Query 027320
Match_columns 225
No_of_seqs 117 out of 1115
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 13:21:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027320.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027320hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ryp_A 20S proteasome; multica 100.0 1.5E-59 5E-64 390.1 28.0 223 1-225 16-243 (243)
2 1iru_A 20S proteasome; cell cy 100.0 1.1E-58 3.6E-63 385.6 29.1 225 1-225 22-246 (246)
3 1iru_B 20S proteasome; cell cy 100.0 2.5E-57 8.6E-62 374.4 27.7 216 1-222 18-233 (233)
4 1ryp_C 20S proteasome; multica 100.0 9.4E-57 3.2E-61 373.4 29.4 220 1-223 18-243 (244)
5 3h4p_A Proteasome subunit alph 100.0 1.1E-57 3.7E-62 382.6 22.1 218 1-223 25-242 (264)
6 1iru_C 20S proteasome; cell cy 100.0 1.3E-56 4.6E-61 375.9 28.2 221 1-224 18-243 (261)
7 1ryp_D 20S proteasome; multica 100.0 1.9E-56 6.6E-61 370.9 28.5 219 1-223 15-236 (241)
8 1ryp_E 20S proteasome; multica 100.0 6.3E-57 2.2E-61 374.0 25.0 220 1-224 13-238 (242)
9 1yar_A Proteasome alpha subuni 100.0 2E-56 7E-61 369.0 27.2 213 1-218 21-233 (233)
10 1iru_D 20S proteasome; cell cy 100.0 2E-56 6.8E-61 372.3 25.5 218 1-224 16-235 (248)
11 1iru_G 20S proteasome; cell cy 100.0 6.5E-56 2.2E-60 370.3 27.1 219 1-222 20-240 (254)
12 1ryp_B 20S proteasome; multica 100.0 1.5E-55 5E-60 367.4 27.8 218 1-221 18-250 (250)
13 1j2p_A Alpha-ring, proteasome 100.0 2.3E-55 8E-60 365.4 28.7 217 1-223 21-238 (246)
14 1iru_F 20S proteasome; cell cy 100.0 8.5E-56 2.9E-60 371.2 24.9 217 1-222 19-237 (263)
15 1iru_E 20S proteasome; cell cy 100.0 1.5E-55 5E-60 365.6 25.6 216 1-221 21-241 (241)
16 1ryp_F 20S proteasome; multica 100.0 9.4E-56 3.2E-60 365.1 22.6 212 1-218 18-233 (233)
17 3nzj_F Proteasome component C1 100.0 1.2E-54 4.1E-59 367.5 27.3 215 1-217 21-239 (288)
18 1ryp_G 20S proteasome; multica 100.0 4.9E-54 1.7E-58 357.0 28.4 218 1-222 17-239 (244)
19 3mi0_A Proteasome subunit alph 100.0 1.9E-52 6.5E-57 347.4 27.1 208 3-222 16-238 (248)
20 1q5q_A Proteasome alpha-type s 100.0 2.2E-51 7.4E-56 343.7 23.3 210 2-223 15-237 (259)
21 3h4p_a Proteasome subunit beta 100.0 3.6E-50 1.2E-54 328.7 23.7 201 15-223 1-204 (219)
22 1yar_H Proteasome beta subunit 100.0 5.9E-49 2E-53 321.1 26.0 204 9-222 3-208 (217)
23 1j2q_H Proteasome beta subunit 100.0 1.2E-48 4.2E-53 315.9 25.5 198 16-222 1-201 (202)
24 1q5r_H Proteasome beta-type su 100.0 1.1E-48 3.7E-53 332.0 24.3 211 7-223 58-284 (294)
25 2jay_A Proteasome; hydrolase; 100.0 1.4E-48 4.9E-53 330.9 24.1 213 4-223 48-276 (291)
26 3nzj_K Proteasome component PR 100.0 8.3E-49 2.8E-53 331.6 22.2 209 6-223 67-277 (287)
27 1q5q_H Proteasome beta-type su 100.0 4.9E-48 1.7E-52 319.3 25.0 203 16-223 1-219 (235)
28 1ryp_L 20S proteasome; multica 100.0 4E-48 1.4E-52 315.1 22.4 200 16-223 1-202 (212)
29 1iru_N 20S proteasome; cell cy 100.0 5.1E-49 1.7E-53 321.9 16.5 204 9-218 3-209 (219)
30 1iru_H 20S proteasome; cell cy 100.0 2.6E-48 8.8E-53 314.7 19.2 198 16-220 1-200 (205)
31 1iru_L 20S proteasome; cell cy 100.0 1.1E-47 3.8E-52 310.7 22.7 199 16-223 1-201 (204)
32 1ryp_N 20S proteasome; multica 100.0 1.7E-48 5.8E-53 321.6 15.5 205 9-217 3-217 (233)
33 1iru_M 20S proteasome; cell cy 100.0 4.5E-46 1.5E-50 303.2 24.3 187 14-204 8-203 (213)
34 1ryp_K 20S proteasome; multica 100.0 4.7E-46 1.6E-50 299.8 23.6 190 16-211 2-194 (198)
35 1ryp_H 20S proteasome; multica 100.0 1.9E-46 6.5E-51 303.7 20.7 188 8-204 3-192 (205)
36 3nzj_H Proteasome component PU 100.0 6.1E-46 2.1E-50 310.5 24.3 194 7-210 22-217 (261)
37 1g0u_M Proteasome component PR 100.0 1.5E-47 5.1E-52 321.6 14.3 208 6-217 33-250 (266)
38 3unf_H Proteasome subunit beta 100.0 5.6E-46 1.9E-50 306.4 21.6 191 16-216 1-193 (234)
39 1ryp_M 20S proteasome; multica 100.0 2.2E-45 7.5E-50 301.0 24.1 189 11-204 6-212 (222)
40 3unf_N Proteasome subunit beta 100.0 2.2E-46 7.6E-51 301.9 17.6 195 16-219 1-198 (199)
41 1iru_J 20S proteasome; cell cy 100.0 7.4E-45 2.5E-49 294.4 24.3 190 14-209 7-200 (205)
42 1iru_K 20S proteasome; cell cy 100.0 5.1E-45 1.7E-49 294.5 22.7 189 16-210 2-192 (201)
43 1ryp_J 20S proteasome; multica 100.0 2.4E-44 8.2E-49 291.2 25.1 189 14-209 7-199 (204)
44 1ryp_I 20S proteasome; multica 100.0 2.2E-44 7.7E-49 295.0 24.0 186 16-210 1-188 (222)
45 1iru_I 20S proteasome; cell cy 100.0 2.2E-43 7.4E-48 291.2 23.5 186 16-211 1-188 (234)
46 2z3b_A ATP-dependent protease 100.0 4.2E-37 1.4E-41 244.1 17.9 169 14-199 4-179 (180)
47 1m4y_A ATP-dependent protease 100.0 1.2E-36 4.3E-41 239.5 18.0 166 16-199 1-171 (171)
48 1g3k_A ATP-dependent protease 100.0 2.3E-36 7.9E-41 238.6 17.7 167 16-200 1-173 (174)
49 1vd2_A Protein kinase C, IOTA 50.2 39 0.0013 22.6 5.3 53 165-222 23-75 (89)
50 2hc5_A ORF 99, hypothetical pr 42.0 58 0.002 22.9 5.5 32 191-222 66-98 (117)
51 1yo5_C SAM pointed domain cont 41.5 37 0.0013 23.1 4.2 26 195-220 30-55 (97)
52 2dao_A Transcription factor ET 35.1 41 0.0014 23.8 3.7 26 195-220 27-52 (118)
53 3fpw_A HBPS, extracellular HAE 30.0 89 0.0031 24.0 5.2 37 165-204 62-98 (192)
54 3jtg_A ETS-related transcripti 29.9 69 0.0024 22.0 4.1 25 196-220 25-49 (103)
55 3kol_A Oxidoreductase, glyoxal 29.4 73 0.0025 21.9 4.5 19 126-144 132-150 (156)
56 1wwx_A E74-like factor 5 ESE-2 28.2 50 0.0017 22.9 3.1 26 195-220 28-53 (107)
57 4gof_A Small glutamine-rich te 25.6 1.1E+02 0.0038 18.2 3.9 35 153-188 8-44 (52)
58 2a2l_A Unknown; structural gen 25.1 65 0.0022 23.4 3.5 36 166-204 10-45 (145)
59 4asv_A Small glutamine-rich te 23.9 1.4E+02 0.0048 20.0 4.6 35 153-188 25-61 (92)
60 4g6x_A Glyoxalase/bleomycin re 23.2 96 0.0033 21.8 4.2 29 114-142 120-148 (155)
61 2lxb_A Small glutamine-rich te 20.6 1.8E+02 0.006 18.7 4.6 35 153-188 13-49 (74)
No 1
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=1.5e-59 Score=390.11 Aligned_cols=223 Identities=48% Similarity=0.791 Sum_probs=212.1
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEF 80 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 80 (225)
|||||||.||++++|+|+|||+++||||||+|+|.+++++.+++.+|||+|++|++|++||+.+|++.+.++++.++..|
T Consensus 16 l~QvEYA~~av~~~Gtt~vgi~~~dgVvlaad~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~ 95 (243)
T 1ryp_A 16 LYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEF 95 (243)
T ss_dssp CHHHHHHHHHTTTTCCCEEEEECSSEEEEEEECCCCCTTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHhcCCCcEEEEEeCCEEEEEEEecCCccccCCCcCCceEEECCCEEEEEEecHHHHHHHHHHHHHHHHHH
Confidence 79999999999944999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHh
Q 027320 81 RFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 160 (225)
Q Consensus 81 ~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~ 160 (225)
+++++++++++.++++|++++|.|++++++|||+|++||||||+++||+||++||+|++.+++++|+|++++.++++||+
T Consensus 96 ~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~a~G~gs~~a~~~Le~ 175 (243)
T 1ryp_A 96 RYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLEN 175 (243)
T ss_dssp HHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEEEECCCcHHHHHHHHH
Confidence 99999999999999999999999999988999999999999997679999999999999999999999999999999999
Q ss_pred hccCCC-----CCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHHhhccC
Q 027320 161 KMKNDP-----AFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD 225 (225)
Q Consensus 161 ~~~~~~-----~~s~eea~~l~~~~l~~~~~~d~~~~~vei~iv~~~~~~~~~~~~~ei~~~l~~~~~~~ 225 (225)
.|++.+ +|+++||++++++||..++++|.+..+++|++|++++ |+.++++||++++.++.++|
T Consensus 176 ~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd~s~~~iev~vi~~~g--~~~l~~~ei~~~~~~~~~~~ 243 (243)
T 1ryp_A 176 HFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDLEVGVATKDK--FFTLSAENIEERLVAIAEQD 243 (243)
T ss_dssp HHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCCCCTTSEEEEEEETTE--EEECCHHHHHHHHHHHTTTC
T ss_pred HhhhcccccccCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCC--eEECCHHHHHHHHHHhhccC
Confidence 996311 8999999999999999999999655589999999986 99999999999999999887
No 2
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=1.1e-58 Score=385.59 Aligned_cols=225 Identities=60% Similarity=0.969 Sum_probs=212.9
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEF 80 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 80 (225)
|||||||.||++++|+|+|||+++||||||+|+|.+++++.+++.+||++|++|++|++||..+|++.+.++++.++..|
T Consensus 22 l~QvEya~~av~~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~ 101 (246)
T 1iru_A 22 LYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANW 101 (246)
T ss_dssp CHHHHHHHHHHHTTCCEEEEEECSSEEEEEEECCCCCSSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHhcCCCCEEEEEeCCEEEEEEeecCCCcccCCCccCceEEECCCEEEEEeccHHHHHHHHHHHHHHHHHH
Confidence 79999999999955999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHh
Q 027320 81 RFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 160 (225)
Q Consensus 81 ~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~ 160 (225)
+++++++++++.+++++++++|.|++++++|||+|++||||||+++||+||++||+|++.+++++|+|+|++.++++||+
T Consensus 102 ~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~ 181 (246)
T 1iru_A 102 KYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEK 181 (246)
T ss_dssp HHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEEETTHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeEEEeeEEEECCCcHHHHHHHHH
Confidence 99999999999999999999999999989999999999999997679999999999999999999999999999999999
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHHhhccC
Q 027320 161 KMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD 225 (225)
Q Consensus 161 ~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~vei~iv~~~~~~~~~~~~~ei~~~l~~~~~~~ 225 (225)
.|++.++|+++||++++++||..+.++|.+..+++|++|++++..|+.++++||++++.++.++|
T Consensus 182 ~~~~~~~ms~eea~~la~~al~~~~~rd~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~~~~~~~ 246 (246)
T 1iru_A 182 KVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAERD 246 (246)
T ss_dssp HTTSCCCCCHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEETTEEEEEECCHHHHHHHHHHHHTC-
T ss_pred hhcccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCCeEEECCHHHHHHHHHHhhccC
Confidence 99643489999999999999999999995545899999999976699999999999999998876
No 3
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=2.5e-57 Score=374.45 Aligned_cols=216 Identities=35% Similarity=0.580 Sum_probs=207.0
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEF 80 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 80 (225)
|||||||.||+++ |+|+|||+++||||||+|+|.+++++.+++.+||++|++|++|++||..+|++.+.++++.++..|
T Consensus 18 l~QvEya~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~ 96 (233)
T 1iru_B 18 LVQIEYALAAVAG-GAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQY 96 (233)
T ss_dssp CHHHHHHHHHHHT-SCCEEEEECSSCEEEEEECCCCCSSBCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred EehhHhHHHHHHc-CCcEEEEEeCCEEEEEEEecCCccccccccCCeEEEECCCEEEEEEEccHHHHHHHHHHHHHHHHH
Confidence 7999999999996 999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHh
Q 027320 81 RFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 160 (225)
Q Consensus 81 ~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~ 160 (225)
+++++++++++.+++++++++|.|++++++|||++++||||||+ +||+||.+||+|++.+++++|+|+|++.++++||+
T Consensus 97 ~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~ 175 (233)
T 1iru_B 97 YLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNE-GRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEK 175 (233)
T ss_dssp HHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECS-SSEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeC-CCCeEEEECCCCCEEEeeEEEECCCCHHHHHHHHH
Confidence 99999999999999999999999999989999999999999995 79999999999999999999999999999999999
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHHhh
Q 027320 161 KMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 222 (225)
Q Consensus 161 ~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~vei~iv~~~~~~~~~~~~~ei~~~l~~~~ 222 (225)
.|+ ++||+|||++++++||..+.++|.+..+++|++|++++ |+.++++||++++.+++
T Consensus 176 ~~~--~~ms~eea~~la~~al~~~~~~d~sg~~i~v~vi~~~g--~~~l~~~ei~~~~~~~~ 233 (233)
T 1iru_B 176 RYN--EDLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAG--FRRLTPTEVKDYLAAIA 233 (233)
T ss_dssp HCC--TTCCHHHHHHHHHHHHHTTCCSCCCSSSEEEEEEETTE--EEECCHHHHHHHHTTCC
T ss_pred Hhc--cCCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCC--EEECCHHHHHHHHHhcC
Confidence 984 78999999999999999999999665689999999985 99999999999998763
No 4
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=9.4e-57 Score=373.40 Aligned_cols=220 Identities=26% Similarity=0.497 Sum_probs=207.5
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccc-cCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAE 79 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~ 79 (225)
|||||||.||+++ |+|+|||+++||||||+|+|.+..++. +++.+||++|++|++|++||..+|++.+.++++.++..
T Consensus 18 l~QvEyA~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~ 96 (244)
T 1ryp_C 18 LYQVEYALESISH-AGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQN 96 (244)
T ss_dssp BHHHHHHHHHHTT-SCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred eHHHHhHHHHHhc-CCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 6999999999996 999999999999999999999966665 88999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHH
Q 027320 80 FRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLE 159 (225)
Q Consensus 80 ~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le 159 (225)
|+++++++++++.+++++++++|.|++++++|||++++||||||+++||+||.+||+|++.+++++|+|+|++.++++||
T Consensus 97 ~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le 176 (244)
T 1ryp_C 97 YLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQ 176 (244)
T ss_dssp HHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEEEECCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999547999999999999999999999999999999999
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHhhhc-cCCCCcEEEEEEE--cCCCc--EEEcCHHHHHHHHHHhhc
Q 027320 160 KKMKNDPAFTFQETVQTAISTLQSVLQE-DFKASEIEVGVVS--KENPE--FRVLSIEEIDEHLTAISE 223 (225)
Q Consensus 160 ~~~~~~~~~s~eea~~l~~~~l~~~~~~-d~~~~~vei~iv~--~~~~~--~~~~~~~ei~~~l~~~~~ 223 (225)
+.| +++|++|||++++++||..+.++ +++..+++|++|+ +++++ |+.++++||++++.++..
T Consensus 177 ~~~--~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~~~~~~l~~~ei~~~~~~~~~ 243 (244)
T 1ryp_C 177 MDY--KDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDILVKTGI 243 (244)
T ss_dssp HHC--CTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEEEECCHHHHHHHHHHHTC
T ss_pred Hhh--hcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCceeEEECCHHHHHHHHHHhhc
Confidence 998 47899999999999999999999 5654489999999 88765 999999999999998763
No 5
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.1e-57 Score=382.64 Aligned_cols=218 Identities=33% Similarity=0.592 Sum_probs=208.1
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEF 80 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 80 (225)
|||||||.|||++ |+|+|||+++||||||+|+|.+++++.+++.+||++|++|++|+++|+.+|++.+.++++.+++.|
T Consensus 25 l~QvEYA~~av~~-Gtt~vgi~~~dgVVlaaD~r~~~~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y 103 (264)
T 3h4p_A 25 LYQVEYAREAVRR-GTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIY 103 (264)
T ss_dssp CHHHHHHHHHHHH-SCCEEEECCSSEEEEEEECCCCSTTBCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTHHHHHHHH
T ss_pred eHHHHhHHHHHhc-CCcEEEEEECCEEEEEEecCccCCccccCccccEEEecCcEEEEeccchHHHHHHHHHHHHHHHhh
Confidence 7999999999995 999999999999999999999977888899999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHh
Q 027320 81 RFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 160 (225)
Q Consensus 81 ~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~ 160 (225)
++.++++++++.++++|++++|.||+++++|||+|++||||||+ +||+||++||+|++.+++++|+|+|++.++++||+
T Consensus 104 ~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~-~gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~ 182 (264)
T 3h4p_A 104 RLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDK-NEARLFETDPSGALIEYKATAIGSGRPVVMELLEK 182 (264)
T ss_dssp HHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEET-TEEEEEEECTTCCCEEESEEEESTTHHHHTTTHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeC-CcCEEEEECCCceEEecCeEEECCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999996 79999999999999999999999999999999999
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHHhhc
Q 027320 161 KMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISE 223 (225)
Q Consensus 161 ~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~vei~iv~~~~~~~~~~~~~ei~~~l~~~~~ 223 (225)
.| +++|+++||++++++||..+.++ .+..+++|++|++++.+|+.++++||+.++.++.+
T Consensus 183 ~~--~~~ms~eea~~la~~al~~a~~~-~sg~~iev~vi~~~~~~~~~l~~~ei~~~~~~~~~ 242 (264)
T 3h4p_A 183 EY--RDDITLDEGLELAITALTKANED-IKPENVDVCIITVKDAQFKKIPVEEIKKLIEKVKK 242 (264)
T ss_dssp HC--CTTCCSHHHHHHHHHHHHHHSSS-CCTTSEEEEEEETTTTEEEECCTTTTGGGTTTTTT
T ss_pred hc--cCCCCHHHHHHHHHHHHHHHHhc-cCCCeEEEEEEEeCCCcEEECCHHHHHHHHHHHHH
Confidence 98 47899999999999999999987 65568999999998778999999999999988763
No 6
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=1.3e-56 Score=375.85 Aligned_cols=221 Identities=26% Similarity=0.463 Sum_probs=206.8
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccc-cCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAE 79 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~ 79 (225)
|||||||.||+++ |+|+|||+++||||||+|+|.+..+.. .++.+||++|++|++|++||..+|++.+.++++.++..
T Consensus 18 l~QvEYA~~av~~-Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~ 96 (261)
T 1iru_C 18 LYQVEYAMEAIGH-AGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQR 96 (261)
T ss_dssp CHHHHHHHHHHTT-SCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred ehHHHhHHHHHhc-CCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHHHHHHHH
Confidence 7999999999995 999999999999999999999955544 44599999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHH
Q 027320 80 FRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLE 159 (225)
Q Consensus 80 ~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le 159 (225)
|+++++++++++.+++++++++|.|+++.++|||+|++||||||+++||+||.+||+|++.+++++|+|+|++.++++||
T Consensus 97 ~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le 176 (261)
T 1iru_C 97 YLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLK 176 (261)
T ss_dssp HHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSEEEESTTTTHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeeeeEEeCcccHHHHHHHH
Confidence 99999999999999999999999999998999999999999999657899999999999999999999999999999999
Q ss_pred hhccCCC-CCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCc--EEEcCHHHHHHHHHHhhcc
Q 027320 160 KKMKNDP-AFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPE--FRVLSIEEIDEHLTAISER 224 (225)
Q Consensus 160 ~~~~~~~-~~s~eea~~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~~--~~~~~~~ei~~~l~~~~~~ 224 (225)
+.|+ + +||++||++++++||..+.++|..++ +++|++|+++++. |+.++++||++++.++.++
T Consensus 177 ~~~~--~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l~~~ei~~~l~~~~~~ 243 (261)
T 1iru_C 177 QDYK--EGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKHEEE 243 (261)
T ss_dssp HHCC--TTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECCHHHHHHHHHHHHTT
T ss_pred Hhhc--cCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEECCHHHHHHHHHHHHhc
Confidence 9984 6 89999999999999999999987655 7999999998753 8999999999999998654
No 7
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=1.9e-56 Score=370.91 Aligned_cols=219 Identities=31% Similarity=0.521 Sum_probs=204.9
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccC-CcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHT-SVTHLFPITKYLGLLATGMTADARTLVQQARYEAAE 79 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~-~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~ 79 (225)
|||||||.||+++ |+|+|||+++||||||+|+|.+..++..+ +.+||++|++|++|+++|..+|++.+.++++.++..
T Consensus 15 l~QvEya~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~ 93 (241)
T 1ryp_D 15 IFQVEYALEAVKR-GTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQS 93 (241)
T ss_dssp CHHHHHHHHHHTT-SCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHc-CCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHHHHHHHH
Confidence 7999999999996 99999999999999999999995555554 899999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCC-CCcEEEEECCCCceecceEEeccCChHHHHHHH
Q 027320 80 FRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEE-CGPRLFKCDPAGHFFGHKATSAGLKEQEAINFL 158 (225)
Q Consensus 80 ~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~L 158 (225)
|+++++++++++.+++++++++|.||+++++|||++++||||||++ +||+||.+||+|++.+++++|+|+|++.++++|
T Consensus 94 ~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~L 173 (241)
T 1ryp_D 94 HRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFL 173 (241)
T ss_dssp HHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEESTTHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeEEECCCcHHHHHHH
Confidence 9999999999999999999999999998889999999999999975 789999999999999999999999999999999
Q ss_pred HhhccC-CCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHHhhc
Q 027320 159 EKKMKN-DPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISE 223 (225)
Q Consensus 159 e~~~~~-~~~~s~eea~~l~~~~l~~~~~~d~~~~~vei~iv~~~~~~~~~~~~~ei~~~l~~~~~ 223 (225)
|+.|++ +++|+++||++++++||..+.+ .+..+++|++|++++ +|+.++++||++++.++.+
T Consensus 174 e~~~~~~~~~ms~eea~~l~~~al~~~~~--~sg~~i~v~vi~~~~-~~~~l~~~ei~~~~~~~~~ 236 (241)
T 1ryp_D 174 EKNYDRKEPPATVEECVKLTVRSLLEVVQ--TGAKNIEITVVKPDS-DIVALSSEEINQYVTQIEQ 236 (241)
T ss_dssp HTTCCTTSCCCSHHHHHHHHHHHHHHHHC--SCSTTEEEEEEETTT-EEEECCHHHHHHHHHHHTH
T ss_pred HHhhhcccCCCCHHHHHHHHHHHHHHHhc--CCCCcEEEEEEECCC-cEEECCHHHHHHHHHHHhh
Confidence 999843 5789999999999999999996 555589999999987 4999999999999998864
No 8
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=6.3e-57 Score=374.02 Aligned_cols=220 Identities=25% Similarity=0.487 Sum_probs=207.5
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEF 80 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 80 (225)
|||||||.||+++ |+|+|||+++||||||+|+|.+..++.+++.+||++|++|++|++||..+|++.+.++++.++..|
T Consensus 13 l~QvEyA~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~ 91 (242)
T 1ryp_E 13 LFQVEYSLEAIKL-GSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTH 91 (242)
T ss_dssp BHHHHHHHHHHTT-SCCEEEEECSSCEEEEEECCCSSTTBCGGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHH
T ss_pred ChHHHhHHHHHHc-CCCEEEEEECCEEEEEEeecCCCcCccCccCCceEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHH
Confidence 6999999999996 999999999999999999999966666888999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHhhhccC------cccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHH
Q 027320 81 RFKYGYEMPVDVLAKWIADKSQVYTQHAY------MRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEA 154 (225)
Q Consensus 81 ~~~~~~~~~~~~la~~ls~~~~~~t~~~~------~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~ 154 (225)
+++++++++++.+++++++++|.||++++ .|||++++||||||+++||+||++||+|++.+++++|+|+|++.+
T Consensus 92 ~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a 171 (242)
T 1ryp_E 92 NLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGA 171 (242)
T ss_dssp HHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEeccCEEEECCCCHHH
Confidence 99999999999999999999999999887 899999999999995579999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHHhhcc
Q 027320 155 INFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISER 224 (225)
Q Consensus 155 ~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~vei~iv~~~~~~~~~~~~~ei~~~l~~~~~~ 224 (225)
+++||+.| +++||++||++++++||..+.+++.+..+++|++|++++. |+.++++||++++.++.++
T Consensus 172 ~~~Le~~~--~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~-~~~~~~~ei~~~~~~~~~~ 238 (242)
T 1ryp_E 172 QAELLNEW--HSSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDG-FKIYDNEKTAELIKELKEK 238 (242)
T ss_dssp HHHHHHHC--CTTCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEEETTTE-EEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHhh--ccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-eEECCHHHHHHHHHHHhhh
Confidence 99999998 4789999999999999999999865555899999999985 9999999999999988753
No 9
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=2e-56 Score=369.02 Aligned_cols=213 Identities=35% Similarity=0.573 Sum_probs=203.6
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEF 80 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 80 (225)
|||||||.||+++ |+|+|||+++||||||+|+|.+.+++.+++.+||++|++|++|++||..+|++.+.++++.++..|
T Consensus 21 l~QvEya~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~ 99 (233)
T 1yar_A 21 LFQVEYAREAVKK-GSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQE 99 (233)
T ss_dssp CHHHHHHHHHHTT-SCCEEEEEETTEEEEEECCCCCCTTBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHhHHHHHhc-CCcEEEEEECCEEEEEEeccCCcccccccccCeEEEecCCEEEEEeeCHHHHHHHHHHHHHHHHHH
Confidence 7999999999996 999999999999999999999977888889999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHh
Q 027320 81 RFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 160 (225)
Q Consensus 81 ~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~ 160 (225)
+++++++++++.+++++++++|.|++++++|||++++||||||+ +||+||.+||+|++.+++++|+|+|++.++++||+
T Consensus 100 ~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~ 178 (233)
T 1yar_A 100 KVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLER 178 (233)
T ss_dssp HHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECS-SCEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeC-CCCEEEEECCCCCEEeeeEEEEcCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999997 79999999999999999999999999999999999
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHH
Q 027320 161 KMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHL 218 (225)
Q Consensus 161 ~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~vei~iv~~~~~~~~~~~~~ei~~~l 218 (225)
.|+ ++|+++||++++++||..+.++|++..+++|++|+++++ |+.++++||+++|
T Consensus 179 ~~~--~~~s~eea~~la~~al~~~~~~d~s~~~i~v~vi~~~~~-~~~~~~~ei~~~l 233 (233)
T 1yar_A 179 EYK--ENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNK-YRIYDQEEVKKFL 233 (233)
T ss_dssp HCC--TTCCHHHHHHHHHHHHHHTSCSSCCCCCCEEEEEETTSC-CEECCHHHHHTTC
T ss_pred Hhc--cCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-EEECCHHHHHhhC
Confidence 984 789999999999999999999998655899999999975 9999999998753
No 10
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=2e-56 Score=372.27 Aligned_cols=218 Identities=32% Similarity=0.521 Sum_probs=206.1
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEF 80 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 80 (225)
|||||||.||+++ |+|+|||+++||||||+|+|.+..++.+++.+||++|++|++|+++|..+|++.+.++++.++..|
T Consensus 16 l~QvEYA~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~ 94 (248)
T 1iru_D 16 LFQVEYAQEAVKK-GSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSH 94 (248)
T ss_dssp CHHHHHHHHHHHT-SCCEEEECCSSEEEEEECCCCCCSSSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHc-CCCEEEEEeCCEEEEEEeecccccCccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHH
Confidence 7999999999996 999999999999999999999966888889999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHh
Q 027320 81 RFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 160 (225)
Q Consensus 81 ~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~ 160 (225)
+++++++++++.+++++++++|.|++++++|||+|++||||||+++||+||.+||+|++.+++++|+|+|++.++++||+
T Consensus 95 ~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~ 174 (248)
T 1iru_D 95 RLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEK 174 (248)
T ss_dssp HHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEESTTHHHHHHHHTT
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEECCCcHHHHHHHHH
Confidence 99999999999999999999999999988999999999999995579999999999999999999999999999999999
Q ss_pred hccCCCCC--CHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHHhhcc
Q 027320 161 KMKNDPAF--TFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISER 224 (225)
Q Consensus 161 ~~~~~~~~--s~eea~~l~~~~l~~~~~~d~~~~~vei~iv~~~~~~~~~~~~~ei~~~l~~~~~~ 224 (225)
.|+ ++| +++||++++++||..+.+ .+..+++|++|+++++ |+.++++||++++.++.++
T Consensus 175 ~~~--~~m~~s~eea~~la~~al~~~~~--~sg~~i~v~vi~~~g~-~~~l~~~ei~~~~~~~~~~ 235 (248)
T 1iru_D 175 NYT--DEAIETDDLTIKLVIKALLEVVQ--SGGKNIELAVMRRDQS-LKILNPEEIEKYVAEIEKE 235 (248)
T ss_dssp TCC--SSTTCSHHHHHHHHHHHHHTTSC--TTSTTCCEEEEESSSC-EECCCHHHHHHHTTTTTTT
T ss_pred hhc--ccccCCHHHHHHHHHHHHHHHHc--CCCCcEEEEEEECCCc-EEECCHHHHHHHHHHHHhc
Confidence 984 789 999999999999999986 4445899999999974 9999999999999988754
No 11
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=6.5e-56 Score=370.33 Aligned_cols=219 Identities=30% Similarity=0.419 Sum_probs=205.1
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEF 80 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 80 (225)
|||||||.||+++ |+|+|||+++||||||+|+|.+..++..++.+||++|++|++|+++|..+|++.+.++++.++..|
T Consensus 20 l~QvEyA~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~ 98 (254)
T 1iru_G 20 VFQVEYAMKAVEN-SSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNF 98 (254)
T ss_dssp CHHHHHHHHHHHT-SCCEEEEECSSBEEEEEEEECSCTTBCTTTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHhHHHHHhc-CCCEEEEEECCEEEEEEecccCCCCcCcCcCCcEEEECCCEEEEEecChHHHHHHHHHHHHHHHHH
Confidence 7999999999996 999999999999999999999966666788999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHh
Q 027320 81 RFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 160 (225)
Q Consensus 81 ~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~ 160 (225)
+++++++++++.+++++++++|.|++++++|||+|++||||||+++||+||++||+|++.+++++|+|+|++.++++||+
T Consensus 99 ~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~ 178 (254)
T 1iru_G 99 RSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEK 178 (254)
T ss_dssp HHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHTT
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEeeeeEEecCccHHHHHHHHH
Confidence 99999999999999999999999999988999999999999995579999999999999999999999999999999999
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCC-cEEEcCHHHHHHHHHHhh
Q 027320 161 KMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENP-EFRVLSIEEIDEHLTAIS 222 (225)
Q Consensus 161 ~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~-~~~~~~~~ei~~~l~~~~ 222 (225)
.|+ ++|+++||++++++||+.+.+++..++ +++|++|+++.+ +|+.++++++++++.++.
T Consensus 179 ~~~--~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~l~~~~i~~~~~~~~ 240 (254)
T 1iru_G 179 LQM--KEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYAK 240 (254)
T ss_dssp SCG--GGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECCHHHHHHHHHHHH
T ss_pred hcc--CCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEECCHHHHHHHHHHHH
Confidence 984 689999999999999999988776444 799999998732 499999999999998764
No 12
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=1.5e-55 Score=367.43 Aligned_cols=218 Identities=33% Similarity=0.536 Sum_probs=206.2
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHH-
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAE- 79 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~- 79 (225)
|||||||.||+++ |+|+|||+++||||||+|+|.+++++.+++.+||++|++|++|++||..+|++.+.++++.+++.
T Consensus 18 l~QvEyA~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~ 96 (250)
T 1ryp_B 18 LGQIDYALTAVKQ-GVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTS 96 (250)
T ss_dssp BHHHHHHHHHHHT-SCCEEEEEETTEEEEEEECCCSCSSBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHhHHHHHHc-CCcEEEEEECCEEEEEEeccCCCccccCcccCceEEECCCEEEEeeeCHHHHHHHHHHHHHHHHHH
Confidence 6999999999996 99999999999999999999999999889999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHH
Q 027320 80 FRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLE 159 (225)
Q Consensus 80 ~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le 159 (225)
|+..++.+++++.+++.+++++|.|++++++|||++++||||||+++||+||.+||+|++.+++++|+|+|++.++++||
T Consensus 97 ~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le 176 (250)
T 1ryp_B 97 YKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLE 176 (250)
T ss_dssp THHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeeceeEecCccHHHHHHHH
Confidence 99999999999999999999999999988899999999999999767899999999999999999999999999999999
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCC--------------CcEEEcCHHHHHHHHHHh
Q 027320 160 KKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKEN--------------PEFRVLSIEEIDEHLTAI 221 (225)
Q Consensus 160 ~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~vei~iv~~~~--------------~~~~~~~~~ei~~~l~~~ 221 (225)
+.| +++|++|||++++++||..+.+++++..+++|++|++++ +.|++++++||++++.++
T Consensus 177 ~~~--~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~ei~~~l~~~ 250 (250)
T 1ryp_B 177 KRW--NDELELEDAIHIALLTLKESVEGEFNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLTSQEINDRLEAL 250 (250)
T ss_dssp HHC--CTTCCHHHHHHHHHHHHHHHCCSCCSTTTEEEEEECSCCGGGTSEESCSSCCCCSEEECCHHHHHHHHTTC
T ss_pred HHh--ccCCCHHHHHHHHHHHHHHHhccccCCCCEEEEEEEccccccccccccccCCCCCeEECCHHHHHHHHHhC
Confidence 998 478999999999999999999887765689999999862 359999999999998754
No 13
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=2.3e-55 Score=365.41 Aligned_cols=217 Identities=31% Similarity=0.541 Sum_probs=204.7
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEF 80 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 80 (225)
|||||||.||+++ |+|+|||+++||||||+|+|.+++++.+++.+||++|++|++|+++|..+|++.+.++++.++..|
T Consensus 21 l~QvEya~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~ 99 (246)
T 1j2p_A 21 LFQVEYAREAVKR-GATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQIN 99 (246)
T ss_dssp CHHHHHHHHHHHT-SCCEEEEEETTEEEEEEECCCSCTTBCGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred ehHHHhHHHHHHc-CCcEEEEEECCEEEEEEeccCCccccccCccCcEEEECCCEEEEEeEccHHHHHHHHHHHHHHHHH
Confidence 7999999999996 999999999999999999999977888889999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHh
Q 027320 81 RFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 160 (225)
Q Consensus 81 ~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~ 160 (225)
+++++++++++.+++++++.+|.|+++++.|||++++|||||| +||+||.+||+|++.+++++|+|+|++.++++||+
T Consensus 100 ~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~ 177 (246)
T 1j2p_A 100 RLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN--EVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEK 177 (246)
T ss_dssp HHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES--SSEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC--CCCEEEEECCCceEEeeeEEEECCCcHHHHHHHHH
Confidence 9999999999999999999999999998999999999999999 68999999999999999999999999999999999
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEE-cCCCcEEEcCHHHHHHHHHHhhc
Q 027320 161 KMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVS-KENPEFRVLSIEEIDEHLTAISE 223 (225)
Q Consensus 161 ~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~vei~iv~-~~~~~~~~~~~~ei~~~l~~~~~ 223 (225)
.| +++|+++||++++++||..+.++..+..+++|++|+ +++ +|+.++++||++++.++.+
T Consensus 178 ~~--~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~-~~~~l~~~ei~~~~~~~~~ 238 (246)
T 1j2p_A 178 EY--RDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDR-TFKEVSPEELKPYVERANE 238 (246)
T ss_dssp HC--CTTCCHHHHHHHHHHHHHHHHTSCCCGGGEEEEEEETTTC-CCEECCHHHHHHHHHHHHH
T ss_pred Hh--ccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCC-ceEECCHHHHHHHHHHHHH
Confidence 98 478999999999999999999884343489999999 654 5999999999999988763
No 14
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=8.5e-56 Score=371.24 Aligned_cols=217 Identities=28% Similarity=0.517 Sum_probs=204.6
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEF 80 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 80 (225)
|||||||.||+++ |+|+|||+++||||||+|+|.+..+. ++.+||++|++|++|++||..+|++.+.++++.++..|
T Consensus 19 l~QvEYA~~av~~-Gtt~vgi~~~dgVVlaaD~r~~~gl~--~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~ 95 (263)
T 1iru_F 19 IHQIEYAMEAVKQ-GSATVGLKSKTHAVLVALKRAQSELA--AHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDS 95 (263)
T ss_dssp CHHHHHHHHHHHH-SCCEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHc-CCcEEEEEeCCEEEEEEecccccccc--cchhcEEEEcCCEEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 7999999999996 99999999999999999999996664 47899999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHh
Q 027320 81 RFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 160 (225)
Q Consensus 81 ~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~ 160 (225)
+++++++++++.+++++++++|.||++++.|||+|++||||||+ +||+||++||+|++.+++++|+|+|++.++++||+
T Consensus 96 ~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~ 174 (263)
T 1iru_F 96 RFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD-MGPHIFQTCPSANYFDCRAMSIGARSQSARTYLER 174 (263)
T ss_dssp HHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECSSSCEEEESEEEESTTHHHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcC-CCCEEEEECCCCCEEEeeEEEcCcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999997 78999999999999999999999999999999999
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHhhhcc--CCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHHhh
Q 027320 161 KMKNDPAFTFQETVQTAISTLQSVLQED--FKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 222 (225)
Q Consensus 161 ~~~~~~~~s~eea~~l~~~~l~~~~~~d--~~~~~vei~iv~~~~~~~~~~~~~ei~~~l~~~~ 222 (225)
.|++.++|+++||++++++||..+.++| .+..+++|++|++++ +|+.++++||++++.++.
T Consensus 175 ~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~-~~~~l~~~ei~~~~~~~~ 237 (263)
T 1iru_F 175 HMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDL-EFTIYDDDDVSPFLEGLE 237 (263)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTE-EEEEECSGGGHHHHTTCC
T ss_pred HhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCC-CeEECCHHHHHHHHHHHh
Confidence 9964348999999999999999999998 444589999999986 499999999999998875
No 15
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=1.5e-55 Score=365.61 Aligned_cols=216 Identities=28% Similarity=0.553 Sum_probs=203.9
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEF 80 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 80 (225)
|||||||.||+++ |+|+|||+++||||||+|+|.+..+..+++.+||++|++|++|++||..+|++.+.++++.++..|
T Consensus 21 l~QvEya~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~ 99 (241)
T 1iru_E 21 LFQVEYDIEAIKL-GSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNH 99 (241)
T ss_dssp BHHHHHHHHHHTT-SCCEEEEEETTEEEEEEECCCCCTTBCTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHc-CCcEEEEEcCCEEEEEEecccCCcCcCccccceEEEEcCCEEEEEeeChHHHHHHHHHHHHHHHHH
Confidence 6999999999996 999999999999999999999966666889999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHhhhccC-----cccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHH
Q 027320 81 RFKYGYEMPVDVLAKWIADKSQVYTQHAY-----MRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAI 155 (225)
Q Consensus 81 ~~~~~~~~~~~~la~~ls~~~~~~t~~~~-----~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~ 155 (225)
+++++++++++.+++++++++|.|+++.+ .|||++++||||||. +||+||.+||+|++.+++++|+|+|++.++
T Consensus 100 ~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~ 178 (241)
T 1iru_E 100 WFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDE-KGPQLFHMDPSGTFVQCDARAIGSASEGAQ 178 (241)
T ss_dssp HHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeC-CCCEEEEECCCCcEEecceEEECCCcHHHH
Confidence 99999999999999999999999998877 899999999999994 899999999999999999999999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHHh
Q 027320 156 NFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 221 (225)
Q Consensus 156 ~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~vei~iv~~~~~~~~~~~~~ei~~~l~~~ 221 (225)
++||+.| +++|++|||++++++||..+.+++.+..+++|++|++++. |+.++++||++++.++
T Consensus 179 ~~Le~~~--~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~-~~~l~~~ei~~~~~~~ 241 (241)
T 1iru_E 179 SSLQELY--HKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQN-FHMFTKEELEEVIKDI 241 (241)
T ss_dssp HHHHHHC--CTTCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEECSSSC-CEECCHHHHHHHHTTC
T ss_pred HHHHHHh--ccCCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCCC-eEECCHHHHHHHHHhC
Confidence 9999998 4789999999999999999999855545899999999986 9999999999998754
No 16
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=9.4e-56 Score=365.07 Aligned_cols=212 Identities=23% Similarity=0.422 Sum_probs=198.2
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEF 80 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 80 (225)
|||||||.||+++ |+|+|||+++||||||+|+|.+..+. ++.+||++|++|++|++||..+|++.+.++++.+++.|
T Consensus 18 l~QvEyA~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~~l~--~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~ 94 (233)
T 1ryp_F 18 LFQVEYALEAIKQ-GSVTVGLRSNTHAVLVALKRNADELS--SYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYS 94 (233)
T ss_dssp CHHHHHHHHHHHT-SCCEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHc-CCCEEEEEcCCEEEEEEEeccccccc--cccCcEEEEcCCEEEEEEechHHHHHHHHHHHHHHHHH
Confidence 7999999999996 99999999999999999999996665 47899999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHh
Q 027320 81 RFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 160 (225)
Q Consensus 81 ~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~ 160 (225)
+++++++++++.+++++++++|.|||+.+.|||+|++||||||+ .||+||++||+|++.+++++|+|+|++.++++||+
T Consensus 95 ~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~ 173 (233)
T 1ryp_F 95 SLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDK-SGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLER 173 (233)
T ss_dssp HHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECTTSCEEEESEEEESTTHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeC-CcCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999997 78999999999999999999999999999999999
Q ss_pred hccCCCCC--CHHHHHHHHHHHHHHhhhcc-C-CCCcEEEEEEEcCCCcEEEcCHHHHHHHH
Q 027320 161 KMKNDPAF--TFQETVQTAISTLQSVLQED-F-KASEIEVGVVSKENPEFRVLSIEEIDEHL 218 (225)
Q Consensus 161 ~~~~~~~~--s~eea~~l~~~~l~~~~~~d-~-~~~~vei~iv~~~~~~~~~~~~~ei~~~l 218 (225)
.|++.++| ++|||++++++||..++ +| . +..+++|++|+++++ |+.++++||+++|
T Consensus 174 ~~~~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~~-~~~l~~~ei~~~l 233 (233)
T 1ryp_F 174 TLDTFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTP-FTIYDGEAVAKYI 233 (233)
T ss_dssp HHHHHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTEE-EEEEEGGGGGGGC
T ss_pred HhccccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCCC-EEECCHHHHHhhC
Confidence 99643389 99999999999999999 66 3 445899999999864 9999999998753
No 17
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=1.2e-54 Score=367.50 Aligned_cols=215 Identities=27% Similarity=0.429 Sum_probs=196.7
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEF 80 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 80 (225)
|||||||+|||++ |+|+|||+++||||||+|+|.+..++..+..+|||+|++|++|+++|+.+|++.+.++++.++..|
T Consensus 21 l~QvEYA~kAv~~-GtT~Vgik~kdGVVlAaD~r~t~gl~~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y 99 (288)
T 3nzj_F 21 NFQVEYAVKAVEN-GTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASF 99 (288)
T ss_dssp CHHHHHHHHHHHT-SCCEEEEEETTEEEEEEEEEECCTTBCTTCSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhc-CCcEEEEEECCEEEEEEcCCcccCCccccccceEEEEcCCEEEEecCcHHHHHHHHHHHHHHHHHH
Confidence 7999999999995 999999999999999999999966766678899999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHh
Q 027320 81 RFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 160 (225)
Q Consensus 81 ~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~ 160 (225)
+++++++++++.++++|++++|.||+++++|||+|++||||||+ .||+||++||+|++.+++++|+|+|++.++++||+
T Consensus 100 ~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Lek 178 (288)
T 3nzj_F 100 KKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEK 178 (288)
T ss_dssp HHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHH
T ss_pred HHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 78999999999999999999999999999999999
Q ss_pred hcc-CCCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEc-C-CCcEEEcCHHHHHHH
Q 027320 161 KMK-NDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSK-E-NPEFRVLSIEEIDEH 217 (225)
Q Consensus 161 ~~~-~~~~~s~eea~~l~~~~l~~~~~~d~~~~-~vei~iv~~-~-~~~~~~~~~~ei~~~ 217 (225)
.++ ++++|+++||++++++||..+++++..++ .++|+||++ + ++.++.++.+++++.
T Consensus 179 ~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~~~~~vp~~~~~~~ 239 (288)
T 3nzj_F 179 LVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEA 239 (288)
T ss_dssp HHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTTCCEECCHHHHHHH
T ss_pred hccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCceEEECCHHHHHHH
Confidence 932 26899999999999999999999876554 799999999 4 434555666555543
No 18
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=4.9e-54 Score=357.02 Aligned_cols=218 Identities=26% Similarity=0.409 Sum_probs=200.8
Q ss_pred CchhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHH
Q 027320 1 MILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEF 80 (225)
Q Consensus 1 l~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 80 (225)
|||||||.||+++ |+|+|||+++||||||+|++.+..++..+..+||++|++|++|++||..+|++.+.++++.++..|
T Consensus 17 l~QvEya~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~ 95 (244)
T 1ryp_G 17 NFQVEYAVKAVEN-GTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASF 95 (244)
T ss_dssp CHHHHHHHHHHHT-SCCEEEEEETTEEEEEEEEECCCTTBCTTTSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHC-CCCEEEEEECCEEEEEEecccCCCCccccccCceEEecCCEEEEEcccHHHHHHHHHHHHHHHHHH
Confidence 7999999999996 999999999999999999999966666666799999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHh
Q 027320 81 RFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 160 (225)
Q Consensus 81 ~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~ 160 (225)
+++++++++++.++++|++++|.||+++++|||++++||||||+ +||+||++||+|++.+++++|+|+|++.++++||+
T Consensus 96 ~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~ 174 (244)
T 1ryp_G 96 KKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEK 174 (244)
T ss_dssp HHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeC-CcCEEEEECCCCCEEEeeEEEECCChHHHHHHHHH
Confidence 99999999999999999999999999988999999999999996 79999999999999999999999999999999999
Q ss_pred h---ccCCCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEc-CCCcEEEcCHHHHHHHHHHhh
Q 027320 161 K---MKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSK-ENPEFRVLSIEEIDEHLTAIS 222 (225)
Q Consensus 161 ~---~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~-~vei~iv~~-~~~~~~~~~~~ei~~~l~~~~ 222 (225)
. | +++||++||++++++||..+.++|..++ +++|++|++ +..+++.+.++++-+..++..
T Consensus 175 ~~~~~--~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~~~~~~~~~~~~~~~~ 239 (244)
T 1ryp_G 175 LVDHH--PEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAIDFA 239 (244)
T ss_dssp HHHHC--TTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEEECCTHHHHHHHHHH
T ss_pred hHhhc--CCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCeeeeChHHHHHHHHHHH
Confidence 7 7 4789999999999999999999988765 799999997 222478888888776666543
No 19
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=1.9e-52 Score=347.45 Aligned_cols=208 Identities=16% Similarity=0.216 Sum_probs=188.0
Q ss_pred hhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHH
Q 027320 3 LIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRF 82 (225)
Q Consensus 3 QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~ 82 (225)
++|||.||+++ |+|+|||+++||||||+|+| +++.+|||+|++|++|+++|+.+|++.+.+.++.+++.|++
T Consensus 16 r~EYA~~av~~-GtT~vgi~~kdgVVlaadkr-------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~ 87 (248)
T 3mi0_A 16 RSELARKGIAR-AKSVVALAYAGGVLFVAENP-------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGY 87 (248)
T ss_dssp HHHHHHHHHHT-SCCEEEEEETTEEEEEEECC-------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHhC-CCcEEEEEeCCEEEEEEeCC-------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHH
Confidence 68999999996 99999999999999999999 36889999999999999999999999999999999999999
Q ss_pred HcC-CCCCHHHHHHHHH-HHHHHhhhccCcccccceeEEEEEeC---CCCcEEEEECCCCceec-ceEEeccCChHHHHH
Q 027320 83 KYG-YEMPVDVLAKWIA-DKSQVYTQHAYMRPLGVVAMVLSIDE---ECGPRLFKCDPAGHFFG-HKATSAGLKEQEAIN 156 (225)
Q Consensus 83 ~~~-~~~~~~~la~~ls-~~~~~~t~~~~~rP~~v~~ll~G~d~---~~gp~Ly~id~~G~~~~-~~~~aiG~gs~~~~~ 156 (225)
.++ ++++++.|+++|+ .+.|.||+ ++|||+|++||||||+ ++||+||++||+|++.+ ++++|+|+|++.+++
T Consensus 88 ~~~~~~i~v~~la~~l~~~l~q~yt~--~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~ 165 (248)
T 3mi0_A 88 AYDRRDVTGRQLANVYAQTLGTIFTE--QAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIAN 165 (248)
T ss_dssp HSCGGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHH
Confidence 999 9999999999999 77888987 6899999999999997 47999999999999995 999999999999999
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHhh-------hccCCCCcEEEEEEEcCC--CcEEEcCHHHHHHHHHHhh
Q 027320 157 FLEKKMKNDPAFTFQETVQTAISTLQSVL-------QEDFKASEIEVGVVSKEN--PEFRVLSIEEIDEHLTAIS 222 (225)
Q Consensus 157 ~Le~~~~~~~~~s~eea~~l~~~~l~~~~-------~~d~~~~~vei~iv~~~~--~~~~~~~~~ei~~~l~~~~ 222 (225)
+||++| +++|+++||++++++||+.+. +++++..+++|++|++++ +.|++++++||+++|.++.
T Consensus 166 ~Le~~y--~~~mt~eeai~la~~aL~~~~~~~~~~~~~~~~~~~iev~vv~~~g~~~~f~~l~~~ei~~~l~~~~ 238 (248)
T 3mi0_A 166 ALKESY--AENASLTDALRIAVAALRAGSADTSGGDQPTLGVASLEVAVLDANRPRRAFRRITGSALQALLVDQE 238 (248)
T ss_dssp HHHHHC--CTTCCHHHHHHHHHHHHHHC------------CCTTEEEEEEETTSSSCCEEECCHHHHHHTC----
T ss_pred HHHhhc--CCCCCHHHHHHHHHHHHHHHHhhcccCcccccCCCcEEEEEEECCCCcccEEECCHHHHHHHHHHcC
Confidence 999998 478999999999999999999 677777899999999985 4699999999999998764
No 20
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=2.2e-51 Score=343.68 Aligned_cols=210 Identities=17% Similarity=0.235 Sum_probs=190.1
Q ss_pred chhhHHHHHHhccCCeEEEEEcCCEEEEEEeccCCCCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHH
Q 027320 2 ILIEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFR 81 (225)
Q Consensus 2 ~QvEya~kav~~~G~t~vgi~~~dgvvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 81 (225)
.|||||.||+++ |+|+|||+++||||||+|+| +++.+|||+|++|++|+++|..+|++.+.++++.+++.|+
T Consensus 15 ~qvEYA~~av~~-Gtt~vgi~~~dgVVlaaD~r-------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 86 (259)
T 1q5q_A 15 DRSELARKGIAR-GRSVVVLTFRDGVLFVAENP-------STALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRG 86 (259)
T ss_dssp HHHHHHHHHHHT-SCCEEEEECSSEEEEEECCS-------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-CCcEEEEEeCCEEEEEEecC-------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHHHHHHHHHH
Confidence 499999999996 99999999999999999999 3678999999999999999999999999999999999999
Q ss_pred HHcC-CCCCHHHHHHHHHH-HHHHhhhccCcccccceeEEEEEe--C-CCCcEEEEECCCCcee-cceEEeccCChHHHH
Q 027320 82 FKYG-YEMPVDVLAKWIAD-KSQVYTQHAYMRPLGVVAMVLSID--E-ECGPRLFKCDPAGHFF-GHKATSAGLKEQEAI 155 (225)
Q Consensus 82 ~~~~-~~~~~~~la~~ls~-~~~~~t~~~~~rP~~v~~ll~G~d--~-~~gp~Ly~id~~G~~~-~~~~~aiG~gs~~~~ 155 (225)
+.++ ++++++.++++|++ +.|.|+ .++|||+|++|||||| + ++||+||++||+|++. +++++|+|++++.++
T Consensus 87 ~~~~~~~i~v~~la~~l~~~l~q~yt--~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~ 164 (259)
T 1q5q_A 87 YSYDRRDVTGRSLANAYAQTLGTIFT--EQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIA 164 (259)
T ss_dssp HHSCGGGCCHHHHHHHHHHHHHHHHH--HSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHH
T ss_pred HHcCCcCCCHHHHHHHHHHHHHHHhc--cCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEEECCChHHHH
Confidence 9988 49999999999999 777787 3689999999999999 3 4799999999999999 889999999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHhh-----hccCCCCcEEEEEEEcCC--CcEEEcCHHHHHHHHHHhhc
Q 027320 156 NFLEKKMKNDPAFTFQETVQTAISTLQSVL-----QEDFKASEIEVGVVSKEN--PEFRVLSIEEIDEHLTAISE 223 (225)
Q Consensus 156 ~~Le~~~~~~~~~s~eea~~l~~~~l~~~~-----~~d~~~~~vei~iv~~~~--~~~~~~~~~ei~~~l~~~~~ 223 (225)
++||+.| +++|+++||++++++||..+. ++|++..+++|++|++++ ++|+.++++||++++.++.+
T Consensus 165 ~~Le~~~--~~~ms~eea~~la~~al~~~~~~~~~~rd~sg~~iev~vi~~~~~~~~~~~l~~~ei~~~~~~~~~ 237 (259)
T 1q5q_A 165 TAMRESY--RADLDLEAAVGIAVNALRQGGAGEGEKRNVDVASLEVAVLDQSRPRRAFRRIAGTALEQLVPAEPA 237 (259)
T ss_dssp HHHHHHC--CTTCCHHHHHHHHHHHHTTCC--------CCSSCSEEEEEETTSSSCCEEECCHHHHHTTSCCC--
T ss_pred HHHHhhc--cCCCCHHHHHHHHHHHHHHHhhcccccccCCCCcEEEEEEECCCCcCCeEECCHHHHHHHHHHhhh
Confidence 9999998 478999999999999999999 889844589999999985 24999999999999887764
No 21
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=3.6e-50 Score=328.73 Aligned_cols=201 Identities=23% Similarity=0.376 Sum_probs=189.5
Q ss_pred CCeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q 027320 15 GVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVL 93 (225)
Q Consensus 15 G~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 93 (225)
|+|+|||+++||||||+|+|.+ +.++.+++.+|||+|++|++|+++|..+|++.+.++++.+++.|+++++++++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 7899999999999999999998 678888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecce-EEeccCChHHHHHHHHhhccCCCCCCHHH
Q 027320 94 AKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHK-ATSAGLKEQEAINFLEKKMKNDPAFTFQE 172 (225)
Q Consensus 94 a~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~-~~aiG~gs~~~~~~Le~~~~~~~~~s~ee 172 (225)
+++|+++++.| ++|||+|++||||||+++||+||++||+|++.+++ ++|+|+|++.++++||+.| +++|+++|
T Consensus 81 a~~l~~~~~~~----~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~--~~~ms~ee 154 (219)
T 3h4p_a 81 ATLLSNILHSS----RMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGY--DRDMSVEE 154 (219)
T ss_dssp HHHHHHHHHHT----TTTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSC--CTTCCHHH
T ss_pred HHHHHHHHHHh----cCCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhc--CCCCCHHH
Confidence 99999999765 36899999999999976789999999999999999 9999999999999999998 47899999
Q ss_pred HHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHHHHHhhc
Q 027320 173 TVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLTAISE 223 (225)
Q Consensus 173 a~~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~~~~~~~~~ei~~~l~~~~~ 223 (225)
|++++++||..+.++|..++ +++|++|++++ |+.++++||+++|.++++
T Consensus 155 a~~la~~al~~~~~rd~~sg~~i~v~vi~~~g--~~~l~~~ei~~~l~~~~~ 204 (219)
T 3h4p_a 155 GIKLALNALKSAMERDTFSGNGISLAVITKDG--VKIFEDEEIEKILDSMKA 204 (219)
T ss_dssp HHHHHHHHHHHHHTSCSSCCSCCCEEEEETTE--EEECCHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCC--eEEcCHHHHHHHHHHhhc
Confidence 99999999999999998775 79999999984 999999999999999874
No 22
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=5.9e-49 Score=321.13 Aligned_cols=204 Identities=24% Similarity=0.425 Sum_probs=187.1
Q ss_pred HHHhccCCeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCC
Q 027320 9 KAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYE 87 (225)
Q Consensus 9 kav~~~G~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 87 (225)
.++++ |+|+|||+++||||||+|+|.+ ++++.+++.+||++|+++++|++||..+|++.+.++++.+++.|+++++++
T Consensus 3 ~~~~~-Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (217)
T 1yar_H 3 QTLET-GTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVN 81 (217)
T ss_dssp -------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCC-CccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 45664 9999999999999999999999 789999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHhhccCCCC
Q 027320 88 MPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPA 167 (225)
Q Consensus 88 ~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~ 167 (225)
++++.+++++++.++.+ +.|||++++|+|||| +||+||++||+|++.+++++|+|+|++.++++||+.| +++
T Consensus 82 ~~v~~la~~l~~~~~~~----r~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~ 153 (217)
T 1yar_H 82 MPIEAVATLLSNMLNQV----KYMPYMVQLLVGGID--TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQY--SEK 153 (217)
T ss_dssp CCHHHHHHHHHHHHHHT----TTSCCCEEEEEEEES--SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHC--CTT
T ss_pred CCHHHHHHHHHHHHHhc----CCCCceEEEEEEEEC--CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhc--ccC
Confidence 99999999999999753 378999999999999 5899999999999999999999999999999999998 478
Q ss_pred CCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHHHHHhh
Q 027320 168 FTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLTAIS 222 (225)
Q Consensus 168 ~s~eea~~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~~~~~~~~~ei~~~l~~~~ 222 (225)
||+|||++++++||..+.++|..++ +++|++|+++. +|+.++++||++++.++.
T Consensus 154 ~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~-g~~~~~~~ei~~~~~~~~ 208 (217)
T 1yar_H 154 MTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKD-GYVQLPTDQIESRIRKLG 208 (217)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTT-EEEECCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCC-CEEEcCHHHHHHHHHHHH
Confidence 9999999999999999999997654 79999999943 499999999999998875
No 23
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=1.2e-48 Score=315.89 Aligned_cols=198 Identities=22% Similarity=0.371 Sum_probs=187.3
Q ss_pred CeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 027320 16 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 94 (225)
Q Consensus 16 ~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 94 (225)
||+|||+++||||||+|+|.+ ++++.+++.+||++|++|++|++||..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 589999999999999999999 7899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecce-EEeccCChHHHHHHHHhhccCCCCCCHHHH
Q 027320 95 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHK-ATSAGLKEQEAINFLEKKMKNDPAFTFQET 173 (225)
Q Consensus 95 ~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~-~~aiG~gs~~~~~~Le~~~~~~~~~s~eea 173 (225)
+++++.++.+ +.|||++++|+||||+ +||+||.+||+|++.+++ ++|+|+|++.++++||+.| +++||++||
T Consensus 81 ~~l~~~~~~~----r~rp~~~~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~--~~~~s~eea 153 (202)
T 1j2q_H 81 TLTSNLLNSY----RYFPYLVQLLIGGIDS-EGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRF--TPEIGVDEA 153 (202)
T ss_dssp HHHHHHHHHT----TTSCCCEEEEEEEEET-TEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHC--CTTCCHHHH
T ss_pred HHHHHHHHhh----CCCCceEEEEEEEEeC-CCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhc--CCCcCHHHH
Confidence 9999999753 3789999999999997 789999999999999999 9999999999999999998 478999999
Q ss_pred HHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHHHHHhh
Q 027320 174 VQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLTAIS 222 (225)
Q Consensus 174 ~~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~~~~~~~~~ei~~~l~~~~ 222 (225)
++++++||..+.++|..++ +++|++|++++ |+.++++||++++.+++
T Consensus 154 ~~la~~al~~~~~~d~~s~~~i~v~vi~~~g--~~~l~~~ei~~~~~~~~ 201 (202)
T 1j2q_H 154 VELAVRAIYSAMKRDSASGDGIDVVKITEDE--FYQYSPEEVEQILAKFR 201 (202)
T ss_dssp HHHHHHHHHHHHTTCTTSCSCEEEEEECSSC--EEECHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEEeCCC--eEEeCHHHHHHHHHHhh
Confidence 9999999999999997654 79999999984 99999999999998874
No 24
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=1.1e-48 Score=331.97 Aligned_cols=211 Identities=18% Similarity=0.184 Sum_probs=196.9
Q ss_pred HHHHHhccCCeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcC
Q 027320 7 AFKAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYG 85 (225)
Q Consensus 7 a~kav~~~G~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~ 85 (225)
|.||+++ |+|+|||+++||||||+|++.+ ++++.+++.+|||+|++|++|+++|..+|++.+.++++.+++.|+++++
T Consensus 58 a~~Av~~-GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g 136 (294)
T 1q5r_H 58 SGDLAPH-GTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEG 136 (294)
T ss_dssp --CCSCB-CCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhc-CceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhC
Confidence 7888985 9999999999999999999999 7999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCC-----cEEEEECCCCceecc--eEEeccCChHHHHHHH
Q 027320 86 YEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECG-----PRLFKCDPAGHFFGH--KATSAGLKEQEAINFL 158 (225)
Q Consensus 86 ~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~g-----p~Ly~id~~G~~~~~--~~~aiG~gs~~~~~~L 158 (225)
++++++.++++|++++|.|+++. +|||+|++||||||++++ |+||++||+|++.++ +++|+|+|+++++++|
T Consensus 137 ~~isv~~la~~la~~l~~~~~~~-~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~L 215 (294)
T 1q5r_H 137 VPLTFDGKANRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSAL 215 (294)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHH-TTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhhh-cCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHH
Confidence 99999999999999999988754 899999999999998546 999999999999999 8999999999999999
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCc---E-----EEEEEEcCCCcEEEcCHHHHHHHHHHhhc
Q 027320 159 EKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASE---I-----EVGVVSKENPEFRVLSIEEIDEHLTAISE 223 (225)
Q Consensus 159 e~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~---v-----ei~iv~~~~~~~~~~~~~ei~~~l~~~~~ 223 (225)
|+.| +++|+++||++++++||..+.++|+.+++ + +|++|++++ |+.++++||++++.++.+
T Consensus 216 e~~y--~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g--~~~l~~~ei~~~l~~i~~ 284 (294)
T 1q5r_H 216 KKIY--SPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAG--AVHVSEETTSELARRIVA 284 (294)
T ss_dssp HHHC--CSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTE--EEECCHHHHHHHHHHHCC
T ss_pred HHhc--cCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCC--EEEcCHHHHHHHHHHHHH
Confidence 9998 47899999999999999999999987653 5 999999874 999999999999998864
No 25
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=1.4e-48 Score=330.92 Aligned_cols=213 Identities=14% Similarity=0.122 Sum_probs=175.5
Q ss_pred hhHHHHHHhccCCeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHH
Q 027320 4 IEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRF 82 (225)
Q Consensus 4 vEya~kav~~~G~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~ 82 (225)
+|||.+ +++ |+|+|||+++||||||+|+|.+ +.++.+++.+|||+|++|++|++||..+|++.+.++++.+++.|++
T Consensus 48 ~~ya~~-v~~-GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~ 125 (291)
T 2jay_A 48 AGGDAQ-LPH-GTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEK 125 (291)
T ss_dssp ------------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccc-ccC-CcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhh
Confidence 689999 875 9999999999999999999999 6688888999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCC-----cEEEEECCCCcee--cceEEeccCChHHHH
Q 027320 83 KYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECG-----PRLFKCDPAGHFF--GHKATSAGLKEQEAI 155 (225)
Q Consensus 83 ~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~g-----p~Ly~id~~G~~~--~~~~~aiG~gs~~~~ 155 (225)
.++++++++.+++.++++++.|++ ..+|||+|++||||||++++ |+||++||+|++. +++++|+|+|+++++
T Consensus 126 ~~~~~i~v~~la~~la~~l~~~~~-~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~ 204 (291)
T 2jay_A 126 LEGVPLTFAGKINRLAIMVRGNLA-AAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAK 204 (291)
T ss_dssp HHSSCCCHHHHHHHHHHHHHTCHH-HHHHTCCCEEEEEEECTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHHhhh-hhccccceeEEEEEEeCCCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHH
Confidence 999999999999999999998865 46799999999999997555 9999999999999 889999999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcE--------EEEEEEcCCCcEEEcCHHHHHHHHHHhhc
Q 027320 156 NFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEI--------EVGVVSKENPEFRVLSIEEIDEHLTAISE 223 (225)
Q Consensus 156 ~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~v--------ei~iv~~~~~~~~~~~~~ei~~~l~~~~~ 223 (225)
++||+.|+ ++|+++||++++++||+.+.++|+.++++ +|++|++++ |+.++++||++++.++.+
T Consensus 205 ~~Le~~~~--~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~dg--~~~l~~~ei~~~~~~~~~ 276 (291)
T 2jay_A 205 SSMKKLYS--QVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADG--AVDVPESRIAELARAIIE 276 (291)
T ss_dssp HHHHHHGG--GCCSHHHHHHHHHHHHHHC----------------CCEEEEEETTE--EEECCHHHHHHHHHHC--
T ss_pred HHHHHhcC--CCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEECCC--eEEcCHHHHHHHHHHHHH
Confidence 99999995 78999999999999999999999988876 599999984 999999999999998864
No 26
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=8.3e-49 Score=331.62 Aligned_cols=209 Identities=12% Similarity=0.177 Sum_probs=190.3
Q ss_pred HHHHHHhccCCeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHc
Q 027320 6 YAFKAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKY 84 (225)
Q Consensus 6 ya~kav~~~G~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~ 84 (225)
++.+++++ |+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++++
T Consensus 67 ~~~~~v~~-GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~ 145 (287)
T 3nzj_K 67 DCKIKIAH-GTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELRE 145 (287)
T ss_dssp ----------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhecc-CceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 67889985 9999999999999999999999 799999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHhhccC
Q 027320 85 GYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKN 164 (225)
Q Consensus 85 ~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~~~ 164 (225)
+++++++.++++++++++.|++ +||++++||||||+++||+||++||+|++.+++++|+|+|++.++++||+.|
T Consensus 146 ~~~isv~~la~~ls~~l~~~r~----~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y-- 219 (287)
T 3nzj_K 146 KERISVAAASKILSNLVYQYKG----AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNY-- 219 (287)
T ss_dssp SSCCCHHHHHHHHHHHHHHTTT----SCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSC--
T ss_pred CCCCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhh--
Confidence 9999999999999999987754 4999999999999668999999999999999999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHHHHHhhc
Q 027320 165 DPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLTAISE 223 (225)
Q Consensus 165 ~~~~s~eea~~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~~~~~~~~~ei~~~l~~~~~ 223 (225)
+++|+++||++++++||..+.+||..++ +++|++|+++| |++++++||++++.++.+
T Consensus 220 ~~dms~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkdg--~~~l~~~ev~~~l~~~~e 277 (287)
T 3nzj_K 220 KWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDG--WIYHGNHDVGELFWKVKE 277 (287)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTE--EEEEEEEEHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCCC--EEEeCHHHHHHHHHHHHH
Confidence 4789999999999999999999998876 79999999995 999999999999988774
No 27
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=4.9e-48 Score=319.28 Aligned_cols=203 Identities=18% Similarity=0.193 Sum_probs=191.1
Q ss_pred CeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 027320 16 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 94 (225)
Q Consensus 16 ~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 94 (225)
||+|||+++||||||+|+|.+ |+++.+++.+||++|+++++|++||..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 589999999999999999999 7999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCcccccceeEEEEEeCCCC-----cEEEEECCCCceecc--eEEeccCChHHHHHHHHhhccCCCC
Q 027320 95 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECG-----PRLFKCDPAGHFFGH--KATSAGLKEQEAINFLEKKMKNDPA 167 (225)
Q Consensus 95 ~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~g-----p~Ly~id~~G~~~~~--~~~aiG~gs~~~~~~Le~~~~~~~~ 167 (225)
+.|+++++.|+++. +|||+|++||||||+++| |+||++||+|++.++ +++|+|+|++.++++||+.| +++
T Consensus 81 ~~l~~~~~~~~~~~-~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~--~~~ 157 (235)
T 1q5q_H 81 NRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIY--SPD 157 (235)
T ss_dssp HHHHHHHHTTHHHH-TTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHC--CTT
T ss_pred HHHHHHHHHHHHhh-hcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhc--CCC
Confidence 99999999988764 899999999999998557 999999999999999 99999999999999999998 478
Q ss_pred CCHHHHHHHHHHHHHHhhhccCCCCc---E-----EEEEEEcCCCcEEEcCHHHHHHHHHHhhc
Q 027320 168 FTFQETVQTAISTLQSVLQEDFKASE---I-----EVGVVSKENPEFRVLSIEEIDEHLTAISE 223 (225)
Q Consensus 168 ~s~eea~~l~~~~l~~~~~~d~~~~~---v-----ei~iv~~~~~~~~~~~~~ei~~~l~~~~~ 223 (225)
||++||++++++||..+.++|+.+++ + +|++|++++ |+.++++|+++++.++.+
T Consensus 158 ms~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g--~~~l~~~ei~~~~~~~~~ 219 (235)
T 1q5q_H 158 SDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAG--AVHVSEETTSELARRIVA 219 (235)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTE--EEECCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCC--eEEeCHHHHHHHHHHHHH
Confidence 99999999999999999999987654 2 999999874 999999999999998863
No 28
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=4e-48 Score=315.14 Aligned_cols=200 Identities=13% Similarity=0.184 Sum_probs=188.5
Q ss_pred CeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 027320 16 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 94 (225)
Q Consensus 16 ~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 94 (225)
||+|||+++||||||+|+|.+ ++++.+++.+||++|++|++|++||..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 589999999999999999999 6899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHhhccCCCCCCHHHHH
Q 027320 95 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 174 (225)
Q Consensus 95 ~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~eea~ 174 (225)
+++++.+|.|++ .||++++|+||||+++||+||.+||+|++.+++++|+|+|+++++++||+.| +++||++||+
T Consensus 81 ~~l~~~~~~~~~----~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~~s~eea~ 154 (212)
T 1ryp_L 81 KILSNLVYQYKG----AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNY--KWDLSVEDAL 154 (212)
T ss_dssp HHHHHHHHHTTT----SCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHC--CTTCCHHHHH
T ss_pred HHHHHHHHhhCC----CCceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhC--CCCCCHHHHH
Confidence 999999998875 3999999999999657999999999999999999999999999999999998 4789999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHHHHHhhc
Q 027320 175 QTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLTAISE 223 (225)
Q Consensus 175 ~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~~~~~~~~~ei~~~l~~~~~ 223 (225)
+++++||..+.++|..++ +++|++|++++ |+.++++||++++.++.+
T Consensus 155 ~la~~al~~~~~rd~~s~~~i~v~vi~~~g--~~~~~~~ei~~~~~~~~~ 202 (212)
T 1ryp_L 155 YLGKRSILAAAHRDAYSGGSVNLYHVTEDG--WIYHGNHDVGELFWKVKE 202 (212)
T ss_dssp HHHHHHHHHHHHHBTTCCSEEEEEEEETTE--EEEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCceEEEEEcCCc--eEEECHHHHHHHHHHHHH
Confidence 999999999999997655 79999999884 999999999999887763
No 29
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=5.1e-49 Score=321.93 Aligned_cols=204 Identities=14% Similarity=0.189 Sum_probs=189.2
Q ss_pred HHHhccCCeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHH-HcCC
Q 027320 9 KAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRF-KYGY 86 (225)
Q Consensus 9 kav~~~G~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~ 86 (225)
+|+++ |+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++ ++++
T Consensus 3 ~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (219)
T 1iru_N 3 NPMVT-GTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH 81 (219)
T ss_dssp SCCSE-ECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCccC-CceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 57775 9999999999999999999999 7999889999999999999999999999999999999999999998 9999
Q ss_pred CCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHhhccCCC
Q 027320 87 EMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDP 166 (225)
Q Consensus 87 ~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~ 166 (225)
+++++.+++++++.+ |+++.++|||++++|+||||+ +||+||++||+|++.+++++|+|+|++.++++||+.|++.+
T Consensus 82 ~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~ 158 (219)
T 1iru_N 82 SYSPRAIHSWLTRAM--YSRRSKMNPLWNTMVIGGYAD-GESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQP 158 (219)
T ss_dssp CCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEEET-TEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCS
T ss_pred CCCHHHHHHHHHHHH--HHhcccCCCceEEEEEEEEEC-CCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCC
Confidence 999999999999998 556677899999999999997 69999999999999999999999999999999999996433
Q ss_pred CCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHHH
Q 027320 167 AFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHL 218 (225)
Q Consensus 167 ~~s~eea~~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~~~~~~~~~ei~~~l 218 (225)
+||++||++++++||..+.++|..++ +++|++|++++ ++.+++++|+..+
T Consensus 159 ~mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g--~~~~~~~~i~~~~ 209 (219)
T 1iru_N 159 VLSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKG--VEIEGPLSTETNW 209 (219)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTE--EEEEEEECCCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCC--EEEcCCeeccchh
Confidence 89999999999999999999997765 89999999985 9999988876543
No 30
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=2.6e-48 Score=314.70 Aligned_cols=198 Identities=15% Similarity=0.196 Sum_probs=186.0
Q ss_pred CeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 027320 16 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 94 (225)
Q Consensus 16 ~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 94 (225)
||+|||+++||||||+|+|.+ +.++.+++.+||++|++|++|++||..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 589999999999999999999 5588888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHhhccCCCCCCHHHHH
Q 027320 95 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 174 (225)
Q Consensus 95 ~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~eea~ 174 (225)
+++++.+|.|++ ||++++|+||||+++||+||.+||+|++.+++++|+|+|++.++++||+.| +++||++||+
T Consensus 81 ~~l~~~~~~~~~-----p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~--~~~~s~eea~ 153 (205)
T 1iru_H 81 SLFKEMCYRYRE-----DLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATY--REGMTKEECL 153 (205)
T ss_dssp HHHHHHHHHTTT-----TCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHC--CTTCCHHHHH
T ss_pred HHHHHHHHhcCc-----CccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhc--CCCCCHHHHH
Confidence 999999988764 999999999999767899999999999999999999999999999999998 4789999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHHHHH
Q 027320 175 QTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLTA 220 (225)
Q Consensus 175 ~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~~~~~~~~~ei~~~l~~ 220 (225)
+++++||..+.++|..++ +++|++|++++..++.++++||++++.+
T Consensus 154 ~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~~ei~~~~~~ 200 (205)
T 1iru_H 154 QFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVA 200 (205)
T ss_dssp HHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECGGGSCCCCCC
T ss_pred HHHHHHHHHHHHhccccCCcEEEEEEeCCCeEEEEeChHHhhHHHhh
Confidence 999999999999997654 8999999999866899999999887654
No 31
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=1.1e-47 Score=310.72 Aligned_cols=199 Identities=15% Similarity=0.201 Sum_probs=187.5
Q ss_pred CeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 027320 16 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 94 (225)
Q Consensus 16 ~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 94 (225)
||+|||+++||||||+|+|.+ ++++.+++.+||++|++|++|++||..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 589999999999999999999 6899889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHhhccCCCCCCHHHHH
Q 027320 95 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 174 (225)
Q Consensus 95 ~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~eea~ 174 (225)
+++++.+|.|+ .+||++++|+||||+ +||+||++||+|++.+++++|+|+|++.++++||+.|+ ++||++||+
T Consensus 81 ~~l~~~~~~~r----~~~~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~--~~~s~eea~ 153 (204)
T 1iru_L 81 KLLANMVYQYK----GMGLSMGTMICGWDK-RGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYS--YDLEVEQAY 153 (204)
T ss_dssp HHHHHHHHTTT----TSCCCBEEEEEEECS-SSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCC--TTCCHHHHH
T ss_pred HHHHHHHHHhC----CCCeeEEEEEEEEeC-CCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCC--CCCCHHHHH
Confidence 99999998764 359999999999997 79999999999999999999999999999999999984 789999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHHHHHhhc
Q 027320 175 QTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLTAISE 223 (225)
Q Consensus 175 ~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~~~~~~~~~ei~~~l~~~~~ 223 (225)
+++++||..+.++|..++ +++|++|++++ |+.++++||++++.++..
T Consensus 154 ~l~~~al~~~~~rd~~s~~~i~v~vi~~~g--~~~l~~~ei~~~~~~~~~ 201 (204)
T 1iru_L 154 DLARRAIYQATYRDAYSGGAVNLYHVREDG--WIRVSSDNVADLHEKYSG 201 (204)
T ss_dssp HHHHHHHHHHHHHBTTCCSEEEEEEECSSC--EEEEEEEEHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCccCCCceEEEEEeCCc--eEEeCHHHHHHHHHHhcc
Confidence 999999999999997554 89999999874 999999999999998863
No 32
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=1.7e-48 Score=321.63 Aligned_cols=205 Identities=14% Similarity=0.225 Sum_probs=189.6
Q ss_pred HHHhccCCeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHH-----
Q 027320 9 KAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRF----- 82 (225)
Q Consensus 9 kav~~~G~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~----- 82 (225)
+++++ |+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|++|++||..+|++.+.++++.+++.|++
T Consensus 3 ~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (233)
T 1ryp_N 3 QPIVT-GTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 81 (233)
T ss_dssp CCCEE-ECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred ccccC-CceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchh
Confidence 56775 9999999999999999999999 7899889999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHhhc
Q 027320 83 KYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKM 162 (225)
Q Consensus 83 ~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~ 162 (225)
+++++++++.+++++++.+ |+++.++|||++++||||||+++||+||.+||+|++.+++++|+|+|++.++++||+.|
T Consensus 82 ~~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~ 159 (233)
T 1ryp_N 82 DAEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVV 159 (233)
T ss_dssp TTTTSCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTC
T ss_pred hcCCCCCHHHHHHHHHHHH--HHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhh
Confidence 8999999999999999998 56667789999999999999856999999999999999999999999999999999998
Q ss_pred cCCC---CCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHH
Q 027320 163 KNDP---AFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEH 217 (225)
Q Consensus 163 ~~~~---~~s~eea~~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~~~~~~~~~ei~~~ 217 (225)
++.+ +||+|||++++++||..+.++|+.++ +++|++|++++ +++.++++||+.+
T Consensus 160 ~~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~-g~~~~~~~~i~~~ 217 (233)
T 1ryp_N 160 DRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNT-GLTFKKNLQVENM 217 (233)
T ss_dssp SSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTT-EEEEEEEEECCSC
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCC-CeEEcChHhcccc
Confidence 5321 89999999999999999999998765 79999999983 2999998888766
No 33
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=4.5e-46 Score=303.19 Aligned_cols=187 Identities=15% Similarity=0.265 Sum_probs=173.5
Q ss_pred cCCeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Q 027320 14 AGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDV 92 (225)
Q Consensus 14 ~G~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (225)
.|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|++|++||..+|++.+.++++.+++.|+++++++++++.
T Consensus 8 ~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~ 87 (213)
T 1iru_M 8 NGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGA 87 (213)
T ss_dssp CCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred CCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 49999999999999999999999 55566679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHhhcc-------CC
Q 027320 93 LAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMK-------ND 165 (225)
Q Consensus 93 la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~~-------~~ 165 (225)
++++|++.+ |+++ .|||++++||||||++++|+||.+||+|++.+++++|+|+|++.++++||+.|+ ++
T Consensus 88 la~~l~~~~--y~~r--~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~~~ 163 (213)
T 1iru_M 88 IAAMLSTIL--YSRR--FFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH 163 (213)
T ss_dssp HHHHHHHHH--HHTT--TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSCCC
T ss_pred HHHHHHHHH--HhhC--CCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhccccccccccCC
Confidence 999999999 6654 799999999999997567999999999999999999999999999999999953 24
Q ss_pred CCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCC
Q 027320 166 PAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENP 204 (225)
Q Consensus 166 ~~~s~eea~~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~ 204 (225)
++||+|||++++++||..+.++|..++ +++|++|++++.
T Consensus 164 ~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~ 203 (213)
T 1iru_M 164 VPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGI 203 (213)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCCe
Confidence 789999999999999999999997665 799999999863
No 34
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=4.7e-46 Score=299.84 Aligned_cols=190 Identities=16% Similarity=0.196 Sum_probs=175.8
Q ss_pred CeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 027320 16 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 94 (225)
Q Consensus 16 ~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 94 (225)
+|+|||+++||||||+|+|.+ +.+..+++.+||++|++|++|++||..+|++.+.++++.+++.|+++++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 81 (198)
T 1ryp_K 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS 81 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred ceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 689999999999999999998 6666677999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCcccccceeEEEEEeC-CCCcEEEEECCCCceecceEEeccCChHHHHHHHHhhccCCCCCCHHHH
Q 027320 95 KWIADKSQVYTQHAYMRPLGVVAMVLSIDE-ECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQET 173 (225)
Q Consensus 95 ~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~-~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~eea 173 (225)
+++++.++.|++. ++||++++|+||||+ ++||+||.+||+|++.+++++|+|+|++.++++||+.| +++||+|||
T Consensus 82 ~~l~~~l~~~~~~--r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~--~~~~s~eea 157 (198)
T 1ryp_K 82 SFVRQELAKSIRS--RRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHY--RPDMTTEEG 157 (198)
T ss_dssp HHHHHHHHHHTTS--SSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHC--CTTCCHHHH
T ss_pred HHHHHHHHHhccc--CCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhc--CCCCCHHHH
Confidence 9999999887632 359999999999996 47999999999999999999999999999999999998 478999999
Q ss_pred HHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcCH
Q 027320 174 VQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSI 211 (225)
Q Consensus 174 ~~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~~~~~~~~ 211 (225)
++++++||..+.++|..++ +++|++|++++ ++.+++
T Consensus 158 ~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g--~~~~~~ 194 (198)
T 1ryp_K 158 LDLLKLCVQELEKRMPMDFKGVIVKIVDKDG--IRQVDD 194 (198)
T ss_dssp HHHHHHHHHHHHHHCSBCCCCEEEEEEETTE--EEEECC
T ss_pred HHHHHHHHHHHHHhCccCCCceEEEEEcCCC--EEEecc
Confidence 9999999999999986654 89999999984 888765
No 35
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=1.9e-46 Score=303.74 Aligned_cols=188 Identities=15% Similarity=0.178 Sum_probs=176.7
Q ss_pred HHHHhccCCeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCC
Q 027320 8 FKAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGY 86 (225)
Q Consensus 8 ~kav~~~G~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 86 (225)
.|++++ |+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|++|++||..+|++.+.++++.+++.|++++++
T Consensus 3 ~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 81 (205)
T 1ryp_H 3 KGEVSL-GASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT 81 (205)
T ss_dssp TTCCBC-CCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCcC-CceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 578885 9999999999999999999999 66888889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHhhccCCC
Q 027320 87 EMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDP 166 (225)
Q Consensus 87 ~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~ 166 (225)
++++.+++++++.+|.|+++ |++++|+||||+++||+||.+||+|++.+++++|+|+|++.++++||+.| ++
T Consensus 82 -~~v~~la~~l~~~~~~~~~~-----~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~ 153 (205)
T 1ryp_H 82 -PSTETAASVFKELCYENKDN-----LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNF--RE 153 (205)
T ss_dssp -CCHHHHHHHHHHHHHHTTTT-----CCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHC--CT
T ss_pred -CCHHHHHHHHHHHHHhhhcC-----ceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhcc--CC
Confidence 99999999999999988652 89999999999767899999999999999999999999999999999998 47
Q ss_pred CCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCC
Q 027320 167 AFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENP 204 (225)
Q Consensus 167 ~~s~eea~~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~ 204 (225)
+||++||++++++||..+.++|..++ +++|++|++++.
T Consensus 154 ~~s~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g~ 192 (205)
T 1ryp_H 154 NMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGV 192 (205)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEE
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCCCE
Confidence 89999999999999999999998655 899999999974
No 36
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=6.1e-46 Score=310.47 Aligned_cols=194 Identities=19% Similarity=0.220 Sum_probs=174.1
Q ss_pred HHHHHhccCCeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcC
Q 027320 7 AFKAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYG 85 (225)
Q Consensus 7 a~kav~~~G~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~ 85 (225)
+.||+++ |+|+|||+++||||||+|+|.+ +.++..++.+||++|++|++|++||..+|++.+.++++.+++.|+++++
T Consensus 22 ~~kav~~-GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~ 100 (261)
T 3nzj_H 22 QPKATST-GTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTS 100 (261)
T ss_dssp ---------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCccccc-CceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhC
Confidence 4689985 9999999999999999999999 7888889999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHhhccCC
Q 027320 86 YEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 165 (225)
Q Consensus 86 ~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~ 165 (225)
++++++.+++++++.++.| .+||++++||||||+ .||+||++||+|++.+++++|+|+|++.++++||+.| +
T Consensus 101 ~~~~v~~~a~~l~~~l~~~-----~~~~gv~llvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~--~ 172 (261)
T 3nzj_H 101 REPRVVSALQMLKQHLFKY-----QGHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHW--K 172 (261)
T ss_dssp SCCCHHHHHHHHHHHHHHT-----TTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHC--C
T ss_pred CCCCHHHHHHHHHHHHHHh-----cCcccEEEEEEEEeC-CCCEEEEECCCccEEecCeEEeccchHHHHHHHHHHh--c
Confidence 9999999999999987533 479999999999997 7899999999999999999999999999999999998 4
Q ss_pred CCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcC
Q 027320 166 PAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLS 210 (225)
Q Consensus 166 ~~~s~eea~~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~~~~~~~ 210 (225)
++|++|||++++++||..+.++|+.++ +++|++|++++. ++.+.
T Consensus 173 ~~ms~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg~-~~~~~ 217 (261)
T 3nzj_H 173 QDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKD-AEYLR 217 (261)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSC-EEEEE
T ss_pred cCCCHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCCc-EEEec
Confidence 799999999999999999999998765 899999999974 55543
No 37
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=1.5e-47 Score=321.61 Aligned_cols=208 Identities=13% Similarity=0.216 Sum_probs=190.8
Q ss_pred HHHHHHhccCCeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHH--
Q 027320 6 YAFKAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRF-- 82 (225)
Q Consensus 6 ya~kav~~~G~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-- 82 (225)
-+.+++++ |+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++
T Consensus 33 ~~~~av~~-GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~ 111 (266)
T 1g0u_M 33 NTQQPIVT-GTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDN 111 (266)
T ss_dssp -CCCCCEE-ECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhccCccc-CceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhcc
Confidence 34577885 9999999999999999999999 7898889999999999999999999999999999999999999998
Q ss_pred ---HcCCCCCHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHH
Q 027320 83 ---KYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLE 159 (225)
Q Consensus 83 ---~~~~~~~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le 159 (225)
+++++++++.+++++++.+ |+++.++|||+|++||||||+++||+||.+||+|++.+++++|+|+|++.++++||
T Consensus 112 ~~~~~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le 189 (266)
T 1g0u_M 112 PLADAEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLR 189 (266)
T ss_dssp TTTTTTTSCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHHHT
T ss_pred chhhcCCCCCHHHHHHHHHHHH--HHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHHHH
Confidence 8999999999999999998 66667789999999999999756999999999999999999999999999999999
Q ss_pred hhccCCC---CCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHH
Q 027320 160 KKMKNDP---AFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEH 217 (225)
Q Consensus 160 ~~~~~~~---~~s~eea~~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~~~~~~~~~ei~~~ 217 (225)
+.|++.+ +||+|||++++++||..+.++|..++ +++|++|++++ +|+.++++||+.+
T Consensus 190 ~~~~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~-g~~~~~~~ei~~~ 250 (266)
T 1g0u_M 190 KVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNT-GLTFKKNLQVENM 250 (266)
T ss_dssp TTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTT-EEEEEEEEECCCC
T ss_pred HhhcccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCC-CeEEcCHHHhhhh
Confidence 9985321 89999999999999999999998765 79999999984 2999998888765
No 38
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=5.6e-46 Score=306.41 Aligned_cols=191 Identities=17% Similarity=0.274 Sum_probs=177.6
Q ss_pred CeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 027320 16 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 94 (225)
Q Consensus 16 ~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 94 (225)
||+|||+++||||||+|+|.+ +.++..++.+|||+|++|++|++||..+|++.+.++++.+++.|++++|++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 689999999999999999999 5556678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHhhccCCCCCCHHHHH
Q 027320 95 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 174 (225)
Q Consensus 95 ~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~eea~ 174 (225)
+++++.++.| .+||++++||||||+ .||+||++||+|++.+++++|+|+|++.++++||+.| +++|++|||+
T Consensus 81 ~~l~~~l~~~-----~~p~~v~llvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~ms~eeA~ 152 (234)
T 3unf_H 81 RILRQTLFRY-----QGHVGASLVVGGVDL-NGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRF--QPNMTLEAAQ 152 (234)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHC--CSSCCHHHHH
T ss_pred HHHHHHHHhc-----CCCccEEEEEEEEeC-CCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhcc--CCCCCHHHHH
Confidence 9999998654 469999999999997 7999999999999999999999999999999999998 4789999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcCHHHHHH
Q 027320 175 QTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDE 216 (225)
Q Consensus 175 ~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~~~~~~~~~ei~~ 216 (225)
+++++||..+.++|+.++ +++|++|++++ ++.+++.+++.
T Consensus 153 ~la~~al~~~~~~D~~sg~~iev~vi~~dg--~~~l~~~~i~~ 193 (234)
T 3unf_H 153 ELLVEAITAGILSDLGSGGNVDACVITAGG--AKLQRALSTPT 193 (234)
T ss_dssp HHHHHHHHHHHHHBTTCCSCEEEEEEESSC--EEEEEEEECCC
T ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEEECCC--EEEeCceeccc
Confidence 999999999999998665 89999999995 89888777643
No 39
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=2.2e-45 Score=300.97 Aligned_cols=189 Identities=17% Similarity=0.312 Sum_probs=174.4
Q ss_pred HhccCCeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcC-CCC
Q 027320 11 VKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYG-YEM 88 (225)
Q Consensus 11 v~~~G~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~ 88 (225)
++ .|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|++|++||..+|++.+.++++.+++.|+++++ +++
T Consensus 6 v~-~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 84 (222)
T 1ryp_M 6 GD-NGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKL 84 (222)
T ss_dssp CC-CCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred cc-CCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 44 49999999999999999999999 5666778999999999999999999999999999999999999999999 999
Q ss_pred CHHHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHhhcc-----
Q 027320 89 PVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMK----- 163 (225)
Q Consensus 89 ~~~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~~----- 163 (225)
+++.+++++++.+ |++ +++||++++||||||++++|+||.+||+|++.+++++|+|+|++.++++||+.|+
T Consensus 85 ~v~~la~~l~~~l--y~~--r~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~ 160 (222)
T 1ryp_M 85 SINSAARNIQHLL--YGK--RFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQY 160 (222)
T ss_dssp CHHHHHHHHHHHH--HTT--TTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCB
T ss_pred CHHHHHHHHHHHH--Hhc--CCCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhccccccccc
Confidence 9999999999998 543 3789999999999997567999999999999999999999999999999999853
Q ss_pred ----------CCCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCC
Q 027320 164 ----------NDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENP 204 (225)
Q Consensus 164 ----------~~~~~s~eea~~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~ 204 (225)
++++|++|||++++++||..+.++|+.++ +++|++|++++.
T Consensus 161 ~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g~ 212 (222)
T 1ryp_M 161 EPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGV 212 (222)
T ss_dssp CTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEE
T ss_pred ccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCCe
Confidence 35799999999999999999999998765 799999999863
No 40
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=2.2e-46 Score=301.94 Aligned_cols=195 Identities=16% Similarity=0.194 Sum_probs=180.7
Q ss_pred CeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 027320 16 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 94 (225)
Q Consensus 16 ~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 94 (225)
||+|||+++||||||+|+|.+ +.++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 689999999999999999999 6688889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecce-EEeccCChHHHHHHHHhhccCCCCCCHHHH
Q 027320 95 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHK-ATSAGLKEQEAINFLEKKMKNDPAFTFQET 173 (225)
Q Consensus 95 ~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~-~~aiG~gs~~~~~~Le~~~~~~~~~s~eea 173 (225)
+++++.++.| +|||++++||||||+++||+||+ |+|++..+. ++++|+|++.++++||+.| +++||+|||
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~--~~~ms~eea 151 (199)
T 3unf_N 81 NVVKNISYKY-----REDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAY--KPGMTPEEC 151 (199)
T ss_dssp HHHHHHHHHT-----TTTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHC--CSSCCHHHH
T ss_pred HHHHHHHHhc-----CCCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhc--CCCCCHHHH
Confidence 9999999654 46999999999999867899999 999987775 6667999999999999998 478999999
Q ss_pred HHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHHHH
Q 027320 174 VQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLT 219 (225)
Q Consensus 174 ~~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~~~~~~~~~ei~~~l~ 219 (225)
++++++||..+.++|..++ +++|++|++++..|+.++++||++++.
T Consensus 152 ~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~ 198 (199)
T 3unf_N 152 RRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFYD 198 (199)
T ss_dssp HHHHHHHHHHHHHHCTTCCSCEEEEEECSSCEEEEEECGGGSCCCCC
T ss_pred HHHHHHHHHHHHHhccccCCCeEEEEEcCCCEEEEEcCcccCccccc
Confidence 9999999999999998775 799999999987799999999987653
No 41
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=7.4e-45 Score=294.37 Aligned_cols=190 Identities=17% Similarity=0.294 Sum_probs=173.2
Q ss_pred cCCeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Q 027320 14 AGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDV 92 (225)
Q Consensus 14 ~G~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (225)
+|+|+|||+++||||||+|+|.+ +.+...++.+||++|++|++|++||..+|++.+.++++.+++.|+++++++++++.
T Consensus 7 ~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~ 86 (205)
T 1iru_J 7 NGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYT 86 (205)
T ss_dssp SCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCHHH
T ss_pred CCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCHHH
Confidence 59999999999999999999999 55555558999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCcccccceeEEEEEeC-CCCcEEEEECCCCceecc-eEEeccCChHHHHHHHHhhccCCCCCCH
Q 027320 93 LAKWIADKSQVYTQHAYMRPLGVVAMVLSIDE-ECGPRLFKCDPAGHFFGH-KATSAGLKEQEAINFLEKKMKNDPAFTF 170 (225)
Q Consensus 93 la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~-~~gp~Ly~id~~G~~~~~-~~~aiG~gs~~~~~~Le~~~~~~~~~s~ 170 (225)
+++++++.+ |+++ ..||++++|+||||+ ++||+||.+||+|++.++ .++|+|+|++.++++||+.| +++||+
T Consensus 87 la~~l~~~~--y~~r--~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~--~~~~s~ 160 (205)
T 1iru_J 87 LMSMVANLL--YEKR--FGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLW--EPNMDP 160 (205)
T ss_dssp HHHHHHHHH--HTTT--TSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHC--CSSCCH
T ss_pred HHHHHHHHH--HHhc--CCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhccc--CCCCCH
Confidence 999999999 7764 349999999999995 479999999999999776 56999999999999999998 478999
Q ss_pred HHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEc
Q 027320 171 QETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVL 209 (225)
Q Consensus 171 eea~~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~~~~~~ 209 (225)
|||++++++||..+.++|..++ +++|++|++++..++.+
T Consensus 161 eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~ 200 (205)
T 1iru_J 161 DHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTL 200 (205)
T ss_dssp HHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSBEEEEEB
T ss_pred HHHHHHHHHHHHHHHHhCcccCCceEEEEEcCCCEEEEEe
Confidence 9999999999999999998765 89999999997544444
No 42
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=5.1e-45 Score=294.46 Aligned_cols=189 Identities=16% Similarity=0.259 Sum_probs=173.9
Q ss_pred CeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 027320 16 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 94 (225)
Q Consensus 16 ~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 94 (225)
+|+|||+++||||||+|+|.+ ++++.+++.+||++|++|++|++||..+|++.+.++++.+++.|+++++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 81 (201)
T 1iru_K 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA 81 (201)
T ss_dssp CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 689999999999999999999 6899889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHhhccCCCCCCHHHHH
Q 027320 95 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 174 (225)
Q Consensus 95 ~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~eea~ 174 (225)
+++++.+. |.. ...|||++++|+||||+++||+||.+||+|++.+++++|+|+|++.++++||+.| +++||++||+
T Consensus 82 ~~~~~~l~-~~~-~~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~~s~eea~ 157 (201)
T 1iru_K 82 NFTRRNLA-DCL-RSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYY--TPTISRERAV 157 (201)
T ss_dssp HHHHHHHH-HHH-TSSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHC--CTTCCHHHHH
T ss_pred HHHHHHHH-HHH-hcCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcc--cCCCCHHHHH
Confidence 99987652 221 2347999999999999767899999999999999999999999999999999998 4789999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcC
Q 027320 175 QTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLS 210 (225)
Q Consensus 175 ~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~~~~~~~ 210 (225)
+++++||..+.+||..++ +++|++|+++| ++.++
T Consensus 158 ~l~~~al~~a~~rd~~sg~~i~v~vi~~~g--~~~~~ 192 (201)
T 1iru_K 158 ELLRKCLEELQKRFILNLPTFSVRIIDKNG--IHDLD 192 (201)
T ss_dssp HHHHHHHHHHHHTBCBCCCCEEEEEEETTE--EECCC
T ss_pred HHHHHHHHHHHhhccccCCceEEEEEcCCC--eEEee
Confidence 999999999999998765 79999999985 77655
No 43
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=2.4e-44 Score=291.16 Aligned_cols=189 Identities=18% Similarity=0.238 Sum_probs=172.0
Q ss_pred cCCeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Q 027320 14 AGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDV 92 (225)
Q Consensus 14 ~G~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (225)
.|+|+|||+++||||||+|+|.+ +.+...++.+||++|+ |++|+++|..+|++.+.++++.+++.|+++++++++++.
T Consensus 7 ~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~ 85 (204)
T 1ryp_J 7 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPET 85 (204)
T ss_dssp SCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred CCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCHHH
Confidence 59999999999999999999999 5554555899999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCcccccceeEEEEEeC-CCCcEEEEECCCCceecc-eEEeccCChHHHHHHHHhhccCCCCCCH
Q 027320 93 LAKWIADKSQVYTQHAYMRPLGVVAMVLSIDE-ECGPRLFKCDPAGHFFGH-KATSAGLKEQEAINFLEKKMKNDPAFTF 170 (225)
Q Consensus 93 la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~-~~gp~Ly~id~~G~~~~~-~~~aiG~gs~~~~~~Le~~~~~~~~~s~ 170 (225)
+++++++.+ |+++. .||++++|+||||+ ++||+||.+||+|++.++ .++|+|+|++.++++||+.| +++|++
T Consensus 86 la~~l~~~~--y~~~~--~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~--~~~~s~ 159 (204)
T 1ryp_J 86 FTQLVSSSL--YERRF--GPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLY--EPNLEP 159 (204)
T ss_dssp HHHHHHHHH--HTTTT--SCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHC--CSSCCH
T ss_pred HHHHHHHHH--HHhcC--CCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhc--CCCcCH
Confidence 999999999 77653 39999999999996 478999999999999776 57999999999999999998 478999
Q ss_pred HHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEc
Q 027320 171 QETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVL 209 (225)
Q Consensus 171 eea~~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~~~~~~ 209 (225)
|||++++++||..+.++|..++ +++|++|++++..++.+
T Consensus 160 eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~ 199 (204)
T 1ryp_J 160 EDLFETISQALLNAADRDALSGWGAVVYIIKKDEVVKRYL 199 (204)
T ss_dssp HHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCCEEEEEe
Confidence 9999999999999999997654 89999999997544444
No 44
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=2.2e-44 Score=294.96 Aligned_cols=186 Identities=18% Similarity=0.213 Sum_probs=173.0
Q ss_pred CeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 027320 16 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 94 (225)
Q Consensus 16 ~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 94 (225)
||+|||+++||||||+|+|.+ +.++..++.+||++|++|++|++||..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 589999999999999999999 6667777999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHhhccCCCCCCHHHHH
Q 027320 95 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 174 (225)
Q Consensus 95 ~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~eea~ 174 (225)
+++++.++.| .|||++++|+||||+ +||+||.+||+|++.+++++|+|+|++.++++||+.| +++|++|||+
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~ms~eeA~ 152 (222)
T 1ryp_I 81 QMLKQHLFKY-----QGHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHW--KQDLTKEEAI 152 (222)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHC--CSSCCHHHHH
T ss_pred HHHHHHHhhc-----CCCCCeeEEEEEEeC-CCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhC--CCCcCHHHHH
Confidence 9999998654 479999999999997 7899999999999999999999999999999999998 4789999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcC
Q 027320 175 QTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLS 210 (225)
Q Consensus 175 ~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~~~~~~~ 210 (225)
+++++||..+.++|..++ +++|++++++++ ++.++
T Consensus 153 ~la~~al~~~~~~d~~sg~~i~v~vi~~~g~-~~~~~ 188 (222)
T 1ryp_I 153 KLASDAIQAGIWNDLGSGSNVDVCVMEIGKD-AEYLR 188 (222)
T ss_dssp HHHHHHHHHHHHHCTTCCSCEEEEEEETTSC-EEEEE
T ss_pred HHHHHHHHHHHhccccCCCcEEEEEEECCCC-EEEEe
Confidence 999999999999998765 799999999863 66554
No 45
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=2.2e-43 Score=291.22 Aligned_cols=186 Identities=17% Similarity=0.215 Sum_probs=172.3
Q ss_pred CeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 027320 16 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 94 (225)
Q Consensus 16 ~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 94 (225)
||+|||+++||||||+|+|.+ +.++..++.+|||+|++|++|++||..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 589999999999999999999 5555667899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecceEEeccCChHHHHHHHHhhccCCCCCCHHHHH
Q 027320 95 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 174 (225)
Q Consensus 95 ~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~aiG~gs~~~~~~Le~~~~~~~~~s~eea~ 174 (225)
+++++.++.| .+||++++|+||||+ .||+||.+||+|++.+++++|+|+|++.++++||+.| +++|+++||+
T Consensus 81 ~~l~~~l~~~-----~~~~~v~llvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~ms~eeA~ 152 (234)
T 1iru_I 81 RMLKQMLFRY-----RGYIGAALVLGGVDV-TGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKF--RPDMEEEEAK 152 (234)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEECS-SCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSC--CTTCCHHHHH
T ss_pred HHHHHHHHhc-----CCCCceeEEEEEEcC-CCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhc--cCCCCHHHHH
Confidence 9999988654 369999999999997 7899999999999999999999999999999999998 4789999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcCH
Q 027320 175 QTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSI 211 (225)
Q Consensus 175 ~l~~~~l~~~~~~d~~~~-~vei~iv~~~~~~~~~~~~ 211 (225)
+++++||..+.++|+.++ +++|++|++++ ++.+++
T Consensus 153 ~la~~al~~a~~~d~~sg~~i~v~vi~k~g--~~~~~~ 188 (234)
T 1iru_I 153 NLVSEAIAAGIFNDLGSGSNIDLCVISKNK--LDFLRP 188 (234)
T ss_dssp THHHHHHHHHHHHCTTCCSCEEEEEEETTE--EECCSE
T ss_pred HHHHHHHHHHHHhcccCCCCEEEEEEECCc--EEEEcc
Confidence 999999999999998765 89999999985 776554
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=4.2e-37 Score=244.11 Aligned_cols=169 Identities=15% Similarity=0.144 Sum_probs=149.3
Q ss_pred cCCeEEEEEcCCEEEEEEeccCC-CCc-cccCCcceeEEe-cCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCH
Q 027320 14 AGVTSIGVRGKDSVCVVTQKKVP-DKL-LDHTSVTHLFPI-TKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPV 90 (225)
Q Consensus 14 ~G~t~vgi~~~dgvvlaad~~~~-~~l-~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 90 (225)
.|+|+|||+++||||||+|+|.+ +.+ +.+++.+||++| ++|++|+++|..+|++.+.++++.+++.|+ |
T Consensus 4 ~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g----- 75 (180)
T 2z3b_A 4 HATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G----- 75 (180)
T ss_dssp CCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T-----
T ss_pred CCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C-----
Confidence 49999999999999999999999 688 899999999999 999999999999999999999999999887 3
Q ss_pred HHHHHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecc--eEEeccCChHHHHHHHHhhccCCC-C
Q 027320 91 DVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH--KATSAGLKEQEAINFLEKKMKNDP-A 167 (225)
Q Consensus 91 ~~la~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~--~~~aiG~gs~~~~~~Le~~~~~~~-~ 167 (225)
.+.+.++.+.|.++++..+|||++++|+| | +|+||.+||+|++.++ +++|+|+|+++++++||+.|++.+ +
T Consensus 76 -~~~~~~~~l~~~~~~~~~~rp~~~~~lva--d---~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~~ 149 (180)
T 2z3b_A 76 -NLKRAAVELAKEWRSDKVLRKLEAMLIVM--N---QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGES 149 (180)
T ss_dssp -CHHHHHHHHHHHHHHCTTGGGCCCCEEEE--C---SSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHGGG
T ss_pred -ChHHHHHHHHHHHHhhhCcCcceEEEEEE--c---CCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccCCC
Confidence 23444445566677788899999999999 4 6999999999999984 999999999999999999995211 7
Q ss_pred CCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEE
Q 027320 168 FTFQETVQTAISTLQSVLQEDFKAS-EIEVGVV 199 (225)
Q Consensus 168 ~s~eea~~l~~~~l~~~~~~d~~~~-~vei~iv 199 (225)
|+.|| ++.+||+.+.+||..++ +++|.+|
T Consensus 150 mt~ee---l~~~al~~a~~rd~~sg~~i~v~~i 179 (180)
T 2z3b_A 150 MSASE---IARAALETAGEICVYTNDQIILEEL 179 (180)
T ss_dssp CCHHH---HHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred CCHHH---HHHHHHHHHHHhcCccCCeEEEEEE
Confidence 99999 46799999999998886 7999887
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=1.2e-36 Score=239.48 Aligned_cols=166 Identities=14% Similarity=0.115 Sum_probs=144.9
Q ss_pred CeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEe-cCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q 027320 16 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPI-TKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVL 93 (225)
Q Consensus 16 ~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 93 (225)
||+|||+++||||||+|+|.+ +.++.+++.+|||+| ++|++|+++|..+|++.+.++++.+++.|+.+ .++.
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~- 74 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKA- 74 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHH-
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHH-
Confidence 589999999999999999999 789999999999999 99999999999999999999999999987633 2344
Q ss_pred HHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecce--EEeccCChHHHHHHHHhhccCCCCCCHH
Q 027320 94 AKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHK--ATSAGLKEQEAINFLEKKMKNDPAFTFQ 171 (225)
Q Consensus 94 a~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~--~~aiG~gs~~~~~~Le~~~~~~~~~s~e 171 (225)
++++.+.+++++..|||++++|++ | ||+||++||+|++.+++ ++|+|+|+++++++||+.|+. ++|+.
T Consensus 75 ---~~~l~~~~~~~~~~~~~~~~~lv~--D---~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~-~~ms~- 144 (171)
T 1m4y_A 75 ---AVELAKDWRTDRVLRRLEALLLVA--D---KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRN-TDLSA- 144 (171)
T ss_dssp ---HHHHHHHHHHCTTGGGCCCEEEEE--C---SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHH-CCCCH-
T ss_pred ---HHHHHHHHHHhCCCCceEEEEEEE--c---CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhccc-CCCCH-
Confidence 444444566667788999999998 5 79999999999999988 999999999999999999952 68986
Q ss_pred HHHHHHHHHHHHhhhccCCCC-cEEEEEE
Q 027320 172 ETVQTAISTLQSVLQEDFKAS-EIEVGVV 199 (225)
Q Consensus 172 ea~~l~~~~l~~~~~~d~~~~-~vei~iv 199 (225)
.+++++||+.+.+||..++ +++|.++
T Consensus 145 --~~l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 145 --REIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp --HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred --HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence 6789999999999998765 7888753
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=2.3e-36 Score=238.60 Aligned_cols=167 Identities=15% Similarity=0.097 Sum_probs=146.6
Q ss_pred CeEEEEEcCCEEEEEEeccCC-CCccccCCcceeEEe-cCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q 027320 16 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPI-TKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVL 93 (225)
Q Consensus 16 ~t~vgi~~~dgvvlaad~~~~-~~l~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 93 (225)
||+|||+++||||||+|+|.+ +.++.+++.+||++| ++|++|+++|..+|++.+.++++.+++.|+. + +
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~---~ 71 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------H---L 71 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------C---H
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------c---H
Confidence 589999999999999999999 678889999999999 9999999999999999999999999998874 2 3
Q ss_pred HHHHHHHHHHhhhccCcccccceeEEEEEeCCCCcEEEEECCCCceecce---EEeccCChHHHHHHHHhhccCCCCCCH
Q 027320 94 AKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHK---ATSAGLKEQEAINFLEKKMKNDPAFTF 170 (225)
Q Consensus 94 a~~ls~~~~~~t~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~---~~aiG~gs~~~~~~Le~~~~~~~~~s~ 170 (225)
.+.++.+.+.+++++.+||+ +.+++|+| +|+||++||+|++.+++ ++|+|+|+++++++||+.|+. ++|+.
T Consensus 72 ~~~~~~l~~~~~~~~~~r~~--~~~l~g~d---~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~-~~mt~ 145 (174)
T 1g3k_A 72 LKSAVELAKDWRTDRALRKL--EAMLIVAD---EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVEN-TELSA 145 (174)
T ss_dssp HHHHHHHHHHHHHSTTGGGC--CCEEEEEC---SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHH-CCCCH
T ss_pred HHHHHHHHHHHHhccCcCcc--eEEEEEEC---CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhccc-CCCCH
Confidence 44455555666777778885 57788887 69999999999999988 999999999999999999952 68995
Q ss_pred HHHHHHHHHHHHHhhhccCCCC-cEEEEEEE
Q 027320 171 QETVQTAISTLQSVLQEDFKAS-EIEVGVVS 200 (225)
Q Consensus 171 eea~~l~~~~l~~~~~~d~~~~-~vei~iv~ 200 (225)
+ +++++||+.+.+||..++ +++|.+|+
T Consensus 146 ~---~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 146 H---EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp H---HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred H---HHHHHHHHHHHHhccccCCceEEEEec
Confidence 5 799999999999998765 79999985
No 49
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=50.22 E-value=39 Score=22.60 Aligned_cols=53 Identities=13% Similarity=0.156 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHHhh
Q 027320 165 DPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 222 (225)
Q Consensus 165 ~~~~s~eea~~l~~~~l~~~~~~d~~~~~vei~iv~~~~~~~~~~~~~ei~~~l~~~~ 222 (225)
.++++.++..+.+...++. .....+.+.+++.+|.-+...+.+|++..++-+.
T Consensus 23 ~~~i~~~~L~~kv~~~~~~-----~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~ 75 (89)
T 1vd2_A 23 EPSISFEGLCNEVRDMCSF-----DNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYE 75 (89)
T ss_dssp CTTCCHHHHHHHHHHHTTC-----CSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCC-----CCCCeEEEEEECCCCCcccccCHHHHHHHHHHHH
Confidence 3578999988886664431 1224699999999886688899999999887443
No 50
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=42.04 E-value=58 Score=22.89 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=26.2
Q ss_pred CCcEEEEEEEcCCCc-EEEcCHHHHHHHHHHhh
Q 027320 191 ASEIEVGVVSKENPE-FRVLSIEEIDEHLTAIS 222 (225)
Q Consensus 191 ~~~vei~iv~~~~~~-~~~~~~~ei~~~l~~~~ 222 (225)
++.+-|.|++++++. +|.++++++-.+..++.
T Consensus 66 ~~~~vVkVvD~~TgEVIRqIPpEe~L~l~~~l~ 98 (117)
T 2hc5_A 66 LNEYYVKVIEDSTNEVIREIPPKRWLDFYAAMT 98 (117)
T ss_dssp TTEEEEEEEETTTTEEEEEECHHHHHHHHHHHH
T ss_pred CCcEEEEEEECCCCcEEEeCChHHHHHHHHHHH
Confidence 456889999998664 58999999999888775
No 51
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=41.51 E-value=37 Score=23.15 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=21.4
Q ss_pred EEEEEEcCCCcEEEcCHHHHHHHHHH
Q 027320 195 EVGVVSKENPEFRVLSIEEIDEHLTA 220 (225)
Q Consensus 195 ei~iv~~~~~~~~~~~~~ei~~~l~~ 220 (225)
-|.+.+++++.|+.+++++|...+..
T Consensus 30 ~I~W~~~~~g~Fkl~d~~~VArlWG~ 55 (97)
T 1yo5_C 30 FIRWLNKEKGIFKIEDSAQVARLWGI 55 (97)
T ss_dssp TEEEEETTTTEEEESCHHHHHHHHHH
T ss_pred ceEeecCCCCEEEecCHHHHHHHHHh
Confidence 37888877668999999999988754
No 52
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.06 E-value=41 Score=23.76 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=22.1
Q ss_pred EEEEEEcCCCcEEEcCHHHHHHHHHH
Q 027320 195 EVGVVSKENPEFRVLSIEEIDEHLTA 220 (225)
Q Consensus 195 ei~iv~~~~~~~~~~~~~ei~~~l~~ 220 (225)
-|.+.+++++.|+.+++++|...+..
T Consensus 27 ~I~W~~~~~g~Fklvdp~~VArlWG~ 52 (118)
T 2dao_A 27 FIRWEDKESKIFRIVDPNGLARLWGN 52 (118)
T ss_dssp TEEEEEGGGTEEEESCHHHHHHHHHH
T ss_pred ceEeeCCCCCeEEEeCHHHHHHHHHh
Confidence 48899988767999999999988754
No 53
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=30.01 E-value=89 Score=23.97 Aligned_cols=37 Identities=14% Similarity=0.302 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCC
Q 027320 165 DPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENP 204 (225)
Q Consensus 165 ~~~~s~eea~~l~~~~l~~~~~~d~~~~~vei~iv~~~~~ 204 (225)
.+.+++++|.+++..++..+.++.. .+.|.|++..|.
T Consensus 62 ~~~ltl~~A~~l~~aA~~~A~~~g~---pV~IaVvD~~G~ 98 (192)
T 3fpw_A 62 STHLTLEAATKAARAAVEAAEKDGR---HVSVAVVDRNGN 98 (192)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTTC---CCEEEEEETTSC
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcCC---CEEEEEEeCCCC
Confidence 5679999999999999999887654 489999988764
No 54
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=29.93 E-value=69 Score=21.99 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=21.2
Q ss_pred EEEEEcCCCcEEEcCHHHHHHHHHH
Q 027320 196 VGVVSKENPEFRVLSIEEIDEHLTA 220 (225)
Q Consensus 196 i~iv~~~~~~~~~~~~~ei~~~l~~ 220 (225)
|.+++++.+.|+.++++++..+...
T Consensus 25 I~W~~~~~g~Fkl~dp~~VArlWG~ 49 (103)
T 3jtg_A 25 MKWENRHEGVFKFLRSEAVAQLWGQ 49 (103)
T ss_dssp EEEEETTTTEEEESSHHHHHHHHHH
T ss_pred cccccCCCceEEecCHHHHHHHHHh
Confidence 8899987667999999999888754
No 55
>3kol_A Oxidoreductase, glyoxalase/bleomycin resistance protein/dioxygenase; metal ION binding, NYSGXRC, PSI2, structural genomics; 1.90A {Nostoc punctiforme pcc 73102}
Probab=29.44 E-value=73 Score=21.90 Aligned_cols=19 Identities=21% Similarity=0.503 Sum_probs=15.2
Q ss_pred CCcEEEEECCCCceecceE
Q 027320 126 CGPRLFKCDPAGHFFGHKA 144 (225)
Q Consensus 126 ~gp~Ly~id~~G~~~~~~~ 144 (225)
.|..+|..||.|+..+...
T Consensus 132 ~g~~~~~~DPdG~~iel~~ 150 (156)
T 3kol_A 132 TGRGVYFYDPDGFMIEIRC 150 (156)
T ss_dssp CCEEEEEECTTSCEEEEEE
T ss_pred CccEEEEECCCCCEEEEEe
Confidence 4568899999999987643
No 56
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=28.25 E-value=50 Score=22.88 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=21.2
Q ss_pred EEEEEEcCCCcEEEcCHHHHHHHHHH
Q 027320 195 EVGVVSKENPEFRVLSIEEIDEHLTA 220 (225)
Q Consensus 195 ei~iv~~~~~~~~~~~~~ei~~~l~~ 220 (225)
-|.+.+++.+.|+.+++++|......
T Consensus 28 ~I~W~~~~~g~Fkl~d~e~VArlWG~ 53 (107)
T 1wwx_A 28 ILEWEDREQGIFRVVKSEALAKMWGQ 53 (107)
T ss_dssp CCEEEETTTTEEECSCHHHHHHHHHH
T ss_pred cEEeecCCCCEEEecCHHHHHHHHHh
Confidence 37888876667999999999988754
No 57
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=25.61 E-value=1.1e+02 Score=18.18 Aligned_cols=35 Identities=23% Similarity=0.450 Sum_probs=23.7
Q ss_pred HHHHHHHhhccCCCCCC--HHHHHHHHHHHHHHhhhcc
Q 027320 153 EAINFLEKKMKNDPAFT--FQETVQTAISTLQSVLQED 188 (225)
Q Consensus 153 ~~~~~Le~~~~~~~~~s--~eea~~l~~~~l~~~~~~d 188 (225)
.+..||..... ...++ -.|.+++|++||..+.+-+
T Consensus 8 sIi~FL~~~~~-~~~~s~D~~ESleVAiqCi~~aF~v~ 44 (52)
T 4gof_A 8 AIIQFLHDQLR-HGGLSSDAQESLEVAIQCLETAFGVT 44 (52)
T ss_dssp HHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhcc-cCCcCHhHHHHHHHHHHHHHHHcCCC
Confidence 45566666543 23444 4568999999999998644
No 58
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=25.08 E-value=65 Score=23.37 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCC
Q 027320 166 PAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENP 204 (225)
Q Consensus 166 ~~~s~eea~~l~~~~l~~~~~~d~~~~~vei~iv~~~~~ 204 (225)
+.+|.++|.+++..+...+.++.. .+.|+|++..|.
T Consensus 10 ~~lt~~~A~~l~~aa~~~A~~~g~---~v~IaVvD~~G~ 45 (145)
T 2a2l_A 10 QTITLAAAQQMAAAVEKKATEINV---AVVFSVVDRGGN 45 (145)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTC---CCEEEEEETTSC
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCC---CEEEEEEECCCC
Confidence 458999999999999998876543 589999997764
No 59
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=23.92 E-value=1.4e+02 Score=20.00 Aligned_cols=35 Identities=6% Similarity=0.234 Sum_probs=24.2
Q ss_pred HHHHHHHhhccCCCCCCH--HHHHHHHHHHHHHhhhcc
Q 027320 153 EAINFLEKKMKNDPAFTF--QETVQTAISTLQSVLQED 188 (225)
Q Consensus 153 ~~~~~Le~~~~~~~~~s~--eea~~l~~~~l~~~~~~d 188 (225)
.+..||..... ...++. .|.+++|++||..+.+-+
T Consensus 25 sIIdFL~~sv~-~~~ls~D~~ESLEVAIqCI~~AF~Vd 61 (92)
T 4asv_A 25 LIVNYFSSIVE-KKEISEDGADSLNVAMDCISEAFGFE 61 (92)
T ss_dssp HHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhcc-cCCcCHHHHHHHHHHHHHHHHHhCCC
Confidence 45567766653 344554 568999999999998643
No 60
>4g6x_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.73A {Catenulispora acidiphila}
Probab=23.24 E-value=96 Score=21.75 Aligned_cols=29 Identities=17% Similarity=0.023 Sum_probs=20.1
Q ss_pred cceeEEEEEeCCCCcEEEEECCCCceecc
Q 027320 114 GVVAMVLSIDEECGPRLFKCDPAGHFFGH 142 (225)
Q Consensus 114 ~v~~ll~G~d~~~gp~Ly~id~~G~~~~~ 142 (225)
|+.++-.-.+...|-..|..||.|+..+.
T Consensus 120 Gv~~~~~p~~~~~g~~~~f~DPdGn~iel 148 (155)
T 4g6x_A 120 GVRFTQEPTDMGPVVTAILDDTCGNLIQL 148 (155)
T ss_dssp TCCEEEEEEECSSCEEEEEECSSSCEEEE
T ss_pred CcEEeeCCEEcCCeEEEEEECCCCCEEEE
Confidence 44444444565557778889999998875
No 61
>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B
Probab=20.65 E-value=1.8e+02 Score=18.65 Aligned_cols=35 Identities=6% Similarity=0.234 Sum_probs=24.3
Q ss_pred HHHHHHHhhccCCCCCCH--HHHHHHHHHHHHHhhhcc
Q 027320 153 EAINFLEKKMKNDPAFTF--QETVQTAISTLQSVLQED 188 (225)
Q Consensus 153 ~~~~~Le~~~~~~~~~s~--eea~~l~~~~l~~~~~~d 188 (225)
.+..||..... ...++. .|.+++|++||..+.+-+
T Consensus 13 sIi~FL~~~~~-~~~ls~D~~ESLeVAiqCI~~aF~v~ 49 (74)
T 2lxb_A 13 LIVNYFSSIVE-KKEISEDGADSLNVAMDCISEAFGFE 49 (74)
T ss_dssp HHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhcc-cCCcCHHHHHHHHHHHHHHHHHhCCC
Confidence 45567766653 344554 568999999999998644
Done!