ss_pred HHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEE
Q 027320 172 ETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRV 208 (225)
Q Consensus 172 ea~~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~~~~~ 208 (225)
||++++++||+.+.+||..++ +++|++|+++| ++.
T Consensus 159 ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g--~~~ 194 (197)
T cd03760 159 EARALIEECMKVLYYRDARSINKYQIAVVTKEG--VEI 194 (197)
T ss_pred HHHHHHHHHHHHHHHhccccCCceEEEEECCCC--EEe
Confidence 999999999999999996554 89999999986 554
No 24
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.1e-48 Score=309.89 Aligned_cols=188 Identities=18% Similarity=0.286 Sum_probs=176.4
Q ss_pred CeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 027320 16 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 94 (225)
Q Consensus 16 ~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 94 (225)
+|+|||+++||||||+|++.+ +.++.+++++|||+|+++++|++||..+|++.+.++++.++..|++.++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 589999999999999999998 7888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHhhccCCCCCCHHHHH
Q 027320 95 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 174 (225)
Q Consensus 95 ~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~eea~ 174 (225)
++|++++|.|+++. |||++++|+||||+++||+||++||+|++.+++++|+|+|+++++++||+.| +|+||.|||+
T Consensus 82 ~~l~~~~~~~~~~~--rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~--~~~ms~eeai 157 (193)
T cd03758 82 NFTRRELAESLRSR--TPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYY--KPDMTVEEAL 157 (193)
T ss_pred HHHHHHHHHHhhcC--CCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhcc--CCCCCHHHHH
Confidence 99999999887543 8999999999999767999999999999999999999999999999999998 4799999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEc
Q 027320 175 QTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVL 209 (225)
Q Consensus 175 ~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~~~~~~ 209 (225)
+++.+|++.+.+||..++ +++|++|+++| ++.+
T Consensus 158 ~l~~~a~~~~~~rd~~~~~~i~i~ii~~~g--~~~~ 191 (193)
T cd03758 158 ELMKKCIKELKKRFIINLPNFTVKVVDKDG--IRDL 191 (193)
T ss_pred HHHHHHHHHHHHhccccCCceEEEEEcCCC--eEeC
Confidence 999999999999997665 89999999886 5553
No 25
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=4.4e-47 Score=315.74 Aligned_cols=199 Identities=17% Similarity=0.215 Sum_probs=185.7
Q ss_pred cCCeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Q 027320 14 AGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDV 92 (225)
Q Consensus 14 ~G~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (225)
.|+|+|||+++||||||+|++.+ +.++.+++.+|||+|++|++|++||+.+|++.+.++++.++..|++++|++|+++.
T Consensus 38 ~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~isv~~ 117 (247)
T PTZ00488 38 HGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELISVAA 117 (247)
T ss_pred CCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 49999999999999999999998 79998999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCcccccc--eeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHhhccCCCCCCH
Q 027320 93 LAKWIADKSQVYTQHAYMRPLGV--VAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTF 170 (225)
Q Consensus 93 la~~ls~~~~~~t~~~~~rP~~v--~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~ 170 (225)
++++|+++++.+ |||++ ++|+||||+ .||+||++||+|++.+++++|+|+|+..++++||+.|+ ++||.
T Consensus 118 la~~ls~~l~~~------R~~~~~v~~iiaG~D~-~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k--~dms~ 188 (247)
T PTZ00488 118 ASKILANIVWNY------KGMGLSMGTMICGWDK-KGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFK--WDLND 188 (247)
T ss_pred HHHHHHHHHHhc------CCCCeeEEEEEEEEeC-CCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCc--CCCCH
Confidence 999999998644 55554 589999996 78999999999999999999999999999999999984 68999
Q ss_pred HHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHHHHHhhc
Q 027320 171 QETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLTAISE 223 (225)
Q Consensus 171 eea~~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~~~~~~~~~ei~~~l~~~~~ 223 (225)
+||++++++||+.+.+||..++ +++|++|+++| ++.++++||+++++++.+
T Consensus 189 eEai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g--~~~l~~~ei~~~l~~~~~ 240 (247)
T PTZ00488 189 EEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDG--WKKISADDCFDLHQKYAA 240 (247)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCc--cEECCHHHHHHHHHHHhh
Confidence 9999999999999999997665 89999999885 999999999999998773
No 26
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.3e-47 Score=305.92 Aligned_cols=188 Identities=20% Similarity=0.266 Sum_probs=172.8
Q ss_pred cCCeEEEEEcCCEEEEEEeccCCCCccc-cCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Q 027320 14 AGVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDV 92 (225)
Q Consensus 14 ~G~t~vgi~~~dgvvlaad~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (225)
.|+|+|||+++||||||+|++.+..++. .++.+|||+|++|++|++||..+|++.+.++++.++..|+++++++|+++.
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 81 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKT 81 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3899999999999999999999866665 557899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecce-EEeccCChHHHHHHHHhhccCCCCCCHH
Q 027320 93 LAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHK-ATSAGLKEQEAINFLEKKMKNDPAFTFQ 171 (225)
Q Consensus 93 la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~-~~aiG~gs~~~~~~Le~~~~~~~~~s~e 171 (225)
++++|++.+ |++ +.+||+|++||||||++++|+||++||+|++..++ ++|+|+|++.++++||+.| +|+|+++
T Consensus 82 la~~l~~~l--y~~--r~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~--~~~~s~~ 155 (195)
T cd03759 82 FSSLISSLL--YEK--RFGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLW--RPDMEPD 155 (195)
T ss_pred HHHHHHHHH--HHh--cCCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhcc--CCCCCHH
Confidence 999999998 554 36899999999999976789999999999998887 9999999999999999998 4789999
Q ss_pred HHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEE
Q 027320 172 ETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFR 207 (225)
Q Consensus 172 ea~~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~~~~ 207 (225)
||++++++||+.+.+||..++ +++|++|+++|...+
T Consensus 156 ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~ 192 (195)
T cd03759 156 ELFETISQALLSAVDRDALSGWGAVVYIITKDKVTTR 192 (195)
T ss_pred HHHHHHHHHHHHHHhhCcccCCceEEEEEcCCcEEEE
Confidence 999999999999999997665 899999999875443
No 27
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-46 Score=301.68 Aligned_cols=185 Identities=17% Similarity=0.220 Sum_probs=173.6
Q ss_pred CeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 027320 16 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 94 (225)
Q Consensus 16 ~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 94 (225)
+|+|||+++||||||+|++.+ +.++.+++.+|||+|++|++|+++|+.+|++.+.+++|.++..|++.+|++++++.++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 589999999999999999999 5787888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHhhccCCCCCCHHHHH
Q 027320 95 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 174 (225)
Q Consensus 95 ~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~eea~ 174 (225)
++|++++|.|+ ..||+|++||||||+ .||+||++||+|++.+++++|+|+|+++++++||+.| +|+|++|||+
T Consensus 81 ~~ls~~l~~~~----~~~~~v~~li~G~D~-~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~--~~~~s~eea~ 153 (188)
T cd03761 81 KLLSNMLYQYK----GMGLSMGTMICGWDK-TGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGY--RYDLSVEEAY 153 (188)
T ss_pred HHHHHHHHhcC----CCCeEEEEEEEEEeC-CCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcC--CCCCCHHHHH
Confidence 99999998774 358999999999996 7999999999999999999999999999999999998 4789999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEc
Q 027320 175 QTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVL 209 (225)
Q Consensus 175 ~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~~~~~~ 209 (225)
+++++||+.+.+||..++ +++|++|+++| ++.+
T Consensus 154 ~l~~~~l~~~~~rd~~sg~~~~v~ii~~~g--~~~~ 187 (188)
T cd03761 154 DLARRAIYHATHRDAYSGGNVNLYHVREDG--WRKI 187 (188)
T ss_pred HHHHHHHHHHHHhcccCCCCeEEEEEcCCc--eEEc
Confidence 999999999999997765 79999999886 5654
No 28
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5e-46 Score=303.86 Aligned_cols=187 Identities=17% Similarity=0.322 Sum_probs=173.0
Q ss_pred cCCeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Q 027320 14 AGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDV 92 (225)
Q Consensus 14 ~G~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (225)
.|+|+|||+++||||||+|++.+ +.++.+++.+|||+|+++++|++||..+|++.+.+.++.++..|++.+|++++++.
T Consensus 7 ~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~~~ 86 (212)
T cd03757 7 NGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMSTEA 86 (212)
T ss_pred CCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCHHH
Confidence 49999999999999999999999 44455788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHhhcc-------CC
Q 027320 93 LAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMK-------ND 165 (225)
Q Consensus 93 la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~~-------~~ 165 (225)
++++|++++ |++ +.|||++++||||||++++|+||++||+|++.+++++|+|+|++++.++||+.|+ ++
T Consensus 87 la~~ls~~l--y~~--R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~ 162 (212)
T cd03757 87 IAQLLSTIL--YSR--RFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNVER 162 (212)
T ss_pred HHHHHHHHH--Hhh--cCCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCcCCC
Confidence 999999998 443 3579999999999997678999999999999999999999999999999999985 24
Q ss_pred CCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCC
Q 027320 166 PAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENP 204 (225)
Q Consensus 166 ~~~s~eea~~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~ 204 (225)
|+||++||++++++||+.+.+||..++ +++|++|+++|.
T Consensus 163 ~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g~ 202 (212)
T cd03757 163 TPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGI 202 (212)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCCE
Confidence 899999999999999999999997665 799999999974
No 29
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=8.8e-46 Score=296.48 Aligned_cols=182 Identities=26% Similarity=0.469 Sum_probs=173.2
Q ss_pred CCeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q 027320 15 GVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVL 93 (225)
Q Consensus 15 G~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 93 (225)
|+|+|||+++||||||+|++.+ ++++.+++.+|||+|+++++|+++|..+|++.+.++++.+++.|++.++++++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 7899999999999999999998 888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHhhccCCCCCCHHHH
Q 027320 94 AKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQET 173 (225)
Q Consensus 94 a~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~eea 173 (225)
+++|++.+|.+ ++|||+|++|+||||+ .||+||.+||+|++.+++++|+|+++++++++||+.| +|+||++||
T Consensus 81 a~~l~~~~~~~----~~rP~~v~~ivaG~d~-~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~--~~~~s~~ea 153 (185)
T TIGR03634 81 ATLLSNILNSN----RFFPFIVQLLVGGVDE-EGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEY--REDMSVEEA 153 (185)
T ss_pred HHHHHHHHHhc----CCCCeEEEEEEEEEeC-CCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcC--CCCCCHHHH
Confidence 99999999754 6899999999999997 6899999999999999999999999999999999999 478999999
Q ss_pred HHHHHHHHHHhhhccCCCC-cEEEEEEEcCC
Q 027320 174 VQTAISTLQSVLQEDFKAS-EIEVGVVSKEN 203 (225)
Q Consensus 174 ~~l~~~~l~~~~~~d~~~~-~vei~iv~~~~ 203 (225)
++++++||+.+.+||..++ +++|++++++|
T Consensus 154 ~~l~~~~l~~~~~r~~~~~~~~~v~ii~~~g 184 (185)
T TIGR03634 154 KKLAVRAIKSAIERDVASGNGIDVAVITKDG 184 (185)
T ss_pred HHHHHHHHHHHHHhcccCCCCEEEEEEcCCC
Confidence 9999999999999987665 79999999886
No 30
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.5e-45 Score=292.15 Aligned_cols=186 Identities=25% Similarity=0.431 Sum_probs=175.2
Q ss_pred CeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 027320 16 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 94 (225)
Q Consensus 16 ~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 94 (225)
+|+|||+++||||||+|++.+ +.++.+++.+||++|+++++++++|..+|++.+.+.++.++..|++.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 589999999999999999999 7888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHhhccCCCCCCHHHHH
Q 027320 95 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 174 (225)
Q Consensus 95 ~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~eea~ 174 (225)
++|++.+|.+ ++|||+|++|+||||+ ++|+||.+||+|++.+++++|+|+|+++++++||+.| +++|+++||+
T Consensus 81 ~~i~~~~~~~----~~~P~~~~~lvaG~d~-~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~--~~~~~~~ea~ 153 (188)
T cd03764 81 TLLSNILNSS----KYFPYIVQLLIGGVDE-EGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEY--KEDMTVEEAK 153 (188)
T ss_pred HHHHHHHHhc----CCCCcEEEEEEEEEeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcC--CCCCCHHHHH
Confidence 9999999754 5799999999999997 7899999999999999999999999999999999998 4789999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcC
Q 027320 175 QTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLS 210 (225)
Q Consensus 175 ~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~~~~~~~ 210 (225)
+++++||+.+.+||..++ +++|++++++| |+.++
T Consensus 154 ~l~~~~l~~~~~rd~~~~~~i~i~iv~~~g--~~~~~ 188 (188)
T cd03764 154 KLAIRAIKSAIERDSASGDGIDVVVITKDG--YKELE 188 (188)
T ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEECCCC--eEeCC
Confidence 999999999999997665 79999999886 78764
No 31
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.5e-45 Score=299.20 Aligned_cols=185 Identities=12% Similarity=0.214 Sum_probs=169.2
Q ss_pred eEEEEEcCCEEEEEEeccCCCCccccCCcceeEEec----CcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCC-CCCHH
Q 027320 17 TSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPIT----KYLGLLATGMTADARTLVQQARYEAAEFRFKYGY-EMPVD 91 (225)
Q Consensus 17 t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-~~~~~ 91 (225)
=+|||+++||||||+|+|.+++++..++.+|||+|+ +|++|+.||+.+|++.+.+++|.+++.|++++|+ +++++
T Consensus 2 ~~vGIk~kdGVVLaadkr~~~~l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v~ 81 (236)
T cd03765 2 YCLGIKLDAGLVFASDSRTNAGVDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTMF 81 (236)
T ss_pred eEEEEEeCCeEEEEEccCccCCCccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCHH
Confidence 489999999999999999987777667899999998 8999999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHH-HHhhhccC-----cccccceeEEEEEeCCCCcEEEEECCCCceecc----eEEeccCChHHHHHHHHhh
Q 027320 92 VLAKWIADKS-QVYTQHAY-----MRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH----KATSAGLKEQEAINFLEKK 161 (225)
Q Consensus 92 ~la~~ls~~~-~~~t~~~~-----~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~----~~~aiG~gs~~~~~~Le~~ 161 (225)
.+|+++++.+ |.++|+.+ .|||+|++|+||||++.||+||++||+|++.++ +++|+|. ++.++++||++
T Consensus 82 ~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Lek~ 160 (236)
T cd03765 82 DAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILDRV 160 (236)
T ss_pred HHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHHHh
Confidence 9999999985 44566664 489999999999996679999999999999998 4589996 69999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCC
Q 027320 162 MKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENP 204 (225)
Q Consensus 162 ~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~ 204 (225)
| +++||+|||++++++||..+++||..++ +|+|++|+++|.
T Consensus 161 y--k~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G~ 202 (236)
T cd03765 161 I--TPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDSL 202 (236)
T ss_pred c--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCCe
Confidence 8 4789999999999999999999997766 799999999973
No 32
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.9e-44 Score=289.70 Aligned_cols=185 Identities=17% Similarity=0.262 Sum_probs=172.0
Q ss_pred CeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 027320 16 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 94 (225)
Q Consensus 16 ~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 94 (225)
+|+|||+|+||||||+|+|.+ +.++.+++.+|||+|+++++|+++|..+|++.+.+.++.+++.|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 589999999999999999999 5677788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHhhccCCCCCCHHHHH
Q 027320 95 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 174 (225)
Q Consensus 95 ~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~eea~ 174 (225)
++|++.++.|. .||+|++|+||||+ +||+||++||+|++.+++++|+|++++.++++||+.| +|+||++||+
T Consensus 81 ~~l~~~l~~~~-----~p~~v~~ivaG~d~-~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~--~~~ls~~ea~ 152 (189)
T cd03763 81 TMLKQHLFRYQ-----GHIGAALVLGGVDY-TGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRY--KPDMTEEEAK 152 (189)
T ss_pred HHHHHHHHHcC-----CccceeEEEEeEcC-CCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhc--CCCCCHHHHH
Confidence 99999987552 39999999999996 6899999999999999999999999999999999998 4799999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcC
Q 027320 175 QTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLS 210 (225)
Q Consensus 175 ~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~~~~~~~ 210 (225)
+++++||+.+.+||+.++ +++|++|+++| ++...
T Consensus 153 ~l~~~~l~~~~~rd~~~~~~~~v~ii~~~g--~~~~~ 187 (189)
T cd03763 153 KLVCEAIEAGIFNDLGSGSNVDLCVITKDG--VEYLR 187 (189)
T ss_pred HHHHHHHHHHHHhcCcCCCceEEEEEcCCc--EEEec
Confidence 999999999999997665 79999999986 55543
No 33
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.4e-44 Score=288.86 Aligned_cols=181 Identities=15% Similarity=0.231 Sum_probs=171.0
Q ss_pred CeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 027320 16 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 94 (225)
Q Consensus 16 ~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 94 (225)
+|+|||+++||||||+|++.+ +.++.+++.+|||+|++|++|+++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 589999999999999999998 6888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHhhccCCCCCCHHHHH
Q 027320 95 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 174 (225)
Q Consensus 95 ~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~eea~ 174 (225)
++|++.++.+ .|||+|++||||||++.||+||++||+|++.+++++++|+++++++++||+.| +|+|+++||+
T Consensus 81 ~~l~~~~~~~-----~~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~--~~~~s~~ea~ 153 (188)
T cd03762 81 SLFKNLCYNY-----KEMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANY--KPGMTLEECI 153 (188)
T ss_pred HHHHHHHHhc-----cccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcC--CCCCCHHHHH
Confidence 9999998654 37999999999999767899999999999999999999999999999999998 4789999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEEEcCC
Q 027320 175 QTAISTLQSVLQEDFKAS-EIEVGVVSKEN 203 (225)
Q Consensus 175 ~l~~~~l~~~~~~d~~~~-~vei~iv~~~~ 203 (225)
+++++||+.+.+||+.++ +++|++|++++
T Consensus 154 ~l~~~al~~~~~rd~~~~~~~~i~~i~~~g 183 (188)
T cd03762 154 KFVKNALSLAMSRDGSSGGVIRLVIITKDG 183 (188)
T ss_pred HHHHHHHHHHHHhccccCCCEEEEEECCCC
Confidence 999999999999997765 79999999886
No 34
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=6.8e-44 Score=286.19 Aligned_cols=186 Identities=33% Similarity=0.565 Sum_probs=173.6
Q ss_pred HhccCCeEEEEEcCCEEEEEEeccCC-CCcc-ccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCC
Q 027320 11 VKAAGVTSIGVRGKDSVCVVTQKKVP-DKLL-DHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEM 88 (225)
Q Consensus 11 v~~~G~t~vgi~~~dgvvlaad~~~~-~~l~-~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 88 (225)
|++ |+|+|||+++||||||+|++.+ +..+ .+++.+|||+|++|+++++||..+|++.+.++++.++..|++.+++++
T Consensus 1 v~~-G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~ 79 (190)
T PF00227_consen 1 VNN-GTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPI 79 (190)
T ss_dssp HHT-SBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGT
T ss_pred CCC-CeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCccc
Confidence 454 9999999999999999999998 5555 444579999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecc-eEEeccCChHHHHHHHHhhccCCCC
Q 027320 89 PVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH-KATSAGLKEQEAINFLEKKMKNDPA 167 (225)
Q Consensus 89 ~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~-~~~aiG~gs~~~~~~Le~~~~~~~~ 167 (225)
+++.+++.+++.++.+++++++|||++++|+||||++++|+||.+||+|++.++ +++|+|+|++.++++|++.| .++
T Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~--~~~ 157 (190)
T PF00227_consen 80 SPEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLY--KPD 157 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHH--TTT
T ss_pred cchhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhc--cCC
Confidence 999999999999999999999999999999999998667999999999999999 69999999999999999999 589
Q ss_pred CCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEE
Q 027320 168 FTFQETVQTAISTLQSVLQEDFKAS-EIEVGVV 199 (225)
Q Consensus 168 ~s~eea~~l~~~~l~~~~~~d~~~~-~vei~iv 199 (225)
|+++||++++++||+.+.++|..++ +++|++|
T Consensus 158 ~~~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 158 LSLEEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp SSHHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 9999999999999999999986554 8999986
No 35
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.1e-43 Score=281.22 Aligned_cols=182 Identities=23% Similarity=0.411 Sum_probs=170.1
Q ss_pred CeEEEEEcCCEEEEEEeccCCCCccc-cCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 027320 16 VTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 94 (225)
Q Consensus 16 ~t~vgi~~~dgvvlaad~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 94 (225)
+|+|||+++||||||+|++.+..+.. +++.+|||+|+++++|++||+.+|++.+.++++.++..|++.++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999944444 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHhhccCCCCCCHHHHH
Q 027320 95 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 174 (225)
Q Consensus 95 ~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~eea~ 174 (225)
+++++.++.+++ |||++++||||+|++++|+||++||+|++.+++++|+|.+++++.++||+.| +|+|+++||+
T Consensus 81 ~~l~~~~~~~~~----~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~--~~~~s~~ea~ 154 (189)
T cd01912 81 NLLSNILYSYRG----FPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGY--KPDMTLEEAV 154 (189)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhcc--CCCCCHHHHH
Confidence 999999976543 8999999999999767999999999999999999999999999999999999 4789999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEEEcCC
Q 027320 175 QTAISTLQSVLQEDFKAS-EIEVGVVSKEN 203 (225)
Q Consensus 175 ~l~~~~l~~~~~~d~~~~-~vei~iv~~~~ 203 (225)
+++++||+.+.++|..++ +++|++++++|
T Consensus 155 ~~~~~~l~~~~~~d~~~~~~~~v~vi~~~g 184 (189)
T cd01912 155 ELVKKAIDSAIERDLSSGGGVDVAVITKDG 184 (189)
T ss_pred HHHHHHHHHHHHhcCccCCcEEEEEECCCC
Confidence 999999999999987655 79999999986
No 36
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=4.4e-42 Score=273.89 Aligned_cols=180 Identities=40% Similarity=0.682 Sum_probs=168.4
Q ss_pred CeEEEEEcCCEEEEEEeccCCCC-ccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 027320 16 VTSIGVRGKDSVCVVTQKKVPDK-LLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 94 (225)
Q Consensus 16 ~t~vgi~~~dgvvlaad~~~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 94 (225)
+|+|||+++||||||+|++.+.. ...+++.+|||+|+++++|+++|..+|++.+.+.++.++..|++.++++++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999844 44478899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHhhccCCCCCCHHHHH
Q 027320 95 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 174 (225)
Q Consensus 95 ~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~eea~ 174 (225)
++|++.+|.++++ .|||++++|+||||++++|+||.+||+|++.+++++|+|++++.++++||+.|+ ++||.+||+
T Consensus 81 ~~l~~~~~~~~~~--~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~--~~~s~~ea~ 156 (182)
T cd01906 81 KLLANLLYEYTQS--LRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYK--PDMTLEEAI 156 (182)
T ss_pred HHHHHHHHHhCCC--ccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHcc--CCCCHHHHH
Confidence 9999999998875 899999999999997679999999999999999999999999999999999984 789999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEE
Q 027320 175 QTAISTLQSVLQEDFKAS-EIEVGVV 199 (225)
Q Consensus 175 ~l~~~~l~~~~~~d~~~~-~vei~iv 199 (225)
+++++||+.+.++|..++ +++|+++
T Consensus 157 ~l~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 157 ELALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred HHHHHHHHHHHcccCCCCCCEEEEEC
Confidence 999999999999987554 7999875
No 37
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-38 Score=243.25 Aligned_cols=188 Identities=16% Similarity=0.271 Sum_probs=176.3
Q ss_pred eEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 027320 17 TSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 95 (225)
Q Consensus 17 t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~ 95 (225)
+++||++.|+|++|+|+... |-++..++.+|++.+++++.|+++|..+|+.++.+++++.++.|++++|.++||...|+
T Consensus 3 ~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aah 82 (200)
T KOG0177|consen 3 TLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAAH 82 (200)
T ss_pred eEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHHH
Confidence 78999999999999999988 77788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHhhccCCCCCCHHHHHH
Q 027320 96 WIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQ 175 (225)
Q Consensus 96 ~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~eea~~ 175 (225)
++.+.+.++. +..+||.|++|+||+|++.||.||++|..|+..+.++++.|.++.++.++|++.| +|+||.+||++
T Consensus 83 FtR~~La~~L--Rsr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y--~pdmt~eea~~ 158 (200)
T KOG0177|consen 83 FTRRELAESL--RSRTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYY--KPDMTIEEALD 158 (200)
T ss_pred HHHHHHHHHH--hcCCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhh--CCCCCHHHHHH
Confidence 9999999885 3468999999999999988999999999999999999999999999999999998 58999999999
Q ss_pred HHHHHHHHhhhcc-CCCCcEEEEEEEcCCCcEEEcC
Q 027320 176 TAISTLQSVLQED-FKASEIEVGVVSKENPEFRVLS 210 (225)
Q Consensus 176 l~~~~l~~~~~~d-~~~~~vei~iv~~~~~~~~~~~ 210 (225)
+..+|+.+..+|- ++..+|.+.||+|+| ++.++
T Consensus 159 lmkKCv~El~kRlvin~~~f~v~IVdkdG--ir~~~ 192 (200)
T KOG0177|consen 159 LMKKCVLELKKRLVINLPGFIVKIVDKDG--IRKLD 192 (200)
T ss_pred HHHHHHHHHHHhcccCCCCcEEEEEcCCC--ceecc
Confidence 9999999999884 566799999999997 56544
No 38
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-36 Score=234.19 Aligned_cols=190 Identities=17% Similarity=0.333 Sum_probs=176.3
Q ss_pred cCCeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Q 027320 14 AGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDV 92 (225)
Q Consensus 14 ~G~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (225)
+|+|+|||.+.|+.|+|+|+|.+ +-.+.++..+|||+++|+++++.||+++|+..|...++...+.|++.++..|++..
T Consensus 28 NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms~~s 107 (235)
T KOG0179|consen 28 NGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKMSIHS 107 (235)
T ss_pred CCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccccHHH
Confidence 48899999999999999999999 66667789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHhhccC--------
Q 027320 93 LAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKN-------- 164 (225)
Q Consensus 93 la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~~~-------- 164 (225)
+|+.|+..+ | .+++.||.+..+|+|+|+++++.+|+.||.|++.+..+.|-|+++..++++|+.+...
T Consensus 108 ~A~lls~~L--Y--~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~~~e~~ 183 (235)
T KOG0179|consen 108 AAQLLSTIL--Y--SKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQNLENA 183 (235)
T ss_pred HHHHHHHHH--h--hcccccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCcCcccccC
Confidence 999999999 5 4678999999999999998999999999999999999999999999999999987531
Q ss_pred -CCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEE
Q 027320 165 -DPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFR 207 (225)
Q Consensus 165 -~~~~s~eea~~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~~~~ 207 (225)
++.+|+|+|++++.+++..+.+||+..+ +++|+|++++|...+
T Consensus 184 ~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV~~e 228 (235)
T KOG0179|consen 184 ERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGVEVE 228 (235)
T ss_pred cccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCEEEE
Confidence 2358999999999999999999999988 699999999985433
No 39
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-36 Score=239.27 Aligned_cols=197 Identities=18% Similarity=0.213 Sum_probs=185.7
Q ss_pred CCeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q 027320 15 GVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVL 93 (225)
Q Consensus 15 G~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 93 (225)
|||++|++++.|||+|+|+|.+ |.++....++||.+||++++-.++|-.+|++++-+.+.++|..|++++++-|++...
T Consensus 71 GTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSVsaA 150 (285)
T KOG0175|consen 71 GTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISVSAA 150 (285)
T ss_pred CceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceehHHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHhhccCCCCCCHHHH
Q 027320 94 AKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQET 173 (225)
Q Consensus 94 a~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~eea 173 (225)
++.||+++.+| +++ -+.+..+|||||+ .||.||.+|..|+..+-+-.++|+|+.+++++|+..| +++|+.|||
T Consensus 151 SKllsN~~y~Y---kGm-GLsmGtMi~G~Dk-~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgY--r~dls~eEA 223 (285)
T KOG0175|consen 151 SKLLSNMVYQY---KGM-GLSMGTMIAGWDK-KGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGY--RYDLSDEEA 223 (285)
T ss_pred HHHHHHHHhhc---cCc-chhheeeEeeccC-CCCceEEEcCCCCEecCceEeecCCCceeEEeeccCC--CCCCCHHHH
Confidence 99999999554 554 5789999999998 8999999999999999999999999999999999997 579999999
Q ss_pred HHHHHHHHHHhhhccCCCCc-EEEEEEEcCCCcEEEcCHHHHHHHHHH
Q 027320 174 VQTAISTLQSVLQEDFKASE-IEVGVVSKENPEFRVLSIEEIDEHLTA 220 (225)
Q Consensus 174 ~~l~~~~l~~~~~~d~~~~~-vei~iv~~~~~~~~~~~~~ei~~~l~~ 220 (225)
.+|+++|+..+..||..+++ +.+.-|+++| +..+++.++.++...
T Consensus 224 ~~L~rrAI~hAThRDaySGG~vnlyHv~edG--W~~v~~~Dv~~L~~~ 269 (285)
T KOG0175|consen 224 YDLARRAIYHATHRDAYSGGVVNLYHVKEDG--WVKVSNTDVSELHYH 269 (285)
T ss_pred HHHHHHHHHHHHhcccccCceEEEEEECCcc--ceecCCccHHHHHHH
Confidence 99999999999999999885 9999999996 899999999998443
No 40
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-35 Score=234.08 Aligned_cols=190 Identities=19% Similarity=0.298 Sum_probs=173.7
Q ss_pred HHHHhccCCeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCC
Q 027320 8 FKAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGY 86 (225)
Q Consensus 8 ~kav~~~G~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 86 (225)
.++-+ +|||++|+.++||||+++|+|.+ +..+..++.+||+.|.++|+||.+|..+|...+.+.+..+...|++..++
T Consensus 31 p~~tk-TGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R 109 (271)
T KOG0173|consen 31 PKATK-TGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGR 109 (271)
T ss_pred Ccccc-cCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCC
Confidence 34555 69999999999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHhhccCCC
Q 027320 87 EMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDP 166 (225)
Q Consensus 87 ~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~ 166 (225)
++++-..-+.|.+.+..| . ...++.++++|+|+ .|||||++-|.|+....+|+++|+|+..++++||.+| +|
T Consensus 110 ~~rVv~A~~mlkQ~LFrY---q--G~IgA~LiiGGvD~-TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~--k~ 181 (271)
T KOG0173|consen 110 KPRVVTALRMLKQHLFRY---Q--GHIGAALILGGVDP-TGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRW--KP 181 (271)
T ss_pred CCceeeHHHHHHHHHHHh---c--CcccceeEEccccC-CCCceEEEcCCCCcCccceeeeccchHHHHHHHHHhc--Cc
Confidence 998877777777777554 2 24799999999998 7999999999999999999999999999999999999 58
Q ss_pred CCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcE
Q 027320 167 AFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEF 206 (225)
Q Consensus 167 ~~s~eea~~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~~~ 206 (225)
+|++|||.+|+.+|+...+..|+.++ |++++||++.+..|
T Consensus 182 dlt~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~~~~ 222 (271)
T KOG0173|consen 182 DLTKEEAIKLVCEAIAAGIFNDLGSGSNVDLCVITKKGVEY 222 (271)
T ss_pred ccCHHHHHHHHHHHHHhhhccccCCCCceeEEEEeCCCccc
Confidence 99999999999999999999999997 89999999765434
No 41
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-35 Score=232.77 Aligned_cols=198 Identities=17% Similarity=0.227 Sum_probs=180.7
Q ss_pred cCCeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHH-HHcCCCCCHH
Q 027320 14 AGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFR-FKYGYEMPVD 91 (225)
Q Consensus 14 ~G~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~-~~~~~~~~~~ 91 (225)
+|||+||++++||||||+|+..+ |++...++++|+++|+||+++|+||..+|+|.+.+.+.+...... +..|+.+.|+
T Consensus 40 TGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~~~Dg~~l~Pk 119 (256)
T KOG0185|consen 40 TGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNRLDDGQSLGPK 119 (256)
T ss_pred ccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhcccccccccccChH
Confidence 59999999999999999999999 999999999999999999999999999999999999977665533 5567899999
Q ss_pred HHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHhhcc-CCCCCCH
Q 027320 92 VLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMK-NDPAFTF 170 (225)
Q Consensus 92 ~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~~-~~~~~s~ 170 (225)
.++.+|++.+ |.+++.+.|++..++|||+|.++.|.|-.+|-.|..++.+..|+|.|..++.++|++.|. +.++++.
T Consensus 120 ~ih~yltrvl--Y~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P~lR~~~~~k~~~~s~ 197 (256)
T KOG0185|consen 120 AIHSYLTRVL--YARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESPVVATGFGAHLALPLLRDEWEKKGEDLSR 197 (256)
T ss_pred HHHHHHHHHH--HHhhhccCchhhheeEeeecCCCCeeEEEEeeccccccCchhhhhhHHHhhhHHHHHhhhccchhhHH
Confidence 9999999999 778899999999999999998789999999999999999999999999999999999996 4678999
Q ss_pred HHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcCHHHHH
Q 027320 171 QETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEID 215 (225)
Q Consensus 171 eea~~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~~~~~~~~~ei~ 215 (225)
+||..++.+||+...+||+.+. .|+|++|+++| +..-.|.+|+
T Consensus 198 eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eG--v~i~~p~qv~ 241 (256)
T KOG0185|consen 198 EEAEALIEKCMRVLYYRDARASNEFQVATVDEEG--VTISKPYQVK 241 (256)
T ss_pred HHHHHHHHHHHHHHhccccccccceEEEEEcccc--eEecCceeee
Confidence 9999999999999999999876 69999999986 4544444443
No 42
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-34 Score=224.21 Aligned_cols=199 Identities=17% Similarity=0.231 Sum_probs=183.0
Q ss_pred cCCeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Q 027320 14 AGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDV 92 (225)
Q Consensus 14 ~G~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (225)
+|||++|+.+++||||++|+|.+ +.++.++..+|+.+|.|+|+||.||..+|.|.+.+.++.....|..+++.++++..
T Consensus 18 tGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~v~~ 97 (224)
T KOG0174|consen 18 TGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPLVHT 97 (224)
T ss_pred cCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCchHHH
Confidence 69999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHhhccCCCCCCHHH
Q 027320 93 LAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQE 172 (225)
Q Consensus 93 la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~ee 172 (225)
.|+..+++..+| ..-+.+.+|+||||+..|.++|.+---|+..+-+++.-|+||.+++++++.+| +|+|++||
T Consensus 98 aA~l~r~~~Y~~-----re~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~--r~nMt~EE 170 (224)
T KOG0174|consen 98 AASLFREICYNY-----REMLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANW--RPNMTLEE 170 (224)
T ss_pred HHHHHHHHHHhC-----HHhhhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhc--CCCCCHHH
Confidence 999999888443 22478999999999988999999988888888888888999999999999999 58999999
Q ss_pred HHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHHHH
Q 027320 173 TVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLT 219 (225)
Q Consensus 173 a~~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~~~~~~~~~ei~~~l~ 219 (225)
+++++.+|+..+++||-+++ -|.+.+|+++|..++.+.++++..+..
T Consensus 171 ~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~~~~~d~~~~~~v 218 (224)
T KOG0174|consen 171 CVRFVKNAVSLAIERDGSSGGVIRLVIINKAGVERRFFPGDKLGQFAV 218 (224)
T ss_pred HHHHHHHHHHHHHhccCCCCCEEEEEEEccCCceEEEecCCccccccc
Confidence 99999999999999998887 499999999998888888888766543
No 43
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=100.00 E-value=4.8e-32 Score=213.39 Aligned_cols=166 Identities=16% Similarity=0.157 Sum_probs=142.2
Q ss_pred CCeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEe-cCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Q 027320 15 GVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPI-TKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDV 92 (225)
Q Consensus 15 G~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (225)
|+|+|||+++||||||+|+|.+ |.++.+++.+||++| +|+++|++||..+|++.+.+.++.+++.|+. +. ++.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~~---~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG--NL---LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC--cc---HHH
Confidence 6899999999999999999999 999999999999999 9999999999999999999999999999872 22 456
Q ss_pred HHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecc--eEEeccCChHHHHHHHHhhccCCCCCCH
Q 027320 93 LAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH--KATSAGLKEQEAINFLEKKMKNDPAFTF 170 (225)
Q Consensus 93 la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~--~~~aiG~gs~~~~~~Le~~~~~~~~~s~ 170 (225)
.++....+. .+...+|+.+++|+ +|. |+||.+||.|+..+. +++|+|+|+.+++++||+.|+ .|+|
T Consensus 76 ~a~l~~~l~----~~~~~~~l~~~~lv--~d~---~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~-~~~m-- 143 (172)
T PRK05456 76 AVELAKDWR----TDRYLRRLEAMLIV--ADK---EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLE-NTDL-- 143 (172)
T ss_pred HHHHHHHHH----hccCCCccEEEEEE--EcC---CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhh-cCCC--
Confidence 664443332 12334688899999 453 799999999999776 799999999999999999984 2789
Q ss_pred HHHHHHHHHHHHHhhhccCCCC-cEEEEE
Q 027320 171 QETVQTAISTLQSVLQEDFKAS-EIEVGV 198 (225)
Q Consensus 171 eea~~l~~~~l~~~~~~d~~~~-~vei~i 198 (225)
||++++++|++.+.+||..++ +|++-.
T Consensus 144 -eA~~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 144 -SAEEIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred -CHHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 999999999999999998876 677653
No 44
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.98 E-value=5.3e-31 Score=206.18 Aligned_cols=163 Identities=13% Similarity=0.053 Sum_probs=137.3
Q ss_pred CeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecC-cEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q 027320 16 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITK-YLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVL 93 (225)
Q Consensus 16 ~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 93 (225)
+|+|||+++||||||+|+|.+ |.++.+++.+||++|+| |++|++||..+|++.|.++++.+++.|+++.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 589999999999999999999 99999999999999999 999999999999999999999999999988774 33
Q ss_pred HHHHHHHHHHhhhccCccccc-ceeEEEEEeCCCCcEEEEECCCCceecce--EEeccCChHHHHHHHHhhccCCC-CCC
Q 027320 94 AKWIADKSQVYTQHAYMRPLG-VVAMVLSIDEECGPRLFKCDPAGHFFGHK--ATSAGLKEQEAINFLEKKMKNDP-AFT 169 (225)
Q Consensus 94 a~~ls~~~~~~t~~~~~rP~~-v~~ll~G~d~~~gp~Ly~id~~G~~~~~~--~~aiG~gs~~~~~~Le~~~~~~~-~~s 169 (225)
++.+.... .| ..+|+. +.++++++ ++||.+||.|...+.+ ++|+|+||.+++++||.+|+ + +|+
T Consensus 76 a~l~~~l~-~~----~~~~~l~a~~iv~~~-----~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk--~~~ms 143 (171)
T cd01913 76 VELAKDWR-TD----RYLRRLEAMLIVADK-----EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLD--HTDLS 143 (171)
T ss_pred HHHHHHHH-hc----cCcCceEEEEEEeCC-----CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhc--cCCCC
Confidence 44433221 11 345665 55555433 4899999999999984 99999999999999999984 6 499
Q ss_pred HHHHHHHHHHHHHHhhhccCCCC-cEEEEE
Q 027320 170 FQETVQTAISTLQSVLQEDFKAS-EIEVGV 198 (225)
Q Consensus 170 ~eea~~l~~~~l~~~~~~d~~~~-~vei~i 198 (225)
+.++|++|++.+.+||..++ +|++-.
T Consensus 144 ---~~~la~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 144 ---AEEIARKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred ---HHHHHHHHHHHHHhhCcccCCCEEEEe
Confidence 55999999999999999887 677643
No 45
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=4.8e-31 Score=200.43 Aligned_cols=185 Identities=17% Similarity=0.277 Sum_probs=173.6
Q ss_pred cCCeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Q 027320 14 AGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDV 92 (225)
Q Consensus 14 ~G~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (225)
+|+++||++++|||.||+|.|.. ......++.+|||++.|+++++.+|+..|++.+.++++..-..|+++.+++|-|+.
T Consensus 7 nGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~~ 86 (204)
T KOG0180|consen 7 NGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPET 86 (204)
T ss_pred cCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcHH
Confidence 38899999999999999999998 56667789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecc-eEEeccCChHHHHHHHHhhccCCCCCCHH
Q 027320 93 LAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH-KATSAGLKEQEAINFLEKKMKNDPAFTFQ 171 (225)
Q Consensus 93 la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~-~~~aiG~gs~~~~~~Le~~~~~~~~~s~e 171 (225)
+++.+|..+ |. .++.||.+..++||+|++++|+|...|..|..... .+++.|.+++..++.+|..| .|+|..|
T Consensus 87 ~s~mvS~~l--Ye--kRfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly--~pnmepd 160 (204)
T KOG0180|consen 87 FSSMVSSLL--YE--KRFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALY--EPNMEPD 160 (204)
T ss_pred HHHHHHHHH--HH--hhcCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhc--CCCCCHH
Confidence 999999999 43 45789999999999999899999999999999875 79999999999999999999 5899999
Q ss_pred HHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCC
Q 027320 172 ETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENP 204 (225)
Q Consensus 172 ea~~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~ 204 (225)
++.+.+.++|-.+.+||.-++ +..+.+|+||..
T Consensus 161 ~LFetisQa~Lna~DRDalSGwGa~vyiI~kdkv 194 (204)
T KOG0180|consen 161 ELFETISQALLNAVDRDALSGWGAVVYIITKDKV 194 (204)
T ss_pred HHHHHHHHHHHhHhhhhhhccCCeEEEEEccchh
Confidence 999999999999999999888 899999999964
No 46
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.97 E-value=4.1e-30 Score=199.53 Aligned_cols=161 Identities=34% Similarity=0.493 Sum_probs=151.7
Q ss_pred CeEEEEEcCCEEEEEEeccCCCCccc-cCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 027320 16 VTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 94 (225)
Q Consensus 16 ~t~vgi~~~dgvvlaad~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 94 (225)
+|+||++++||||+|+|++.+..+.. .....|++.++++++++++|..+|++.+.++++.++..|++.++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 48999999999999999999844443 67899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecc-eEEeccCChHHHHHHHHhhccCCCCCCHHHH
Q 027320 95 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH-KATSAGLKEQEAINFLEKKMKNDPAFTFQET 173 (225)
Q Consensus 95 ~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~-~~~aiG~gs~~~~~~Le~~~~~~~~~s~eea 173 (225)
+.+++.++.+++ .||+++++++||+|+ ++|+||.+||+|++.++ .++++|.++..+.++|++.| +++|+.+|+
T Consensus 81 ~~~~~~~~~~~~---~~p~~~~~iiag~~~-~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~--~~~~~~~~~ 154 (164)
T cd01901 81 KELAKLLQVYTQ---GRPFGVNLIVAGVDE-GGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLY--KPDMTLEEA 154 (164)
T ss_pred HHHHHHHHHhcC---CCCcceEEEEEEEcC-CCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHh--cCCCCHHHH
Confidence 999999998876 799999999999997 79999999999999999 99999999999999999998 467999999
Q ss_pred HHHHHHHHH
Q 027320 174 VQTAISTLQ 182 (225)
Q Consensus 174 ~~l~~~~l~ 182 (225)
++++.+||+
T Consensus 155 ~~~~~~~l~ 163 (164)
T cd01901 155 VELALKALK 163 (164)
T ss_pred HHHHHHHHh
Confidence 999999985
No 47
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.97 E-value=1.6e-30 Score=203.47 Aligned_cols=164 Identities=14% Similarity=0.110 Sum_probs=136.8
Q ss_pred CeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEe-cCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q 027320 16 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPI-TKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVL 93 (225)
Q Consensus 16 ~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 93 (225)
+|+|||+++||||||+|+|.+ |.++.+++.+||++| +||++|+++|..+|++.+.++++.+++.|++.. .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 589999999999999999999 999999999999999 599999999999999999999999999987643 3555
Q ss_pred HHHHHHHHHHhhhccCccc-ccceeEEEEEeCCCCcEEEEECCCCceecc--eEEeccCChHHHHHHHHhhccCCCCCCH
Q 027320 94 AKWIADKSQVYTQHAYMRP-LGVVAMVLSIDEECGPRLFKCDPAGHFFGH--KATSAGLKEQEAINFLEKKMKNDPAFTF 170 (225)
Q Consensus 94 a~~ls~~~~~~t~~~~~rP-~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~--~~~aiG~gs~~~~~~Le~~~~~~~~~s~ 170 (225)
++.+.+.. .+ ..+| +.+.+++++| |+||.+||.|...+. +++++|+||.+++++||.+|++ ++|+
T Consensus 76 a~l~~~~~----~~-~~~~~l~a~~iv~~~-----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~-~~~s- 143 (171)
T TIGR03692 76 VELAKDWR----TD-RYLRRLEAMLIVADK-----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRN-TDLS- 143 (171)
T ss_pred HHHHHHHh----hc-ccccccEEEEEEEcC-----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhc-CCCC-
Confidence 66655421 11 2234 3366666533 489999999999996 5999999999999999999953 5677
Q ss_pred HHHHHHHHHHHHHhhhccCCCC-cEEEEE
Q 027320 171 QETVQTAISTLQSVLQEDFKAS-EIEVGV 198 (225)
Q Consensus 171 eea~~l~~~~l~~~~~~d~~~~-~vei~i 198 (225)
|+++|.++++.+.+||..++ +|+|-.
T Consensus 144 --a~~la~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 144 --AEEIAREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred --HHHHHHHHHHHHHhhCccCCCCEEEEe
Confidence 99999999999999999887 677653
No 48
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=7.1e-12 Score=95.21 Aligned_cols=167 Identities=17% Similarity=0.155 Sum_probs=122.4
Q ss_pred CCeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecC-cEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Q 027320 15 GVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITK-YLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDV 92 (225)
Q Consensus 15 G~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (225)
+||+++++-++-|+||.|.+.+ |..+...+.+|+.+|.+ +++.+++|.++|+..+.+.+...+++|. |.- -.
T Consensus 4 ~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~---g~L---~r 77 (178)
T COG5405 4 MTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQ---GDL---FR 77 (178)
T ss_pred eEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHcc---CcH---HH
Confidence 6899999999999999999999 88888888777777754 8999999999999999999999888764 221 11
Q ss_pred HHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecc--eEEeccCChHHHHHHHHhhccCCCCCCH
Q 027320 93 LAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH--KATSAGLKEQEAINFLEKKMKNDPAFTF 170 (225)
Q Consensus 93 la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~--~~~aiG~gs~~~~~~Le~~~~~~~~~s~ 170 (225)
-+..+++-. ++. +.+|-+-+-++++ |+ -.+|-+...|...+. ..+|||+|..++.+.-...++ .+++|
T Consensus 78 aavelaKdw--r~D-k~lr~LEAmllVa--d~---~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~-~~~ls- 147 (178)
T COG5405 78 AAVELAKDW--RTD-KYLRKLEAMLLVA--DK---THILIITGNGDVIEPEDDIIAIGSGGNYALSAARALME-NTELS- 147 (178)
T ss_pred HHHHHHHhh--hhh-hHHHHHhhheeEe--CC---CcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHh-ccCCC-
Confidence 223333333 332 2345566666664 44 457888888888864 489999999999999998874 45666
Q ss_pred HHHHHHHHHHHHHhhhccCCCC-cEEEEEE
Q 027320 171 QETVQTAISTLQSVLQEDFKAS-EIEVGVV 199 (225)
Q Consensus 171 eea~~l~~~~l~~~~~~d~~~~-~vei~iv 199 (225)
|.+++.++|..+-+=+..+. ++.|-.+
T Consensus 148 --A~eIa~~sl~iA~eiciyTN~ni~ve~l 175 (178)
T COG5405 148 --AREIAEKSLKIAGDICIYTNHNIVVEEL 175 (178)
T ss_pred --HHHHHHHHHhhhheEEEecCCcEEEEEe
Confidence 55677778877664444443 5655544
No 49
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.2e-09 Score=86.02 Aligned_cols=185 Identities=11% Similarity=0.092 Sum_probs=136.1
Q ss_pred CeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEe---cC-cEEEEEecchHHHHHHHHHHHHHHHHHHHHc-CCCCCH
Q 027320 16 VTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPI---TK-YLGLLATGMTADARTLVQQARYEAAEFRFKY-GYEMPV 90 (225)
Q Consensus 16 ~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i---~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~-~~~~~~ 90 (225)
+=|||++...|.|+++|+|..-.+-.-...+|+|.. .+ -++++.+|..+=.|.+.+.+.+..+.-+... -.-+++
T Consensus 2 TYCv~l~l~~GlVf~sDsRTNAGvD~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~sm 81 (255)
T COG3484 2 TYCVGLILDFGLVFGSDSRTNAGVDYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPSM 81 (255)
T ss_pred ceEEEEEeccceEEecccccccCchHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcchhH
Confidence 459999999999999999987222222355666544 23 3566779999999999999877654211111 112344
Q ss_pred HHHHHHHHHHHHHhhhccC------cccccceeEEEEEeCCCCcEEEEECCCCceec----ceEEeccCChHHHHHHHHh
Q 027320 91 DVLAKWIADKSQVYTQHAY------MRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG----HKATSAGLKEQEAINFLEK 160 (225)
Q Consensus 91 ~~la~~ls~~~~~~t~~~~------~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~----~~~~aiG~gs~~~~~~Le~ 160 (225)
-..+..+.....+-..+.+ .--|.|++|+||.-....|.||.+-|.|++.+ .++.-||... +.+++|++
T Consensus 82 ~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGEtK-YGKPildR 160 (255)
T COG3484 82 YEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGETK-YGKPILDR 160 (255)
T ss_pred HHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEccccc-cCchhhhh
Confidence 4555666666654432211 12488999999997756799999999999985 3688899765 67899999
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCC
Q 027320 161 KMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKEN 203 (225)
Q Consensus 161 ~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~-~vei~iv~~~~ 203 (225)
.+. -++++||+.+.|+-++...++.+++.+ .+++.++.+|.
T Consensus 161 ~i~--~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds 202 (255)
T COG3484 161 TIT--YDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADS 202 (255)
T ss_pred hhh--ccCCHHHHhhheEEecchhhhccccccCCceeEEEeccc
Confidence 874 579999999999999999998888888 79999999884
No 50
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=97.06 E-value=0.00023 Score=36.73 Aligned_cols=10 Identities=50% Similarity=0.876 Sum_probs=9.2
Q ss_pred CchhhHHHHH
Q 027320 1 MILIEYAFKA 10 (225)
Q Consensus 1 l~QvEya~ka 10 (225)
|+|||||.||
T Consensus 14 l~QVEYA~~A 23 (23)
T PF10584_consen 14 LFQVEYAMKA 23 (23)
T ss_dssp BHHHHHHHHH
T ss_pred EEeeEeeecC
Confidence 6899999997
No 51
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=96.53 E-value=0.15 Score=40.55 Aligned_cols=150 Identities=16% Similarity=0.219 Sum_probs=90.1
Q ss_pred CeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCC-HHHHH
Q 027320 16 VTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMP-VDVLA 94 (225)
Q Consensus 16 ~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~-~~~la 94 (225)
+.+||..+++|.|||.|+|. ++|-|.-.....|-+.+ |+-.|. =+.|.
T Consensus 2 SLII~y~GknGaViaGDkR~---------------------I~F~G~~~~re~LEeeL----------YsG~IktdeEL~ 50 (194)
T PF09894_consen 2 SLIIAYYGKNGAVIAGDKRN---------------------IAFRGDEEKREKLEEEL----------YSGKIKTDEELL 50 (194)
T ss_pred eEEEEEecCCCcEEecccee---------------------eeecCCHHHHHHHHHHH----------hCCccCCHHHHH
Confidence 46899999999999999874 46777776666555443 344443 33444
Q ss_pred HHHHHHH---HHhhhccCcccccceeEEEEE------eCCCCcEEEEE-------CCCCceecceEEeccCCh-------
Q 027320 95 KWIADKS---QVYTQHAYMRPLGVVAMVLSI------DEECGPRLFKC-------DPAGHFFGHKATSAGLKE------- 151 (225)
Q Consensus 95 ~~ls~~~---~~~t~~~~~rP~~v~~ll~G~------d~~~gp~Ly~i-------d~~G~~~~~~~~aiG~gs------- 151 (225)
+....+= +.--.....+-.+- +|+|-+ |. ..-++|.+ |-.|.-. .-...|.++
T Consensus 51 kkA~Elgv~i~I~D~r~KV~~~~~-vlvGEV~s~~g~~s-kRRRiY~t~g~~~Ivei~~~~i--~~~~~g~~sgiIVfGN 126 (194)
T PF09894_consen 51 KKAEELGVKIKITDDREKVRKIGD-VLVGEVTSISGKDS-KRRRIYATKGKYAIVEIENDEI--TNKSRGEGSGIIVFGN 126 (194)
T ss_pred HHHHHcCCEEEEecCchheEEeCC-EEEEEEEEEcCccc-eeeEEEecCCCEEEEEecCCeE--EEEecCCceeEEEECC
Confidence 4322221 00000111122222 333322 32 34566653 2233322 233455555
Q ss_pred ----HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCC-CCcEEEEEEEcC
Q 027320 152 ----QEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFK-ASEIEVGVVSKE 202 (225)
Q Consensus 152 ----~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~-~~~vei~iv~~~ 202 (225)
+.+...|.+.|+ |.|+++++..+...+|..+.....+ +..+++...++.
T Consensus 127 k~~K~ia~~~lkk~~~--~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 127 KFTKEIANKELKKYWK--PKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 778899999995 8899999999999999998765444 457888888765
No 52
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=92.64 E-value=5.2 Score=33.22 Aligned_cols=168 Identities=17% Similarity=0.167 Sum_probs=98.0
Q ss_pred CeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 027320 16 VTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 95 (225)
Q Consensus 16 ~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~ 95 (225)
|-+|+..++||.|+|.|+|. +.+-|.-.|.+.+-+.+ =.|.--+-+.|++
T Consensus 2 tLviay~gknGaviaGDrR~---------------------i~frgdee~re~lEekL---------YsGeIkteEEL~r 51 (293)
T COG4079 2 TLVIAYIGKNGAVIAGDRRE---------------------ITFRGDEEDREKLEEKL---------YSGEIKTEEELAR 51 (293)
T ss_pred eEEEEEecCCCcEEeccceE---------------------EEEecChhHHHHHHHHh---------hcCccccHHHHHH
Confidence 46899999999999999763 45677777776665544 1344445566666
Q ss_pred HHHHHHHHhhh---ccCcccccceeEEEEEeCC-----CCcEEEEE-------CCCCceecceEEeccCC----------
Q 027320 96 WIADKSQVYTQ---HAYMRPLGVVAMVLSIDEE-----CGPRLFKC-------DPAGHFFGHKATSAGLK---------- 150 (225)
Q Consensus 96 ~ls~~~~~~t~---~~~~rP~~v~~ll~G~d~~-----~gp~Ly~i-------d~~G~~~~~~~~aiG~g---------- 150 (225)
+....--.++- +...|-..-+++++-+..- ..-++|.+ +-.|+- .....+|.|
T Consensus 52 ~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT~Ga~aIvel~gs~--vts~~~g~g~aiIv~Gnk~ 129 (293)
T COG4079 52 KAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYATAGAYAIVELRGSE--VTSTSQGKGSAIIVFGNKF 129 (293)
T ss_pred HHHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeecCCceEEEEecCCe--eEeeecCCCceEEEECcHH
Confidence 65544211111 1122333334444444321 12345543 222221 122233332
Q ss_pred -hHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccC-CCCcEEEEEEEcCCCcEEEcCHHHHHHH
Q 027320 151 -EQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDF-KASEIEVGVVSKENPEFRVLSIEEIDEH 217 (225)
Q Consensus 151 -s~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~-~~~~vei~iv~~~~~~~~~~~~~ei~~~ 217 (225)
.+.++.+|.++| .+.++++++.+....+|..+...-. .+..+++..+.+.-..+.++-..+|+.+
T Consensus 130 ~Ke~aneflk~~l--~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~~d~~~rl~kkDie~L 196 (293)
T COG4079 130 TKEVANEFLKDNL--TKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSNVDPVLRLVKKDIETL 196 (293)
T ss_pred HHHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCCcCHHHHHHHHHHHHH
Confidence 356778999998 4678999999998888877764433 3457889888866433555555666554
No 53
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=83.16 E-value=2.1 Score=32.03 Aligned_cols=44 Identities=20% Similarity=0.169 Sum_probs=38.8
Q ss_pred EEECCCCceecceEEeccCChHHHHHHHHhhccCCCCCCHHHHHHH
Q 027320 131 FKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQT 176 (225)
Q Consensus 131 y~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~eea~~l 176 (225)
..+|-+|.....++-..|+||..+-+-+-..|- ..+++||+.++
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewv--kgkt~dea~kI 114 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWV--KGKTLDEALKI 114 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHH--ccccHHHHHhc
Confidence 467889999999999999999999999999994 57999998765
No 54
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=54.97 E-value=8.7 Score=23.21 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=25.5
Q ss_pred eccCChHHHHHHHHhhccCCCCCCHHHHHHHHHHH
Q 027320 146 SAGLKEQEAINFLEKKMKNDPAFTFQETVQTAIST 180 (225)
Q Consensus 146 aiG~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~ 180 (225)
+.|+....+...+.+... .++++.++.++.+++.
T Consensus 12 ~LGy~~~e~~~av~~~~~-~~~~~~e~~ik~aLk~ 45 (47)
T PF07499_consen 12 SLGYSKAEAQKAVSKLLE-KPGMDVEELIKQALKL 45 (47)
T ss_dssp HTTS-HHHHHHHHHHHHH-STTS-HHHHHHHHHCC
T ss_pred HcCCCHHHHHHHHHHhhc-CCCCCHHHHHHHHHhh
Confidence 468899999999998764 6789999988877653
No 55
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....
Probab=50.99 E-value=34 Score=23.63 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=22.5
Q ss_pred EEEEEEcCCCcEEEcCHHHHHHHHHHh
Q 027320 195 EVGVVSKENPEFRVLSIEEIDEHLTAI 221 (225)
Q Consensus 195 ei~iv~~~~~~~~~~~~~ei~~~l~~~ 221 (225)
-|.+.++++..|+.++|++|..+...-
T Consensus 20 ~I~Wt~~~~~eFki~d~~~vA~lWG~~ 46 (85)
T PF00178_consen 20 IIAWTGKRGGEFKIVDPEAVARLWGKH 46 (85)
T ss_dssp TEEEEETSTTEEEESSHHHHHHHHHHH
T ss_pred eeEeeccCCCeEEecCHHHHHHHHHHH
Confidence 478888787789999999999887653
No 56
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=45.20 E-value=34 Score=23.80 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=21.7
Q ss_pred EEEEEEcCCCcEEEcCHHHHHHHHHH
Q 027320 195 EVGVVSKENPEFRVLSIEEIDEHLTA 220 (225)
Q Consensus 195 ei~iv~~~~~~~~~~~~~ei~~~l~~ 220 (225)
-|.+.+++++.|+.+++++|......
T Consensus 20 ~I~W~~k~~g~Fkl~~~~~vA~lWG~ 45 (87)
T smart00413 20 IIRWTDRDGGEFKLVDPEEVARLWGQ 45 (87)
T ss_pred eEEeeCCCCCEEEecCHHHHHHHHhh
Confidence 57888887778999999999888754
No 57
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=44.81 E-value=32 Score=21.38 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcC
Q 027320 167 AFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKE 202 (225)
Q Consensus 167 ~~s~eea~~l~~~~l~~~~~~d~~~~~vei~iv~~~ 202 (225)
.-|+|||++.|..-|. +....+++-|+.+.
T Consensus 4 gkt~eeAi~~A~~~l~------~~~~~~~~eVi~~g 33 (52)
T PF14804_consen 4 GKTVEEAIEKALKELG------VPREELEYEVIEEG 33 (52)
T ss_dssp ESSHHHHHHHHHHHTT--------GGGEEEEEEE--
T ss_pred ECCHHHHHHHHHHHhC------CChHHEEEEEEEcC
Confidence 3588999998777653 33346899999874
No 58
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=42.47 E-value=1.1e+02 Score=21.04 Aligned_cols=52 Identities=12% Similarity=0.181 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHHhh
Q 027320 166 PAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 222 (225)
Q Consensus 166 ~~~s~eea~~l~~~~l~~~~~~d~~~~~vei~iv~~~~~~~~~~~~~ei~~~l~~~~ 222 (225)
+.++.++..+.+..... -.....|.+.|++.+|--+..-+.+|+++.++-++
T Consensus 18 ~~~s~e~L~~~v~~~c~-----~~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl~~ 69 (83)
T cd06404 18 PSISLEELCNEVRDMCR-----FHNDQPFTLKWIDEEGDPCTISSQMELEEAFRLYE 69 (83)
T ss_pred CCcCHHHHHHHHHHHhC-----CCCCCcEEEEEECCCCCceeecCHHHHHHHHHHHH
Confidence 45788877777555432 22334799999999986688889999988876544
No 59
>PRK09732 hypothetical protein; Provisional
Probab=40.96 E-value=77 Score=23.86 Aligned_cols=37 Identities=5% Similarity=0.127 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCC
Q 027320 165 DPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENP 204 (225)
Q Consensus 165 ~~~~s~eea~~l~~~~l~~~~~~d~~~~~vei~iv~~~~~ 204 (225)
.+.||++.|.+++..++..+.+... .+.|+|++..|.
T Consensus 4 ~~~Ltl~~A~~~~~aA~~~A~~~g~---~v~iaVvD~~G~ 40 (134)
T PRK09732 4 KVILSQQMASAIIAAGQEEAQKNNW---SVSIAVADDGGH 40 (134)
T ss_pred cccCCHHHHHHHHHHHHHHHHHhCC---CEEEEEEcCCCC
Confidence 3569999999999999988875432 699999998874
No 60
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=39.93 E-value=57 Score=19.90 Aligned_cols=32 Identities=25% Similarity=0.226 Sum_probs=27.0
Q ss_pred EEECCCCceecceEEeccCChHHHHHHHHhhc
Q 027320 131 FKCDPAGHFFGHKATSAGLKEQEAINFLEKKM 162 (225)
Q Consensus 131 y~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~ 162 (225)
|.|+|+|.....--...|.....+...||+..
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 67899999988777788988888888888764
No 61
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=39.89 E-value=38 Score=25.08 Aligned_cols=36 Identities=11% Similarity=0.314 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCC
Q 027320 166 PAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENP 204 (225)
Q Consensus 166 ~~~s~eea~~l~~~~l~~~~~~d~~~~~vei~iv~~~~~ 204 (225)
|.++.++|.+++..++..+.++.. ++.|+|++..|.
T Consensus 1 p~l~~~~A~~l~~~a~~~a~~~g~---~v~iaVvd~~G~ 36 (132)
T PF03928_consen 1 PSLTLEDAWKLGDAAVEEARERGL---PVSIAVVDAGGH 36 (132)
T ss_dssp EEE-HHHHHHHHHHHHHHHHHTT------EEEEEETTS-
T ss_pred CCcCHHHHHHHHHHHHHHHHHhCC---CeEEEEEECCCC
Confidence 347899999999999998886543 388888988764
No 62
>KOG3806 consensus Predicted transcription factor [Transcription]
Probab=36.98 E-value=46 Score=26.35 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=21.1
Q ss_pred EEEEEEcCCCcEEEcCHHHHHHHHHH
Q 027320 195 EVGVVSKENPEFRVLSIEEIDEHLTA 220 (225)
Q Consensus 195 ei~iv~~~~~~~~~~~~~ei~~~l~~ 220 (225)
-|+|..++|.+|+.++++||.+.+.+
T Consensus 87 ~I~Wtg~~g~EFkl~dp~eVArlWG~ 112 (177)
T KOG3806|consen 87 IIAWTGKDGLEFKLVDPDEVARLWGA 112 (177)
T ss_pred eeEEeCCCCceEEecCHHHHHHHHhh
Confidence 46777777768999999999988753
No 63
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=34.93 E-value=55 Score=26.31 Aligned_cols=35 Identities=11% Similarity=-0.021 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeC
Q 027320 86 YEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDE 124 (225)
Q Consensus 86 ~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~ 124 (225)
..-+|+..+..|+++++.|.+.|+.+ .++|.|+.-
T Consensus 43 ~~rtP~~~a~Dl~~~i~~y~~~w~~~----~vvLiGYSF 77 (192)
T PF06057_consen 43 SERTPEQTAADLARIIRHYRARWGRK----RVVLIGYSF 77 (192)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHhCCc----eEEEEeecC
Confidence 45688999999999999998877654 457788864
No 64
>PF10632 He_PIG_assoc: He_PIG associated, NEW1 domain of bacterial glycohydrolase; InterPro: IPR019599 This domain has been named NEW1 but its actual function is not known. It is found on proteins which are bacterial galactosidases []. The domain is associated with IPR008009 from INTERPRO, a putative Ig-containing domain.
Probab=34.08 E-value=61 Score=17.56 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=16.7
Q ss_pred eeEEEEEeCCCCcEEEEECCCCc
Q 027320 116 VAMVLSIDEECGPRLFKCDPAGH 138 (225)
Q Consensus 116 ~~ll~G~d~~~gp~Ly~id~~G~ 138 (225)
+..+.|.-+ +.|.||.+-.+|.
T Consensus 5 ~~~v~G~rP-g~pfl~~IpatG~ 26 (29)
T PF10632_consen 5 SPRVFGARP-GSPFLFTIPATGE 26 (29)
T ss_pred cCcEEcccC-CCcEEEEeeccCc
Confidence 445667776 7899999988875
No 65
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=31.05 E-value=51 Score=29.27 Aligned_cols=122 Identities=14% Similarity=0.226 Sum_probs=70.3
Q ss_pred EEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCc
Q 027320 49 FPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGP 128 (225)
Q Consensus 49 ~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp 128 (225)
|+|.++|++|.-|..-+...+.+---. +..+ +|+ +.=|=.|.+...-|. +++|.. +-|
T Consensus 30 yrVGkKIGeGsFG~lf~G~Nl~nne~V-AIKf-----EPr--kS~APQLrdEYr~YK------------lL~g~~--GIP 87 (449)
T KOG1165|consen 30 YRVGKKIGEGSFGVLFLGKNLYNNEPV-AIKF-----EPR--KSEAPQLRDEYRTYK------------LLGGTE--GIP 87 (449)
T ss_pred ceeccccccCcceeeecccccccCceE-EEEe-----ccc--cCCcchHHHHHHHHH------------HHcCCC--CCC
Confidence 788999999998887777666552100 0000 111 112223333332221 234443 579
Q ss_pred EEEEECCCCceecceEEeccCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHH--------HhhhccCCCCcEEEEE
Q 027320 129 RLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQ--------SVLQEDFKASEIEVGV 198 (225)
Q Consensus 129 ~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~--------~~~~~d~~~~~vei~i 198 (225)
++|...|-|.+.-----=.|..-+....++.+. +|++....+|+.-|. ..++||+.+.||-|+-
T Consensus 88 ~vYYFGqeG~~NiLVidLLGPSLEDLFD~CgR~------FSvKTV~miA~Qmi~rie~vH~k~LIYRDIKPdNFLIGr 159 (449)
T KOG1165|consen 88 QVYYFGQEGKYNILVIDLLGPSLEDLFDLCGRR------FSVKTVAMIAKQMITRIEYVHEKDLIYRDIKPDNFLIGR 159 (449)
T ss_pred ceeeeccccchhhhhhhhhCcCHHHHHHHhcCc------ccHHhHHHHHHHHHHHHHHHHhcceeecccCccceeecC
Confidence 999999999765333223466655555555554 577777777777663 3445788887876653
No 66
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=30.23 E-value=1.3e+02 Score=24.31 Aligned_cols=44 Identities=20% Similarity=0.376 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhhhccCCC-CcEEEEEEEcCCCcEEE-cCHHHHHH
Q 027320 172 ETVQTAISTLQSVLQEDFKA-SEIEVGVVSKENPEFRV-LSIEEIDE 216 (225)
Q Consensus 172 ea~~l~~~~l~~~~~~d~~~-~~vei~iv~~~~~~~~~-~~~~ei~~ 216 (225)
|++...+..|...+..|..+ ..++|+|||-++. .+. .+--++..
T Consensus 22 ealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~-a~~~~pf~~~~n 67 (207)
T COG4245 22 EALNAGLQMMIDTLKQDPYALERVELSIVTFGGP-ARVIQPFTDAAN 67 (207)
T ss_pred HHHHHHHHHHHHHHHhChhhhheeEEEEEEecCc-ceEEechhhHhh
Confidence 45566666677777677665 4799999999975 443 34444443
No 67
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=29.47 E-value=1.3e+02 Score=21.24 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=24.4
Q ss_pred CCcEEEEEEEcCCCc-EEEcCHHHHHHHHHHhh
Q 027320 191 ASEIEVGVVSKENPE-FRVLSIEEIDEHLTAIS 222 (225)
Q Consensus 191 ~~~vei~iv~~~~~~-~~~~~~~ei~~~l~~~~ 222 (225)
++.+-|.|++++.+. +|.+.++++-.+..+|.
T Consensus 65 ~~~~vVkViD~~T~eVIRqIP~Ee~l~l~~~l~ 97 (107)
T PF03646_consen 65 SGRVVVKVIDKETGEVIRQIPPEELLDLAKRLR 97 (107)
T ss_dssp TTEEEEEEEETTT-SEEEEE-HHHHHHHHHHHH
T ss_pred CCcEEEEEEECCCCcEEEeCCcHHHHHHHHHHH
Confidence 456889999988654 68999999988887775
No 68
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=25.94 E-value=1.3e+02 Score=19.63 Aligned_cols=33 Identities=12% Similarity=0.127 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 027320 70 VQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQ 102 (225)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~ 102 (225)
.+.+.+.........|++++.+.+|..+.--..
T Consensus 3 l~~i~~a~~~L~~~lgr~Pt~eEiA~~lgis~~ 35 (78)
T PF04539_consen 3 LRKIERARRELEQELGREPTDEEIAEELGISVE 35 (78)
T ss_dssp HHHHHHHHHHHHHHHSS--BHHHHHHHHTS-HH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHcccHH
Confidence 344555556667789999999999998754443
No 69
>KOG1930 consensus Focal adhesion protein Tensin, contains PTB domain [Signal transduction mechanisms; Cytoskeleton]
Probab=25.40 E-value=44 Score=30.12 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=15.2
Q ss_pred hhccCCCCCCHHHHHHHHHH
Q 027320 160 KKMKNDPAFTFQETVQTAIS 179 (225)
Q Consensus 160 ~~~~~~~~~s~eea~~l~~~ 179 (225)
|.| |+|++|.|+|+.+.++
T Consensus 212 KyW-YKP~isREQAIalLrd 230 (483)
T KOG1930|consen 212 KYW-YKPNISREQAIALLRD 230 (483)
T ss_pred ccc-cCCCCCHHHHHHHhhc
Confidence 456 5899999999999544
No 70
>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of archaeal proteins with similarity to Sulfurisphaera ohwakuensis DNA polymerase B3. B3 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B3 exhibits both polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Archaeal proteins that are involved in DNA replicatio
Probab=25.33 E-value=40 Score=26.72 Aligned_cols=58 Identities=16% Similarity=0.072 Sum_probs=37.0
Q ss_pred EEEEEcCCE-EEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHH
Q 027320 18 SIGVRGKDS-VCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARY 75 (225)
Q Consensus 18 ~vgi~~~dg-vvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~ 75 (225)
+||..+.+| +-+.+.+..+..-+..+-.+-|.+.++.+++++.|..-|.-.+.++++.
T Consensus 28 ~Is~~~~~g~~~~~~~~~~~E~~lL~~F~~~i~~~dPd~i~gyN~~~FDlpyl~~Ra~~ 86 (188)
T cd05781 28 VISLATSNGDVEFILAEGLDDRKIIREFVKYVKEYDPDIIVGYNSNAFDWPYLVERARV 86 (188)
T ss_pred EEEEEeCCCCEEEEEecCCCHHHHHHHHHHHHHHcCCCEEEecCCCcCcHHHHHHHHHH
Confidence 456666444 3333333333222222345566778899999999999999999999865
No 71
>PF01242 PTPS: 6-pyruvoyl tetrahydropterin synthase; InterPro: IPR007115 The complex organic chemistry involved in the transformation of GTP to tetrahydrobiopterin is catalysed by only three enzymes: GTP cyclohydrolase I, 6-pyruvoyltetrahydropterin synthase and sepiapterin reductase. Tetrahydrobiopterin is the cofactor for several aromatic amino acid monooxygenases and the nitric oxide synthases. 6-Pyruvoyl tetrahydropterin synthase (PTPS) [] is a Zn-dependent metalloprotein, transforms dihydroneopterin triphosphate into 6-pyruvoyltetrahydropterin in the presence of Mg(II) and for which the crystal structure is known. The enzyme is a homohexameric, composed of a dimer of trimers. A transition metal binding site formed by the three histidine residues 23, 48 and 50 is present in each subunit, and bound Zn(II) is responsible for the enzymatic activity. Site-directed mutagenesis of each of these three histidine residues results in a complete loss of metal binding and enzymatic activity [, ]. The function of the bacterial branch of the sequence lineage appears not to have been established.; GO: 0003874 6-pyruvoyltetrahydropterin synthase activity, 0046872 metal ion binding, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 3QNA_E 3QN9_A 3QN0_B 1Y13_C 3D7J_A 3I2B_J 2OBA_D 3M0N_A 2A0S_A 3LZE_A ....
Probab=25.18 E-value=1e+02 Score=22.35 Aligned_cols=46 Identities=20% Similarity=0.336 Sum_probs=29.5
Q ss_pred ecchHHHHHHHHHHHHHHHHHHHHcC------C----CCCHHHHHHHHHHHHHHhh
Q 027320 60 TGMTADARTLVQQARYEAAEFRFKYG------Y----EMPVDVLAKWIADKSQVYT 105 (225)
Q Consensus 60 sG~~~D~~~l~~~~~~~~~~~~~~~~------~----~~~~~~la~~ls~~~~~~t 105 (225)
.|+.-|+..+.+.++..+..+.+.+= . .++++.+|.+|...++...
T Consensus 43 ~g~v~DF~~lk~~~~~i~~~lDh~~Ln~~~~~~~~~~~pT~E~lA~~i~~~l~~~l 98 (123)
T PF01242_consen 43 DGMVVDFGDLKKIIKEIDDQLDHKFLNEDDPEFDDINNPTAENLARWIFERLKEKL 98 (123)
T ss_dssp TSSSS-HHHHHHHHHHHHHHHTTEEGGHHSGCGCSSTS--HHHHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHHHhCcccccCCChhhhccCCCCHHHHHHHHHHHHHHHh
Confidence 46677888888888775554433211 0 1789999999999987653
No 72
>PRK08868 flagellar protein FlaG; Provisional
Probab=24.79 E-value=3.2e+02 Score=20.90 Aligned_cols=33 Identities=21% Similarity=0.187 Sum_probs=26.6
Q ss_pred CCcEEEEEEEcCCC-cEEEcCHHHHHHHHHHhhc
Q 027320 191 ASEIEVGVVSKENP-EFRVLSIEEIDEHLTAISE 223 (225)
Q Consensus 191 ~~~vei~iv~~~~~-~~~~~~~~ei~~~l~~~~~ 223 (225)
++.+-|.|++++.+ -+|.+.++++-.+..+|.+
T Consensus 99 tgr~VVkViD~~T~EVIRQIP~Ee~L~la~~l~e 132 (144)
T PRK08868 99 SGRDVVTIYEASTGDIIRQIPDEEMLEVLRRLAE 132 (144)
T ss_pred CCCEEEEEEECCCCceeeeCCCHHHHHHHHHHHH
Confidence 44688999998754 4788999999999888763
No 73
>PRK10465 hydrogenase 2-specific chaperone; Provisional
Probab=24.57 E-value=49 Score=25.72 Aligned_cols=72 Identities=19% Similarity=0.236 Sum_probs=51.5
Q ss_pred cccceeEEE-EEeCC-----CCcEEEEECCCCceecceEEeccCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhh
Q 027320 112 PLGVVAMVL-SIDEE-----CGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL 185 (225)
Q Consensus 112 P~~v~~ll~-G~d~~-----~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~ 185 (225)
||-.++++. |-+++ -|-.+..-=|+|.+.-.-.---|.|.+.++++..-. .+-.+-++|+.+|..|++.++
T Consensus 59 PWfmnLV~LPg~~q~w~~~~~G~k~~~~lP~G~~~F~~~~~~~~G~y~sCSLfSPm---~~f~~~~~A~~~A~a~l~~ll 135 (159)
T PRK10465 59 PWMLSAVILPGPDQLWPRRKVGEKLGLQLPYGTMTFTVGELDGVSQYLSCSLMSPL---DPSLSAEQGVRLADDCARMLL 135 (159)
T ss_pred hhhHhheeccCcccccccCCCcceEEEecCCceEEEEeecCCCCcceeEeeccCCc---ccccCHHHHHHHHHHHHHHHh
Confidence 666666653 32211 244556667999887665556688888888888775 356899999999999999887
Q ss_pred h
Q 027320 186 Q 186 (225)
Q Consensus 186 ~ 186 (225)
.
T Consensus 136 s 136 (159)
T PRK10465 136 S 136 (159)
T ss_pred c
Confidence 4
No 74
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=24.22 E-value=2e+02 Score=21.95 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=29.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCC
Q 027320 165 DPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENP 204 (225)
Q Consensus 165 ~~~~s~eea~~l~~~~l~~~~~~d~~~~~vei~iv~~~~~ 204 (225)
.+.+++++|.+++..++..+.+. --.+.++|++..|.
T Consensus 5 ~~~Ls~e~a~~ii~aA~a~a~~~---g~~VtvaVVD~~G~ 41 (141)
T COG3193 5 KPVLSLELANKIIAAAVAEAQQL---GVPVTVAVVDAGGH 41 (141)
T ss_pred ccccCHHHHHHHHHHHHHHHHHh---CCceEEEEECCCCC
Confidence 46799999999999998877643 22699999998873
No 75
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=22.42 E-value=1.2e+02 Score=24.42 Aligned_cols=37 Identities=16% Similarity=0.357 Sum_probs=28.3
Q ss_pred EeccCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHH
Q 027320 145 TSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTL 181 (225)
Q Consensus 145 ~aiG~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l 181 (225)
.+.|.....+...+++.....++++.++.++.|++.|
T Consensus 160 ~~LGy~~~ea~~al~~i~~~~~~~~~e~lir~aLk~l 196 (197)
T PRK14603 160 LALGFREAQVRSVVAELLAQNPEASAQTLIRKALKRL 196 (197)
T ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Confidence 4579999999999988753345788888888877765
No 76
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=22.33 E-value=99 Score=26.13 Aligned_cols=57 Identities=16% Similarity=0.176 Sum_probs=37.8
Q ss_pred cceeEE--EEEeCCCCcEEEEECCCCceecc---eEEeccCChHHHHHHHHhhccCCCCCCHHHHHHHHHHH
Q 027320 114 GVVAMV--LSIDEECGPRLFKCDPAGHFFGH---KATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAIST 180 (225)
Q Consensus 114 ~v~~ll--~G~d~~~gp~Ly~id~~G~~~~~---~~~aiG~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~ 180 (225)
.+..++ +|.|. .+..+|..|....+ ..||-|.|+ |||..-+ .=+++++|.-+++.++
T Consensus 97 ~~~tIiDIGGQD~----K~I~~~~~G~v~~f~MNdkCAAGTG~-----FLe~~A~-~L~i~leel~~~a~~~ 158 (262)
T TIGR02261 97 EARAVLDIGALHG----RAIRMDERGKVEAYKMTSQCASGSGQ-----FLENIAR-YLGIAQDEIGSLSQQA 158 (262)
T ss_pred CCCEEEEeCCCce----EEEEEcCCCcEeeEEecCcccccccH-----HHHHHHH-HhCCCHHHHHHHHhcC
Confidence 555555 67764 36788999998865 488899998 4554321 2257888777765444
No 77
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=22.02 E-value=1.6e+02 Score=23.69 Aligned_cols=37 Identities=22% Similarity=0.435 Sum_probs=29.5
Q ss_pred EeccCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHH
Q 027320 145 TSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTL 181 (225)
Q Consensus 145 ~aiG~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l 181 (225)
.+.|+....+...+++..+..++++.+|.++.|++.|
T Consensus 163 ~~LGy~~~ea~~av~~~~~~~~~~~~e~lir~ALk~l 199 (203)
T PRK14602 163 ANLGYGEEEARPVLKEVLEEEPDLDVGGALRAALKAL 199 (203)
T ss_pred HHcCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Confidence 4579999999999998754346789998888887776
No 78
>COG4728 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.38 E-value=1e+02 Score=22.17 Aligned_cols=31 Identities=29% Similarity=0.313 Sum_probs=27.0
Q ss_pred eeEEecCcEEEEEecchHHHHHHHHHHHHHH
Q 027320 47 HLFPITKYLGLLATGMTADARTLVQQARYEA 77 (225)
Q Consensus 47 Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 77 (225)
-+|+|-+..++.+-|..+|+-.+.+.++...
T Consensus 9 ~~~~i~~~~gl~~v~~~~~~s~~~~k~~~~~ 39 (124)
T COG4728 9 IIFKIKDKLGLTFVSKSADMSIQVEKAERLI 39 (124)
T ss_pred EEEEEhhhcCcEEEEecchhHHHHHHHHHhh
Confidence 4689999999999999999999999887764
Done!