Query 027321
Match_columns 225
No_of_seqs 263 out of 1657
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 08:11:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027321.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027321hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2220 Predicted Zn-dependent 99.9 1.9E-22 4E-27 174.1 14.4 134 75-219 3-151 (258)
2 PRK11709 putative L-ascorbate 99.9 1.5E-22 3.3E-27 182.2 14.2 144 74-219 33-219 (355)
3 PRK00685 metal-dependent hydro 99.9 6.9E-22 1.5E-26 166.7 14.3 122 79-219 1-134 (228)
4 KOG3798 Predicted Zn-dependent 99.8 1.6E-19 3.4E-24 152.9 7.4 129 76-210 78-212 (343)
5 PF13483 Lactamase_B_3: Beta-l 99.8 8.5E-19 1.8E-23 141.1 10.4 100 80-220 1-106 (163)
6 PRK02113 putative hydrolase; P 99.4 3.2E-12 7E-17 109.6 11.0 112 86-215 35-161 (252)
7 PRK11244 phnP carbon-phosphoru 99.4 6.7E-12 1.4E-16 107.7 12.2 112 86-219 37-154 (250)
8 TIGR03307 PhnP phosphonate met 99.3 4.4E-11 9.6E-16 101.9 11.7 112 86-219 27-144 (238)
9 PF12706 Lactamase_B_2: Beta-l 99.3 7.1E-12 1.5E-16 102.2 5.8 89 129-219 25-129 (194)
10 TIGR02651 RNase_Z ribonuclease 99.3 3.1E-11 6.8E-16 105.8 9.8 119 85-219 17-150 (299)
11 TIGR00649 MG423 conserved hypo 99.2 1E-10 2.3E-15 107.8 11.6 128 84-218 12-149 (422)
12 smart00849 Lactamase_B Metallo 99.2 9.5E-11 2.1E-15 93.8 9.9 123 82-221 2-138 (183)
13 PRK11921 metallo-beta-lactamas 99.2 1.2E-10 2.6E-15 106.5 10.0 111 86-209 33-147 (394)
14 PRK05184 pyrroloquinoline quin 99.2 2.3E-10 5E-15 101.3 11.0 118 86-216 39-185 (302)
15 COG0426 FpaA Uncharacterized f 99.1 2E-10 4.4E-15 103.9 8.6 109 87-208 37-149 (388)
16 TIGR03675 arCOG00543 arCOG0054 99.1 7.4E-10 1.6E-14 106.8 12.7 120 77-207 173-325 (630)
17 PRK04286 hypothetical protein; 99.1 7.9E-10 1.7E-14 97.7 11.3 124 86-216 15-170 (298)
18 TIGR02108 PQQ_syn_pqqB coenzym 99.0 1.7E-09 3.7E-14 95.8 10.7 123 86-218 38-187 (302)
19 PRK05452 anaerobic nitric oxid 99.0 7.4E-10 1.6E-14 103.8 8.7 111 86-209 35-151 (479)
20 TIGR02649 true_RNase_BN ribonu 99.0 3.4E-09 7.4E-14 93.5 9.6 119 85-219 16-152 (303)
21 PRK02126 ribonuclease Z; Provi 98.8 4.3E-08 9.2E-13 88.1 10.7 120 80-219 10-175 (334)
22 COG0595 mRNA degradation ribon 98.8 5.3E-08 1.2E-12 92.4 11.6 134 77-219 7-158 (555)
23 PLN02469 hydroxyacylglutathion 98.8 2.5E-08 5.3E-13 86.6 8.5 97 84-204 9-112 (258)
24 COG1236 YSH1 Predicted exonucl 98.8 6.7E-08 1.5E-12 89.5 11.5 120 84-219 12-155 (427)
25 PLN02398 hydroxyacylglutathion 98.7 9.7E-08 2.1E-12 85.5 10.4 105 78-204 75-187 (329)
26 TIGR03413 GSH_gloB hydroxyacyl 98.7 9.3E-08 2E-12 82.3 9.9 106 84-216 7-117 (248)
27 COG1782 Predicted metal-depend 98.7 1.8E-07 4E-12 86.5 12.0 121 77-208 179-332 (637)
28 COG1237 Metal-dependent hydrol 98.7 3.3E-08 7.1E-13 84.8 5.7 73 87-172 23-96 (259)
29 PRK10241 hydroxyacylglutathion 98.7 5.7E-08 1.2E-12 83.8 7.1 92 89-204 15-110 (251)
30 PLN02962 hydroxyacylglutathion 98.6 7E-08 1.5E-12 83.4 7.1 101 84-205 21-126 (251)
31 PRK00055 ribonuclease Z; Revie 98.6 5.6E-08 1.2E-12 83.4 5.8 84 79-176 2-100 (270)
32 COG2248 Predicted hydrolase (m 98.4 2.2E-06 4.7E-11 73.5 9.7 117 88-217 17-170 (304)
33 PF00753 Lactamase_B: Metallo- 98.4 1.9E-07 4.1E-12 74.2 2.9 75 83-169 3-77 (194)
34 KOG1137 mRNA cleavage and poly 98.3 1.9E-06 4E-11 80.5 7.5 131 76-219 11-173 (668)
35 COG1234 ElaC Metal-dependent h 98.2 7E-06 1.5E-10 72.5 9.4 123 79-218 2-144 (292)
36 KOG1136 Predicted cleavage and 98.2 1.3E-05 2.8E-10 71.3 9.7 119 78-208 3-160 (501)
37 KOG0813 Glyoxylase [General fu 98.2 1.2E-05 2.6E-10 69.7 9.0 76 130-213 48-124 (265)
38 COG0491 GloB Zn-dependent hydr 98.1 7.7E-06 1.7E-10 68.2 7.6 108 86-206 25-150 (252)
39 TIGR00361 ComEC_Rec2 DNA inter 98.1 2.9E-05 6.4E-10 75.7 11.8 110 77-201 438-551 (662)
40 PRK11539 ComEC family competen 98.1 2.8E-05 6.1E-10 76.9 11.1 107 76-201 498-608 (755)
41 COG1235 PhnP Metal-dependent h 98.0 5.2E-06 1.1E-10 72.2 4.6 84 132-219 61-151 (269)
42 KOG1135 mRNA cleavage and poly 98.0 2.7E-05 5.8E-10 74.5 8.9 109 85-206 14-151 (764)
43 COG2333 ComEC Predicted hydrol 97.7 0.00018 3.8E-09 63.6 8.8 107 79-201 44-159 (293)
44 KOG0814 Glyoxylase [General fu 97.4 0.00053 1.2E-08 56.1 6.7 87 94-204 31-121 (237)
45 TIGR02650 RNase_Z_T_toga ribon 97.2 0.00079 1.7E-08 59.0 6.2 88 130-217 37-147 (277)
46 PF14597 Lactamase_B_5: Metall 96.8 0.0012 2.7E-08 54.2 3.8 108 84-216 21-128 (199)
47 KOG2121 Predicted metal-depend 94.6 0.01 2.2E-07 57.7 0.2 93 76-177 440-552 (746)
48 COG2015 Alkyl sulfatase and re 92.5 0.085 1.8E-06 49.6 2.5 71 87-169 127-202 (655)
49 KOG1361 Predicted hydrolase in 92.3 0.32 6.9E-06 45.8 6.0 70 133-208 112-185 (481)
50 KOG4736 Uncharacterized conser 89.9 1.3 2.7E-05 39.2 7.0 91 87-205 96-188 (302)
51 PF02112 PDEase_II: cAMP phosp 82.7 1.1 2.4E-05 40.5 2.9 43 133-177 79-126 (335)
52 KOG3592 Microtubule-associated 78.5 1.1 2.5E-05 44.0 1.5 48 87-148 49-96 (934)
53 COG5212 PDE1 Low-affinity cAMP 70.9 9.5 0.00021 33.8 5.2 124 79-207 56-204 (356)
54 KOG3798 Predicted Zn-dependent 66.1 2.4 5.3E-05 37.0 0.6 60 90-152 98-157 (343)
55 PF00478 IMPDH: IMP dehydrogen 49.6 9.3 0.0002 34.8 1.5 36 133-169 120-157 (352)
56 PRK05096 guanosine 5'-monophos 46.8 17 0.00036 33.1 2.6 37 132-169 121-159 (346)
57 PF13691 Lactamase_B_4: tRNase 46.3 38 0.00081 23.0 3.7 49 86-148 12-62 (63)
58 TIGR01305 GMP_reduct_1 guanosi 40.3 23 0.0005 32.2 2.5 35 132-167 120-156 (343)
59 PRK01906 tetraacyldisaccharide 24.8 2.3E+02 0.0051 25.6 6.3 57 155-215 122-184 (338)
60 PF11319 DUF3121: Protein of u 22.1 78 0.0017 25.9 2.5 21 201-221 122-142 (183)
61 PRK05458 guanosine 5'-monophos 21.0 60 0.0013 29.2 1.7 33 134-167 112-146 (326)
No 1
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=99.89 E-value=1.9e-22 Score=174.11 Aligned_cols=134 Identities=21% Similarity=0.172 Sum_probs=103.9
Q ss_pred CCCCeEEEEEcCcEEEEEECCeEEEEcCccCCCcccccccccccCccccCccCCCCCCCccEEEEeCCCCCCCChhhHHH
Q 027321 75 ATDVFKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKP 154 (225)
Q Consensus 75 ~~~~~~it~lGhss~lI~~~g~~ILiDP~~s~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~ 154 (225)
....|+|||+||||++|+.++++|||||++++..+ +..+-+ .....+++++|+|+|||+|+||+|..++..
T Consensus 3 ~~~~m~itwlGha~~lie~~~~~iliDP~~~~~~~-~~~~~~--------~~~~~~~~~~D~ilitH~H~DHl~~~~~~~ 73 (258)
T COG2220 3 SAEDMKITWLGHAAFLIETGGKRILIDPVLSGAPS-PSNFPG--------GLFEDLLPPIDYILITHDHYDHLDDETLIA 73 (258)
T ss_pred CCcCceEEEecceEEEEEECCEEEEECcccCCCCC-cccccC--------cCChhhcCCCCEEEEeCCCccccCHHHHHH
Confidence 35689999999999999999999999999998766 322110 112456778999999999999999888888
Q ss_pred hhhcCCCcEEEEccchHHHHhhh---cCCCeEcCCCceEEECCCEEEEEEecCCcC------------CCCCeEEEEeCC
Q 027321 155 LSKMSPNLKVIATPNAKTLLDPL---FQNNPVRALKLKVEMVPNSESKRLLAQFWV------------LPGNALRMGISS 219 (225)
Q Consensus 155 L~~~~p~~~v~~~~~~~~~L~~~---~~~i~~l~~~e~~~~~~~l~i~~~p~~h~~------------~~~~Gy~l~~~~ 219 (225)
+... +...++++......+.++ ..++.+++||+.+++++ ++|+++++.|++ ...+||+|+..|
T Consensus 74 ~~~~-~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi~~~g 151 (258)
T COG2220 74 LRTN-KAPVVVVPLGAGDLLIRDGVEAERVHELGWGDVIELGD-LEITAVPAYHVSARHLPGRGIRPTGLWVGYVIETPG 151 (258)
T ss_pred HhcC-CCcEEEeHHHHHHHHHhcCCCcceEEeecCCceEEecC-cEEEEEEeecccccccCCCCccccCCceEEEEEeCC
Confidence 7743 234455555565666555 35699999999999997 999999998872 225689999986
No 2
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=99.89 E-value=1.5e-22 Score=182.21 Aligned_cols=144 Identities=13% Similarity=0.003 Sum_probs=108.6
Q ss_pred cCCCCeEEEEEcCcEEEEEE-CCeEEEEcCccCCCcc--c--c--------cccccccCc---ccc-C-ccCCCCCCCcc
Q 027321 74 VATDVFKLTYLEGNSWLWDL-DGVKVLVDPILVGNLD--F--G--------IPWLFDAGK---KFL-K-SFQLSDLPQVD 135 (225)
Q Consensus 74 ~~~~~~~it~lGhss~lI~~-~g~~ILiDP~~s~~~~--~--p--------~~~~~~~~~---~~~-~-~~~~~~lp~iD 135 (225)
..+++++++||||||++|+. +|.+||||+|++ +++ . | ....+..+. .|. + +++.+++++||
T Consensus 33 ~~~~~~~~~wlG~a~~li~~~~g~~ILiD~~~~-~g~~~~~~~~~~~~~~~~~~~G~~~~~P~lr~~p~~idp~~i~~ID 111 (355)
T PRK11709 33 VPPGTFAMWWLGCTGIWLKTEGGTNVCVDLWCG-TGKQTHGNPLMKRGHQMARMAGVRKLQPNLRTQPFVLDPFAIREID 111 (355)
T ss_pred cCCCcEEEEEecceEEEEEcCCCcEEEEeecCC-CCCccccccccccccchhhhccccccCCCCCCCCcccCHHHCCCCC
Confidence 35688999999999999998 689999998765 321 0 1 112221100 111 1 45667899999
Q ss_pred EEEEeCCCCCCCChhhHHHhhhcC-CCcEEEEccchHHHHhhh-c--CCCeEcCCCceEEECCCEEEEEEecC-------
Q 027321 136 CLLITQSLDDHCHLKTLKPLSKMS-PNLKVIATPNAKTLLDPL-F--QNNPVRALKLKVEMVPNSESKRLLAQ------- 204 (225)
Q Consensus 136 ~VlISH~H~DHld~~tl~~L~~~~-p~~~v~~~~~~~~~L~~~-~--~~i~~l~~~e~~~~~~~l~i~~~p~~------- 204 (225)
+|||||.|+||+|..+++.+.++. ++++++++.++..+++.+ . .++++++|||++++++ ++|+++|+.
T Consensus 112 aVLiTH~H~DHlD~~tl~~l~~~~~~~~~~v~p~~~~~~~~~~Gvp~~rv~~v~~Ge~i~ig~-v~It~lpa~h~~~~i~ 190 (355)
T PRK11709 112 AVLATHDHSDHIDVNVAAAVLQNCADHVKFIGPQACVDLWIGWGVPKERCIVVKPGDVVKVKD-IKIHALDSFDRTALVT 190 (355)
T ss_pred EEEECCCcccccChHHHHHHHhhcCCCcEEEEcHHHHHHHHhcCCCcceEEEecCCCcEEECC-EEEEEEeccccccccc
Confidence 999999999999998999887754 367888888888887776 3 5799999999999997 999999994
Q ss_pred ----CcCC----------CCCeEEEEeCC
Q 027321 205 ----FWVL----------PGNALRMGISS 219 (225)
Q Consensus 205 ----h~~~----------~~~Gy~l~~~~ 219 (225)
|++. ...||+|+.+|
T Consensus 191 ~p~~h~~~~~~~~~d~~~~~~gyvie~~~ 219 (355)
T PRK11709 191 LPADGKAAGGVLPDDMDRRAVNYLFKTPG 219 (355)
T ss_pred cccccccccccccccCCcceEEEEEEeCC
Confidence 4432 23689998766
No 3
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.88 E-value=6.9e-22 Score=166.67 Aligned_cols=122 Identities=24% Similarity=0.306 Sum_probs=97.7
Q ss_pred eEEEEEcCcEEEEEECCeEEEEcCccCCCcccccccccccCccccCccCCCCCCCccEEEEeCCCCCCCChhhHHHhhhc
Q 027321 79 FKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKM 158 (225)
Q Consensus 79 ~~it~lGhss~lI~~~g~~ILiDP~~s~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~~ 158 (225)
|+|+||||||++|+.+|.+|||||++++... ..+ ..++. ++|+|||||.|+||++ .... +.++
T Consensus 1 m~i~~lG~s~~li~~~~~~iLiDP~~~~~~~---~~~-----------~~~~~-~id~vliTH~H~DH~~-~~~~-~~~~ 63 (228)
T PRK00685 1 MKITWLGHSAFLIETGGKKILIDPFITGNPL---ADL-----------KPEDV-KVDYILLTHGHGDHLG-DTVE-IAKR 63 (228)
T ss_pred CEEEEEcceEEEEEECCEEEEECCCCCCCCC---CCC-----------ChhcC-cccEEEeCCCCccccc-cHHH-HHHh
Confidence 7899999999999999999999999875322 111 12333 8999999999999997 3333 4333
Q ss_pred CCCcEEEEccchHHHHhhh-cCCCeEcCCCceEEECCCEEEEEEecCCcCCC-----------CCeEEEEeCC
Q 027321 159 SPNLKVIATPNAKTLLDPL-FQNNPVRALKLKVEMVPNSESKRLLAQFWVLP-----------GNALRMGISS 219 (225)
Q Consensus 159 ~p~~~v~~~~~~~~~L~~~-~~~i~~l~~~e~~~~~~~l~i~~~p~~h~~~~-----------~~Gy~l~~~~ 219 (225)
+++++|++..+...+++. +.++.++++++++++++ ++|+++|+.|+..+ .+||+++.++
T Consensus 64 -~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~p~~H~~~~~~~~~~~~~~~~~g~~i~~~~ 134 (228)
T PRK00685 64 -TGATVIANAELANYLSEKGVEKTHPMNIGGTVEFDG-GKVKLTPALHSSSFIDEDGITYLGNPTGFVITFEG 134 (228)
T ss_pred -CCCEEEEeHHHHHHHHhcCCCceeeccCCCcEEECC-EEEEEEEEEcCCCCcCCCCcccCCCceEEEEEECC
Confidence 378999998888888766 66788999999999997 99999999998654 4899998765
No 4
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=99.79 E-value=1.6e-19 Score=152.85 Aligned_cols=129 Identities=22% Similarity=0.293 Sum_probs=105.4
Q ss_pred CCCeEEEEEcCcEEEEEECCeEEEEcCccCCCcccccccccccCccccC--ccCCCCCCCccEEEEeCCCCCCCChhhHH
Q 027321 76 TDVFKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLK--SFQLSDLPQVDCLLITQSLDDHCHLKTLK 153 (225)
Q Consensus 76 ~~~~~it~lGhss~lI~~~g~~ILiDP~~s~~~~~p~~~~~~~~~~~~~--~~~~~~lp~iD~VlISH~H~DHld~~tl~ 153 (225)
..++--|||||||.++..+|.++++||+|+.+++|. -++ ++|+. +..++++|.+|.+++||+||||+|..+++
T Consensus 78 ~~~~~~twlg~a~~~~~~~g~~~~tdpvf~d~~if~--s~g---Pkry~~pp~~~~~~p~~d~~~vsh~h~dhld~~~~~ 152 (343)
T KOG3798|consen 78 ESDLFATWLGHATVLVDLEGVKFVTDPVWADRASFT--SFG---PKRYRPPPMKLEDLPDLDFAVVSHDHYDHLDADAVK 152 (343)
T ss_pred cCcHHHhhhcceeEEEeccCcEEecchhhccchhhc--ccC---cccccCCchhhccCCCCceeccccccccccchHHHH
Confidence 345668999999999999999999999999988742 234 24443 66789999999999999999999999999
Q ss_pred HhhhcCCCcEEEEccchHHHHhhh-cCCCeEcCCCceEEECC---CEEEEEEecCCcCCCC
Q 027321 154 PLSKMSPNLKVIATPNAKTLLDPL-FQNNPVRALKLKVEMVP---NSESKRLLAQFWVLPG 210 (225)
Q Consensus 154 ~L~~~~p~~~v~~~~~~~~~L~~~-~~~i~~l~~~e~~~~~~---~l~i~~~p~~h~~~~~ 210 (225)
.+..+.+.+ .|++.+...++... ...+.++.||++.++-. .++|.++|+|||++|.
T Consensus 153 ~~~~~~~~~-wfvp~g~k~~m~~~gc~~v~el~wwe~~~~vkn~~~~ti~~tPaqHw~~R~ 212 (343)
T KOG3798|consen 153 KITDRNPQI-WFVPLGMKKWMEGDGSSTVTELNWGESSEFVKNGKTYTIWCLPAQHWGQRG 212 (343)
T ss_pred hhhccCccc-eeehhhhhheecCCCCCceeEeeccchhceecCCcEEEEEEcchhhhcccc
Confidence 998887656 77777777666655 56789999998877632 5889999999998874
No 5
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=99.78 E-value=8.5e-19 Score=141.15 Aligned_cols=100 Identities=23% Similarity=0.294 Sum_probs=73.1
Q ss_pred EEEEEcCcEEEEEECCeEEEEcCccCCCcccccccccccCccccCccCCCCCCCccEEEEeCCCCCCCChhhHHHhhhcC
Q 027321 80 KLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMS 159 (225)
Q Consensus 80 ~it~lGhss~lI~~~g~~ILiDP~~s~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~~~ 159 (225)
+|||+|||||+|+.+|++||+|||... .. +. ....++|+|+|||.|+||++.++++++.
T Consensus 1 ~It~lgha~~~ie~~g~~iliDP~~~~-~~----~~-------------~~~~~~D~IlisH~H~DH~~~~~l~~~~--- 59 (163)
T PF13483_consen 1 KITWLGHASFLIETGGKRILIDPWFSS-VG----YA-------------PPPPKADAILISHSHPDHFDPETLKRLD--- 59 (163)
T ss_dssp EEEEEETTEEEEEETTEEEEES--TTT-------T--------------TSS-B-SEEEESSSSTTT-CCCCCCCHH---
T ss_pred CEEEEEeeEEEEEECCEEEEECCCCCc-cC----cc-------------cccCCCCEEEECCCccccCChhHhhhcc---
Confidence 699999999999999999999998652 11 10 1114789999999999999977766552
Q ss_pred CCcEEEEccchHHHHhhhcCCCeEcCCCceEEECCCEEEEEEecCCc------CCCCCeEEEEeCCe
Q 027321 160 PNLKVIATPNAKTLLDPLFQNNPVRALKLKVEMVPNSESKRLLAQFW------VLPGNALRMGISSI 220 (225)
Q Consensus 160 p~~~v~~~~~~~~~L~~~~~~i~~l~~~e~~~~~~~l~i~~~p~~h~------~~~~~Gy~l~~~~~ 220 (225)
.++..+.+++++++++ ++|+++++.|. ....+||+++.+|.
T Consensus 60 -------------------~~~~vv~~~~~~~~~~-~~i~~v~~~~~~~~~~~~~~~~~~~i~~~g~ 106 (163)
T PF13483_consen 60 -------------------RDIHVVAPGGEYRFGG-FKITAVPAYHDGPGGHPRGENVGYLIEVGGV 106 (163)
T ss_dssp -------------------TSSEEE-TTEEEECTT-EEEEEEEEEE-STGTS-TTCCEEEEEEETTE
T ss_pred -------------------cccEEEccceEEEEee-eEEEEEeeeccccCCCCcCCeEEEEEEeCCC
Confidence 3456677789999997 99999999885 34467999999765
No 6
>PRK02113 putative hydrolase; Provisional
Probab=99.38 E-value=3.2e-12 Score=109.59 Aligned_cols=112 Identities=21% Similarity=0.210 Sum_probs=81.7
Q ss_pred CcEEEEEECCeEEEEcCccCCCcccccccccccCccccCccCCCCCCCccEEEEeCCCCCCCC-hhhHHHhhhcCCCcEE
Q 027321 86 GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCH-LKTLKPLSKMSPNLKV 164 (225)
Q Consensus 86 hss~lI~~~g~~ILiDP~~s~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld-~~tl~~L~~~~p~~~v 164 (225)
.+|++|+.+|..||||+ |... ..+++ ...+.++|+|+|||.|+||+. +..+..+.+. ..++|
T Consensus 35 ~~s~li~~~~~~iLiD~---G~g~-~~~l~------------~~~~~~id~I~lTH~H~DH~~gl~~l~~~~~~-~~~~i 97 (252)
T PRK02113 35 RTSALVETEGARILIDC---GPDF-REQML------------RLPFGKIDAVLITHEHYDHVGGLDDLRPFCRF-GEVPI 97 (252)
T ss_pred eeEEEEEECCeEEEEEC---CchH-HHHHH------------hcCccccCEEEECCCChhhhCCHHHHHHhccC-CCceE
Confidence 58899999999999997 4222 11111 113458999999999999994 4445444332 36899
Q ss_pred EEccchHHHHhhh----c----------CCCeEcCCCceEEECCCEEEEEEecCCcCCCCCeEEE
Q 027321 165 IATPNAKTLLDPL----F----------QNNPVRALKLKVEMVPNSESKRLLAQFWVLPGNALRM 215 (225)
Q Consensus 165 ~~~~~~~~~L~~~----~----------~~i~~l~~~e~~~~~~~l~i~~~p~~h~~~~~~Gy~l 215 (225)
|++..+.+.++.. + .++.++++++.+++++ ++|++++..|-.....||++
T Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~i~~~~~~H~~~~~~gy~i 161 (252)
T PRK02113 98 YAEQYVAERLRSRMPYCFVEHSYPGVPNIPLREIEPDRPFLVNH-TEVTPLRVMHGKLPILGYRI 161 (252)
T ss_pred EECHHHHHHHHhhCCeeeccCCCCCCcceeeEEcCCCCCEEECC-eEEEEEEecCCCccEEEEEe
Confidence 9999877776543 0 1367888999999997 99999999997666678888
No 7
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.37 E-value=6.7e-12 Score=107.74 Aligned_cols=112 Identities=16% Similarity=0.116 Sum_probs=76.7
Q ss_pred CcEEEEEECCeEEEEcCccCCCcccccccccccCccccCccCCCCCCCccEEEEeCCCCCCCChhhHHHhhh-cCCCcEE
Q 027321 86 GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSK-MSPNLKV 164 (225)
Q Consensus 86 hss~lI~~~g~~ILiDP~~s~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~-~~p~~~v 164 (225)
.+|++|+.++..||||+... . +. +++ +..++|+|+|||.|.||++ ++..+.. +.+.+++
T Consensus 37 ~~s~li~~~~~~iLiD~G~~---~-----~~----~~~------~~~~i~~i~iTH~H~DHi~--gl~~l~~~~~~~i~i 96 (250)
T PRK11244 37 PCSALIEFNGARTLIDAGLP---D-----LA----ERF------PPGSLQQILLTHYHMDHVQ--GLFPLRWGVGDPIPV 96 (250)
T ss_pred eeEEEEEECCCEEEEECCCh---H-----Hh----hcC------CcccCCEEEEccCchhhhc--cHHHHHhhcCCceeE
Confidence 47889999999999998421 1 11 111 1237999999999999994 2333321 2236889
Q ss_pred EEccchHHH---Hhhh-cCCC-eEcCCCceEEECCCEEEEEEecCCcCCCCCeEEEEeCC
Q 027321 165 IATPNAKTL---LDPL-FQNN-PVRALKLKVEMVPNSESKRLLAQFWVLPGNALRMGISS 219 (225)
Q Consensus 165 ~~~~~~~~~---L~~~-~~~i-~~l~~~e~~~~~~~l~i~~~p~~h~~~~~~Gy~l~~~~ 219 (225)
|++...... ++.. ..+. ..+++++++++++ ++|+++|..|- ....||+++.++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~I~~~~~~H~-~~s~g~~i~~~~ 154 (250)
T PRK11244 97 YGPPDPEGCDDLFKHPGILDFSHPLEPFEPFDLGG-LQVTPLPLNHS-KLTFGYLLETAH 154 (250)
T ss_pred EeCCchhhHHHHhcCccccccccccCCCCCeeECC-EEEEEEeeCCC-cceeEEEEecCC
Confidence 998864322 2211 1122 3578999999997 99999999994 457899998765
No 8
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.27 E-value=4.4e-11 Score=101.85 Aligned_cols=112 Identities=16% Similarity=0.107 Sum_probs=75.8
Q ss_pred CcEEEEEECCeEEEEcCccCCCcccccccccccCccccCccCCCCCCCccEEEEeCCCCCCCChhhHHHhhh-cCCCcEE
Q 027321 86 GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSK-MSPNLKV 164 (225)
Q Consensus 86 hss~lI~~~g~~ILiDP~~s~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~-~~p~~~v 164 (225)
.+|++|+.+|..||||+.+. . +. +. .+..++|+|+|||.|.||++ .+..+.. ....++|
T Consensus 27 ~~s~~i~~~~~~iliD~G~~---~-----~~----~~------~~~~~id~i~iTH~H~DHi~--gl~~l~~~~~~~~~v 86 (238)
T TIGR03307 27 PCSAVIEFNGARTLIDAGLT---D-----LA----ER------FPPGSLQAILLTHYHMDHVQ--GLFPLRWGVGEPIPV 86 (238)
T ss_pred ceEEEEEECCcEEEEECCCh---h-----Hh----hc------cCccCCCEEEEecCchhhhc--chHHHHHhcCCceeE
Confidence 47788999999999998422 1 11 11 12237899999999999994 2322322 1235889
Q ss_pred EEccchHHHHhhh----cCCC-eEcCCCceEEECCCEEEEEEecCCcCCCCCeEEEEeCC
Q 027321 165 IATPNAKTLLDPL----FQNN-PVRALKLKVEMVPNSESKRLLAQFWVLPGNALRMGISS 219 (225)
Q Consensus 165 ~~~~~~~~~L~~~----~~~i-~~l~~~e~~~~~~~l~i~~~p~~h~~~~~~Gy~l~~~~ 219 (225)
|+++.+....... ..+. .++.+++.+++++ ++|+++|..|- ....||+|+..+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~H~-~~~~g~~i~~~~ 144 (238)
T TIGR03307 87 YGPPDEEGCDDLFKHPGILDFSKPLEAFEPFDLGG-LRVTPLPLVHS-KLTFGYLLETDG 144 (238)
T ss_pred EeCchHhhHHHHhcCcccccccccccCCceEEECC-EEEEEEecCCC-CcceEEEEecCC
Confidence 9988753222111 1122 3478899999997 99999999995 346899998765
No 9
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.26 E-value=7.1e-12 Score=102.19 Aligned_cols=89 Identities=20% Similarity=0.225 Sum_probs=70.5
Q ss_pred CCCCCccEEEEeCCCCCC-CChhhHHHhhhcCCCcEEEEccchHHHHh--hh-c---------CCCeEcCCCceEEECCC
Q 027321 129 SDLPQVDCLLITQSLDDH-CHLKTLKPLSKMSPNLKVIATPNAKTLLD--PL-F---------QNNPVRALKLKVEMVPN 195 (225)
Q Consensus 129 ~~lp~iD~VlISH~H~DH-ld~~tl~~L~~~~p~~~v~~~~~~~~~L~--~~-~---------~~i~~l~~~e~~~~~~~ 195 (225)
++++++|+|+|||.|+|| +|+.++.......+. ++|+++.+.+.++ .+ . ..+.++..++.+++++
T Consensus 25 ~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~-~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 102 (194)
T PF12706_consen 25 EDLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPK-PIYGPPETKEFLREYKFGILDLYPEEDNFDIIEISPGDEFEIGD- 102 (194)
T ss_dssp SSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTT-EEEECHHHHHHHHHHHHTHHTTCCTTSGEEEEEECTTEEEEETT-
T ss_pred cccCCCCEEEECCCCccccCChHHHHHHhhcccc-eEEecHHHHHHHHhhhcccccccccccceeEEEeccCceEEece-
Confidence 355699999999999999 788788777766545 8999999888887 43 1 2467888889999997
Q ss_pred EEEEEEecCCcCCCCC---eEEEEeCC
Q 027321 196 SESKRLLAQFWVLPGN---ALRMGISS 219 (225)
Q Consensus 196 l~i~~~p~~h~~~~~~---Gy~l~~~~ 219 (225)
++|+++|+.|...... ||+++.++
T Consensus 103 ~~i~~~~~~H~~~~~~~~~g~~i~~~~ 129 (194)
T PF12706_consen 103 FRITPFPANHGPPSYGGNKGFVIEPDG 129 (194)
T ss_dssp EEEEEEEEESSSCCEEECCEEEEEETT
T ss_pred EEEEEEeccccccccccCceEEEecCC
Confidence 9999999999866544 49998654
No 10
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.25 E-value=3.1e-11 Score=105.78 Aligned_cols=119 Identities=16% Similarity=0.064 Sum_probs=81.7
Q ss_pred cCcEEEEEECCeEEEEcCccCCCcccccccccccCccccCccCCCCCCCccEEEEeCCCCCCC-ChhhHHHh---hhcCC
Q 027321 85 EGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHC-HLKTLKPL---SKMSP 160 (225)
Q Consensus 85 Ghss~lI~~~g~~ILiDP~~s~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHl-d~~tl~~L---~~~~p 160 (225)
+++|++|+.++.+||||+ |... ...+. +. ..++.++|+|+|||.|.||+ +...+... ..+..
T Consensus 17 ~~~~~~v~~~~~~iLiD~---G~g~--~~~l~-----~~----~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~~~ 82 (299)
T TIGR02651 17 NLPSIALKLNGELWLFDC---GEGT--QRQML-----RS----GISPMKIDRIFITHLHGDHILGLPGLLSTMSFQGRKE 82 (299)
T ss_pred CCceEEEEECCeEEEEEC---CHHH--HHHHH-----Hc----CCCHHHCcEEEEECCchhhhcChHHHHHhhccCCCCc
Confidence 478999999999999997 3222 11110 00 11334799999999999999 44444321 11112
Q ss_pred CcEEEEccchHHHHhhh--c--------CCCeEcCCCc-eEEECCCEEEEEEecCCcCCCCCeEEEEeCC
Q 027321 161 NLKVIATPNAKTLLDPL--F--------QNNPVRALKL-KVEMVPNSESKRLLAQFWVLPGNALRMGISS 219 (225)
Q Consensus 161 ~~~v~~~~~~~~~L~~~--~--------~~i~~l~~~e-~~~~~~~l~i~~~p~~h~~~~~~Gy~l~~~~ 219 (225)
.++||+++.+.+.++.. . -++.++.+++ .+..++ ++|+++|..|. ....||+|+..+
T Consensus 83 ~i~Iy~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~H~-~~~~gy~i~~~~ 150 (299)
T TIGR02651 83 PLTIYGPPGIKEFIETSLRVSYTYLNYPIKIHEIEEGGLVFEDDG-FKVEAFPLDHS-IPSLGYRFEEKD 150 (299)
T ss_pred eEEEECCccHHHHHHHHHHHcccCCCceEEEEEccCCCceEecCC-EEEEEEEcCCC-CceEEEEEEECC
Confidence 57899999887777653 1 1356788887 588876 99999999994 567899999764
No 11
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.21 E-value=1e-10 Score=107.79 Aligned_cols=128 Identities=13% Similarity=0.063 Sum_probs=85.0
Q ss_pred EcCcEEEEEECCeEEEEcCccCCCccccc-ccccccC-ccccCccCCCCCCCccEEEEeCCCCCCCChhhHHHhhhcCCC
Q 027321 84 LEGNSWLWDLDGVKVLVDPILVGNLDFGI-PWLFDAG-KKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPN 161 (225)
Q Consensus 84 lGhss~lI~~~g~~ILiDP~~s~~~~~p~-~~~~~~~-~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~~~p~ 161 (225)
+|.||++|+.++..||||+...- +. ..++-.. ...+..+ .+...++|+|+|||.|.||+. .+..|.+..+.
T Consensus 12 iG~n~~ll~~~~~~iliD~G~~~----~~~~~~g~~~~iPd~~~l-~~~~~~i~~I~iTH~H~DHig--gl~~l~~~~~~ 84 (422)
T TIGR00649 12 IGKNMYVVEIDDDVFIFDAGILF----PEDAMLGVDGVIPDFSYL-QENQDKVKGIFITHGHEDHIG--AVPYLFHTVGF 84 (422)
T ss_pred cCCeEEEEEECCeEEEEeCCCCC----CcccccCCccccCCHHHH-HhccccCCEEEECCCChHHhC--cHHHHHHhCCC
Confidence 35799999999999999985321 11 1110000 0000001 112348999999999999994 56666665544
Q ss_pred cEEEEccchHHHHhhh-----c---CCCeEcCCCceEEECCCEEEEEEecCCcCCCCCeEEEEeC
Q 027321 162 LKVIATPNAKTLLDPL-----F---QNNPVRALKLKVEMVPNSESKRLLAQFWVLPGNALRMGIS 218 (225)
Q Consensus 162 ~~v~~~~~~~~~L~~~-----~---~~i~~l~~~e~~~~~~~l~i~~~p~~h~~~~~~Gy~l~~~ 218 (225)
.++|+++.....++.. . .++.+++.++.++++++++|+++++.|-.....||+++..
T Consensus 85 ~~Vy~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~v~~~~~~H~~p~s~g~~i~~~ 149 (422)
T TIGR00649 85 PPIYGTPLTIALIKSKIKENKLNVRTDLLEIHEGEPIETGENHTIEFIRITHSIPDSVGFALHTP 149 (422)
T ss_pred CeEEeCHHHHHHHHHHHHhcCCCCCCceEEeCCCCEEEeCCceEEEEEECCCCCcceEEEEEEeC
Confidence 7899999877776542 1 2467788899999963499999999995444567777654
No 12
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.21 E-value=9.5e-11 Score=93.85 Aligned_cols=123 Identities=21% Similarity=0.146 Sum_probs=81.6
Q ss_pred EEEcCcEEEEEECCeEEEEcCccCCCcccccccccccCccccCccCCCCCCCccEEEEeCCCCCCCChhhHHHhhhcCCC
Q 027321 82 TYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPN 161 (225)
Q Consensus 82 t~lGhss~lI~~~g~~ILiDP~~s~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~~~p~ 161 (225)
.+.+++|++|+.++..+||||..... ...+ +.+.. . ...++|+|+|||.|.||++ .+..+.++ ++
T Consensus 2 ~~~~~~~~li~~~~~~iliD~g~~~~----~~~~-----~~l~~--~-~~~~i~~i~iTH~H~DH~~--g~~~~~~~-~~ 66 (183)
T smart00849 2 GGVGVNSYLVEGDGGAILIDTGPGEA----EDLL-----AELKK--L-GPKDIDAIILTHGHPDHIG--GLPELLEA-PG 66 (183)
T ss_pred CccceeEEEEEeCCceEEEeCCCChh----HHHH-----HHHHH--c-CchhhcEEEecccCcchhc--cHHHHHhC-CC
Confidence 35689999999999999999863321 1111 00111 1 1448999999999999995 56666655 57
Q ss_pred cEEEEccchHHHHhh---------h----cCCCeEcCCCceEEECCCEEEEEEec-CCcCCCCCeEEEEeCCee
Q 027321 162 LKVIATPNAKTLLDP---------L----FQNNPVRALKLKVEMVPNSESKRLLA-QFWVLPGNALRMGISSIL 221 (225)
Q Consensus 162 ~~v~~~~~~~~~L~~---------~----~~~i~~l~~~e~~~~~~~l~i~~~p~-~h~~~~~~Gy~l~~~~~~ 221 (225)
+++|++....+.++. . ..++..+..++++++++ .+++.++. .|+.. ..+|.++...+|
T Consensus 67 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~-~~~~~~~~~~vl 138 (183)
T smart00849 67 APVYAPEGTAELLKDLLKLGGALGAEAPPPPPDRTLKDGEELDLGG-LELEVIHTPGHTPG-SIVLYLPEGKIL 138 (183)
T ss_pred CcEEEchhhhHHHhccchhccccCcCCCCCccceecCCCCEEEeCC-ceEEEEECCCCCCC-cEEEEECCCCEE
Confidence 899999887777762 1 23567788999999986 66655554 24432 445666553343
No 13
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.18 E-value=1.2e-10 Score=106.55 Aligned_cols=111 Identities=22% Similarity=0.189 Sum_probs=76.9
Q ss_pred CcEEEEEECCeEEEEcCccCCCcccccccccccCccccCccCCCCCCCccEEEEeCCCCCCCChhhHHHhhhcCCCcEEE
Q 027321 86 GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVI 165 (225)
Q Consensus 86 hss~lI~~~g~~ILiDP~~s~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~~~p~~~v~ 165 (225)
-|||+|+. +..+|||++..... -.++ ..+. ...++.+||+|++||.|.||++ ++..+.+++|+++++
T Consensus 33 ~NsyLI~~-~~~vLIDtg~~~~~---~~~~-----~~l~--~~~~~~~Id~IilTH~H~DHig--gl~~l~~~~p~a~V~ 99 (394)
T PRK11921 33 YNSYLIKD-EKTVLIDTVWQPFA---KEFV-----ENLK--KEIDLDKIDYIVANHGEIDHSG--ALPELMKEIPDTPIY 99 (394)
T ss_pred EEEEEEeC-CCEEEEeCCCCCcH---HHHH-----HHHH--hhcCcccCCEEEeCCCCCchhh--HHHHHHHHCCCCEEE
Confidence 48999975 67899999653211 1111 1111 0113347999999999999995 678888888899999
Q ss_pred EccchHHHHhhhc---CCCeEcCCCceEEECC-CEEEEEEecCCcCCC
Q 027321 166 ATPNAKTLLDPLF---QNNPVRALKLKVEMVP-NSESKRLLAQFWVLP 209 (225)
Q Consensus 166 ~~~~~~~~L~~~~---~~i~~l~~~e~~~~~~-~l~i~~~p~~h~~~~ 209 (225)
+++.....+...+ .++..+..++++++++ .+++..+|+.||+..
T Consensus 100 ~~~~~~~~l~~~~~~~~~~~~v~~g~~l~lG~~~l~~i~tP~~H~p~~ 147 (394)
T PRK11921 100 CTKNGAKSLKGHYHQDWNFVVVKTGDRLEIGSNELIFIEAPMLHWPDS 147 (394)
T ss_pred ECHHHHHHHHHHhCCCCceEEeCCCCEEeeCCeEEEEEeCCCCCCCCc
Confidence 9988766665431 2456788999999987 344555587798653
No 14
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.16 E-value=2.3e-10 Score=101.31 Aligned_cols=118 Identities=19% Similarity=0.069 Sum_probs=78.1
Q ss_pred CcEEEEEECC-eEEEEcCccCCCcccccccccccCccccCccCC---CCCCCccEEEEeCCCCCCCChhhHHHhhhcCCC
Q 027321 86 GNSWLWDLDG-VKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQL---SDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPN 161 (225)
Q Consensus 86 hss~lI~~~g-~~ILiDP~~s~~~~~p~~~~~~~~~~~~~~~~~---~~lp~iD~VlISH~H~DHld~~tl~~L~~~~p~ 161 (225)
.+|++|+.+| .+||||. |... ..+.. +...+.. -.+.++|+|+|||.|+||+. .|..|... ..
T Consensus 39 ~ss~li~~~g~~~iLiD~---G~g~-~~ql~------~~~~~~~~~g~~~~~ldav~lTH~H~DHi~--Gl~~l~~~-~~ 105 (302)
T PRK05184 39 QSSIAVSADGEDWVLLNA---SPDI-RQQIQ------ATPALQPARGLRDTPIAAVVLTDGQIDHTT--GLLTLREG-QP 105 (302)
T ss_pred ccEEEEEcCCCEEEEEEC---ChhH-HHHHH------hchhcCccccCCcccccEEEEeCCchhhhh--ChHhhccC-CC
Confidence 5889998766 4699995 4322 11111 1100111 13447999999999999993 45555544 36
Q ss_pred cEEEEccchHHHHhhh---c---C-----CCeEcCCCceEEEC--CCEEEEEEecCCc------------CCCCCeEEEE
Q 027321 162 LKVIATPNAKTLLDPL---F---Q-----NNPVRALKLKVEMV--PNSESKRLLAQFW------------VLPGNALRMG 216 (225)
Q Consensus 162 ~~v~~~~~~~~~L~~~---~---~-----~i~~l~~~e~~~~~--~~l~i~~~p~~h~------------~~~~~Gy~l~ 216 (225)
++||+++.+.+.+++. + . ++.++..++.++++ ++++|+++|..|- +....||+|+
T Consensus 106 l~Vyg~~~~~~~l~~~~~~f~~~~~~~~~~~~~i~~~~~~~i~~~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gyri~ 185 (302)
T PRK05184 106 FPVYATPAVLEDLSTGFPIFNVLDHYGGVQRRPIALDGPFAVPGLPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIGLRIE 185 (302)
T ss_pred eEEEeCHHHHHHHHhcCCcccccccccceeeEEecCCCceEecCCCCcEEEEEEcCCCCCcccccccCCCCCCeEEEEEE
Confidence 8999999877776553 1 1 24567778888886 2399999999763 2446799995
No 15
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.12 E-value=2e-10 Score=103.87 Aligned_cols=109 Identities=18% Similarity=0.202 Sum_probs=84.1
Q ss_pred cEEEEEECCeEEEEcCccCCCcccccccccccCccccCccCCCCCCCccEEEEeCCCCCCCChhhHHHhhhcCCCcEEEE
Q 027321 87 NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIA 166 (225)
Q Consensus 87 ss~lI~~~g~~ILiDP~~s~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~~~p~~~v~~ 166 (225)
|||||+ +++++||||+-.+ . --.++ .+++ ..-++.+||+|+++|..+||. .+|..|.+.+|++++++
T Consensus 37 NSYLI~-~~k~aLID~~~~~--~-~~~~l-----~~l~--~~id~k~iDYIi~~H~ePDhs--g~l~~ll~~~p~a~ii~ 103 (388)
T COG0426 37 NSYLIV-GDKTALIDTVGEK--F-FDEYL-----ENLS--KYIDPKEIDYIIVNHTEPDHS--GSLPELLELAPNAKIIC 103 (388)
T ss_pred eeEEEe-CCcEEEECCCCcc--h-HHHHH-----HHHH--hhcChhcCeEEEECCCCcchh--hhHHHHHHhCCCCEEEe
Confidence 999999 9999999995322 1 11122 1211 134555799999999999999 48999999999999999
Q ss_pred ccchHHHHhhh-c--CCCeEcCCCceEEECC-CEEEEEEecCCcCC
Q 027321 167 TPNAKTLLDPL-F--QNNPVRALKLKVEMVP-NSESKRLLAQFWVL 208 (225)
Q Consensus 167 ~~~~~~~L~~~-~--~~i~~l~~~e~~~~~~-~l~i~~~p~~h~~~ 208 (225)
+....+.|+.. . ..+..++.|+++.+|+ .+++..+|-.||+.
T Consensus 104 s~~~~~~L~~~~~~~~~~~ivk~Gd~ldlGg~tL~Fi~ap~LHWPd 149 (388)
T COG0426 104 SKLAARFLKGFYHDPEWFKIVKTGDTLDLGGHTLKFIPAPFLHWPD 149 (388)
T ss_pred eHHHHHHHHHhcCCccceeecCCCCEeccCCcEEEEEeCCCCCCCC
Confidence 99999999887 2 2278899999999997 46666677789943
No 16
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.11 E-value=7.4e-10 Score=106.83 Aligned_cols=120 Identities=18% Similarity=0.190 Sum_probs=82.5
Q ss_pred CCeEEEEEcC------cEEEEEECCeEEEEcCccCCCcccccccccccCccccCccCC--CCCCCccEEEEeCCCCCCCC
Q 027321 77 DVFKLTYLEG------NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQL--SDLPQVDCLLITQSLDDHCH 148 (225)
Q Consensus 77 ~~~~it~lGh------ss~lI~~~g~~ILiDP~~s~~~~~p~~~~~~~~~~~~~~~~~--~~lp~iD~VlISH~H~DHld 148 (225)
+.|+|+.||+ ||++|+.++.+||+|+.+..... .. ..++-+.. .++.++|+|+|||.|.||++
T Consensus 173 ~~m~i~~LGg~~eVG~Sc~Ll~~~~~~ILIDcG~~~~~~-~~--------~~~p~l~~~~~~~~~IDaVlITHaH~DHiG 243 (630)
T TIGR03675 173 RWVRVTALGGFREVGRSALLLSTPESRILLDCGVNVGAN-GD--------NAYPYLDVPEFQLDELDAVVITHAHLDHSG 243 (630)
T ss_pred CeEEEEEEecCCccCCCEEEEEECCCEEEEECCCCcccc-ch--------hhcccccccCCCHHHCcEEEECCCCHHHHh
Confidence 4589999884 99999999999999985432110 00 01110111 12458999999999999996
Q ss_pred hhhHHHhhhcCCCcEEEEccchHHHHhh----h---------------------cCCCeEcCCCceEEECCCEEEEEEec
Q 027321 149 LKTLKPLSKMSPNLKVIATPNAKTLLDP----L---------------------FQNNPVRALKLKVEMVPNSESKRLLA 203 (225)
Q Consensus 149 ~~tl~~L~~~~p~~~v~~~~~~~~~L~~----~---------------------~~~i~~l~~~e~~~~~~~l~i~~~p~ 203 (225)
.+..|.+...+.+||++..+.++++. . ..+...++.++++++.+++++++.++
T Consensus 244 --~LP~L~k~g~~gpIY~T~pT~~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~i~~~i~vt~~~A 321 (630)
T TIGR03675 244 --LVPLLFKYGYDGPVYCTPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFYNA 321 (630)
T ss_pred --hHHHHHHhCCCCceeecHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeEEecCCEEEEEecC
Confidence 56666654336789998865443221 0 12467888999999864599999999
Q ss_pred CCcC
Q 027321 204 QFWV 207 (225)
Q Consensus 204 ~h~~ 207 (225)
-|..
T Consensus 322 GHil 325 (630)
T TIGR03675 322 GHIL 325 (630)
T ss_pred cccc
Confidence 9964
No 17
>PRK04286 hypothetical protein; Provisional
Probab=99.10 E-value=7.9e-10 Score=97.73 Aligned_cols=124 Identities=10% Similarity=-0.016 Sum_probs=69.9
Q ss_pred CcEEEEEECCeEEEEcCccCC--Cc-cc-ccccccccCccccC----ccCCCCCCCccEEEEeCCCCCCCChhhHHHh--
Q 027321 86 GNSWLWDLDGVKVLVDPILVG--NL-DF-GIPWLFDAGKKFLK----SFQLSDLPQVDCLLITQSLDDHCHLKTLKPL-- 155 (225)
Q Consensus 86 hss~lI~~~g~~ILiDP~~s~--~~-~~-p~~~~~~~~~~~~~----~~~~~~lp~iD~VlISH~H~DHld~~tl~~L-- 155 (225)
+||++|+.++.+|||||+.+- .. .+ |.+.. .+++. .+ .+.+.++|+|||||.|+||++.......
T Consensus 15 ~~~~~I~~~~~~iLID~G~~~~~~~~~~~~~~~~----~~~~~~~~~~i-~~~~~~id~IliTH~H~DHi~g~~~~~y~~ 89 (298)
T PRK04286 15 SMATFVETKDVRILIDPGVSLAPRRYGLPPHPIE----LERLEEVREKI-LEYAKKADVITISHYHYDHHTPFYEDPYEL 89 (298)
T ss_pred eeEEEEEECCeEEEEcCCCCcCccccCCCCcchh----HHHHHHHHHHh-hcccccCCEEEecCCccccCCCcccccccc
Confidence 499999999999999997431 10 00 11110 01111 11 3456689999999999999963222100
Q ss_pred -hhcCCCcEEEEccch-----------HHHH------hhh--cCCCeEcCCCceEEECCCEEEEEE-ecCCcCC-CCCeE
Q 027321 156 -SKMSPNLKVIATPNA-----------KTLL------DPL--FQNNPVRALKLKVEMVPNSESKRL-LAQFWVL-PGNAL 213 (225)
Q Consensus 156 -~~~~p~~~v~~~~~~-----------~~~L------~~~--~~~i~~l~~~e~~~~~~~l~i~~~-p~~h~~~-~~~Gy 213 (225)
.+++ .++++....+ .... ... ......+..++.+.+++ ++|+++ |..|-.. ..+||
T Consensus 90 ~~~~~-~i~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~~ig~-~~V~~~~~v~H~~~~~~~Gy 167 (298)
T PRK04286 90 SDEEI-PKEIYKGKIVLIKDPTENINWSQRRRAPRFLKAVKDIAKKIEYADGKTFRFGG-TTIEFSPPVPHGADGSKLGY 167 (298)
T ss_pred ccccc-hHHHhcCceecccCHHHHcCHHHHhhHHhHHHHHHhcCCceEECCCCEEEECC-EEEEEeccCCCCCCCCccce
Confidence 1111 1233332111 1111 111 12346677889999987 999977 6677543 56787
Q ss_pred EEE
Q 027321 214 RMG 216 (225)
Q Consensus 214 ~l~ 216 (225)
++.
T Consensus 168 ~i~ 170 (298)
T PRK04286 168 VIM 170 (298)
T ss_pred EEE
Confidence 663
No 18
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.03 E-value=1.7e-09 Score=95.81 Aligned_cols=123 Identities=16% Similarity=-0.013 Sum_probs=78.6
Q ss_pred CcEEEEEE-CCeEEEEcCccCCCcccccccccccCccccCccCCCCCCCccEEEEeCCCCCCCChhhHHHhhhcCCCcEE
Q 027321 86 GNSWLWDL-DGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKV 164 (225)
Q Consensus 86 hss~lI~~-~g~~ILiDP~~s~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~~~p~~~v 164 (225)
.+|++|+. ++..||||. +... ..+.+. .+++.+..-.++.+||+|||||.|+||+. .|..|.++. .++|
T Consensus 38 rss~ll~~~g~~~iLID~---Gpd~-r~ql~~---~~~~~~~~gl~~~~IdaI~lTH~H~DHi~--GL~~L~~~~-~lpV 107 (302)
T TIGR02108 38 QSSIAVSADGERWVLLNA---SPDI-RQQIQA---TPALHPQRGLRHTPIAGVVLTDGEIDHTT--GLLTLREGQ-PFTL 107 (302)
T ss_pred ccEEEEEeCCCEEEEEEC---CHHH-HHHHHh---CcccccccCCCcccCCEEEEeCCCcchhh--CHHHHcCCC-CceE
Confidence 47788865 557999996 3211 111110 01110101123458999999999999993 566666554 6999
Q ss_pred EEccchHHHHhhh--cC-----CC--eEcCCCceEEECC----CEEEEEEecC--------C---cC--CCCCeEEEEeC
Q 027321 165 IATPNAKTLLDPL--FQ-----NN--PVRALKLKVEMVP----NSESKRLLAQ--------F---WV--LPGNALRMGIS 218 (225)
Q Consensus 165 ~~~~~~~~~L~~~--~~-----~i--~~l~~~e~~~~~~----~l~i~~~p~~--------h---~~--~~~~Gy~l~~~ 218 (225)
|+++.+.+.|++. +. .+ ..+..++.+.+++ +++|+++|.. | .. ....||+|+.+
T Consensus 108 ya~~~t~~~L~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~~~Gy~i~~~ 187 (302)
T TIGR02108 108 YATEMVLQDLSDNPIFNVLDHWNVRRQPIALNEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGDTLGLKIEDG 187 (302)
T ss_pred EECHHHHHHHHhCCCccccchhhccceEecCCCcEEecccccCCEEEEEEEcCCCCCccccccccCCCCCCcEEEEEEeC
Confidence 9999988877642 21 11 4556667776641 3999999997 5 22 45679999975
No 19
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.03 E-value=7.4e-10 Score=103.84 Aligned_cols=111 Identities=20% Similarity=0.203 Sum_probs=78.8
Q ss_pred CcEEEEEECCeEEEEcCccCCCcccccccccccCccccCccCCCCCCCccEEEEeCCCCCCCChhhHHHhhhcCCCcEEE
Q 027321 86 GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVI 165 (225)
Q Consensus 86 hss~lI~~~g~~ILiDP~~s~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~~~p~~~v~ 165 (225)
-|||||+ +++.+||||+..+.. ..++ .++. ...++.+||+|++||.|.||++ ++..|.+++|+++++
T Consensus 35 ~NsYLI~-~~~~vLIDtg~~~~~---~~~l-----~~l~--~~~~~~~Id~IilTH~H~DH~G--gl~~Ll~~~p~a~V~ 101 (479)
T PRK05452 35 YNSYLIR-EEKNVLIDTVDHKFS---REFV-----QNLR--NEIDLADIDYIVINHAEEDHAG--ALTELMAQIPDTPIY 101 (479)
T ss_pred EEEEEEE-CCCEEEEeCCCcccH---HHHH-----HHHH--hcCCHhhCCEEEeCCCCcchhc--hHHHHHHHCCCCEEE
Confidence 3999998 468999999632111 1122 1111 0112347999999999999995 788888888899999
Q ss_pred EccchHHHHhhh-c---CCCeEcCCCceEEECC--CEEEEEEecCCcCCC
Q 027321 166 ATPNAKTLLDPL-F---QNNPVRALKLKVEMVP--NSESKRLLAQFWVLP 209 (225)
Q Consensus 166 ~~~~~~~~L~~~-~---~~i~~l~~~e~~~~~~--~l~i~~~p~~h~~~~ 209 (225)
++......+... . .++..+..|+++++++ .+++..+|+.||+..
T Consensus 102 ~s~~~~~~l~~~~~~~~~~~~~v~~G~~l~lG~~~~l~~i~tP~~H~pgs 151 (479)
T PRK05452 102 CTANAIDSINGHHHHPEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDS 151 (479)
T ss_pred ECHHHHHHHHHhhcCCcCeEEEeCCCCEEecCCCcEEEEEECCCCCCCCc
Confidence 998876666543 1 2457788999999984 367888888899554
No 20
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=98.96 E-value=3.4e-09 Score=93.54 Aligned_cols=119 Identities=13% Similarity=0.066 Sum_probs=79.3
Q ss_pred cCcEEEEEEC----CeEEEEcCccCCCcccccccccccCccccCccCCCCCCCccEEEEeCCCCCCC-ChhhHHH---hh
Q 027321 85 EGNSWLWDLD----GVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHC-HLKTLKP---LS 156 (225)
Q Consensus 85 Ghss~lI~~~----g~~ILiDP~~s~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHl-d~~tl~~---L~ 156 (225)
+.+|++|+.+ +.++|+|. |... ...+. +. .-.+.++|+|+|||.|.||+ ++..+.. +.
T Consensus 16 ~~s~~lv~~~~~~~~~~iLiD~---G~g~--~~~l~-----~~----~i~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~~ 81 (303)
T TIGR02649 16 NVTAILLNLQHPTQSGLWLFDC---GEGT--QHQLL-----HT----AFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMS 81 (303)
T ss_pred CccEEEEEccCCCCCCEEEEEC---CccH--HHHHH-----Hh----CCCHHHCcEEEEeCCChhhcCCHHHHHHHHHhc
Confidence 4689999974 37899996 4222 11110 00 11235899999999999999 4444321 11
Q ss_pred hcCCCcEEEEccchHHHHhhh--c--------CCCeEcCCCceEEECCCEEEEEEecCCcCCCCCeEEEEeCC
Q 027321 157 KMSPNLKVIATPNAKTLLDPL--F--------QNNPVRALKLKVEMVPNSESKRLLAQFWVLPGNALRMGISS 219 (225)
Q Consensus 157 ~~~p~~~v~~~~~~~~~L~~~--~--------~~i~~l~~~e~~~~~~~l~i~~~p~~h~~~~~~Gy~l~~~~ 219 (225)
.+...++||++.++.+.++.. + -.+++++.++.+..++ ++|+++|..| +....||+|+..+
T Consensus 82 ~~~~~l~Iygp~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~v~~~~~~H-~~~~~gy~i~~~~ 152 (303)
T TIGR02649 82 GIIQPLTIYGPQGIREFVETALRISGSWTDYPLEIVEIGAGEILDDGL-RKVTAYPLEH-PLECYGYRIEEHD 152 (303)
T ss_pred CCCCCeEEEechhHHHHHHHHHHhcccccCCceEEEEcCCCceEecCC-eEEEEEEccC-ccceEEEEEeccC
Confidence 111257899999877766543 1 1346677788788776 9999999999 4567899998754
No 21
>PRK02126 ribonuclease Z; Provisional
Probab=98.79 E-value=4.3e-08 Score=88.08 Aligned_cols=120 Identities=10% Similarity=0.085 Sum_probs=78.1
Q ss_pred EEEEEcCcEEEEEE--CCeEEEEcCccCCCcccccccccccCccccCccCCCCCCCccEEEEeCCCCCCC-ChhhHHHhh
Q 027321 80 KLTYLEGNSWLWDL--DGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHC-HLKTLKPLS 156 (225)
Q Consensus 80 ~it~lGhss~lI~~--~g~~ILiDP~~s~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHl-d~~tl~~L~ 156 (225)
...-++.||++|.. +|..+|||+ |. . ..+. ..++.++|+|+|||.|+||+ +...|....
T Consensus 10 ~~g~~~dn~~~l~~~~~~~~iLiD~---G~-~--~~l~------------~~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~ 71 (334)
T PRK02126 10 VNGPFDDPGLYVDFLFERRALLFDL---GD-L--HHLP------------PRELLRISHIFVSHTHMDHFIGFDRLLRHC 71 (334)
T ss_pred ecCCCCCcEEEEEECCCCeEEEEcC---CC-H--HHHh------------hcCCCccCEEEEcCCChhHhCcHHHHHHHh
Confidence 34457889999986 489999997 42 1 1111 13456899999999999999 344443222
Q ss_pred -hcCCCcEEEEccchHHHHhhhcC--------------CCeEcC----------------------------CCceEEEC
Q 027321 157 -KMSPNLKVIATPNAKTLLDPLFQ--------------NNPVRA----------------------------LKLKVEMV 193 (225)
Q Consensus 157 -~~~p~~~v~~~~~~~~~L~~~~~--------------~i~~l~----------------------------~~e~~~~~ 193 (225)
.+.+.+++|++.++.+.++..+. .+...+ .+..++.+
T Consensus 72 ~~r~~~l~iygp~~~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (334)
T PRK02126 72 LGRPRRLRLFGPPGFADQVEHKLAGYTWNLVENYPTTFRVHEVELHDGRIRRALFSCRRAFAREAEEELSLPDGVLLDEP 151 (334)
T ss_pred ccCCCCeEEEECHHHHHHHHHHhccccccCcccCCCceEEEEEEccCccceeeeecccccccccccccccCCCCeEEeCC
Confidence 11235899999998777765310 111111 12224445
Q ss_pred CCEEEEEEecCCcCCCCCeEEEEeCC
Q 027321 194 PNSESKRLLAQFWVLPGNALRMGISS 219 (225)
Q Consensus 194 ~~l~i~~~p~~h~~~~~~Gy~l~~~~ 219 (225)
+ ++|+++|..|- ....||+|+..+
T Consensus 152 ~-~~V~a~~~~H~-vp~~gy~~~e~~ 175 (334)
T PRK02126 152 W-FRVRAAFLDHG-IPCLAFALEEKA 175 (334)
T ss_pred C-EEEEEEEccCC-CceeEEEEEecC
Confidence 4 99999999995 567899999754
No 22
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=98.78 E-value=5.3e-08 Score=92.38 Aligned_cols=134 Identities=14% Similarity=0.084 Sum_probs=95.0
Q ss_pred CCeEEEEE------cCcEEEEEECCeEEEEcCccCCCccccccc-ccccCccccC--ccCCCCCCCccEEEEeCCCCCCC
Q 027321 77 DVFKLTYL------EGNSWLWDLDGVKVLVDPILVGNLDFGIPW-LFDAGKKFLK--SFQLSDLPQVDCLLITQSLDDHC 147 (225)
Q Consensus 77 ~~~~it~l------Ghss~lI~~~g~~ILiDP~~s~~~~~p~~~-~~~~~~~~~~--~~~~~~lp~iD~VlISH~H~DHl 147 (225)
.+++|.-| |.||++++.++..+++|-... ||..- ++ .--..+ .+-.+...++++|+|||.|.||+
T Consensus 7 ~~i~i~~lGG~~EiGkN~~vve~~~~i~i~D~G~~----fp~~~~~g--vDliIPd~~yl~~n~~kvkgI~lTHgHeDHI 80 (555)
T COG0595 7 AKIKIFALGGVGEIGKNMYVVEYGDDIIILDAGLK----FPEDDLLG--VDLIIPDFSYLEENKDKVKGIFLTHGHEDHI 80 (555)
T ss_pred CceEEEEecChhhhccceEEEEECCcEEEEECccc----cCcccccc--ccEEecChHHhhhccccceEEEecCCchhhc
Confidence 45666665 479999999999999995322 24211 11 000011 11122234899999999999999
Q ss_pred ChhhHHHhhhcCCCcEEEEccchHHHHhhh---------cCCCeEcCCCceEEECCCEEEEEEecCCcCCCCCeEEEEeC
Q 027321 148 HLKTLKPLSKMSPNLKVIATPNAKTLLDPL---------FQNNPVRALKLKVEMVPNSESKRLLAQFWVLPGNALRMGIS 218 (225)
Q Consensus 148 d~~tl~~L~~~~p~~~v~~~~~~~~~L~~~---------~~~i~~l~~~e~~~~~~~l~i~~~p~~h~~~~~~Gy~l~~~ 218 (225)
+ +|..|.++...+|+|+++.+..+++.. ...+++++.++++++++ +.|.++|..|---...||++.++
T Consensus 81 G--aip~ll~~~~~~piy~s~lt~~Li~~k~~~~~~~~~~~~~~ev~~~~~i~~~~-~~v~f~~vtHSIPds~g~~i~Tp 157 (555)
T COG0595 81 G--ALPYLLKQVLFAPIYASPLTAALIKEKLKEHGLFKNENELHEVKPGSEIKFGS-FEVEFFPVTHSIPDSLGIVIKTP 157 (555)
T ss_pred c--chHHHHhcCCcCceecCHhhHHHHHHHHHHhccccccCceEEeCCCCeEEeCc-EEEEEEeecccCccceEEEEECC
Confidence 6 788888877669999999887777653 13689999999999987 99999999997555556666554
Q ss_pred C
Q 027321 219 S 219 (225)
Q Consensus 219 ~ 219 (225)
.
T Consensus 158 ~ 158 (555)
T COG0595 158 E 158 (555)
T ss_pred C
Confidence 3
No 23
>PLN02469 hydroxyacylglutathione hydrolase
Probab=98.78 E-value=2.5e-08 Score=86.55 Aligned_cols=97 Identities=18% Similarity=0.140 Sum_probs=67.6
Q ss_pred EcCc-EEEEEEC--CeEEEEcCccCCCcccc-cccccccCccccCccCCCCC-CCccEEEEeCCCCCCCChhhHHHhhhc
Q 027321 84 LEGN-SWLWDLD--GVKVLVDPILVGNLDFG-IPWLFDAGKKFLKSFQLSDL-PQVDCLLITQSLDDHCHLKTLKPLSKM 158 (225)
Q Consensus 84 lGhs-s~lI~~~--g~~ILiDP~~s~~~~~p-~~~~~~~~~~~~~~~~~~~l-p~iD~VlISH~H~DHld~~tl~~L~~~ 158 (225)
+..| ||+|..+ +..+||||.- +. + ..++ ++. -++++||+||.|+||.+ ++..|.++
T Consensus 9 ~~dNy~Yli~d~~~~~~vlIDp~~---~~-~il~~l-------------~~~g~~l~~Il~TH~H~DH~g--G~~~l~~~ 69 (258)
T PLN02469 9 LEDNYAYLIIDESTKDAAVVDPVD---PE-KVLQAA-------------HEHGAKIKLVLTTHHHWDHAG--GNEKIKKL 69 (258)
T ss_pred ccceEEEEEEeCCCCeEEEECCCC---hH-HHHHHH-------------HHcCCcccEEEecCCCCcccc--CHHHHHHH
Confidence 4567 8999754 4789999952 22 2 1122 111 26899999999999995 68889888
Q ss_pred CCCcEEEEccchHHHHhhhcCCCeEcCCCceEEECC--CEEEEEEecC
Q 027321 159 SPNLKVIATPNAKTLLDPLFQNNPVRALKLKVEMVP--NSESKRLLAQ 204 (225)
Q Consensus 159 ~p~~~v~~~~~~~~~L~~~~~~i~~l~~~e~~~~~~--~l~i~~~p~~ 204 (225)
+++++||++... ........+..++.+.+++ .+++..+||+
T Consensus 70 ~~~~~V~~~~~~-----~~~~~~~~v~~gd~i~lg~~~~~~vi~tPGH 112 (258)
T PLN02469 70 VPGIKVYGGSLD-----NVKGCTHPVENGDKLSLGKDVNILALHTPCH 112 (258)
T ss_pred CCCCEEEEechh-----cCCCCCeEeCCCCEEEECCceEEEEEECCCC
Confidence 888999987532 1111124577899999985 3688899985
No 24
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=6.7e-08 Score=89.49 Aligned_cols=120 Identities=22% Similarity=0.151 Sum_probs=82.1
Q ss_pred EcCcEEEEEECCeEEEEcCccCCCcccccccccccCccccCccCCCCCCCccEEEEeCCCCCCCChhhHHHhhhcCCCcE
Q 027321 84 LEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLK 163 (225)
Q Consensus 84 lGhss~lI~~~g~~ILiDP~~s~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~~~p~~~ 163 (225)
.|.+|.+++.++.+||+|+.... .. +. ... |+.. ..+++|+|+|||.|-||++ ++..+..+.-+.+
T Consensus 12 vg~s~~~l~~~~~~il~D~G~~~-~~-~~--------~~~-p~~~-~~~~vDavllTHaHlDH~g--~lp~l~~~~~~~~ 77 (427)
T COG1236 12 VGRSCVLLETGGTRILLDCGLFP-GD-PS--------PER-PLLP-PFPKVDAVLLTHAHLDHIG--ALPYLVRNGFEGP 77 (427)
T ss_pred cCcEEEEEEECCceEEEECCCCc-Cc-CC--------ccC-CCCC-CCCCcCEEEeccCchhhhc--ccHHHHHhccCCc
Confidence 46799999999999999985432 11 10 011 2212 2337999999999999996 5665554222368
Q ss_pred EEEccchHHHHhhh-------c-----------------CCCeEcCCCceEEECCCEEEEEEecCCcCCCCCeEEEEeCC
Q 027321 164 VIATPNAKTLLDPL-------F-----------------QNNPVRALKLKVEMVPNSESKRLLAQFWVLPGNALRMGISS 219 (225)
Q Consensus 164 v~~~~~~~~~L~~~-------~-----------------~~i~~l~~~e~~~~~~~l~i~~~p~~h~~~~~~Gy~l~~~~ 219 (225)
+|+++.+..+++-. . .++..++.++++++++ ++|++.++-|..+ ...|.++..+
T Consensus 78 v~aT~~T~~l~~~~l~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~~-~~v~~~~AGHilG-sa~~~le~~~ 155 (427)
T COG1236 78 VYATPPTAALLKVLLGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEVGG-VKVTFYNAGHILG-SAAILLEVDG 155 (427)
T ss_pred eeeccCHHHHHHHHHHHHHhhhcCCCCCCCchhHHHhhHhhEEEecCCCceEeee-EEEEEecCCCccc-eeEEEEEeCC
Confidence 99998765554422 1 2345689999999998 9999999999865 4455555433
No 25
>PLN02398 hydroxyacylglutathione hydrolase
Probab=98.71 E-value=9.7e-08 Score=85.51 Aligned_cols=105 Identities=18% Similarity=0.095 Sum_probs=69.8
Q ss_pred CeEEEE---EcCc-EEEEEEC--CeEEEEcCccCCCccccc-ccccccCccccCccCCCCCCCccEEEEeCCCCCCCChh
Q 027321 78 VFKLTY---LEGN-SWLWDLD--GVKVLVDPILVGNLDFGI-PWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLK 150 (225)
Q Consensus 78 ~~~it~---lGhs-s~lI~~~--g~~ILiDP~~s~~~~~p~-~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~ 150 (225)
.|+|+. +..| +|+|... +..++|||. .+. ++ ..+. +.--++++||+||.|+||++
T Consensus 75 ~~~i~~ip~l~dNy~Yli~d~~t~~~~vVDP~---~a~-~vl~~l~------------~~g~~L~~ILlTH~H~DH~G-- 136 (329)
T PLN02398 75 SLQIELVPCLKDNYAYLLHDEDTGTVGVVDPS---EAV-PVIDALS------------RKNRNLTYILNTHHHYDHTG-- 136 (329)
T ss_pred CcEEEEEeeeCceEEEEEEECCCCEEEEEcCC---CHH-HHHHHHH------------hcCCCceEEEECCCCchhhC--
Confidence 345444 5565 9999653 578999994 222 22 1121 11126899999999999995
Q ss_pred hHHHhhhcCCCcEEEEccchHHHHhhhcCCCeEcCCCceEEECC-CEEEEEEecC
Q 027321 151 TLKPLSKMSPNLKVIATPNAKTLLDPLFQNNPVRALKLKVEMVP-NSESKRLLAQ 204 (225)
Q Consensus 151 tl~~L~~~~p~~~v~~~~~~~~~L~~~~~~i~~l~~~e~~~~~~-~l~i~~~p~~ 204 (225)
++..|.+++ +++||++......+.. -...++.|+++.+++ .+++..+||+
T Consensus 137 G~~~L~~~~-ga~V~g~~~~~~~i~~---~d~~v~dGd~i~lgg~~l~vi~tPGH 187 (329)
T PLN02398 137 GNLELKARY-GAKVIGSAVDKDRIPG---IDIVLKDGDKWMFAGHEVLVMETPGH 187 (329)
T ss_pred CHHHHHHhc-CCEEEEehHHhhhccC---CcEEeCCCCEEEECCeEEEEEeCCCc
Confidence 678888876 5899998764333221 234577899999976 4667778874
No 26
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=98.71 E-value=9.3e-08 Score=82.33 Aligned_cols=106 Identities=18% Similarity=0.122 Sum_probs=65.9
Q ss_pred EcCc-EEEEEECC-eEEEEcCccCCCcccc-cccccccCccccCccCCCCCC-CccEEEEeCCCCCCCChhhHHHhhhcC
Q 027321 84 LEGN-SWLWDLDG-VKVLVDPILVGNLDFG-IPWLFDAGKKFLKSFQLSDLP-QVDCLLITQSLDDHCHLKTLKPLSKMS 159 (225)
Q Consensus 84 lGhs-s~lI~~~g-~~ILiDP~~s~~~~~p-~~~~~~~~~~~~~~~~~~~lp-~iD~VlISH~H~DHld~~tl~~L~~~~ 159 (225)
+..| +|+|..++ ..+||||..+ . + ...+ ++.. ++++|++||.|.||++ ++..+.+++
T Consensus 7 ~~dN~~yli~~~~~~~ilID~g~~---~-~i~~~l-------------~~~g~~l~~Il~TH~H~DHig--G~~~l~~~~ 67 (248)
T TIGR03413 7 LSDNYIWLLHDPDGQAAVVDPGEA---E-PVLDAL-------------EARGLTLTAILLTHHHHDHVG--GVAELLEAF 67 (248)
T ss_pred cccEEEEEEEcCCCCEEEEcCCCh---H-HHHHHH-------------HHcCCeeeEEEeCCCCccccC--CHHHHHHHC
Confidence 4444 46666544 8999999422 1 1 1122 1111 5899999999999995 678888777
Q ss_pred CCcEEEEccchHHHHhhhcCCCeEcCCCceEEECC-CEEEEEEecCCcCCCCCeEEEE
Q 027321 160 PNLKVIATPNAKTLLDPLFQNNPVRALKLKVEMVP-NSESKRLLAQFWVLPGNALRMG 216 (225)
Q Consensus 160 p~~~v~~~~~~~~~L~~~~~~i~~l~~~e~~~~~~-~l~i~~~p~~h~~~~~~Gy~l~ 216 (225)
+ ++||++... ........+..++++.+++ .+++..+||+ - ....+|.+.
T Consensus 68 ~-~~V~~~~~~-----~~~~~~~~v~~g~~~~~g~~~i~v~~tpGH-T-~g~i~~~~~ 117 (248)
T TIGR03413 68 P-APVYGPAEE-----RIPGITHPVKDGDTVTLGGLEFEVLAVPGH-T-LGHIAYYLP 117 (248)
T ss_pred C-CeEEecccc-----cCCCCcEEeCCCCEEEECCEEEEEEECCCC-C-cccEEEEEC
Confidence 5 889988653 1112245678899999986 3445555653 2 223455443
No 27
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=98.70 E-value=1.8e-07 Score=86.53 Aligned_cols=121 Identities=18% Similarity=0.206 Sum_probs=81.4
Q ss_pred CCeEEEEEc------CcEEEEEECCeEEEEcCccCCCcccccccccccCccccCccCCCCCC--CccEEEEeCCCCCCCC
Q 027321 77 DVFKLTYLE------GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLP--QVDCLLITQSLDDHCH 148 (225)
Q Consensus 77 ~~~~it~lG------hss~lI~~~g~~ILiDP~~s~~~~~p~~~~~~~~~~~~~~~~~~~lp--~iD~VlISH~H~DHld 148 (225)
.-.+||.|| -||+++++.+.+||+|..... ++.+ .+.++-+...++. .+|+|+|||.|-||++
T Consensus 179 ~wvRvt~LGg~~EVGRSa~lv~T~eSrVLlDcG~n~-a~~~--------~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G 249 (637)
T COG1782 179 RWVRVTALGGFREVGRSALLVSTPESRVLLDCGVNV-AGNG--------EDAFPYLDVPEFQPDELDAVIITHAHLDHCG 249 (637)
T ss_pred ceEEEEeeccchhccceeEEEecCCceEEEeccccC-CCCc--------cccCcccccccccccccceEEEeeccccccc
Confidence 336899887 499999999999999975542 2211 0122211122221 6999999999999996
Q ss_pred hhhHHHhhhcCCCcEEEEccchHHHH---h-hh---------------------cCCCeEcCCCceEEECCCEEEEEEec
Q 027321 149 LKTLKPLSKMSPNLKVIATPNAKTLL---D-PL---------------------FQNNPVRALKLKVEMVPNSESKRLLA 203 (225)
Q Consensus 149 ~~tl~~L~~~~p~~~v~~~~~~~~~L---~-~~---------------------~~~i~~l~~~e~~~~~~~l~i~~~p~ 203 (225)
.|..|-+-.-+-||||++.+..++ + +. ....+.++.|+...+..+++++.--|
T Consensus 250 --~lP~LfkYgy~GPVY~T~PTRDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDIaPDirLTf~NA 327 (637)
T COG1782 250 --FLPLLFKYGYDGPVYCTPPTRDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDIAPDIRLTFYNA 327 (637)
T ss_pred --chhhhhhcCCCCCeeeCCCcHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCcccccCCccEEEEecc
Confidence 466665532256999998754322 1 10 02467899999888887899999888
Q ss_pred CCcCC
Q 027321 204 QFWVL 208 (225)
Q Consensus 204 ~h~~~ 208 (225)
-|.-+
T Consensus 328 GHILG 332 (637)
T COG1782 328 GHILG 332 (637)
T ss_pred cchhc
Confidence 88743
No 28
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=98.67 E-value=3.3e-08 Score=84.82 Aligned_cols=73 Identities=26% Similarity=0.318 Sum_probs=51.7
Q ss_pred cEEEEEECCeEEEEcCccCCCcccccccccccCccccCccCCCCCCCccEEEEeCCCCCCCChhhHHHhhh-cCCCcEEE
Q 027321 87 NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSK-MSPNLKVI 165 (225)
Q Consensus 87 ss~lI~~~g~~ILiDP~~s~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~-~~p~~~v~ 165 (225)
=|+||+.++++||+|. +..+ ..++. +...+ -.++..+|+|+|||+||||.+ .|..+.+ ..+.+++|
T Consensus 23 fS~LVE~~~~riLFDt---G~~~--~~ll~-----Na~~l-gvd~~did~vvlSHgH~DH~G--GL~~~~~~~~~~i~v~ 89 (259)
T COG1237 23 FSALVEDEGTRILFDT---GTDS--DVLLH-----NARLL-GVDLRDIDAVVLSHGHYDHTG--GLPYLLEENNPGIPVY 89 (259)
T ss_pred eEEEEEcCCeEEEEeC---CCCc--HHHHH-----HHHHc-CCCcccCcEEEEeCCCccccC--chHhHHhccCCCceEE
Confidence 4679999999999996 3111 22332 22211 234558999999999999995 6777765 45889999
Q ss_pred EccchHH
Q 027321 166 ATPNAKT 172 (225)
Q Consensus 166 ~~~~~~~ 172 (225)
++|+..+
T Consensus 90 ahp~af~ 96 (259)
T COG1237 90 AHPDAFK 96 (259)
T ss_pred eChHHHh
Confidence 9998644
No 29
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=98.66 E-value=5.7e-08 Score=83.83 Aligned_cols=92 Identities=15% Similarity=0.188 Sum_probs=62.6
Q ss_pred EEEEE-CCeEEEEcCccCCCcccc-cccccccCccccCccCCCCCC-CccEEEEeCCCCCCCChhhHHHhhhcCCCcEEE
Q 027321 89 WLWDL-DGVKVLVDPILVGNLDFG-IPWLFDAGKKFLKSFQLSDLP-QVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVI 165 (225)
Q Consensus 89 ~lI~~-~g~~ILiDP~~s~~~~~p-~~~~~~~~~~~~~~~~~~~lp-~iD~VlISH~H~DHld~~tl~~L~~~~p~~~v~ 165 (225)
|+|.. ++..+||||... . + ...+ ++.. .+++|++||.|+||++ ++..|.+++++++||
T Consensus 15 ~li~~~~~~~ilIDpg~~---~-~vl~~l-------------~~~g~~l~~IllTH~H~DHig--G~~~l~~~~~~~~V~ 75 (251)
T PRK10241 15 WVLNDEAGRCLIVDPGEA---E-PVLNAI-------------AENNWQPEAIFLTHHHHDHVG--GVKELVEKFPQIVVY 75 (251)
T ss_pred EEEEcCCCcEEEECCCCh---H-HHHHHH-------------HHcCCccCEEEeCCCCchhhc--cHHHHHHHCCCCEEE
Confidence 66644 468999999532 2 2 1111 1111 5789999999999995 688888888889999
Q ss_pred EccchHHHHhhhcCCCeEcCCCceEEECC-CEEEEEEecC
Q 027321 166 ATPNAKTLLDPLFQNNPVRALKLKVEMVP-NSESKRLLAQ 204 (225)
Q Consensus 166 ~~~~~~~~L~~~~~~i~~l~~~e~~~~~~-~l~i~~~p~~ 204 (225)
++..... ......+..++++.+++ .+++..+||+
T Consensus 76 ~~~~~~~-----~~~~~~v~~g~~i~ig~~~~~vi~tPGH 110 (251)
T PRK10241 76 GPQETQD-----KGTTQVVKDGETAFVLGHEFSVFATPGH 110 (251)
T ss_pred ecccccc-----cCCceEeCCCCEEEeCCcEEEEEEcCCC
Confidence 8754211 11235577899999976 4677788884
No 30
>PLN02962 hydroxyacylglutathione hydrolase
Probab=98.64 E-value=7e-08 Score=83.43 Aligned_cols=101 Identities=15% Similarity=0.077 Sum_probs=67.0
Q ss_pred EcCcEEEEEE----CCeEEEEcCccCCCcccccccccccCccccCccCCCCCCCccEEEEeCCCCCCCChhhHHHhhhcC
Q 027321 84 LEGNSWLWDL----DGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMS 159 (225)
Q Consensus 84 lGhss~lI~~----~g~~ILiDP~~s~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~~~ 159 (225)
++++||+|-. ++..+||||.... ..--..++. -.. -++.+||+||.|.||++ ....|++++
T Consensus 21 ~~~~~Yll~d~~~~~~~avlIDP~~~~-~~~~l~~l~-----------~~g-~~i~~Il~TH~H~DHig--g~~~l~~~~ 85 (251)
T PLN02962 21 SSTYTYLLADVSHPDKPALLIDPVDKT-VDRDLSLVK-----------ELG-LKLIYAMNTHVHADHVT--GTGLLKTKL 85 (251)
T ss_pred ceeEEEEEEeCCCCCCEEEEECCCCCc-HHHHHHHHH-----------HCC-CeeEEEEcCCCCchhHH--HHHHHHHHC
Confidence 4689999864 4688999994211 110011221 011 15789999999999995 678888877
Q ss_pred CCcEEEEccchHHHHhhhcCCCeEcCCCceEEECC-CEEEEEEecCC
Q 027321 160 PNLKVIATPNAKTLLDPLFQNNPVRALKLKVEMVP-NSESKRLLAQF 205 (225)
Q Consensus 160 p~~~v~~~~~~~~~L~~~~~~i~~l~~~e~~~~~~-~l~i~~~p~~h 205 (225)
+++++++.... . ...-..++.++++.+++ .+++..+||+-
T Consensus 86 ~~a~v~~~~~~-----~-~~~d~~l~~g~~i~~g~~~l~vi~tPGHT 126 (251)
T PLN02962 86 PGVKSIISKAS-----G-SKADLFVEPGDKIYFGDLYLEVRATPGHT 126 (251)
T ss_pred CCCeEEecccc-----C-CCCCEEeCCCCEEEECCEEEEEEECCCCC
Confidence 78999886531 1 11124577899999987 46777888863
No 31
>PRK00055 ribonuclease Z; Reviewed
Probab=98.61 E-value=5.6e-08 Score=83.43 Aligned_cols=84 Identities=26% Similarity=0.279 Sum_probs=54.1
Q ss_pred eEEEEEc-----------CcEEEEEECCeEEEEcCccCCCcccccccccccCccccCccCCCCCCCccEEEEeCCCCCCC
Q 027321 79 FKLTYLE-----------GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHC 147 (225)
Q Consensus 79 ~~it~lG-----------hss~lI~~~g~~ILiDP~~s~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHl 147 (225)
|+|+.|| .+|++|+.++.++|||+ |... ...+. +. ..++.++|+|+|||.|.||+
T Consensus 2 m~i~~LGsg~~~~~~~r~~~~~li~~~~~~iLiD~---G~g~--~~~l~----~~-----~~~~~~i~~i~lTH~H~DHi 67 (270)
T PRK00055 2 MELTFLGTGSGVPTPTRNVSSILLRLGGELFLFDC---GEGT--QRQLL----KT-----GIKPRKIDKIFITHLHGDHI 67 (270)
T ss_pred eEEEEEecCCCCCcCCCCCCEEEEEECCcEEEEEC---CHHH--HHHHH----Hc-----CCCHHHCCEEEEeCCCchhh
Confidence 6777777 79999999999999997 4221 11110 00 11234789999999999999
Q ss_pred C-hhhHHHh---hhcCCCcEEEEccchHHHHhh
Q 027321 148 H-LKTLKPL---SKMSPNLKVIATPNAKTLLDP 176 (225)
Q Consensus 148 d-~~tl~~L---~~~~p~~~v~~~~~~~~~L~~ 176 (225)
. +..+... ..+...++||++++..+.++.
T Consensus 68 ~Gl~~l~~~~~~~~~~~~l~iy~p~~~~~~~~~ 100 (270)
T PRK00055 68 FGLPGLLSTRSLSGRTEPLTIYGPKGIKEFVET 100 (270)
T ss_pred CcHHHHHHHhhhcCCCceEEEECCccHHHHHHH
Confidence 4 3333211 112235789999887666653
No 32
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.40 E-value=2.2e-06 Score=73.47 Aligned_cols=117 Identities=13% Similarity=0.047 Sum_probs=66.0
Q ss_pred EEEEEECCeEEEEcCccCCCcccccccccccCccccC--cc--C----------CC-CCCCccEEEEeCCCCCCCCh---
Q 027321 88 SWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLK--SF--Q----------LS-DLPQVDCLLITQSLDDHCHL--- 149 (225)
Q Consensus 88 s~lI~~~g~~ILiDP~~s~~~~~p~~~~~~~~~~~~~--~~--~----------~~-~lp~iD~VlISH~H~DHld~--- 149 (225)
+.+|++.+..|||||.-+= .| +|+. |- . +. -..+.|.|.|||-||||.+.
T Consensus 17 At~vet~dv~ILiDpGVsL---aP---------kRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHhtPf~~ 84 (304)
T COG2248 17 ATFVETKDVGILIDPGVSL---AP---------KRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHHTPFFD 84 (304)
T ss_pred hheeecCCeeEEECCcccc---Cc---------cccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccCCcccc
Confidence 4678999999999994331 12 2321 11 0 11 12478999999999999985
Q ss_pred ----hhHHHhhhcCCCcEEEE-ccc----------hHHHHhhh--cCCCeEcCCCceEEECCCEEEEEEec-CCcCC-CC
Q 027321 150 ----KTLKPLSKMSPNLKVIA-TPN----------AKTLLDPL--FQNNPVRALKLKVEMVPNSESKRLLA-QFWVL-PG 210 (225)
Q Consensus 150 ----~tl~~L~~~~p~~~v~~-~~~----------~~~~L~~~--~~~i~~l~~~e~~~~~~~l~i~~~p~-~h~~~-~~ 210 (225)
.+...-.+-|.+..+++ .+. ....|+.. ..+-++...+.+++|++ ..|.+-|. .|... ..
T Consensus 85 ~~y~~s~e~~~eiY~gK~lLlKhPte~IN~SQ~~Ra~~fl~~~~~~~~~ie~ADgk~f~fG~-t~IefS~pvpHG~eGsk 163 (304)
T COG2248 85 GIYEASGETAKEIYKGKLLLLKHPTENINRSQRRRAYRFLESLKDIAREIEYADGKTFEFGG-TVIEFSPPVPHGREGSK 163 (304)
T ss_pred chhhhcccchHHHhcCcEEEecCchhhhCHHHHHHHHHHHHHhhhhcceeEecCCceEEeCC-EEEEecCCCCCCCcccc
Confidence 22221222222233332 221 11223322 23456778899999987 88876653 33322 34
Q ss_pred CeEEEEe
Q 027321 211 NALRMGI 217 (225)
Q Consensus 211 ~Gy~l~~ 217 (225)
.||++..
T Consensus 164 LGyVl~v 170 (304)
T COG2248 164 LGYVLMV 170 (304)
T ss_pred cceEEEE
Confidence 6888753
No 33
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=98.39 E-value=1.9e-07 Score=74.22 Aligned_cols=75 Identities=19% Similarity=0.175 Sum_probs=49.9
Q ss_pred EEcCcEEEEEECCeEEEEcCccCCCcccccccccccCccccCccCCCCCCCccEEEEeCCCCCCCChhhHHHhhhcCCCc
Q 027321 83 YLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNL 162 (225)
Q Consensus 83 ~lGhss~lI~~~g~~ILiDP~~s~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~~~p~~ 162 (225)
+.+.||++|+.++..||||+....... .... ... ......+|++|++||.|+||++ ++..+.++.+..
T Consensus 3 ~~~~n~~li~~~~~~iliD~G~~~~~~--~~~~-----~~~---~~~~~~~i~~vi~TH~H~DH~g--gl~~~~~~~~~~ 70 (194)
T PF00753_consen 3 EGGSNSYLIEGGDGAILIDTGLDPDFA--KELE-----LAL---LGISGEDIDAVILTHAHPDHIG--GLPELLEAGPVV 70 (194)
T ss_dssp SEEEEEEEEEETTEEEEESEBSSHHHH--HHHH-----HHH---HHHTGGGEEEEEESSSSHHHHT--THHHHHHHTTEE
T ss_pred CeeEEEEEEEECCEEEEEeCCCCchhh--HHhh-----hhH---hhccCCCeEEEEECcccccccc--ccccccccccee
Confidence 467899999999999999985443111 1000 000 0122348999999999999995 788888886544
Q ss_pred EEEEccc
Q 027321 163 KVIATPN 169 (225)
Q Consensus 163 ~v~~~~~ 169 (225)
.+.....
T Consensus 71 ~~~~~~~ 77 (194)
T PF00753_consen 71 IIYSSAD 77 (194)
T ss_dssp EEEEHHH
T ss_pred eeecccc
Confidence 4444443
No 34
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=98.30 E-value=1.9e-06 Score=80.55 Aligned_cols=131 Identities=19% Similarity=0.129 Sum_probs=81.9
Q ss_pred CCCeEEEEEc------CcEEEEEECCeEEEEcCccCCCcccccccccccCccccCccCCCCCCCccEEEEeCCCCCCCCh
Q 027321 76 TDVFKLTYLE------GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHL 149 (225)
Q Consensus 76 ~~~~~it~lG------hss~lI~~~g~~ILiDP~~s~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~ 149 (225)
.+.++++.|| -||.++|+.|++|+.||.... + .+-+ ..++=++.-+++.+|.++|||.|.||+.
T Consensus 11 ~d~l~~~pLGag~EVGRSC~ile~kGk~iMld~gvhp-a---ysg~-----aslpf~d~vd~s~id~llIthFhldh~a- 80 (668)
T KOG1137|consen 11 SDQLKFTPLGAGNEVGRSCHILEYKGKTIMLDCGVHP-A---YSGM-----ASLPFYDEVDLSAIDPLLITHFHLDHAA- 80 (668)
T ss_pred CCcEEEEECCCCcccCceEEEEEecCeEEEeccccCc-c---cccc-----ccccchhhcccccccHHHHhhhhhhhcc-
Confidence 4567777766 699999999999999974321 0 0000 1122234567789999999999999995
Q ss_pred hhHHHhhhcC-CCcEEEEccchHHHHhhh-------------------------cCCCeEcCCCceEEECCCEEEEEEec
Q 027321 150 KTLKPLSKMS-PNLKVIATPNAKTLLDPL-------------------------FQNNPVRALKLKVEMVPNSESKRLLA 203 (225)
Q Consensus 150 ~tl~~L~~~~-p~~~v~~~~~~~~~L~~~-------------------------~~~i~~l~~~e~~~~~~~l~i~~~p~ 203 (225)
++..+.++. -.-++|.+-.+.+..+.. +.++..++-.|.+++.| +++.+.-+
T Consensus 81 -slp~~~qkTsf~grvfmth~TkAi~kwllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfhe~~ev~g-Ikf~p~~a 158 (668)
T KOG1137|consen 81 -SLPFTLQKTSFIGRVFMTHPTKAIYKWLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFHETVEVNG-IKFWPYHA 158 (668)
T ss_pred -cccceeeeccccceeEEecchHHHHHhhhhcceEeeeccCccccccchhHHHhhhhheeeeeccccccCC-eEEEeecc
Confidence 455444431 123444443332222110 13567778888899887 99999988
Q ss_pred CCcCCCCCeEEEEeCC
Q 027321 204 QFWVLPGNALRMGISS 219 (225)
Q Consensus 204 ~h~~~~~~Gy~l~~~~ 219 (225)
-|..+ ++=|++++.|
T Consensus 159 GhVlg-acMf~veiag 173 (668)
T KOG1137|consen 159 GHVLG-ACMFMVEIAG 173 (668)
T ss_pred chhhh-heeeeeeece
Confidence 88744 2234444443
No 35
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=98.23 E-value=7e-06 Score=72.48 Aligned_cols=123 Identities=22% Similarity=0.233 Sum_probs=72.2
Q ss_pred eEEEEEc-----------CcEEEEEECCeEEEEcCccCCCcccccccccccCccccCccCCCCCCCccEEEEeCCCCCCC
Q 027321 79 FKLTYLE-----------GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHC 147 (225)
Q Consensus 79 ~~it~lG-----------hss~lI~~~g~~ILiDP~~s~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHl 147 (225)
|++++|| .++++|+.+|..+|+|. |... -.+... ......++|.|+|||.|.||+
T Consensus 2 m~i~fLGtg~~~Pt~~r~~~s~ll~~~~~~~L~Dc---GeGt-~~~l~~----------~~~~~~~i~~IfITH~H~DHi 67 (292)
T COG1234 2 MEITFLGTGGAVPTKDRNVSSILLRLEGEKFLFDC---GEGT-QHQLLR----------AGLPPRKIDAIFITHLHGDHI 67 (292)
T ss_pred cEEEEEecCCCCCcCccccceeEEEeCCeeEEEEC---CHhH-HHHHHH----------hcCChhhccEEEeeccccchh
Confidence 5677776 57889999999999995 4322 011110 011222799999999999998
Q ss_pred -ChhhHHHhh---hcCCCcEEEEccchHHHHhhh--cCCCeEcCCC-ceEEE--CCCEEEEEEecCCcCCCCCeEEEEeC
Q 027321 148 -HLKTLKPLS---KMSPNLKVIATPNAKTLLDPL--FQNNPVRALK-LKVEM--VPNSESKRLLAQFWVLPGNALRMGIS 218 (225)
Q Consensus 148 -d~~tl~~L~---~~~p~~~v~~~~~~~~~L~~~--~~~i~~l~~~-e~~~~--~~~l~i~~~p~~h~~~~~~Gy~l~~~ 218 (225)
|+..+.... .+...+.+|.|.+..+.+..+ ... ....+- .-.++ +. +++.+....|- ....||.++..
T Consensus 68 ~gL~~ll~~~~~~~~~~~l~iygP~g~~~~~~~~~~~~~-~~~~~~i~~~e~~~~~-~~v~~~~~~h~-~~~~~y~~~e~ 144 (292)
T COG1234 68 AGLPGLLVSRSFRGRREPLKIYGPPGIKEFVETSLRLSY-SKLTYEIIGHEIEEDA-FEVEALELDHG-VPALGYRIEEP 144 (292)
T ss_pred cCcHHHHHHhhccCCCCceeEECCcchhhhhhhhhhhcc-cccceEEEEEEeccCc-eEEEEEecCCC-ccccceeeecC
Confidence 555443332 222236888888877666654 110 111110 00112 33 77777776665 34677777765
No 36
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=98.17 E-value=1.3e-05 Score=71.29 Aligned_cols=119 Identities=18% Similarity=0.257 Sum_probs=76.2
Q ss_pred CeEEEEE------cCcEEEEEECCeEEEEcCccCCCcccccccccccCccccCccC----CCCC-CCccEEEEeCCCCCC
Q 027321 78 VFKLTYL------EGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQ----LSDL-PQVDCLLITQSLDDH 146 (225)
Q Consensus 78 ~~~it~l------Ghss~lI~~~g~~ILiDP~~s~~~~~p~~~~~~~~~~~~~~~~----~~~l-p~iD~VlISH~H~DH 146 (225)
+++++.| |-||.++.++|++|++|.... .++- ..+||+.++ -..+ ..||.|+|||.|.||
T Consensus 3 ~i~v~pLGAGQdvGrSCilvsi~Gk~iM~DCGMH------MG~n---D~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDH 73 (501)
T KOG1136|consen 3 EIKVTPLGAGQDVGRSCILVSIGGKNIMFDCGMH------MGFN---DDRRFPDFSYISKSGRFTDAIDCVIISHFHLDH 73 (501)
T ss_pred cceEEeccCCcccCceEEEEEECCcEEEEecccc------cccC---ccccCCCceeecCCCCcccceeEEEEeeecccc
Confidence 3455554 579999999999999996332 1111 124444211 1122 268999999999999
Q ss_pred CChhhHHHhhhc--CCCcEEEEccchHH----HHhhh----------------------cCCCeEcCCCceEEECCCEEE
Q 027321 147 CHLKTLKPLSKM--SPNLKVIATPNAKT----LLDPL----------------------FQNNPVRALKLKVEMVPNSES 198 (225)
Q Consensus 147 ld~~tl~~L~~~--~p~~~v~~~~~~~~----~L~~~----------------------~~~i~~l~~~e~~~~~~~l~i 198 (225)
++ +|..+.+- + +-|+|.+..+.+ +|++. .++++.++-.|++.++.++.|
T Consensus 74 cG--aLPyfsEv~GY-~GPIYMt~PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt~~vD~dl~I 150 (501)
T KOG1136|consen 74 CG--ALPYFSEVVGY-DGPIYMTYPTKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLHQTIQVDEDLQI 150 (501)
T ss_pred cc--cccchHhhhCC-CCceEEecchhhhchHHHHHHHHHhccccCcccceeHHHHHHHHhheeEeeehheEEeccccee
Confidence 96 56555542 2 456666543221 12211 136788889999999888999
Q ss_pred EEEecCCcCC
Q 027321 199 KRLLAQFWVL 208 (225)
Q Consensus 199 ~~~p~~h~~~ 208 (225)
++.-+-|..+
T Consensus 151 rayYAGHVLG 160 (501)
T KOG1136|consen 151 RAYYAGHVLG 160 (501)
T ss_pred eeeecccccc
Confidence 9988887643
No 37
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=98.15 E-value=1.2e-05 Score=69.65 Aligned_cols=76 Identities=14% Similarity=0.073 Sum_probs=51.5
Q ss_pred CCCCccEEEEeCCCCCCCChhhHHHhhhcCC-CcEEEEccchHHHHhhhcCCCeEcCCCceEEECCCEEEEEEecCCcCC
Q 027321 130 DLPQVDCLLITQSLDDHCHLKTLKPLSKMSP-NLKVIATPNAKTLLDPLFQNNPVRALKLKVEMVPNSESKRLLAQFWVL 208 (225)
Q Consensus 130 ~lp~iD~VlISH~H~DHld~~tl~~L~~~~p-~~~v~~~~~~~~~L~~~~~~i~~l~~~e~~~~~~~l~i~~~p~~h~~~ 208 (225)
+...+++||.||-|+||.+ ++..|.+.++ ++++|... .+....+ . ..++.+|++.+++ ++|+++..+-++.
T Consensus 48 ~~~~l~~Il~THhH~DHsG--Gn~~i~~~~~~~~~v~g~~--~~r~~~i-~--~~~~~~e~~~~~g-~~v~~l~TPgHT~ 119 (265)
T KOG0813|consen 48 ENRRLTAILTTHHHYDHSG--GNEDIKREIPYDIKVIGGA--DDRIPGI-T--RGLKDGETVTVGG-LEVRCLHTPGHTA 119 (265)
T ss_pred ccCceeEEEeccccccccC--cHHHHHhhccCCcEEecCC--hhcCccc-c--ccCCCCcEEEECC-EEEEEEeCCCccC
Confidence 4558999999999999996 6888887644 67777664 1111111 1 2378899999997 7777666655544
Q ss_pred CCCeE
Q 027321 209 PGNAL 213 (225)
Q Consensus 209 ~~~Gy 213 (225)
.--.|
T Consensus 120 ~hi~~ 124 (265)
T KOG0813|consen 120 GHICY 124 (265)
T ss_pred CcEEE
Confidence 43333
No 38
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=98.15 E-value=7.7e-06 Score=68.19 Aligned_cols=108 Identities=19% Similarity=0.055 Sum_probs=61.8
Q ss_pred CcEEEEEECC-eEEEEcCccCCCcccccccccccCccccCccCCCCCCCccEEEEeCCCCCCCChhhHHHhhhcCCCcEE
Q 027321 86 GNSWLWDLDG-VKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKV 164 (225)
Q Consensus 86 hss~lI~~~g-~~ILiDP~~s~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~~~p~~~v 164 (225)
.+++++..++ ..+|||+....... ..+. ..+. .... +|++|++||.|+||+. .+..+.+..+.+++
T Consensus 25 ~~~~~~~~~~~~~~liD~G~~~~~~---~~~~----~~l~---~~~~-~i~~vilTH~H~DH~g--g~~~~~~~~~~~~~ 91 (252)
T COG0491 25 NSVYLLVDGEGGAVLIDTGLGDADA---EALL----EALA---ALGL-DVDAILLTHGHFDHIG--GAAVLKEAFGAAPV 91 (252)
T ss_pred ccEEEEEcCCCceEEEeCCCCchHH---HHHH----HHHH---HcCC-ChheeeecCCchhhhc--cHHHHHhhcCCceE
Confidence 3444555444 89999986543111 1110 0110 1111 7999999999999995 56777665433667
Q ss_pred EEccchHHHHhhh-------------c---CCCeEcCCCceEEECC-CEEEEEEecCCc
Q 027321 165 IATPNAKTLLDPL-------------F---QNNPVRALKLKVEMVP-NSESKRLLAQFW 206 (225)
Q Consensus 165 ~~~~~~~~~L~~~-------------~---~~i~~l~~~e~~~~~~-~l~i~~~p~~h~ 206 (225)
+............ . .....+..++.+.+++ .+++..+||+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~tpGHT~ 150 (252)
T COG0491 92 IAPAEVPLLLREEILRKAGVTAEAYAAPGASPLRALEDGDELDLGGLELEVLHTPGHTP 150 (252)
T ss_pred EccchhhhhhhcccccccccccccCCCCccccceecCCCCEEEecCeEEEEEECCCCCC
Confidence 4444433322211 1 1233455678888875 478888887643
No 39
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=98.10 E-value=2.9e-05 Score=75.71 Aligned_cols=110 Identities=12% Similarity=0.040 Sum_probs=70.6
Q ss_pred CCeEEEEE--c-CcEEEEEECCeEEEEcCccCCCcccccccccccCccccCc-cCCCCCCCccEEEEeCCCCCCCChhhH
Q 027321 77 DVFKLTYL--E-GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKS-FQLSDLPQVDCLLITQSLDDHCHLKTL 152 (225)
Q Consensus 77 ~~~~it~l--G-hss~lI~~~g~~ILiDP~~s~~~~~p~~~~~~~~~~~~~~-~~~~~lp~iD~VlISH~H~DHld~~tl 152 (225)
++.+|+++ | +.|.+|+.+++++|||.. ... +..-.+ .+.+.| +.-..+. +|+|+|||.|.||.+ .+
T Consensus 438 ~~~~v~~lDVGqGdaili~~~~~~iLIDtG---~~~-~~~~~~---~~~l~p~L~~~Gi~-ID~lilTH~d~DHiG--Gl 507 (662)
T TIGR00361 438 SSWQVDMLDVGQGLAMFIGANGKGILYDTG---EPW-REGSLG---EKVIIPFLTAKGIK-LEALILSHADQDHIG--GA 507 (662)
T ss_pred CCEEEEEEecCCceEEEEEECCeEEEEeCC---CCC-CCCCcc---HHHHHHHHHHcCCC-cCEEEECCCchhhhC--cH
Confidence 35788887 4 478899999999999974 211 110000 011111 1122344 999999999999995 67
Q ss_pred HHhhhcCCCcEEEEccchHHHHhhhcCCCeEcCCCceEEECCCEEEEEE
Q 027321 153 KPLSKMSPNLKVIATPNAKTLLDPLFQNNPVRALKLKVEMVPNSESKRL 201 (225)
Q Consensus 153 ~~L~~~~p~~~v~~~~~~~~~L~~~~~~i~~l~~~e~~~~~~~l~i~~~ 201 (225)
..+.++++..+++.+.... .....+.++..|+..++++ +++.++
T Consensus 508 ~~ll~~~~v~~i~~~~~~~----~~~~~~~~~~~G~~~~~~~-~~~~vL 551 (662)
T TIGR00361 508 EIILKHHPVKRLVIPKGFV----EEGVAIEECKRGDVWQWQG-LQFHVL 551 (662)
T ss_pred HHHHHhCCccEEEeccchh----hCCCceEecCCCCEEeECC-EEEEEE
Confidence 7888877666777765421 1112345677889999987 887766
No 40
>PRK11539 ComEC family competence protein; Provisional
Probab=98.08 E-value=2.8e-05 Score=76.90 Aligned_cols=107 Identities=11% Similarity=-0.012 Sum_probs=67.8
Q ss_pred CCCeEEEEE--cC-cEEEEEECCeEEEEcCccCCCcccccccccccCccccCc-cCCCCCCCccEEEEeCCCCCCCChhh
Q 027321 76 TDVFKLTYL--EG-NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKS-FQLSDLPQVDCLLITQSLDDHCHLKT 151 (225)
Q Consensus 76 ~~~~~it~l--Gh-ss~lI~~~g~~ILiDP~~s~~~~~p~~~~~~~~~~~~~~-~~~~~lp~iD~VlISH~H~DHld~~t 151 (225)
+++.+|+.+ || .|.+|+.+|+++|+|+.- .. +..-.+ .+.+.| +....+ ++|+|+|||.|.||.+ .
T Consensus 498 ~~~~~v~~lDVGqG~a~li~~~~~~lLiDtG~---~~-~~~~~~---~~~i~P~L~~~Gi-~lD~lilSH~d~DH~G--G 567 (755)
T PRK11539 498 EYEWRVDMLDVGHGLAVVIERNGKAILYDTGN---AW-PTGDSA---QQVIIPWLRWHGL-TPEGIILSHEHLDHRG--G 567 (755)
T ss_pred CCcEEEEEEEccCceEEEEEECCEEEEEeCCC---CC-CCCcch---HHHHHHHHHHcCC-CcCEEEeCCCCcccCC--C
Confidence 456788886 54 778899999999999842 11 100000 011101 112234 5999999999999995 6
Q ss_pred HHHhhhcCCCcEEEEccchHHHHhhhcCCCeEcCCCceEEECCCEEEEEE
Q 027321 152 LKPLSKMSPNLKVIATPNAKTLLDPLFQNNPVRALKLKVEMVPNSESKRL 201 (225)
Q Consensus 152 l~~L~~~~p~~~v~~~~~~~~~L~~~~~~i~~l~~~e~~~~~~~l~i~~~ 201 (225)
+..+.+++|..+++.+.... +...+..|+..+.++ +++..+
T Consensus 568 l~~Ll~~~~~~~i~~~~~~~--------~~~~~~~g~~~~~~~-~~~~vL 608 (755)
T PRK11539 568 LASLLHAWPMAWIRSPLNWA--------NHLPCVRGEQWQWQG-LTFSVH 608 (755)
T ss_pred HHHHHHhCCcceeeccCccc--------CcccccCCCeEeECC-EEEEEE
Confidence 77888887777777754211 123345678888886 766655
No 41
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=98.03 E-value=5.2e-06 Score=72.17 Aligned_cols=84 Identities=13% Similarity=0.046 Sum_probs=48.5
Q ss_pred CCccEEEEeCCCCCCCChhhHHHhhhcCCCcEEEEccchHHHH-----hhhc--CCCeEcCCCceEEECCCEEEEEEecC
Q 027321 132 PQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTLL-----DPLF--QNNPVRALKLKVEMVPNSESKRLLAQ 204 (225)
Q Consensus 132 p~iD~VlISH~H~DHld~~tl~~L~~~~p~~~v~~~~~~~~~L-----~~~~--~~i~~l~~~e~~~~~~~l~i~~~p~~ 204 (225)
+.+|+||+||.|+||+. ++..|++.+ ..++++........ .+.+ .........+...+.+ +++++.+..
T Consensus 61 ~~idai~~TH~H~DHi~--Gl~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 136 (269)
T COG1235 61 SDLDAILLTHEHSDHIQ--GLDDLRRAY-TLPIYVNPGTLRASTSDRLLGGFPYLFRHPFPPFSLPAIGG-LEVTPFPVP 136 (269)
T ss_pred cccCeEEEecccHHhhc--ChHHHHHHh-cCCcccccceecccchhhhhccchhhhcCCCCccccccccc-eeeecCCCC
Confidence 47999999999999994 566666643 23444443321111 1111 1112223455566665 888888877
Q ss_pred CcCCCCCeEEEEeCC
Q 027321 205 FWVLPGNALRMGISS 219 (225)
Q Consensus 205 h~~~~~~Gy~l~~~~ 219 (225)
|...+..|+++...+
T Consensus 137 hd~~~~~~~~~~~~~ 151 (269)
T COG1235 137 HDAIEPVGFVIIRTG 151 (269)
T ss_pred CccccCCCcccccCc
Confidence 776665555554433
No 42
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=98.00 E-value=2.7e-05 Score=74.47 Aligned_cols=109 Identities=17% Similarity=0.138 Sum_probs=77.5
Q ss_pred cCcEEEEEECCeEEEEcCccCCCcccccccccccCccccCccCCCCCCCccEEEEeCCCCCCCChhhHHHhhhc-CCCcE
Q 027321 85 EGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKM-SPNLK 163 (225)
Q Consensus 85 Ghss~lI~~~g~~ILiDP~~s~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~~-~p~~~ 163 (225)
|.-|+++|++|.+|||||.|.... ..+.+. . + ...++.||+|||||--.=|++ +|..+-.+ +=+++
T Consensus 14 ~~~cyllqiD~~~iLiDcGwd~~f--~~~~i~-----~---l-~~~i~~iDaILLShpd~~hlG--aLpY~~~k~gl~~~ 80 (764)
T KOG1135|consen 14 GPLCYLLQIDGVRILIDCGWDESF--DMSMIK-----E---L-KPVIPTIDAILLSHPDILHLG--ALPYAVGKLGLNAP 80 (764)
T ss_pred CcceEEEEEcCeEEEEeCCCcchh--ccchhh-----h---h-hcccccccEEEecCCChHHhc--cchhhHhhCCccce
Confidence 356899999999999999887542 344431 1 1 235679999999998888996 46544443 22578
Q ss_pred EEEccchHH--------HHhh--------------h---cCCCeEcCCCceEEECC---CEEEEEEecCCc
Q 027321 164 VIATPNAKT--------LLDP--------------L---FQNNPVRALKLKVEMVP---NSESKRLLAQFW 206 (225)
Q Consensus 164 v~~~~~~~~--------~L~~--------------~---~~~i~~l~~~e~~~~~~---~l~i~~~p~~h~ 206 (225)
||++..+.. +++. . |++|+++...|.+.+.+ +++|+|.++-|.
T Consensus 81 VYAT~PV~~mG~m~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynAGhm 151 (764)
T KOG1135|consen 81 VYATLPVIKMGQMFMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNAGHM 151 (764)
T ss_pred EEEecchhhhhhhhHHHHHhcccccccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeecCCCc
Confidence 999875422 1111 1 46789999999999865 589999999886
No 43
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=97.73 E-value=0.00018 Score=63.63 Aligned_cols=107 Identities=21% Similarity=0.172 Sum_probs=67.0
Q ss_pred eEEEEE--c-CcEEEEEECCeEEEEcCccC--CCcccccccccccCccccCccCCCCCCCccEEEEeCCCCCCCChhhHH
Q 027321 79 FKLTYL--E-GNSWLWDLDGVKVLVDPILV--GNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLK 153 (225)
Q Consensus 79 ~~it~l--G-hss~lI~~~g~~ILiDP~~s--~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~ 153 (225)
.++..+ | ..+++++.++.++++|..-. .... ++++ .-..+.+||.+++||.|.||.+ .+.
T Consensus 44 ~~~~~lDvGqg~a~li~~~~~~~l~dtg~~~~~~~i--ip~L-----------k~~GV~~iD~lIlTH~d~DHiG--g~~ 108 (293)
T COG2333 44 WKVHMLDVGQGLATLIRSEGKTILYDTGNSMGQDVI--IPYL-----------KSLGVRKLDQLILTHPDADHIG--GLD 108 (293)
T ss_pred ceEEEEEcCCCeEEEEeeCCceEEeecCcccCceee--hhhH-----------hHcCCccccEEEeccCCccccC--CHH
Confidence 455554 5 45899999999999998431 1111 2233 1234558999999999999996 566
Q ss_pred Hhhh--cCCCcEEEEccchHHH--HhhhcCCCeEcCCCceEEECCCEEEEEE
Q 027321 154 PLSK--MSPNLKVIATPNAKTL--LDPLFQNNPVRALKLKVEMVPNSESKRL 201 (225)
Q Consensus 154 ~L~~--~~p~~~v~~~~~~~~~--L~~~~~~i~~l~~~e~~~~~~~l~i~~~ 201 (225)
.+.+ +.|.+-+..+...... +++....+..+.-|+...+++ +.+...
T Consensus 109 ~vl~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~-~~f~vl 159 (293)
T COG2333 109 EVLKTIKVPELWIYAGSDSTSTFVLRDAGIPVRSCKAGDSWQWGG-VVFQVL 159 (293)
T ss_pred HHHhhCCCCcEEEeCCCCccchhhhhhcCCceeccccCceEEECC-eEEEEE
Confidence 7776 3333333333322111 222234567788899999987 766654
No 44
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=97.39 E-value=0.00053 Score=56.11 Aligned_cols=87 Identities=18% Similarity=0.185 Sum_probs=53.4
Q ss_pred CCeEEEEcCccCCCcccccccccccCccccCccCCCCCC-CccEEEEeCCCCCCCChhhHHHhhhcCCCcEEEEccchHH
Q 027321 94 DGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLP-QVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKT 172 (225)
Q Consensus 94 ~g~~ILiDP~~s~~~~~p~~~~~~~~~~~~~~~~~~~lp-~iD~VlISH~H~DHld~~tl~~L~~~~p~~~v~~~~~~~~ 172 (225)
.|+.+|||||+.. ++--.+. +.+|. ++-+-+=||.|.||+--. ..|+...|.+ ..
T Consensus 31 ~~~AviIDPV~et-~~RD~ql-------------ikdLgl~LiYa~NTH~HADHiTGt--g~Lkt~~pg~--------kS 86 (237)
T KOG0814|consen 31 TGKAVIIDPVLET-VSRDAQL-------------IKDLGLDLIYALNTHVHADHITGT--GLLKTLLPGC--------KS 86 (237)
T ss_pred CCceEEecchhhc-ccchHHH-------------HHhcCceeeeeecceeeccccccc--chHHHhcccH--------HH
Confidence 5799999999763 2201111 23444 566777899999999421 2233333333 33
Q ss_pred HHhhh--cCCCeEcCCCceEEECC-CEEEEEEecC
Q 027321 173 LLDPL--FQNNPVRALKLKVEMVP-NSESKRLLAQ 204 (225)
Q Consensus 173 ~L~~~--~~~i~~l~~~e~~~~~~-~l~i~~~p~~ 204 (225)
.+.+. .+.-..++.|+.+++++ .+++.++||+
T Consensus 87 Vis~~SGakAD~~l~~Gd~i~~G~~~le~ratPGH 121 (237)
T KOG0814|consen 87 VISSASGAKADLHLEDGDIIEIGGLKLEVRATPGH 121 (237)
T ss_pred HhhhccccccccccCCCCEEEEccEEEEEecCCCC
Confidence 33333 23345578999999997 4567889986
No 45
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=97.21 E-value=0.00079 Score=58.99 Aligned_cols=88 Identities=7% Similarity=0.023 Sum_probs=53.2
Q ss_pred CCCCccEEEEeCCCCCCCC-hhhH---HHhh-hcCCCcEEEEccchHHHHhhh---c---------C-CCeEcCCCceEE
Q 027321 130 DLPQVDCLLITQSLDDHCH-LKTL---KPLS-KMSPNLKVIATPNAKTLLDPL---F---------Q-NNPVRALKLKVE 191 (225)
Q Consensus 130 ~lp~iD~VlISH~H~DHld-~~tl---~~L~-~~~p~~~v~~~~~~~~~L~~~---~---------~-~i~~l~~~e~~~ 191 (225)
.+..++.|+|||.|.||+. +..+ +.+. .+-+...||.|++..+..+++ + + +...+..++.+.
T Consensus 37 k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 116 (277)
T TIGR02650 37 KVAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGNAAEEETSEFIKAANEDLFFFFNHHLEEEDERFF 116 (277)
T ss_pred hHhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchhHHHHHHHHHHHHhhhhhccCcccCCCCCCcEEE
Confidence 3447899999999999994 3222 1111 122346799999866555522 1 1 222333445455
Q ss_pred ECC---CEEEEEEecCCcC--CCCCeEEEEe
Q 027321 192 MVP---NSESKRLLAQFWV--LPGNALRMGI 217 (225)
Q Consensus 192 ~~~---~l~i~~~p~~h~~--~~~~Gy~l~~ 217 (225)
..+ .+.|.+++..|-- ....||+|.-
T Consensus 117 ~r~~~~~~~V~~f~t~H~v~~~~s~GY~~~~ 147 (277)
T TIGR02650 117 LDAAGFFKRVQPFFRKHHASEESFFGHHFEE 147 (277)
T ss_pred eecCCccEEEecCccccccCccCccCeEEEE
Confidence 542 3788899888872 3467998863
No 46
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=96.85 E-value=0.0012 Score=54.23 Aligned_cols=108 Identities=16% Similarity=0.134 Sum_probs=55.7
Q ss_pred EcCcEEEEEECCeEEEEcCccCCCcccccccccccCccccCccCCCCCCCccEEEEeCCCCCCCChhhHHHhhhcCCCcE
Q 027321 84 LEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLK 163 (225)
Q Consensus 84 lGhss~lI~~~g~~ILiDP~~s~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~~~p~~~ 163 (225)
++-+|+++...+-+|||||+--. +. -..+ +..+..+++|+||| .||+ ..-+..++++ .++
T Consensus 21 ~dfng~~~~~p~GnilIDP~~ls-~~-~~~~-------------l~a~ggv~~IvLTn--~dHv--R~A~~ya~~~-~a~ 80 (199)
T PF14597_consen 21 LDFNGHAWRRPEGNILIDPPPLS-AH-DWKH-------------LDALGGVAWIVLTN--RDHV--RAAEDYAEQT-GAK 80 (199)
T ss_dssp EEEEEEEE--TT--EEES------HH-HHHH-------------HHHTT--SEEE-SS--GGG---TTHHHHHHHS---E
T ss_pred cCceeEEEEcCCCCEEecCcccc-HH-HHHH-------------HHhcCCceEEEEeC--ChhH--hHHHHHHHHh-CCe
Confidence 44577888888999999994211 00 0112 33456899999996 6999 4556777776 699
Q ss_pred EEEccchHHHHhhhcCCCeEcCCCceEEECCCEEEEEEecCCcCCCCCeEEEE
Q 027321 164 VIATPNAKTLLDPLFQNNPVRALKLKVEMVPNSESKRLLAQFWVLPGNALRMG 216 (225)
Q Consensus 164 v~~~~~~~~~L~~~~~~i~~l~~~e~~~~~~~l~i~~~p~~h~~~~~~Gy~l~ 216 (225)
|+++...++.+- +.--..++.|+++ ++| +++..+||++-++ +..++++
T Consensus 81 i~~p~~d~~~~p--~~~D~~l~dge~i-~~g-~~vi~l~G~ktpG-E~ALlle 128 (199)
T PF14597_consen 81 IYGPAADAAQFP--LACDRWLADGEEI-VPG-LWVIHLPGSKTPG-ELALLLE 128 (199)
T ss_dssp EEEEGGGCCC-S--S--SEEE-TT-BS-STT-EEEEEE-SSSSTT-EEEEEET
T ss_pred eeccHHHHhhCC--CCCccccccCCCc-cCc-eEEEEcCCCCCCc-eeEEEec
Confidence 999987542211 2233567777733 355 9999999987544 3344443
No 47
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=94.58 E-value=0.01 Score=57.74 Aligned_cols=93 Identities=19% Similarity=0.225 Sum_probs=54.5
Q ss_pred CCCeEEEEEcC-----------cEEEEEECCeE-EEEcCccCCCcccccccccccCccccC-ccCCCCCCCccEEEEeCC
Q 027321 76 TDVFKLTYLEG-----------NSWLWDLDGVK-VLVDPILVGNLDFGIPWLFDAGKKFLK-SFQLSDLPQVDCLLITQS 142 (225)
Q Consensus 76 ~~~~~it~lGh-----------ss~lI~~~g~~-ILiDP~~s~~~~~p~~~~~~~~~~~~~-~~~~~~lp~iD~VlISH~ 142 (225)
.+.++|.+||. ++++++..... ||.|. |... +..+ .+++- ......+.++-+|+|||.
T Consensus 440 ~~~~eIi~LGTGSaiPskyRNVSS~lv~i~~~~~IlLDC---GEgT--lgql----~R~YG~~~~~~~lr~LraI~ISHl 510 (746)
T KOG2121|consen 440 KKDPEIIFLGTGSAIPSKYRNVSSILVRIDSDDSILLDC---GEGT--LGQL----VRHYGVENVDTALRKLRAIFISHL 510 (746)
T ss_pred cCCcEEEEecCCccCCCcccceEEEEEeccCCccEEeec---CCch--HHHH----HHHhhhcchHHHHHhHHHHHHHhh
Confidence 35789999994 78899986554 99995 5444 2222 12221 111233457899999999
Q ss_pred CCCCC-ChhhHHH-hhhcC---CCcEEE--EccchHHHHhhh
Q 027321 143 LDDHC-HLKTLKP-LSKMS---PNLKVI--ATPNAKTLLDPL 177 (225)
Q Consensus 143 H~DHl-d~~tl~~-L~~~~---p~~~v~--~~~~~~~~L~~~ 177 (225)
|.||- ++.++.+ +.+.. ..-+++ .+....++|+.+
T Consensus 511 HADHh~Gl~~vL~~r~k~~k~~~~~pl~vv~P~ql~~wl~~y 552 (746)
T KOG2121|consen 511 HADHHLGLISVLQARTKLLKGVENSPLLVVAPRQLKKWLQEY 552 (746)
T ss_pred cccccccHHHHHHHHHHhccccccCceEEeChHHHHHHHHHH
Confidence 99976 5444432 22221 123333 333367777765
No 48
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.53 E-value=0.085 Score=49.55 Aligned_cols=71 Identities=18% Similarity=0.209 Sum_probs=41.8
Q ss_pred cEEEEEECCeEEEEcCccCCCcc-cccccccccCccccCccCCCCCC--CccEEEEeCCCCCCCC-hhhH-HHhhhcCCC
Q 027321 87 NSWLWDLDGVKVLVDPILVGNLD-FGIPWLFDAGKKFLKSFQLSDLP--QVDCLLITQSLDDHCH-LKTL-KPLSKMSPN 161 (225)
Q Consensus 87 ss~lI~~~g~~ILiDP~~s~~~~-~p~~~~~~~~~~~~~~~~~~~lp--~iD~VlISH~H~DHld-~~tl-~~L~~~~p~ 161 (225)
|-.+|+.+.--|+|||-.+.... .-.... .+.++ +|-+|+-||.|.||++ .++| .+-.-+...
T Consensus 127 NITfveGdtg~IViDpL~t~~tA~aAldl~------------~~~~g~rPV~aVIYtHsH~DHfGGVkGiv~eadV~sGk 194 (655)
T COG2015 127 NITFVEGDTGWIVIDPLVTPETAKAALDLY------------NQHRGQRPVVAVIYTHSHSDHFGGVKGIVSEADVKSGK 194 (655)
T ss_pred ceEEEcCCcceEEEcccCCcHHHHHHHHHH------------HHhcCCCCeEEEEeecccccccCCeeeccCHHHcccCc
Confidence 44566766678999997664221 001111 11122 6899999999999995 2222 111113347
Q ss_pred cEEEEccc
Q 027321 162 LKVIATPN 169 (225)
Q Consensus 162 ~~v~~~~~ 169 (225)
++|++|.+
T Consensus 195 V~iiAP~G 202 (655)
T COG2015 195 VQIIAPAG 202 (655)
T ss_pred eeEecchh
Confidence 89999986
No 49
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=92.33 E-value=0.32 Score=45.78 Aligned_cols=70 Identities=16% Similarity=0.079 Sum_probs=53.1
Q ss_pred CccEEEEeCCCCCCCChhhHHHhhhcCCCcEEEEccchHHHHhhh----cCCCeEcCCCceEEECCCEEEEEEecCCcCC
Q 027321 133 QVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPL----FQNNPVRALKLKVEMVPNSESKRLLAQFWVL 208 (225)
Q Consensus 133 ~iD~VlISH~H~DHld~~tl~~L~~~~p~~~v~~~~~~~~~L~~~----~~~i~~l~~~e~~~~~~~l~i~~~p~~h~~~ 208 (225)
..-+=++||.|.||. ..| .+.+-.-++||++..+.++... ..-+..++-+|.+.+.+ ++++++++-|=++
T Consensus 112 ~~s~yFLsHFHSDHy--~GL---~~sW~~p~lYCS~ita~Lv~~~~~v~~~~i~~l~l~~~~~i~~-~~vt~ldAnHCPG 185 (481)
T KOG1361|consen 112 GCSAYFLSHFHSDHY--IGL---TKSWSHPPLYCSPITARLVPLKVSVTKQSIQALDLNQPLEIPG-IQVTLLDANHCPG 185 (481)
T ss_pred ccceeeeeccccccc--ccc---cccccCCcccccccchhhhhhhcccChhhceeecCCCceeecc-eEEEEeccccCCC
Confidence 567789999999995 233 3333233499999877777654 35688999999999997 9999999988644
No 50
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.94 E-value=1.3 Score=39.22 Aligned_cols=91 Identities=19% Similarity=0.074 Sum_probs=52.7
Q ss_pred cEEEEEECCeEEEEcCccCCCcccccccccccCccccCccCCCCCCCccEEEEeCCCCCCCChhhHHHhhhcCCCcEEEE
Q 027321 87 NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIA 166 (225)
Q Consensus 87 ss~lI~~~g~~ILiDP~~s~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~~~p~~~v~~ 166 (225)
+..++..++..+++|-.++. +. ++ --.+..||.|++||.|.+|++- +..+. ..++
T Consensus 96 ~~tl~~d~~~v~v~~~gls~--------la----k~-----~vt~d~i~~vv~t~~~~~hlgn--~~~f~----~sp~-- 150 (302)
T KOG4736|consen 96 QITLVVDGGDVVVVDTGLSV--------LA----KE-----GVTLDQIDSVVITHKSPGHLGN--NNLFP----QSPI-- 150 (302)
T ss_pred ccceeecCCceEEEecCCch--------hh----hc-----CcChhhcceeEEeccCcccccc--ccccc----CCHH--
Confidence 33456667888999964431 11 11 1122379999999999999962 22121 2222
Q ss_pred ccchHHHHhhh--cCCCeEcCCCceEEECCCEEEEEEecCC
Q 027321 167 TPNAKTLLDPL--FQNNPVRALKLKVEMVPNSESKRLLAQF 205 (225)
Q Consensus 167 ~~~~~~~L~~~--~~~i~~l~~~e~~~~~~~l~i~~~p~~h 205 (225)
....++.. .---++++....+++++++.|..+||+-
T Consensus 151 ---l~~s~e~~gr~~~pt~l~e~~~~~l~~~~~V~~TpGht 188 (302)
T KOG4736|consen 151 ---LYHSMEYIGRHVTPTELDERPYLKLSPNVEVWKTPGHT 188 (302)
T ss_pred ---HhhhhhhcCCccChhhhccCCccccCCceeEeeCCCCC
Confidence 11111111 1112467777778887778899999863
No 51
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=82.71 E-value=1.1 Score=40.51 Aligned_cols=43 Identities=21% Similarity=0.157 Sum_probs=28.9
Q ss_pred CccEEEEeCCCCCCCChhhHHHhhhcC-----CCcEEEEccchHHHHhhh
Q 027321 133 QVDCLLITQSLDDHCHLKTLKPLSKMS-----PNLKVIATPNAKTLLDPL 177 (225)
Q Consensus 133 ~iD~VlISH~H~DHld~~tl~~L~~~~-----p~~~v~~~~~~~~~L~~~ 177 (225)
.|...+|||.|-||+. ++-.-.... ...++|..+.+.+.|+..
T Consensus 79 ~I~~ylItH~HLDHi~--gLvinsp~~~~~~~~~K~i~gl~~ti~alk~h 126 (335)
T PF02112_consen 79 HIKGYLITHPHLDHIA--GLVINSPEDYLPNSSPKTIYGLPSTIEALKNH 126 (335)
T ss_pred hhheEEecCCchhhHH--HHHhcCcccccccCCCCcEEECHHHHHHHHHc
Confidence 6899999999999995 332111000 235688888888888763
No 52
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=78.47 E-value=1.1 Score=44.02 Aligned_cols=48 Identities=23% Similarity=0.302 Sum_probs=34.8
Q ss_pred cEEEEEECCeEEEEcCccCCCcccccccccccCccccCccCCCCCCCccEEEEeCCCCCCCC
Q 027321 87 NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCH 148 (225)
Q Consensus 87 ss~lI~~~g~~ILiDP~~s~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld 148 (225)
-+.|+-.+|.+||++= ++.+.+ +++-| +..|.+||+|||||--.|.|.
T Consensus 49 daALFavnGf~iLv~G-gserKS-~fwkl------------VrHldrVdaVLLthpg~dNLp 96 (934)
T KOG3592|consen 49 DAALFAVNGFNILVNG-GSERKS-CFWKL------------VRHLDRVDAVLLTHPGADNLP 96 (934)
T ss_pred cceeEeecceEEeecC-Cccccc-chHHH------------HHHHhhhhhhhhcccccCccc
Confidence 4567788999999993 445555 43222 334568999999999999994
No 53
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=70.89 E-value=9.5 Score=33.77 Aligned_cols=124 Identities=10% Similarity=-0.007 Sum_probs=64.2
Q ss_pred eEEEEEcCcEEEEEEC-CeEEEEcCccCCCcccccccccccCccccC--cc---CCCCCCCccEEEEeCCCCCCCChhhH
Q 027321 79 FKLTYLEGNSWLWDLD-GVKVLVDPILVGNLDFGIPWLFDAGKKFLK--SF---QLSDLPQVDCLLITQSLDDHCHLKTL 152 (225)
Q Consensus 79 ~~it~lGhss~lI~~~-g~~ILiDP~~s~~~~~p~~~~~~~~~~~~~--~~---~~~~lp~iD~VlISH~H~DHld~~tl 152 (225)
+....+.|-+-.|+.. +..+=||||.+. +-.- ..... ...+. +. ..+-...|.--+|||.|-||+.-.-|
T Consensus 56 l~~~~~~hds~p~el~~d~~Lsv~~g~s~-~l~~-~~~~~--~e~~~~A~~~~~~y~~~Q~I~~y~ITH~HLDHIsGlVi 131 (356)
T COG5212 56 LTSYLIRHDSQPLELGLDAGLSVLPGISR-ALEK-GHFAA--IEDAMAAPLTRQGYIFRQSINSYFITHAHLDHISGLVI 131 (356)
T ss_pred cchhhhhccchhhhhhhccCcccccchHH-HHHh-hhhhh--hhhhhhcchhhhhhhhhhhhhheEeccccccchhceee
Confidence 3444456777777652 455667887663 1100 00000 00000 00 01112467778999999999952222
Q ss_pred --HHhhhcCCCcEEEEccchHHHHhhh-cC---------------CCeEcCCCceEEECC-CEEEEEEecCCcC
Q 027321 153 --KPLSKMSPNLKVIATPNAKTLLDPL-FQ---------------NNPVRALKLKVEMVP-NSESKRLLAQFWV 207 (225)
Q Consensus 153 --~~L~~~~p~~~v~~~~~~~~~L~~~-~~---------------~i~~l~~~e~~~~~~-~l~i~~~p~~h~~ 207 (225)
....++. ..+++.-+.+...|++. |. +...+++-+...+.= .+++.++|-.|..
T Consensus 132 nSp~~~~qk-kkTI~gl~~tIDvL~khvFN~lvWP~lt~~gs~~~~~qvv~P~~~~slt~t~l~~~pfpv~Hg~ 204 (356)
T COG5212 132 NSPDDSKQK-KKTIYGLADTIDVLRKHVFNWLVWPNLTDSGSGTYRMQVVRPAQSLSLTLTRLTGEPFPVSHGK 204 (356)
T ss_pred cCccccccC-CceEEechhHHHHHHHHhhcccccCCcccccCceEEEEEeChhHeeeeeeeeecceeeeccCCc
Confidence 1223332 24577777788888764 21 233445544433321 2667788888874
No 54
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=66.10 E-value=2.4 Score=36.97 Aligned_cols=60 Identities=5% Similarity=-0.247 Sum_probs=43.6
Q ss_pred EEEECCeEEEEcCccCCCcccccccccccCccccCccCCCCCCCccEEEEeCCCCCCCChhhH
Q 027321 90 LWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTL 152 (225)
Q Consensus 90 lI~~~g~~ILiDP~~s~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl 152 (225)
+....+-..+.||.|+.. + |..+.++.++ +-.+.+++.++.++.++++|+|+||.++.++
T Consensus 98 ~~~~tdpvf~d~~if~s~-g-Pkry~~pp~~-~~~~p~~d~~~vsh~h~dhld~~~~~~~~~~ 157 (343)
T KOG3798|consen 98 VKFVTDPVWADRASFTSF-G-PKRYRPPPMK-LEDLPDLDFAVVSHDHYDHLDADAVKKITDR 157 (343)
T ss_pred cEEecchhhccchhhccc-C-cccccCCchh-hccCCCCceeccccccccccchHHHHhhhcc
Confidence 345567889999999876 5 7666654332 2224567888899999999999999986543
No 55
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=49.59 E-value=9.3 Score=34.81 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=30.3
Q ss_pred CccEEEE--eCCCCCCCChhhHHHhhhcCCCcEEEEccc
Q 027321 133 QVDCLLI--TQSLDDHCHLKTLKPLSKMSPNLKVIATPN 169 (225)
Q Consensus 133 ~iD~VlI--SH~H~DHld~~tl~~L~~~~p~~~v~~~~~ 169 (225)
.+|+|+| +|.|..|+- ..++.+++.+|+++|++..-
T Consensus 120 gvD~ivID~a~g~s~~~~-~~ik~ik~~~~~~~viaGNV 157 (352)
T PF00478_consen 120 GVDVIVIDSAHGHSEHVI-DMIKKIKKKFPDVPVIAGNV 157 (352)
T ss_dssp T-SEEEEE-SSTTSHHHH-HHHHHHHHHSTTSEEEEEEE
T ss_pred CCCEEEccccCccHHHHH-HHHHHHHHhCCCceEEeccc
Confidence 6798888 899999994 68999999999999988653
No 56
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=46.83 E-value=17 Score=33.06 Aligned_cols=37 Identities=14% Similarity=0.253 Sum_probs=30.6
Q ss_pred CCccEEEE--eCCCCCCCChhhHHHhhhcCCCcEEEEccc
Q 027321 132 PQVDCLLI--TQSLDDHCHLKTLKPLSKMSPNLKVIATPN 169 (225)
Q Consensus 132 p~iD~VlI--SH~H~DHld~~tl~~L~~~~p~~~v~~~~~ 169 (225)
+.+|+|+| +|+|.++.= ..++.+++++|++.+++..-
T Consensus 121 ~g~D~iviD~AhGhs~~~i-~~ik~ik~~~P~~~vIaGNV 159 (346)
T PRK05096 121 PALNFICIDVANGYSEHFV-QFVAKAREAWPDKTICAGNV 159 (346)
T ss_pred CCCCEEEEECCCCcHHHHH-HHHHHHHHhCCCCcEEEecc
Confidence 46888886 999999983 68999999999999887654
No 57
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=46.29 E-value=38 Score=22.97 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=32.2
Q ss_pred CcEEEEEECCeEEEE-cCccCCCcccccccccccCccccCccCCCCCCCccEEEEeCCC-CCCCC
Q 027321 86 GNSWLWDLDGVKVLV-DPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSL-DDHCH 148 (225)
Q Consensus 86 hss~lI~~~g~~ILi-DP~~s~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H-~DHld 148 (225)
|.|+++..+.++.|+ +. +... +.+. .. .--.+.++..|++|+.. +|+++
T Consensus 12 ~p~l~l~~d~~rYlFGn~---gEGt---QR~~-------~e-~~ikl~kl~~IFlT~~~~w~~~G 62 (63)
T PF13691_consen 12 GPSLLLFFDSRRYLFGNC---GEGT---QRAC-------NE-HKIKLSKLNDIFLTGLSSWENIG 62 (63)
T ss_pred CCEEEEEeCCceEEeccC---CcHH---HHHH-------HH-cCCCccccceEEECCCCcccccC
Confidence 478999999999998 64 3221 1111 00 12234689999999999 88764
No 58
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=40.31 E-value=23 Score=32.15 Aligned_cols=35 Identities=17% Similarity=0.369 Sum_probs=28.8
Q ss_pred CCccEEEE--eCCCCCCCChhhHHHhhhcCCCcEEEEc
Q 027321 132 PQVDCLLI--TQSLDDHCHLKTLKPLSKMSPNLKVIAT 167 (225)
Q Consensus 132 p~iD~VlI--SH~H~DHld~~tl~~L~~~~p~~~v~~~ 167 (225)
+.+|+|+| +|+|.+++= ..|+.+++++|+..++..
T Consensus 120 ~~~d~iviD~AhGhs~~~i-~~ik~ir~~~p~~~viaG 156 (343)
T TIGR01305 120 PQLKFICLDVANGYSEHFV-EFVKLVREAFPEHTIMAG 156 (343)
T ss_pred CCCCEEEEECCCCcHHHHH-HHHHHHHhhCCCCeEEEe
Confidence 46788886 999999983 579999999998888776
No 59
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=24.83 E-value=2.3e+02 Score=25.57 Aligned_cols=57 Identities=12% Similarity=0.074 Sum_probs=37.2
Q ss_pred hhhcCCCcEEEEccc-hH--HHHhhh--cCCCeEcCCC-ceEEECCCEEEEEEecCCcCCCCCeEEE
Q 027321 155 LSKMSPNLKVIATPN-AK--TLLDPL--FQNNPVRALK-LKVEMVPNSESKRLLAQFWVLPGNALRM 215 (225)
Q Consensus 155 L~~~~p~~~v~~~~~-~~--~~L~~~--~~~i~~l~~~-e~~~~~~~l~i~~~p~~h~~~~~~Gy~l 215 (225)
|.++ .+++|++.+. .. +.+... -.+++.+|.| |...+.-+++|..+.+..+ +||++|
T Consensus 122 la~~-~~~~V~V~~dR~~aa~~l~~~~~~~dviIlDDGfQH~~L~RDleIvl~D~~~~---Gng~lL 184 (338)
T PRK01906 122 IARR-TDAPVWVCPDRVAAAQALLAAHPGVDVIVSDDGLQHYRLARDVEIVVFDHRLG---GNGFLL 184 (338)
T ss_pred hhhc-CCCeEEEeCcHHHHHHHHHHhCCCCCEEEECCCCccchhcCCcEEEEEcCCCC---CCCccc
Confidence 3434 3789999987 22 223222 2468889888 7778865699999987443 666655
No 60
>PF11319 DUF3121: Protein of unknown function (DUF3121); InterPro: IPR017738 Proteins in this entry, including VC_A0118 from Vibrio cholerae O1 biovar eltor str. N16961, are restricted to a subset of bacteria with the type VI secretion system, and are encoded among the type VI-associated pathogenicity islands. However, many species with type VI secretion lack a member of this family, suggesting that members of this family may be targets rather than components of the type VI secretion system.
Probab=22.13 E-value=78 Score=25.91 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=16.9
Q ss_pred EecCCcCCCCCeEEEEeCCee
Q 027321 201 LLAQFWVLPGNALRMGISSIL 221 (225)
Q Consensus 201 ~p~~h~~~~~~Gy~l~~~~~~ 221 (225)
...++|..+++||+|+.|-.|
T Consensus 122 ~~~~~W~~~d~G~vl~sgRGl 142 (183)
T PF11319_consen 122 AFTQNWRSRDNGYVLESGRGL 142 (183)
T ss_pred ccccceEEcCCCeEEEcCCCc
Confidence 445789889999999998544
No 61
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=20.97 E-value=60 Score=29.24 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=26.2
Q ss_pred ccEEEE--eCCCCCCCChhhHHHhhhcCCCcEEEEc
Q 027321 134 VDCLLI--TQSLDDHCHLKTLKPLSKMSPNLKVIAT 167 (225)
Q Consensus 134 iD~VlI--SH~H~DHld~~tl~~L~~~~p~~~v~~~ 167 (225)
+|+|.| ||.|...+. ..|+.+++++|+.+|++.
T Consensus 112 ~d~i~iD~a~gh~~~~~-e~I~~ir~~~p~~~vi~g 146 (326)
T PRK05458 112 PEYITIDIAHGHSDSVI-NMIQHIKKHLPETFVIAG 146 (326)
T ss_pred CCEEEEECCCCchHHHH-HHHHHHHhhCCCCeEEEE
Confidence 388877 887777774 578999999998888874
Done!