BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027323
(225 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A33|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At2g37210
pdb|2A33|B Chain B, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At2g37210
pdb|2Q4O|A Chain A, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At2g37210
pdb|2Q4O|B Chain B, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At2g37210
Length = 215
Score = 307 bits (786), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 157/206 (76%), Positives = 180/206 (87%), Gaps = 1/206 (0%)
Query: 15 KSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGG 74
KS+F+R+CVFCGSS GK SYQ AA+ LG +LV RNIDLVYGGGSIGL GLVSQAV+DGG
Sbjct: 10 KSKFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDLVYGGGSIGLXGLVSQAVHDGG 69
Query: 75 RHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEV 134
RHV+G+IPKTL PRE+TG+TVGEV+AV+ HQRKAE A+ +DAFIALPGGYGTLEELLEV
Sbjct: 70 RHVIGIIPKTLXPRELTGETVGEVRAVADXHQRKAEXAKHSDAFIALPGGYGTLEELLEV 129
Query: 135 ITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLE 194
ITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAV+EGFI+P AR IIVSA TA EL+ KLE
Sbjct: 130 ITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVSAPTAKELVKKLE 189
Query: 195 EYVPKHSGVASNLSWEMEQQLGYTNK 220
EY P H VA+ L WE E ++GY+++
Sbjct: 190 EYAPCHERVATKLCWEXE-RIGYSSE 214
>pdb|1YDH|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At5g11950
pdb|1YDH|B Chain B, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At5g11950
pdb|2Q4D|A Chain A, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At5g11950
pdb|2Q4D|B Chain B, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At5g11950
Length = 216
Score = 225 bits (573), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 127/208 (61%), Positives = 160/208 (76%)
Query: 15 KSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGG 74
+SRF+++CVFCGS G + AAI+LG +LV+R IDLVYGGGS+GL GL+S+ VY+GG
Sbjct: 6 RSRFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLXGLISRRVYEGG 65
Query: 75 RHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEV 134
HVLG+IPK L P EI+G+TVG+V+ V+ H+RKA A++A+AFIALPGGYGT EELLE
Sbjct: 66 LHVLGIIPKALXPIEISGETVGDVRVVADXHERKAAXAQEAEAFIALPGGYGTXEELLEX 125
Query: 135 ITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLE 194
ITW+QLGIH K VGLLNVDGYYN+LL+ D V+EGFI P AR I+VSA TA EL K E
Sbjct: 126 ITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAPTAKELXEKXE 185
Query: 195 EYVPKHSGVASNLSWEMEQQLGYTNKSD 222
EY P H VAS+ SW++E+ Y + +
Sbjct: 186 EYTPSHXHVASHESWKVEELGDYPGQEN 213
>pdb|1T35|A Chain A, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|B Chain B, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|C Chain C, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|D Chain D, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|E Chain E, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|F Chain F, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|G Chain G, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|H Chain H, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
Length = 191
Score = 151 bits (382), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 108/178 (60%)
Query: 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVL 78
K +CVF GS+PG + +Y+ A +LG E+ I LVYGG +GL G ++ A+ + G +
Sbjct: 2 KTICVFAGSNPGGNEAYKRKAAELGVYXAEQGIGLVYGGSRVGLXGTIADAIXENGGTAI 61
Query: 79 GVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWA 138
GV P L E+ + E+ V+G H+RKA+ + AD FI+ PGG+GT EEL EV+ WA
Sbjct: 62 GVXPSGLFSGEVVHQNLTELIEVNGXHERKAKXSELADGFISXPGGFGTYEELFEVLCWA 121
Query: 139 QLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEEY 196
Q+GIH KP+GL NV+GY+ + ++ EGF + +I S+ ELI + + Y
Sbjct: 122 QIGIHQKPIGLYNVNGYFEPXXKXVKYSIQEGFSNESHLKLIHSSSRPDELIEQXQNY 179
>pdb|3QUA|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
And Possible Molybdenum Cofactor Protein From
Mycobacterium Smegmatis
pdb|3QUA|B Chain B, Crystal Structure Of A Putative Uncharacterized Protein
And Possible Molybdenum Cofactor Protein From
Mycobacterium Smegmatis
Length = 199
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 95/159 (59%), Gaps = 1/159 (0%)
Query: 15 KSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGG 74
+ R VCV+C S P +LAA ++G + R LV GGG++ MG V+QA G
Sbjct: 19 QDRQWAVCVYCASGPTHPELLELAA-EVGSSIAARGWTLVSGGGNVSAMGAVAQAARAKG 77
Query: 75 RHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEV 134
H +GVIPK L+ RE+ E+ M +RK EM ++DAFIALPGG GTLEE E
Sbjct: 78 GHTVGVIPKALVHRELADVDAAELIVTDTMRERKREMEHRSDAFIALPGGIGTLEEFFEA 137
Query: 135 ITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIA 173
T LG+HDKP+ LL+ G+Y+ LL+++ V G+++
Sbjct: 138 WTAGYLGMHDKPLILLDPFGHYDGLLTWLRGLVPTGYVS 176
>pdb|3SBX|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|B Chain B, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|C Chain C, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|D Chain D, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|E Chain E, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|F Chain F, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|G Chain G, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|H Chain H, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
Length = 189
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 92/164 (56%), Gaps = 3/164 (1%)
Query: 21 VCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80
V V+C ++P +LA + R LV+GGG + MG VS A G +GV
Sbjct: 16 VAVYCAAAPTHPELLELAGAVG-AAIAARGWTLVWGGGHVSAMGAVSSAARAHGGWTVGV 74
Query: 81 IPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQL 140
IPK L+ RE+ E+ M +RK M +A+AFI LPGG GTL+ELL+V T L
Sbjct: 75 IPKMLVHRELADHDADELVVTETMWERKQVMEDRANAFITLPGGVGTLDELLDVWTEGYL 134
Query: 141 GIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAA--RYIIVS 182
G+HDK + +L+ G+++ L +++ + D G+++ A R I+V
Sbjct: 135 GMHDKSIVVLDPWGHFDGLRAWLSELADTGYVSRTAMERLIVVD 178
>pdb|1WEK|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|C Chain C, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|D Chain D, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|E Chain E, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|F Chain F, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
Length = 217
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 107 RKAEMARQADAFIALPGGYGTLEELLEVITWAQL-GIHDKPVGLLNVDGYYNSLLSFIDK 165
RK R A F+ LPGG+GTL+EL EV+ Q +H PV LL+ GY+ L+ ++
Sbjct: 124 RKVLFVRYAVGFVFLPGGFGTLDELSEVLVLLQTEKVHRFPVFLLD-RGYWEGLVRWLAF 182
Query: 166 AVDEGFIAPAARYIIVSAQTAHELICKLEEYVP 198
D+ + P + E++ L+ P
Sbjct: 183 LRDQKAVGPEDLQLFRLTDEPEEVVQALKAEAP 215
>pdb|1RCU|A Chain A, X-Ray Structure Of Tm1055 Northeast Structural Genomics
Consortium Target Vt76
pdb|1RCU|B Chain B, X-Ray Structure Of Tm1055 Northeast Structural Genomics
Consortium Target Vt76
pdb|1RCU|C Chain C, X-Ray Structure Of Tm1055 Northeast Structural Genomics
Consortium Target Vt76
pdb|1RCU|D Chain D, X-Ray Structure Of Tm1055 Northeast Structural Genomics
Consortium Target Vt76
Length = 195
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 73/153 (47%), Gaps = 17/153 (11%)
Query: 14 LKSRFKRVCVFCGSSP-GKSPSYQLAAI--QLGKQLVERNIDLVYGGGSIGLMGLVSQAV 70
+ K+V V S P KSP +L I +LG+ L ++ LV+ GG G+ LVSQ V
Sbjct: 19 FQGHXKKVVVVGYSGPVNKSPVSELRDICLELGRTLAKKGY-LVFNGGRDGVXELVSQGV 77
Query: 71 YDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGM--HQRKAEMARQADAFIALPGGYGTL 128
+ G V+G++P E G+ V +G+ R + R AD +++ G GT
Sbjct: 78 REAGGTVVGILPD-----EEAGNPYLSVAVKTGLDFQXRSFVLLRNADVVVSIGGEIGT- 131
Query: 129 EELLEVITWAQLGIHDKPVGLLNVDGYYNSLLS 161
+E++ LG KPV LL G + +S
Sbjct: 132 --AIEILGAYALG---KPVILLRGTGGWTDRIS 159
>pdb|1WEH|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
Tt1887 From Thermus Thermophilus Hb8
pdb|1WEH|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein
Tt1887 From Thermus Thermophilus Hb8
Length = 171
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 8/146 (5%)
Query: 19 KRVCVFCGSSPGKSPSYQLAA--IQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRH 76
+ + VF S SP L A ++ G+ L E L GG G L ++ V G
Sbjct: 2 RLLAVFVSSR--LSPEDPLYARWVRYGEVLAEEGFGLACGGYQGGXEAL-ARGVKAKGGL 58
Query: 77 VLGVIPKTLMPREITGDTVGEVK-AVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVI 135
V+GV P + +++ + + QR + ++ALPGG GTL EL V+
Sbjct: 59 VVGVTAPAFFPERRGPNPFVDLELPAATLPQRIGRLLDLGAGYLALPGGVGTLAEL--VL 116
Query: 136 TWAQLGIHDKPVGLLNVDGYYNSLLS 161
W L + L VD Y+ LL
Sbjct: 117 AWNLLYLRRGVGRPLAVDPYWLGLLK 142
>pdb|2PMB|A Chain A, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|2PMB|B Chain B, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|2PMB|C Chain C, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|2PMB|D Chain D, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|3GH1|A Chain A, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
pdb|3GH1|B Chain B, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
pdb|3GH1|C Chain C, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
pdb|3GH1|D Chain D, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
Length = 462
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 16/104 (15%)
Query: 78 LGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITW 137
LG+ +++ E V E+ + +R R A I PGG GT EELL +
Sbjct: 211 LGLTEPSIIAAEPPNPIVNELVIXPDIEKRLEAFVRXAHGIIIFPGGPGTAEELLYI--- 267
Query: 138 AQLGIHDKP-----------VGLLNVDGYYNSLLSFIDKAVDEG 170
LGI P G + Y+ SL FI + E
Sbjct: 268 --LGIXXHPENADQPXPIVLTGPKQSEAYFRSLDKFITDTLGEA 309
>pdb|3BQ9|A Chain A, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Idiomarina Baltica Os145
pdb|3BQ9|B Chain B, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Idiomarina Baltica Os145
Length = 460
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 69/166 (41%), Gaps = 26/166 (15%)
Query: 63 MGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALP 122
+G Q V +GGR+ LG+ ++ E V E+ + + +R R A + P
Sbjct: 196 IGHAKQRV-EGGRY-LGLTEPGIIAAEPPNPIVNELVILPDIEKRLEAFVRCAHGIVIFP 253
Query: 123 GGYGTLEELLEVITWAQLGIHDKP-----------VGLLNVDGYYNSLLSFIDKAVDEGF 171
GG GT EELL + LGI P G + Y+ +L FI + G
Sbjct: 254 GGAGTAEELLYL-----LGILMHPDNQRQSLPVILTGPASSRDYFEALDEFIGATI--GD 306
Query: 172 IAPAARYIIVS-----AQTAHELICKLEEYVPKHSGVASNLSWEME 212
A II+ AQ H + +++Y + SG A +W ++
Sbjct: 307 EARQLYKIIIDDPAAVAQHMHAGMAAVKQYR-RDSGDAYYFNWTLK 351
>pdb|3P9X|A Chain A, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Bacillus Halodurans
pdb|3P9X|B Chain B, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Bacillus Halodurans
Length = 211
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 25 CGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKT 84
C P PS + I++ +QL E+ ID V G + L+G Y+G ++ + P +
Sbjct: 56 CALDPKTYPSKEAYEIEVVQQLKEKQIDFVVLAGYMRLVGPTLLGAYEG--RIVNIHP-S 112
Query: 85 LMP 87
L+P
Sbjct: 113 LLP 115
>pdb|3E9M|A Chain A, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
pdb|3E9M|B Chain B, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
pdb|3E9M|C Chain C, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
pdb|3E9M|D Chain D, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
Length = 330
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 10/111 (9%)
Query: 85 LMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHD 144
++PR + G V G+ R+ E A++ +A+P YG+ EEL + D
Sbjct: 16 IVPRFVAGLRESAQAEVRGIASRRLENAQKXAKELAIPVAYGSYEELCK----------D 65
Query: 145 KPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEE 195
+ + ++ + Y S A+ +G + ++A A EL +E
Sbjct: 66 ETIDIIYIPTYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQE 116
>pdb|1A7K|A Chain A, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|B Chain B, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|C Chain C, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|D Chain D, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1I32|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
Length = 360
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 138 AQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT---AHELICKLE 194
AQ D P G L VD S F DK EG I A+ +++SA A ++ +
Sbjct: 90 AQRNPADLPWGKLGVDYVIESTGLFTDKLKAEGHIKGGAKKVVISAPASGGAKTIVMGVN 149
Query: 195 --EYVPKHSGVASNLS 208
EY P V SN S
Sbjct: 150 QHEYSPASHHVVSNAS 165
>pdb|1GYP|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYQ|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
Length = 358
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 138 AQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT---AHELICKLE 194
AQ D P G L VD S F DK EG I A+ +++SA A ++ +
Sbjct: 90 AQRNPADLPWGKLGVDYVIESTGLFTDKLKAEGHIKGGAKKVVISAPASGGAKTIVMGVN 149
Query: 195 --EYVPKHSGVASNLS 208
EY P V SN S
Sbjct: 150 QHEYSPASHHVVSNAS 165
>pdb|2IZ5|A Chain A, Function And Structure Of The Molybdenum Cofactor Carrier
Protein Mcp From Chlamydomonas Reinhardtii
pdb|2IZ5|B Chain B, Function And Structure Of The Molybdenum Cofactor Carrier
Protein Mcp From Chlamydomonas Reinhardtii
pdb|2IZ5|C Chain C, Function And Structure Of The Molybdenum Cofactor Carrier
Protein Mcp From Chlamydomonas Reinhardtii
pdb|2IZ5|D Chain D, Function And Structure Of The Molybdenum Cofactor Carrier
Protein Mcp From Chlamydomonas Reinhardtii
pdb|2IZ6|A Chain A, Structure Of The Chlamydomonas Rheinhardtii Moco Carrier
Protein
pdb|2IZ6|B Chain B, Structure Of The Chlamydomonas Rheinhardtii Moco Carrier
Protein
pdb|2IZ7|A Chain A, Structure Of Moco Carrier Protein From Chlamydomonas
Reinhardtii
pdb|2IZ7|B Chain B, Structure Of Moco Carrier Protein From Chlamydomonas
Reinhardtii
Length = 176
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 7/107 (6%)
Query: 29 PGKSPSYQ---LAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTL 85
PGK+ + + + A +LGKQ+ L+ GG S+G+M + + G +GV+P
Sbjct: 21 PGKADTAENQLVMANELGKQIATHGWILLTGGRSLGVMHEAMKGAKEAGGTTIGVLPGPD 80
Query: 86 MPREITGDTVGEVKAVSGMHQRKAEM-ARQADAFIALPGGYGTLEEL 131
EI+ D V ++ V+G+ + + A ++ +A+ G GT E+
Sbjct: 81 T-SEIS-DAV-DIPIVTGLGSARDNINALSSNVLVAVGMGPGTAAEV 124
>pdb|3DMT|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
Length = 359
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 138 AQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT---AHELICKLE 194
AQ D P G L V+ S F KA EG + AR +++SA A L+ +
Sbjct: 90 AQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVN 149
Query: 195 --EYVPKHSGVASNLS 208
EY P V SN S
Sbjct: 150 HHEYNPSEHHVVSNAS 165
>pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1ML3|A Chain A, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|B Chain B, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|C Chain C, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|D Chain D, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1QXS|C Chain C, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|D Chain D, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|A Chain A, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|B Chain B, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|3DMT|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3IDS|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
Length = 359
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 138 AQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT---AHELICKLE 194
AQ D P G L V+ S F KA EG + AR +++SA A L+ +
Sbjct: 90 AQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVN 149
Query: 195 --EYVPKHSGVASNLS 208
EY P V SN S
Sbjct: 150 HHEYNPSEHHVVSNAS 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,696,413
Number of Sequences: 62578
Number of extensions: 281732
Number of successful extensions: 641
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 622
Number of HSP's gapped (non-prelim): 25
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)