BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>027321
MLTGFHCNTLPFSCLPSRRSRTRTTDIILSALSKTPRFTSACRSSVPIHPTAFNFPTRRF
SKVVSALVSEENAVATDVFKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGK
KFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPLFQN
NPVRALKLKVEMVPNSESKRLLAQFWVLPGNALRMGISSILHKAN

High Scoring Gene Products

Symbol, full name Information P value
AT1G29700 protein from Arabidopsis thaliana 8.8e-47

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027321
        (225 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2013723 - symbol:AT1G29700 "AT1G29700" species...   490  8.8e-47   1


>TAIR|locus:2013723 [details] [associations]
            symbol:AT1G29700 "AT1G29700" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0010207 "photosystem II assembly"
            evidence=RCA] [GO:0010264 "myo-inositol hexakisphosphate
            biosynthetic process" evidence=RCA] EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0009507 EMBL:AC068667
            eggNOG:COG2220 EMBL:AC079288 EMBL:AY042829 EMBL:AY072516
            IPI:IPI00538940 PIR:D86420 RefSeq:NP_564334.1 UniGene:At.24951
            ProteinModelPortal:Q9C535 STRING:Q9C535 PaxDb:Q9C535 PRIDE:Q9C535
            EnsemblPlants:AT1G29700.1 GeneID:839847 KEGG:ath:AT1G29700
            TAIR:At1g29700 HOGENOM:HOG000232903 InParanoid:Q9C535 OMA:LYYEPHG
            PhylomeDB:Q9C535 ProtClustDB:CLSN2688084 Genevestigator:Q9C535
            Uniprot:Q9C535
        Length = 350

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 103/181 (56%), Positives = 122/181 (67%)

Query:     6 HCNTLPFSCLPXXXXXXXXXDIILSALSKTPRFTSACRS-SVPIHPTAFNFPTRRFSKVV 64
             H N+LP S                   S TP   S  RS S+ + P        R   VV
Sbjct:    16 HANSLPLSINTKSRVLSASA---FPLFSSTPHLPS--RSLSIRLSPNV-----SRSLTVV 65

Query:    65 SALVSEENAV-----ATDVFKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAG 119
             S+++SE+ A       TD FKLTYLEGNSWLW+  G+K+LVDPILVGNLDFGIPWL+DA 
Sbjct:    66 SSVLSEDRATNVSGSGTDAFKLTYLEGNSWLWETAGLKILVDPILVGNLDFGIPWLYDAA 125

Query:   120 KKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPLFQ 179
             K++LK+F+L DLP+VDCLLITQSLDDHCHL TL+PLS+ SP +KVIATPNAK LLDPLF 
Sbjct:   126 KRYLKAFKLDDLPEVDCLLITQSLDDHCHLNTLRPLSEKSPGIKVIATPNAKPLLDPLFS 185

Query:   180 N 180
             N
Sbjct:   186 N 186


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.137   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      225       216   0.00088  112 3  11 22  0.48    32
                                                     32  0.50    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  179 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.84u 0.10s 19.94t   Elapsed:  00:00:01
  Total cpu time:  19.84u 0.10s 19.94t   Elapsed:  00:00:01
  Start:  Fri May 10 09:42:09 2013   End:  Fri May 10 09:42:10 2013

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