Query 027323
Match_columns 225
No_of_seqs 146 out of 1186
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:13:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027323.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027323hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00730 conserved hypothetic 100.0 2E-54 4.4E-59 362.0 21.1 178 19-196 1-178 (178)
2 COG1611 Predicted Rossmann fol 100.0 2.1E-44 4.6E-49 307.5 20.8 186 13-199 9-198 (205)
3 TIGR00725 conserved hypothetic 100.0 3.1E-41 6.7E-46 277.7 18.8 157 18-193 1-158 (159)
4 PF03641 Lysine_decarbox: Poss 100.0 2E-38 4.4E-43 253.6 16.1 131 63-193 1-133 (133)
5 TIGR00732 dprA DNA protecting 99.6 1.5E-14 3.2E-19 125.0 16.4 155 19-192 45-219 (220)
6 PF02481 DNA_processg_A: DNA r 99.3 8.7E-11 1.9E-15 101.0 14.2 143 18-170 44-206 (212)
7 PRK10736 hypothetical protein; 99.2 8.8E-10 1.9E-14 102.0 16.7 158 19-195 108-285 (374)
8 COG0758 Smf Predicted Rossmann 99.0 1.5E-08 3.2E-13 93.2 15.3 159 19-196 112-289 (350)
9 PF12694 MoCo_carrier: Putativ 96.5 0.033 7.1E-07 45.4 9.6 93 53-152 1-98 (145)
10 KOG3614 Ca2+/Mg2+-permeable ca 95.2 0.4 8.7E-06 50.9 13.4 173 20-196 120-356 (1381)
11 PF05014 Nuc_deoxyrib_tr: Nucl 94.8 0.061 1.3E-06 41.2 5.0 46 102-153 49-98 (113)
12 PF06908 DUF1273: Protein of u 93.8 2.1 4.5E-05 36.0 12.5 103 18-121 1-136 (177)
13 PF13528 Glyco_trans_1_3: Glyc 92.8 3.2 7E-05 36.4 13.0 120 49-195 192-316 (318)
14 PF11071 DUF2872: Protein of u 92.6 1.5 3.2E-05 35.4 9.3 71 105-194 63-137 (141)
15 PF10686 DUF2493: Protein of u 92.2 1.5 3.2E-05 31.4 8.1 61 20-83 5-66 (71)
16 PRK10565 putative carbohydrate 91.9 0.7 1.5E-05 44.8 8.1 99 49-154 254-356 (508)
17 COG0707 MurG UDP-N-acetylgluco 90.5 15 0.00032 34.1 16.3 79 103-198 241-323 (357)
18 cd03784 GT1_Gtf_like This fami 90.1 7.7 0.00017 35.2 12.8 72 110-198 300-371 (401)
19 PRK13609 diacylglycerol glucos 89.6 11 0.00025 34.0 13.4 76 103-198 262-337 (380)
20 PLN02605 monogalactosyldiacylg 89.4 9 0.00019 35.0 12.7 72 107-198 275-346 (382)
21 TIGR03646 YtoQ_fam YtoQ family 89.4 4.1 8.9E-05 32.9 8.9 74 105-194 66-140 (144)
22 TIGR01133 murG undecaprenyldip 88.9 16 0.00034 32.2 15.7 73 110-198 246-320 (348)
23 TIGR03590 PseG pseudaminic aci 88.4 7.4 0.00016 34.4 11.0 36 106-152 233-268 (279)
24 PRK12446 undecaprenyldiphospho 88.2 19 0.00042 32.9 13.9 74 110-197 248-323 (352)
25 PRK13660 hypothetical protein; 87.9 11 0.00025 31.8 11.3 108 41-151 34-167 (182)
26 cd03785 GT1_MurG MurG is an N- 86.7 22 0.00047 31.3 15.8 77 106-198 244-323 (350)
27 TIGR01426 MGT glycosyltransfer 86.4 14 0.0003 33.7 11.9 70 111-198 288-358 (392)
28 PRK00025 lpxB lipid-A-disaccha 86.4 6.3 0.00014 35.5 9.6 31 109-150 256-286 (380)
29 PF04101 Glyco_tran_28_C: Glyc 85.1 1.8 3.9E-05 34.7 4.9 54 109-172 67-121 (167)
30 PRK05749 3-deoxy-D-manno-octul 84.6 33 0.00071 31.6 16.6 82 97-198 303-387 (425)
31 COG3660 Predicted nucleoside-d 83.7 34 0.00074 31.1 13.2 133 17-177 160-299 (329)
32 TIGR00215 lpxB lipid-A-disacch 82.2 36 0.00078 31.4 12.8 75 111-199 264-347 (385)
33 TIGR00661 MJ1255 conserved hyp 81.5 31 0.00067 30.7 11.8 104 50-171 189-293 (321)
34 COG1597 LCB5 Sphingosine kinas 77.2 4.9 0.00011 36.3 5.2 45 38-83 46-91 (301)
35 COG3613 Nucleoside 2-deoxyribo 77.0 19 0.00041 30.2 8.2 53 105-163 59-119 (172)
36 PRK13608 diacylglycerol glucos 76.0 10 0.00022 34.9 7.2 74 104-197 263-336 (391)
37 COG2185 Sbm Methylmalonyl-CoA 75.4 8.4 0.00018 31.4 5.6 44 37-81 27-70 (143)
38 KOG3349 Predicted glycosyltran 73.0 43 0.00093 27.9 9.2 122 18-172 3-129 (170)
39 COG0063 Predicted sugar kinase 70.0 42 0.00091 30.3 9.4 102 48-154 31-138 (284)
40 PRK00726 murG undecaprenyldiph 69.6 35 0.00076 30.3 8.9 81 102-198 240-323 (357)
41 TIGR00196 yjeF_cterm yjeF C-te 68.8 31 0.00067 30.2 8.2 44 107-154 85-128 (272)
42 PRK11914 diacylglycerol kinase 66.4 79 0.0017 28.0 10.4 17 119-135 68-84 (306)
43 PF06258 Mito_fiss_Elm1: Mitoc 66.3 1E+02 0.0022 28.0 17.3 77 111-196 225-308 (311)
44 COG1819 Glycosyl transferases, 66.3 41 0.00089 31.6 8.9 91 46-152 234-328 (406)
45 COG1832 Predicted CoA-binding 66.0 11 0.00025 30.5 4.4 35 17-56 15-49 (140)
46 COG1064 AdhP Zn-dependent alco 65.9 17 0.00036 33.7 6.0 142 49-196 167-327 (339)
47 PRK13337 putative lipid kinase 65.0 17 0.00037 32.4 5.9 43 40-83 47-91 (304)
48 COG1057 NadD Nicotinic acid mo 64.9 9.4 0.0002 32.6 3.9 34 17-50 1-34 (197)
49 PF13607 Succ_CoA_lig: Succiny 64.8 32 0.0007 27.5 6.8 85 51-153 4-90 (138)
50 PRK08105 flavodoxin; Provision 64.7 8.8 0.00019 30.9 3.6 34 18-54 1-34 (149)
51 KOG2968 Predicted esterase of 63.6 4.8 0.0001 41.8 2.2 45 41-87 830-885 (1158)
52 KOG4022 Dihydropteridine reduc 63.4 44 0.00095 28.5 7.5 70 49-125 3-83 (236)
53 PRK13055 putative lipid kinase 62.4 19 0.0004 32.8 5.7 43 40-83 49-93 (334)
54 PRK09004 FMN-binding protein M 61.6 10 0.00023 30.3 3.5 34 18-54 1-34 (146)
55 cd00411 Asparaginase Asparagin 61.6 22 0.00048 32.4 6.0 49 114-165 78-131 (323)
56 TIGR00519 asnASE_I L-asparagin 60.1 23 0.00049 32.6 5.8 50 113-165 76-130 (336)
57 PF00781 DAGK_cat: Diacylglyce 59.8 16 0.00035 28.2 4.2 42 41-83 44-90 (130)
58 smart00046 DAGKc Diacylglycero 58.3 13 0.00027 28.8 3.3 31 118-150 52-84 (124)
59 cd03786 GT1_UDP-GlcNAc_2-Epime 56.8 1.4E+02 0.003 26.3 15.5 69 106-199 269-337 (363)
60 cd07025 Peptidase_S66 LD-Carbo 55.7 82 0.0018 27.9 8.6 42 105-147 48-94 (282)
61 PRK14569 D-alanyl-alanine synt 54.1 32 0.0007 30.5 5.7 38 18-55 3-40 (296)
62 PRK02155 ppnK NAD(+)/NADH kina 53.6 78 0.0017 28.4 8.1 62 15-80 2-93 (291)
63 PF00861 Ribosomal_L18p: Ribos 53.5 49 0.0011 25.8 6.0 41 36-76 70-118 (119)
64 KOG3974 Predicted sugar kinase 53.2 90 0.002 28.3 8.1 49 106-157 93-144 (306)
65 PRK11914 diacylglycerol kinase 52.9 30 0.00066 30.7 5.3 44 38-83 52-96 (306)
66 COG1063 Tdh Threonine dehydrog 52.4 44 0.00095 30.5 6.4 29 50-80 170-198 (350)
67 PRK05723 flavodoxin; Provision 51.9 18 0.0004 29.2 3.4 33 19-54 1-33 (151)
68 PRK06029 3-octaprenyl-4-hydrox 51.2 28 0.0006 29.4 4.5 81 114-195 78-168 (185)
69 COG4671 Predicted glycosyl tra 50.8 2.3E+02 0.0049 26.9 12.4 81 103-198 283-364 (400)
70 PF01820 Dala_Dala_lig_N: D-al 50.5 17 0.00037 28.0 2.9 36 19-54 1-36 (117)
71 PRK02645 ppnK inorganic polyph 50.4 28 0.00062 31.4 4.8 106 17-170 2-116 (305)
72 PRK00861 putative lipid kinase 50.1 31 0.00068 30.5 4.9 42 40-83 47-89 (300)
73 TIGR03702 lip_kinase_YegS lipi 50.0 35 0.00076 30.2 5.2 43 40-83 42-88 (293)
74 COG3573 Predicted oxidoreducta 49.8 42 0.0009 31.8 5.7 83 51-141 141-244 (552)
75 COG0716 FldA Flavodoxins [Ener 48.9 25 0.00054 28.0 3.8 33 18-53 1-33 (151)
76 PRK03378 ppnK inorganic polyph 48.8 94 0.002 28.0 7.8 62 15-80 2-93 (292)
77 COG0300 DltE Short-chain dehyd 48.2 1.9E+02 0.0041 25.9 9.5 59 17-83 5-63 (265)
78 COG0163 UbiX 3-polyprenyl-4-hy 47.7 39 0.00084 28.9 4.8 81 115-195 81-170 (191)
79 TIGR02153 gatD_arch glutamyl-t 47.3 47 0.001 31.5 5.9 49 115-165 140-193 (404)
80 cd03820 GT1_amsD_like This fam 47.2 1.3E+02 0.0028 25.1 8.2 73 106-198 244-318 (348)
81 cd03795 GT1_like_4 This family 47.1 1.1E+02 0.0023 26.4 7.8 73 106-198 255-331 (357)
82 PRK01231 ppnK inorganic polyph 46.8 1.1E+02 0.0024 27.6 7.9 32 16-50 2-33 (295)
83 PRK00696 sucC succinyl-CoA syn 46.8 2.4E+02 0.0052 26.1 13.7 72 115-196 311-384 (388)
84 cd01171 YXKO-related B.subtili 46.6 79 0.0017 27.0 6.8 41 111-155 74-114 (254)
85 PRK04539 ppnK inorganic polyph 46.6 94 0.002 28.1 7.5 60 16-80 3-98 (296)
86 cd03808 GT1_cap1E_like This fa 46.4 72 0.0016 26.8 6.5 71 108-197 257-327 (359)
87 TIGR00640 acid_CoA_mut_C methy 46.3 77 0.0017 25.0 6.1 42 38-80 18-59 (132)
88 cd00587 HCP_like The HCP famil 46.3 47 0.001 29.7 5.3 44 13-58 89-132 (258)
89 PRK13054 lipid kinase; Reviewe 46.1 45 0.00097 29.6 5.3 43 40-83 46-92 (300)
90 COG0593 DnaA ATPase involved i 45.9 73 0.0016 30.3 6.9 104 37-150 96-214 (408)
91 cd06259 YdcF-like YdcF-like. Y 45.6 1.1E+02 0.0024 23.8 7.0 17 178-194 96-112 (150)
92 PRK12361 hypothetical protein; 45.0 44 0.00096 32.4 5.5 43 39-83 286-329 (547)
93 PLN02958 diacylglycerol kinase 44.9 46 0.00099 32.1 5.5 44 39-83 157-207 (481)
94 PRK04183 glutamyl-tRNA(Gln) am 44.5 58 0.0012 31.1 6.0 48 115-165 153-205 (419)
95 TIGR03451 mycoS_dep_FDH mycoth 44.4 2.1E+02 0.0045 25.6 9.5 32 49-82 177-209 (358)
96 PRK13059 putative lipid kinase 44.1 57 0.0012 29.0 5.6 32 115-150 57-88 (295)
97 PRK06756 flavodoxin; Provision 44.0 38 0.00082 26.6 4.1 33 18-53 1-33 (148)
98 cd03804 GT1_wbaZ_like This fam 43.8 1.2E+02 0.0027 26.5 7.8 74 105-199 252-326 (351)
99 cd03825 GT1_wcfI_like This fam 43.8 1.2E+02 0.0026 26.2 7.6 71 107-198 257-329 (365)
100 PTZ00075 Adenosylhomocysteinas 42.4 79 0.0017 30.7 6.6 86 53-156 258-344 (476)
101 PRK09880 L-idonate 5-dehydroge 42.2 1.6E+02 0.0034 26.2 8.3 30 50-81 171-201 (343)
102 PRK08887 nicotinic acid mononu 42.2 33 0.00071 28.3 3.6 24 18-41 1-24 (174)
103 TIGR00936 ahcY adenosylhomocys 42.2 65 0.0014 30.5 6.0 70 51-130 197-266 (406)
104 TIGR00421 ubiX_pad polyprenyl 42.1 53 0.0011 27.5 4.8 82 114-196 75-166 (181)
105 PRK09461 ansA cytoplasmic aspa 41.9 70 0.0015 29.3 6.0 52 113-166 80-136 (335)
106 PLN02275 transferase, transfer 41.9 2E+02 0.0043 26.0 9.0 71 105-196 297-370 (371)
107 TIGR01007 eps_fam capsular exo 41.7 68 0.0015 26.4 5.5 39 13-54 12-50 (204)
108 PRK05333 NAD-dependent deacety 41.7 72 0.0016 28.4 5.9 75 105-201 205-281 (285)
109 PTZ00032 60S ribosomal protein 41.6 49 0.0011 28.6 4.5 40 36-75 162-209 (211)
110 PRK14572 D-alanyl-alanine synt 41.5 51 0.0011 30.0 5.0 39 18-56 1-39 (347)
111 PRK03372 ppnK inorganic polyph 41.3 1.5E+02 0.0033 26.9 8.0 34 15-51 2-35 (306)
112 cd04180 UGPase_euk_like Eukary 41.0 81 0.0018 27.9 6.1 69 117-197 2-76 (266)
113 COG0252 AnsB L-asparaginase/ar 40.8 46 0.001 31.0 4.6 34 116-152 102-135 (351)
114 cd07227 Pat_Fungal_NTE1 Fungal 40.4 21 0.00046 31.8 2.3 29 42-72 2-30 (269)
115 TIGR03575 selen_PSTK_euk L-ser 40.3 1.1E+02 0.0025 28.2 7.1 49 144-195 125-174 (340)
116 COG0549 ArcC Carbamate kinase 40.2 76 0.0017 29.0 5.7 29 96-124 207-235 (312)
117 PF05159 Capsule_synth: Capsul 39.9 25 0.00055 30.5 2.7 38 109-158 194-231 (269)
118 cd07225 Pat_PNPLA6_PNPLA7 Pata 39.9 29 0.00063 31.4 3.1 31 40-72 5-35 (306)
119 PF13692 Glyco_trans_1_4: Glyc 39.9 1.4E+02 0.003 22.1 6.6 70 107-197 63-133 (135)
120 COG0794 GutQ Predicted sugar p 39.6 2.5E+02 0.0054 24.2 10.9 89 41-151 30-120 (202)
121 PF13614 AAA_31: AAA domain; P 39.5 65 0.0014 24.9 4.8 33 19-54 1-33 (157)
122 COG3967 DltE Short-chain dehyd 39.4 34 0.00074 30.1 3.3 27 52-79 8-34 (245)
123 PF02608 Bmp: Basic membrane p 39.1 49 0.0011 29.5 4.4 59 17-81 160-220 (306)
124 PF00781 DAGK_cat: Diacylglyce 38.9 36 0.00078 26.1 3.1 25 111-135 48-74 (130)
125 cd04951 GT1_WbdM_like This fam 38.6 1.2E+02 0.0026 26.1 6.7 66 109-197 257-324 (360)
126 PF04412 DUF521: Protein of un 38.6 3.5E+02 0.0076 25.7 13.8 151 15-170 178-348 (400)
127 PRK13057 putative lipid kinase 38.5 68 0.0015 28.2 5.2 42 39-83 40-82 (287)
128 PRK09922 UDP-D-galactose:(gluc 38.4 1.8E+02 0.0039 25.9 8.1 74 105-199 248-324 (359)
129 cd03818 GT1_ExpC_like This fam 38.3 1.4E+02 0.0029 27.1 7.3 72 106-198 292-365 (396)
130 TIGR03449 mycothiol_MshA UDP-N 38.2 1.1E+02 0.0025 27.4 6.8 71 106-197 294-366 (405)
131 PRK06443 chorismate mutase; Va 38.2 55 0.0012 27.7 4.2 42 34-79 91-132 (177)
132 PRK06703 flavodoxin; Provision 38.1 85 0.0018 24.6 5.3 14 66-79 105-118 (151)
133 PRK06973 nicotinic acid mononu 38.0 34 0.00074 30.0 3.2 32 17-48 20-51 (243)
134 TIGR03702 lip_kinase_YegS lipi 37.9 2E+02 0.0044 25.3 8.2 32 118-151 55-87 (293)
135 CHL00139 rpl18 ribosomal prote 37.7 76 0.0016 24.6 4.7 39 37-75 61-107 (109)
136 PRK13057 putative lipid kinase 37.5 79 0.0017 27.8 5.5 32 114-151 50-81 (287)
137 PF00106 adh_short: short chai 37.3 44 0.00095 25.9 3.5 29 52-81 3-31 (167)
138 PF09314 DUF1972: Domain of un 37.1 60 0.0013 27.4 4.4 37 18-54 1-38 (185)
139 PF12831 FAD_oxidored: FAD dep 36.8 36 0.00079 31.9 3.4 29 52-82 2-30 (428)
140 TIGR00147 lipid kinase, YegS/R 36.7 93 0.002 27.2 5.8 37 46-83 53-91 (293)
141 cd06353 PBP1_BmpA_Med_like Per 36.5 94 0.002 26.9 5.7 42 37-81 166-207 (258)
142 smart00046 DAGKc Diacylglycero 36.4 75 0.0016 24.4 4.6 31 52-83 52-86 (124)
143 PRK05593 rplR 50S ribosomal pr 36.3 83 0.0018 24.6 4.8 39 37-75 69-115 (117)
144 cd03801 GT1_YqgM_like This fam 36.3 1.1E+02 0.0023 25.6 5.9 69 108-197 269-339 (374)
145 PRK15484 lipopolysaccharide 1, 36.2 1.9E+02 0.0041 26.3 7.9 72 106-198 268-343 (380)
146 COG2081 Predicted flavoprotein 36.2 30 0.00064 32.9 2.6 27 52-80 6-32 (408)
147 TIGR03088 stp2 sugar transfera 36.1 1.2E+02 0.0026 26.8 6.5 69 109-198 267-337 (374)
148 PF00534 Glycos_transf_1: Glyc 35.9 1.8E+02 0.0038 22.5 6.8 72 105-197 83-156 (172)
149 PRK06703 flavodoxin; Provision 35.7 48 0.001 26.1 3.5 33 18-53 1-33 (151)
150 PRK13337 putative lipid kinase 35.7 1.7E+02 0.0037 25.9 7.4 30 118-150 60-89 (304)
151 PRK05476 S-adenosyl-L-homocyst 35.5 1E+02 0.0022 29.4 6.2 87 52-157 215-302 (425)
152 PF09152 DUF1937: Domain of un 35.4 40 0.00086 26.6 2.8 39 106-150 71-114 (116)
153 PRK14077 pnk inorganic polypho 35.4 1.6E+02 0.0034 26.5 7.1 58 17-80 9-94 (287)
154 cd03799 GT1_amsK_like This is 35.2 1.6E+02 0.0035 25.3 7.0 73 106-197 247-325 (355)
155 TIGR03282 methan_mark_13 putat 35.2 1.3E+02 0.0029 28.1 6.6 33 50-83 52-84 (352)
156 TIGR00060 L18_bact ribosomal p 35.1 86 0.0019 24.5 4.7 40 36-75 65-112 (114)
157 TIGR03201 dearomat_had 6-hydro 35.0 2.2E+02 0.0049 25.3 8.1 30 50-81 168-197 (349)
158 PRK07313 phosphopantothenoylcy 35.0 65 0.0014 26.9 4.3 89 111-199 74-180 (182)
159 PF14359 DUF4406: Domain of un 34.8 83 0.0018 23.4 4.4 32 105-136 50-84 (92)
160 PF00710 Asparaginase: Asparag 34.8 96 0.0021 28.0 5.7 37 113-151 71-107 (313)
161 CHL00200 trpA tryptophan synth 34.8 1.9E+02 0.0042 25.6 7.5 60 127-196 75-143 (263)
162 PRK14568 vanB D-alanine--D-lac 34.6 65 0.0014 29.2 4.6 36 19-54 4-39 (343)
163 PRK13054 lipid kinase; Reviewe 34.5 2.4E+02 0.0052 24.9 8.1 34 115-150 57-90 (300)
164 PRK02649 ppnK inorganic polyph 34.4 2E+02 0.0043 26.2 7.6 32 18-52 1-32 (305)
165 cd03822 GT1_ecORF704_like This 34.4 1.8E+02 0.004 24.7 7.3 70 106-198 259-333 (366)
166 PRK01966 ddl D-alanyl-alanine 34.4 68 0.0015 29.0 4.6 36 19-54 4-39 (333)
167 PLN02494 adenosylhomocysteinas 34.2 1.3E+02 0.0029 29.2 6.8 90 50-158 255-345 (477)
168 PRK01372 ddl D-alanine--D-alan 34.2 65 0.0014 28.2 4.4 37 20-56 6-42 (304)
169 COG0703 AroK Shikimate kinase 34.1 99 0.0021 25.9 5.2 81 43-125 66-155 (172)
170 PRK08862 short chain dehydroge 34.0 2.2E+02 0.0048 23.9 7.5 54 19-80 6-59 (227)
171 PRK12359 flavodoxin FldB; Prov 33.9 1E+02 0.0022 25.5 5.3 20 35-54 97-116 (172)
172 TIGR01182 eda Entner-Doudoroff 33.8 1.5E+02 0.0033 25.3 6.4 108 18-136 8-119 (204)
173 PRK09271 flavodoxin; Provision 33.7 55 0.0012 26.3 3.6 31 20-53 2-32 (160)
174 cd03816 GT1_ALG1_like This fam 33.7 3E+02 0.0064 25.4 8.9 72 106-198 306-380 (415)
175 KOG1201 Hydroxysteroid 17-beta 33.4 48 0.001 30.3 3.4 29 48-77 37-65 (300)
176 TIGR00642 mmCoA_mut_beta methy 33.1 72 0.0016 32.0 4.9 43 19-65 547-589 (619)
177 PRK00942 acetylglutamate kinas 32.8 88 0.0019 27.6 5.0 47 12-59 17-66 (283)
178 PF09848 DUF2075: Uncharacteri 32.8 3.8E+02 0.0082 24.3 15.3 98 110-210 113-231 (352)
179 PRK02645 ppnK inorganic polyph 32.6 2.5E+02 0.0054 25.3 8.0 29 50-80 59-87 (305)
180 PRK14571 D-alanyl-alanine synt 32.6 88 0.0019 27.5 5.0 35 20-54 2-36 (299)
181 PF01182 Glucosamine_iso: Gluc 32.4 2.4E+02 0.0052 23.5 7.4 85 112-197 18-111 (199)
182 PF04007 DUF354: Protein of un 32.3 2.1E+02 0.0046 26.3 7.6 64 111-197 245-308 (335)
183 cd05844 GT1_like_7 Glycosyltra 32.3 2.6E+02 0.0056 24.3 7.9 69 108-198 258-335 (367)
184 cd01408 SIRT1 SIRT1: Eukaryoti 32.0 1.3E+02 0.0027 26.1 5.8 70 105-193 166-235 (235)
185 PF03358 FMN_red: NADPH-depend 32.0 97 0.0021 24.0 4.7 48 106-153 62-115 (152)
186 cd02072 Glm_B12_BD B12 binding 31.9 2.6E+02 0.0056 22.2 10.0 40 40-80 17-56 (128)
187 PF13380 CoA_binding_2: CoA bi 31.9 93 0.002 23.8 4.4 31 19-54 1-31 (116)
188 PRK13937 phosphoheptose isomer 31.8 1.1E+02 0.0023 25.4 5.1 30 33-62 22-51 (188)
189 PRK06015 keto-hydroxyglutarate 31.7 2.1E+02 0.0046 24.4 7.0 108 18-136 4-115 (201)
190 PF01256 Carb_kinase: Carbohyd 31.4 3.3E+02 0.0073 23.6 8.3 125 53-195 2-133 (242)
191 KOG2585 Uncharacterized conser 31.0 85 0.0018 30.2 4.7 46 20-70 268-317 (453)
192 TIGR01205 D_ala_D_alaTIGR D-al 30.9 65 0.0014 28.3 3.8 38 20-57 1-38 (315)
193 PRK05568 flavodoxin; Provision 30.8 88 0.0019 24.1 4.2 31 19-52 2-32 (142)
194 PRK14138 NAD-dependent deacety 30.7 1.2E+02 0.0027 26.3 5.5 71 105-197 169-241 (244)
195 PRK06635 aspartate kinase; Rev 30.6 1.5E+02 0.0032 27.5 6.3 35 23-58 7-43 (404)
196 TIGR01501 MthylAspMutase methy 30.3 1.5E+02 0.0033 23.7 5.5 40 40-80 19-58 (134)
197 COG1010 CobJ Precorrin-3B meth 30.1 4E+02 0.0086 23.7 12.2 113 37-153 60-196 (249)
198 cd04193 UDPGlcNAc_PPase UDPGlc 30.0 3.3E+02 0.0071 24.9 8.3 78 107-195 6-93 (323)
199 cd03814 GT1_like_2 This family 29.9 1.5E+02 0.0033 25.2 6.0 69 108-197 260-330 (364)
200 PF01985 CRS1_YhbY: CRS1 / Yhb 29.9 84 0.0018 22.8 3.7 54 141-196 13-67 (84)
201 cd00432 Ribosomal_L18_L5e Ribo 29.9 1.1E+02 0.0024 22.9 4.4 38 37-74 57-102 (103)
202 KOG4175 Tryptophan synthase al 29.8 2E+02 0.0042 25.3 6.3 69 127-204 78-151 (268)
203 KOG2683 Sirtuin 4 and related 29.8 61 0.0013 29.0 3.3 42 110-154 242-283 (305)
204 PRK04885 ppnK inorganic polyph 29.7 3E+02 0.0065 24.4 7.8 55 20-80 2-67 (265)
205 PLN02586 probable cinnamyl alc 29.7 1.4E+02 0.003 27.0 5.9 83 50-135 185-268 (360)
206 cd00952 CHBPH_aldolase Trans-o 29.7 2.8E+02 0.0061 24.9 7.8 70 16-86 41-115 (309)
207 cd03819 GT1_WavL_like This fam 29.6 1.4E+02 0.003 25.8 5.7 69 108-197 257-328 (355)
208 PRK08264 short chain dehydroge 29.4 3E+02 0.0065 22.5 7.5 30 50-80 7-37 (238)
209 COG0112 GlyA Glycine/serine hy 29.3 62 0.0014 30.8 3.5 40 37-76 291-340 (413)
210 cd03800 GT1_Sucrose_synthase T 29.2 1.4E+02 0.0029 26.3 5.6 70 108-198 296-367 (398)
211 COG0159 TrpA Tryptophan syntha 29.1 2.7E+02 0.0058 25.0 7.4 63 127-195 77-141 (265)
212 PRK13059 putative lipid kinase 28.9 1.2E+02 0.0027 26.8 5.3 39 44-83 50-90 (295)
213 PF04230 PS_pyruv_trans: Polys 28.9 78 0.0017 26.0 3.8 88 113-209 62-159 (286)
214 KOG2467 Glycine/serine hydroxy 28.9 66 0.0014 30.6 3.6 36 38-73 329-374 (477)
215 TIGR02690 resist_ArsH arsenica 28.8 1.2E+02 0.0026 26.3 5.0 49 106-154 82-138 (219)
216 PRK09355 hydroxyethylthiazole 28.8 2.7E+02 0.0058 24.3 7.3 41 111-155 51-94 (263)
217 TIGR01127 ilvA_1Cterm threonin 28.7 2.4E+02 0.0053 25.8 7.4 21 116-136 307-327 (380)
218 PRK00208 thiG thiazole synthas 28.7 4.2E+02 0.0092 23.6 13.9 108 12-136 87-195 (250)
219 cd03807 GT1_WbnK_like This fam 28.7 1.4E+02 0.0031 25.1 5.5 66 110-198 264-331 (365)
220 PLN02271 serine hydroxymethylt 28.7 58 0.0013 32.5 3.3 40 37-76 442-491 (586)
221 PRK06756 flavodoxin; Provision 28.7 1.4E+02 0.003 23.3 5.1 14 66-79 106-119 (148)
222 PRK02649 ppnK inorganic polyph 28.6 1.2E+02 0.0027 27.5 5.3 53 113-171 67-126 (305)
223 cd04728 ThiG Thiazole synthase 28.5 4.3E+02 0.0092 23.5 13.8 107 13-136 88-195 (248)
224 PRK12422 chromosomal replicati 28.4 1.7E+02 0.0036 28.0 6.3 105 38-151 121-242 (445)
225 TIGR01753 flav_short flavodoxi 28.3 1.4E+02 0.003 22.6 4.9 8 72-79 108-115 (140)
226 PRK09536 btuD corrinoid ABC tr 28.3 1.2E+02 0.0026 28.6 5.3 71 63-133 279-357 (402)
227 cd04949 GT1_gtfA_like This fam 28.2 1.9E+02 0.0042 25.5 6.5 69 111-199 275-345 (372)
228 PF12146 Hydrolase_4: Putative 28.2 90 0.002 22.2 3.6 16 40-55 33-48 (79)
229 PF11834 DUF3354: Domain of un 28.1 1.3E+02 0.0028 21.4 4.2 33 116-154 19-51 (69)
230 PRK15494 era GTPase Era; Provi 27.8 4.7E+02 0.01 23.8 9.9 89 112-204 129-222 (339)
231 PRK15427 colanic acid biosynth 27.7 2.7E+02 0.0058 25.7 7.5 69 109-198 293-369 (406)
232 PLN02945 nicotinamide-nucleoti 27.7 1.4E+02 0.0031 25.7 5.4 39 16-54 19-57 (236)
233 KOG0503 Asparaginase [Amino ac 27.6 92 0.002 29.2 4.3 37 113-152 120-156 (368)
234 PF04016 DUF364: Domain of unk 27.4 86 0.0019 25.2 3.7 75 105-195 53-130 (147)
235 PHA03392 egt ecdysteroid UDP-g 27.1 5.8E+02 0.013 24.7 12.1 113 41-171 286-408 (507)
236 COG2085 Predicted dinucleotide 26.8 1.4E+02 0.0031 25.8 5.1 52 18-80 1-52 (211)
237 PF01113 DapB_N: Dihydrodipico 26.7 2.9E+02 0.0063 21.1 8.0 50 112-168 65-114 (124)
238 PRK03708 ppnK inorganic polyph 26.6 1.3E+02 0.0029 26.7 5.1 35 19-56 1-35 (277)
239 PRK00861 putative lipid kinase 26.5 1.5E+02 0.0032 26.2 5.4 30 115-150 58-87 (300)
240 KOG1584 Sulfotransferase [Gene 26.4 1.4E+02 0.0031 27.2 5.2 58 123-197 152-213 (297)
241 PRK03600 nrdI ribonucleotide r 26.4 1.1E+02 0.0023 24.4 4.0 43 4-46 57-101 (134)
242 TIGR01754 flav_RNR ribonucleot 26.3 87 0.0019 24.4 3.4 41 114-156 50-94 (140)
243 PRK07677 short chain dehydroge 26.1 98 0.0021 25.9 4.0 30 20-57 3-32 (252)
244 cd03798 GT1_wlbH_like This fam 26.0 2.1E+02 0.0046 24.0 6.1 73 106-199 270-344 (377)
245 cd02201 FtsZ_type1 FtsZ is a G 26.0 4.4E+02 0.0095 23.6 8.4 71 44-122 80-154 (304)
246 KOG0832 Mitochondrial/chloropl 26.0 2.1E+02 0.0045 25.4 5.9 45 33-78 91-136 (251)
247 PRK13146 hisH imidazole glycer 25.9 1.7E+02 0.0037 24.7 5.4 17 64-80 67-83 (209)
248 cd05009 SIS_GlmS_GlmD_2 SIS (S 25.8 3E+02 0.0065 20.9 7.4 91 39-152 3-97 (153)
249 PLN02740 Alcohol dehydrogenase 25.7 1.4E+02 0.0031 27.1 5.3 84 49-135 199-289 (381)
250 TIGR00147 lipid kinase, YegS/R 25.5 2.1E+02 0.0046 24.9 6.2 33 115-152 58-91 (293)
251 PRK06849 hypothetical protein; 25.5 4.1E+02 0.0088 24.3 8.2 34 17-58 3-36 (389)
252 PRK03170 dihydrodipicolinate s 25.5 4.6E+02 0.01 23.0 10.4 74 12-86 30-108 (292)
253 cd00401 AdoHcyase S-adenosyl-L 25.5 1.6E+02 0.0035 28.0 5.6 69 51-130 204-273 (413)
254 PLN02871 UDP-sulfoquinovose:DA 25.3 2.6E+02 0.0056 26.1 7.1 74 106-197 323-398 (465)
255 cd03823 GT1_ExpE7_like This fa 25.3 2.8E+02 0.006 23.4 6.7 72 106-198 254-328 (359)
256 PRK00625 shikimate kinase; Pro 25.2 2.2E+02 0.0048 23.3 5.8 77 41-120 65-148 (173)
257 PF04127 DFP: DNA / pantothena 25.2 2.4E+02 0.0052 23.6 6.1 64 53-121 22-89 (185)
258 PF03492 Methyltransf_7: SAM d 25.2 83 0.0018 28.8 3.6 43 154-196 198-243 (334)
259 TIGR03371 cellulose_yhjQ cellu 25.2 1.5E+02 0.0032 24.8 4.9 34 18-54 1-34 (246)
260 PRK14077 pnk inorganic polypho 25.1 1.7E+02 0.0037 26.3 5.5 51 114-170 64-121 (287)
261 PLN02591 tryptophan synthase 24.9 3.8E+02 0.0082 23.6 7.5 40 127-171 62-107 (250)
262 PRK00071 nadD nicotinic acid m 24.8 1.1E+02 0.0024 25.5 4.0 26 18-43 3-28 (203)
263 cd00114 LIGANc NAD+ dependent 24.7 1.2E+02 0.0026 27.6 4.5 61 158-221 228-296 (307)
264 PRK11840 bifunctional sulfur c 24.7 5.6E+02 0.012 23.7 13.5 107 13-137 162-270 (326)
265 PRK07102 short chain dehydroge 24.6 1E+02 0.0022 25.6 3.8 32 18-57 1-32 (243)
266 PRK08210 aspartate kinase I; R 24.5 1.3E+02 0.0028 27.9 4.8 39 20-59 3-45 (403)
267 cd03812 GT1_CapH_like This fam 24.4 3E+02 0.0066 23.6 6.9 70 108-199 260-331 (358)
268 PF07442 Ponericin: Ponericin; 24.4 1.6E+02 0.0034 17.4 3.3 25 37-70 4-28 (29)
269 PRK14557 pyrH uridylate kinase 24.3 1.1E+02 0.0024 26.8 4.1 43 17-59 3-54 (247)
270 cd06424 UGGPase UGGPase cataly 24.3 1.8E+02 0.0038 26.7 5.5 39 117-167 2-45 (315)
271 PRK05854 short chain dehydroge 24.3 1.1E+02 0.0024 27.0 4.1 21 39-59 27-47 (313)
272 TIGR02822 adh_fam_2 zinc-bindi 24.3 67 0.0014 28.6 2.7 31 50-82 167-197 (329)
273 PRK14075 pnk inorganic polypho 24.2 2.9E+02 0.0064 24.2 6.8 53 19-81 1-69 (256)
274 PRK09267 flavodoxin FldA; Vali 23.8 84 0.0018 25.2 3.0 27 18-47 1-27 (169)
275 PRK10494 hypothetical protein; 23.8 3.3E+02 0.0071 23.9 7.0 15 180-194 181-195 (259)
276 PRK06180 short chain dehydroge 23.7 1.1E+02 0.0023 26.3 3.9 33 18-58 4-36 (277)
277 TIGR01832 kduD 2-deoxy-D-gluco 23.7 1.1E+02 0.0024 25.3 3.9 31 19-57 6-36 (248)
278 PF02729 OTCace_N: Aspartate/o 23.6 3.8E+02 0.0082 21.3 8.7 79 67-165 58-136 (142)
279 PRK00358 pyrH uridylate kinase 23.5 1.1E+02 0.0025 25.9 3.9 47 107-157 112-163 (231)
280 PF14947 HTH_45: Winged helix- 23.5 99 0.0021 21.9 3.0 40 156-196 33-72 (77)
281 COG2515 Acd 1-aminocyclopropan 23.5 2.3E+02 0.005 26.1 6.0 39 113-154 179-217 (323)
282 PRK07308 flavodoxin; Validated 23.5 1.1E+02 0.0023 24.0 3.5 41 113-153 47-91 (146)
283 PF03853 YjeF_N: YjeF-related 23.2 2E+02 0.0043 23.4 5.1 58 16-78 23-85 (169)
284 cd04254 AAK_UMPK-PyrH-Ec UMP k 23.2 1.2E+02 0.0026 25.9 4.0 48 106-157 111-163 (231)
285 TIGR00253 RNA_bind_YhbY putati 23.1 2.6E+02 0.0057 21.0 5.4 53 143-197 15-68 (95)
286 KOG1207 Diacetyl reductase/L-x 23.0 1E+02 0.0023 26.5 3.5 30 51-81 9-38 (245)
287 PRK07890 short chain dehydroge 23.0 4E+02 0.0086 22.0 7.2 54 19-80 6-59 (258)
288 PRK09426 methylmalonyl-CoA mut 23.0 4.2E+02 0.0091 27.1 8.3 46 35-81 595-640 (714)
289 PTZ00187 succinyl-CoA syntheta 22.9 5.5E+02 0.012 23.6 8.4 90 102-197 210-313 (317)
290 PRK13055 putative lipid kinase 22.9 2.3E+02 0.0049 25.7 5.9 31 116-150 61-91 (334)
291 COG0394 Wzb Protein-tyrosine-p 22.8 2.5E+02 0.0055 22.3 5.6 36 18-57 2-37 (139)
292 PRK07035 short chain dehydroge 22.7 1.2E+02 0.0026 25.3 3.9 31 19-57 9-39 (252)
293 PRK11780 isoprenoid biosynthes 22.7 87 0.0019 26.9 3.0 39 18-57 1-40 (217)
294 KOG1718 Dual specificity phosp 22.6 84 0.0018 26.7 2.8 52 115-167 95-156 (198)
295 KOG4321 Predicted phosphate ac 22.6 1.1E+02 0.0024 26.0 3.5 30 105-134 68-97 (279)
296 COG1597 LCB5 Sphingosine kinas 22.4 1.1E+02 0.0024 27.5 3.7 30 116-150 59-89 (301)
297 PRK07454 short chain dehydroge 22.4 4.4E+02 0.0095 21.6 7.3 58 15-80 3-60 (241)
298 cd04962 GT1_like_5 This family 22.3 3.5E+02 0.0076 23.5 7.0 68 109-197 265-334 (371)
299 PRK05866 short chain dehydroge 22.3 3.4E+02 0.0073 23.7 6.8 54 19-80 41-94 (293)
300 COG2984 ABC-type uncharacteriz 22.2 6.3E+02 0.014 23.4 8.8 64 14-80 155-218 (322)
301 TIGR03492 conserved hypothetic 22.2 6.3E+02 0.014 23.4 13.6 36 109-155 291-326 (396)
302 PRK11096 ansB L-asparaginase I 22.1 1.2E+02 0.0027 28.0 4.1 49 113-164 99-152 (347)
303 PRK08339 short chain dehydroge 22.0 1.4E+02 0.003 25.5 4.2 18 40-57 22-39 (263)
304 TIGR01752 flav_long flavodoxin 22.0 2.2E+02 0.0047 22.9 5.1 19 63-81 100-118 (167)
305 COG2242 CobL Precorrin-6B meth 21.9 1.2E+02 0.0025 25.9 3.6 124 39-172 24-154 (187)
306 cd03821 GT1_Bme6_like This fam 21.9 3.9E+02 0.0085 22.4 7.0 69 107-198 274-344 (375)
307 PRK05867 short chain dehydroge 21.9 4.3E+02 0.0094 21.9 7.2 54 19-80 10-63 (253)
308 PRK07109 short chain dehydroge 21.9 3.2E+02 0.0069 24.4 6.7 54 19-80 9-62 (334)
309 PF09929 DUF2161: Uncharacteri 21.9 2E+02 0.0044 22.7 4.6 17 33-49 55-71 (118)
310 cd08233 butanediol_DH_like (2R 21.8 5.5E+02 0.012 22.6 8.9 30 50-81 174-204 (351)
311 PRK08105 flavodoxin; Provision 21.7 1.9E+02 0.0041 23.1 4.7 40 39-79 68-120 (149)
312 PRK10834 vancomycin high tempe 21.7 2.9E+02 0.0063 24.3 6.1 8 118-125 84-91 (239)
313 PF12641 Flavodoxin_3: Flavodo 21.7 3E+02 0.0066 22.4 5.9 46 9-54 58-103 (160)
314 PF00290 Trp_syntA: Tryptophan 21.6 1.6E+02 0.0034 26.2 4.5 40 127-169 70-110 (259)
315 PRK13402 gamma-glutamyl kinase 21.6 1.4E+02 0.0031 27.8 4.4 42 16-58 3-53 (368)
316 PF05690 ThiG: Thiazole biosyn 21.6 66 0.0014 28.6 2.0 116 15-152 90-205 (247)
317 PRK06300 enoyl-(acyl carrier p 21.5 1.2E+02 0.0026 27.1 3.8 17 40-56 24-40 (299)
318 PRK08217 fabG 3-ketoacyl-(acyl 21.5 1.3E+02 0.0029 24.7 3.9 31 19-57 6-36 (253)
319 cd01412 SIRT5_Af1_CobB SIRT5_A 21.5 3.1E+02 0.0068 23.2 6.2 67 106-193 156-223 (224)
320 PRK07152 nadD putative nicotin 21.5 1.2E+02 0.0027 27.6 3.9 28 20-47 2-29 (342)
321 PRK14076 pnk inorganic polypho 21.5 4.6E+02 0.01 25.8 8.2 64 13-80 285-378 (569)
322 TIGR00715 precor6x_red precorr 21.3 5E+02 0.011 22.8 7.6 57 114-197 197-255 (256)
323 PF01320 Colicin_Pyocin: Colic 21.2 1.1E+02 0.0023 22.8 2.8 47 151-201 28-79 (85)
324 PF13407 Peripla_BP_4: Peripla 21.2 2.3E+02 0.0049 23.5 5.3 38 111-153 52-89 (257)
325 PRK12367 short chain dehydroge 21.1 1.4E+02 0.003 25.5 4.0 15 184-198 196-210 (245)
326 PRK09291 short chain dehydroge 21.1 1.4E+02 0.003 24.9 3.9 32 19-58 3-34 (257)
327 PRK07062 short chain dehydroge 21.1 1.3E+02 0.0029 25.3 3.9 31 19-57 9-39 (265)
328 cd02040 NifH NifH gene encodes 21.0 2E+02 0.0043 24.5 4.9 33 18-54 1-33 (270)
329 TIGR00236 wecB UDP-N-acetylglu 21.0 3.9E+02 0.0085 23.8 7.1 66 107-198 267-333 (365)
330 TIGR02075 pyrH_bact uridylate 21.0 1.3E+02 0.0027 25.9 3.7 48 106-157 112-165 (233)
331 PF00464 SHMT: Serine hydroxym 20.9 63 0.0014 30.6 1.9 43 37-79 307-359 (399)
332 PLN03050 pyridoxine (pyridoxam 20.9 1.6E+02 0.0035 25.8 4.4 30 19-53 61-90 (246)
333 PRK02261 methylaspartate mutas 20.9 4.2E+02 0.0092 20.9 7.1 40 40-80 21-60 (137)
334 PRK03708 ppnK inorganic polyph 20.9 4.8E+02 0.01 23.2 7.5 28 50-80 59-86 (277)
335 PRK00779 ornithine carbamoyltr 20.8 5.3E+02 0.012 23.2 7.9 85 67-151 62-159 (304)
336 cd04260 AAK_AKi-DapG-BS AAK_AK 20.8 1.5E+02 0.0033 25.6 4.2 25 24-48 6-30 (244)
337 PF07279 DUF1442: Protein of u 20.7 5.7E+02 0.012 22.3 7.8 72 63-141 58-139 (218)
338 PRK03620 5-dehydro-4-deoxygluc 20.7 6E+02 0.013 22.6 8.2 69 15-85 39-112 (303)
339 cd04261 AAK_AKii-LysC-BS AAK_A 20.7 2.5E+02 0.0055 24.0 5.5 34 24-58 6-41 (239)
340 TIGR02919 accessory Sec system 20.6 4.9E+02 0.011 24.8 7.9 81 98-199 330-411 (438)
341 TIGR03366 HpnZ_proposed putati 20.6 1.6E+02 0.0034 25.4 4.3 83 50-135 122-208 (280)
342 COG0206 FtsZ Cell division GTP 20.6 6.9E+02 0.015 23.2 8.8 82 32-123 75-166 (338)
343 PRK04155 chaperone protein Hch 20.6 97 0.0021 27.9 3.0 34 117-150 149-186 (287)
344 PRK08589 short chain dehydroge 20.6 1.4E+02 0.003 25.6 3.9 53 19-80 7-59 (272)
345 cd01411 SIR2H SIR2H: Uncharact 20.6 1.2E+02 0.0027 25.9 3.6 46 105-154 162-207 (225)
346 PTZ00286 6-phospho-1-fructokin 20.5 7.4E+02 0.016 24.0 9.1 33 49-81 88-126 (459)
347 PF02571 CbiJ: Precorrin-6x re 20.5 5.8E+02 0.013 22.3 11.5 63 106-195 184-249 (249)
348 COG3980 spsG Spore coat polysa 20.5 1.7E+02 0.0037 26.9 4.4 41 19-59 1-41 (318)
349 cd06320 PBP1_allose_binding Pe 20.4 1.9E+02 0.0041 24.2 4.7 32 21-54 2-33 (275)
350 COG1402 Uncharacterized protei 20.4 1.9E+02 0.0042 25.6 4.8 45 31-75 84-132 (250)
351 PRK09496 trkA potassium transp 20.3 2.1E+02 0.0046 26.5 5.3 89 35-125 217-308 (453)
352 COG0062 Uncharacterized conser 20.2 2.1E+02 0.0046 24.5 4.9 40 113-153 118-160 (203)
353 PRK07775 short chain dehydroge 20.2 5.4E+02 0.012 21.8 7.6 34 17-58 9-42 (274)
354 TIGR00520 asnASE_II L-asparagi 20.1 1.4E+02 0.003 27.7 3.9 34 115-151 106-139 (349)
No 1
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=100.00 E-value=2e-54 Score=362.02 Aligned_cols=178 Identities=47% Similarity=0.853 Sum_probs=170.6
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCcEEEEecCccccCCCCCCCCceE
Q 027323 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEV 98 (225)
Q Consensus 19 ~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~ 98 (225)
|+|||||||+.+.++.|++.|++||++||++|+.||||||..|+|+|+++||+++||+|+||+|..+..++.+++.++++
T Consensus 1 ~~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~GGg~~GlM~a~a~ga~~~gG~viGi~p~~l~~~~~~~~~~~~~ 80 (178)
T TIGR00730 1 KTVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGGGRVGLMGAIADAAMENGGTAVGVNPSGLFSGEVVHQNLTEL 80 (178)
T ss_pred CEEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCChHhHHHHHHHHHHhcCCeEEEecchhhhhhhccCCCCCce
Confidence 48999999999999999999999999999999999999996699999999999999999999999887777778888889
Q ss_pred EecCCHHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCccccc
Q 027323 99 KAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARY 178 (225)
Q Consensus 99 i~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~ 178 (225)
+++++|++||.+|++.||+||++|||+|||+|++++|+|.|+++|+||++++|.+|||+++++|+++|+++||++++..+
T Consensus 81 i~~~~~~~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~~~~ 160 (178)
T TIGR00730 81 IEVNGMHERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGFISESHLK 160 (178)
T ss_pred EEECCHHHHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCCCCHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEcCCHHHHHHHHHhh
Q 027323 179 IIVSAQTAHELICKLEEY 196 (225)
Q Consensus 179 ~i~~~~d~ee~~~~l~~~ 196 (225)
.+++++|++|++++|+++
T Consensus 161 ~~~~~d~~~e~~~~i~~~ 178 (178)
T TIGR00730 161 LIHVVSRPDELIEQVQNY 178 (178)
T ss_pred cEEEcCCHHHHHHHHHhC
Confidence 999999999999999753
No 2
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=100.00 E-value=2.1e-44 Score=307.46 Aligned_cols=186 Identities=37% Similarity=0.656 Sum_probs=169.8
Q ss_pred HhhcCcceEEEEcCCCCCCChH-HHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCcEEEEecCccccCCCC
Q 027323 13 ALKSRFKRVCVFCGSSPGKSPS-YQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREIT 91 (225)
Q Consensus 13 ~~~~~~~~I~VfggS~~~~~~~-~~~~A~~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~ 91 (225)
.....+++|||||||+...++. |++.|++||++||++|+.|+||||+ |+|+|+++||.++||.||||+|......+..
T Consensus 9 ~~~~~~~~i~V~~gs~~~~~~~~~~~~a~~lg~~la~~g~~V~tGG~~-GiMea~~~gA~~~gg~~vGi~p~~~~~~e~~ 87 (205)
T COG1611 9 LLFIGIRQIVVICGSARGIEPEEYYELARELGRELAKRGLLVITGGGP-GVMEAVARGALEAGGLVVGILPGLLHEQEPP 87 (205)
T ss_pred hcccCcceEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEeCCch-hhhhHHHHHHHHcCCeEEEecCCCchhhccC
Confidence 3445688999999999876665 9999999999999999888888876 9999999999999999999999887665544
Q ss_pred CCCCceEEecCCHHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCC--CCceEEEecCccchhHHHHHH-HHHH
Q 027323 92 GDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIH--DKPVGLLNVDGYYNSLLSFID-KAVD 168 (225)
Q Consensus 92 ~~~~~~~i~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~--~kPiill~~~g~w~~l~~~l~-~~~~ 168 (225)
+...++++++.+|++||..|+++|||||++|||+||++|++++|+|.|++.+ .+|+++++.++||+++.+|++ +++.
T Consensus 88 ~~~~~~l~~~~~~~~Rk~~~~~~ada~V~~pGG~GTleEl~e~lt~~q~g~~~l~~~~~i~~~~~~~~~~~~~~d~~~i~ 167 (205)
T COG1611 88 NYEVIELITGMDFAERKRAMVRSADAFIVLPGGFGTLEELFEALTLGQTGVHALTPPPLILNGNGFWEPLLEFLDPHLIV 167 (205)
T ss_pred ccccceeeecCCHHHHHHHHHHhCCEEEEeCCCcchHHHHHHHHHHhhCCcccCCCCcEEecchHHHHHHHHHhCHHHHH
Confidence 5556788999999999999999999999999999999999999999999988 888888999999999999998 9999
Q ss_pred cCCCCcccccceEEcCCHHHHHHHHHhhcCC
Q 027323 169 EGFIAPAARYIIVSAQTAHELICKLEEYVPK 199 (225)
Q Consensus 169 ~g~i~~~~~~~i~~~~d~ee~~~~l~~~~~~ 199 (225)
++++++...+++.+++|++++++.+.++.+.
T Consensus 168 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (205)
T COG1611 168 EGLISEADRELLIVVDDAEEAIDAILKYLPP 198 (205)
T ss_pred hhcCChhhhhheeeecCHHHHHHHHHHhccc
Confidence 9999999999999999999999999998865
No 3
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=100.00 E-value=3.1e-41 Score=277.75 Aligned_cols=157 Identities=27% Similarity=0.430 Sum_probs=134.4
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCcEEEEecCccccCCCCCCCCce
Q 027323 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGE 97 (225)
Q Consensus 18 ~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~ 97 (225)
|++|||||||+ .++.|++.|++||++||++|+.|||||+. |+|++++++|+++||+||||+|..+. ..+++.+
T Consensus 1 ~~~I~V~gss~--~~~~~~~~A~~lg~~La~~g~~lv~Gg~~-GlM~a~a~ga~~~gg~viGVlp~~l~----~~~~~~~ 73 (159)
T TIGR00725 1 MVQIGVIGSSN--KSEELYEIAYRLGKELAKKGHILINGGRT-GVMEAVSKGAREAGGLVVGILPDEDF----AGNPYLT 73 (159)
T ss_pred CeEEEEEeCCC--CChHHHHHHHHHHHHHHHCCCEEEcCCch-hHHHHHHHHHHHCCCeEEEECChhhc----cCCCCce
Confidence 57899999887 37899999999999999999999998876 99999999999999999999998653 2344445
Q ss_pred EEecCCH-HHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCccc
Q 027323 98 VKAVSGM-HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAA 176 (225)
Q Consensus 98 ~i~~~~m-~~Rk~~mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~ 176 (225)
+++..+| ++||++|+++||+||++|||+|||+|++++|+ ++|||+++|.+|||+++++++ +.+.+|++ +
T Consensus 74 ~~i~~~~~~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~------~~kpv~~l~~~g~~~~~l~~~--~~~~~~~~-~- 143 (159)
T TIGR00725 74 IKVKTGMNFARNFILVRSADVVVSVGGGYGTAIEILGAYA------LGGPVVVLRGTGGWTDRLSQV--LIEGVYLD-E- 143 (159)
T ss_pred EEEECCCcchHHHHHHHHCCEEEEcCCchhHHHHHHHHHH------cCCCEEEEECCCcchHHHHHH--Hhcccccc-c-
Confidence 5544554 89999999999999999999999999999997 589999999999999998874 44444444 2
Q ss_pred ccceEEcCCHHHHHHHH
Q 027323 177 RYIIVSAQTAHELICKL 193 (225)
Q Consensus 177 ~~~i~~~~d~ee~~~~l 193 (225)
.+.+++|++|+++.+
T Consensus 144 --~~~~~~~~~e~~~~~ 158 (159)
T TIGR00725 144 --RVIVEITPAEAVKLA 158 (159)
T ss_pred --eeEecCCHHHHHHhh
Confidence 699999999999865
No 4
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=100.00 E-value=2e-38 Score=253.64 Aligned_cols=131 Identities=42% Similarity=0.743 Sum_probs=124.6
Q ss_pred HHHHHHHHHhcCCcEEEEecCcccc-CCCCCCCCceEEecCCHHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhC
Q 027323 63 MGLVSQAVYDGGRHVLGVIPKTLMP-REITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLG 141 (225)
Q Consensus 63 M~a~a~gA~~~GG~viGi~P~~~~~-~e~~~~~~~~~i~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg 141 (225)
|+|+++||+++||+|+||+|..+.+ ++.+++.+++++.+++|++||.+|+++||+||++|||+|||+|++++|+|.|++
T Consensus 1 M~a~~~ga~~~gG~viGi~p~~~~~~~~~~~~~~~~~~~~~~~~~Rk~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~ 80 (133)
T PF03641_consen 1 MGAVAKGAKEAGGRVIGIIPEFLFPFEEPPNPYVTELIIVDDMFERKEIMIESSDAFIALPGGIGTLDELFEALTLMQLG 80 (133)
T ss_dssp HHHHHHHHHHTTTTEEEEEETTGTTTTTTCCTTSSEEEEESSHHHHHHHHHHHESEEEEES-SHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHcCCeEEEEecCccccccccCCcccCceeEeCChHHHHHHHHHhCCEEEEEecCCchHHHHHHHHHHHhhc
Confidence 9999999999999999999998888 667777789999999999999999999999999999999999999999999999
Q ss_pred CCCC-ceEEEecCccchhHHHHHHHHHHcCCCCcccccceEEcCCHHHHHHHH
Q 027323 142 IHDK-PVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKL 193 (225)
Q Consensus 142 ~~~k-Piill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~l 193 (225)
.++| ||+|+|.+|||+++++|+++|+++||++++..+.+.+++|++|+++.|
T Consensus 81 ~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 81 RHNKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVDDPEEALEYI 133 (133)
T ss_dssp SSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEESSHHHHHHHH
T ss_pred cccCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeCCHHHHHhhC
Confidence 8777 999999999999999999999999999999999999999999999875
No 5
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=99.63 E-value=1.5e-14 Score=124.98 Aligned_cols=155 Identities=14% Similarity=0.189 Sum_probs=115.4
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCcEEEEecCccc---cCCC-----
Q 027323 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLM---PREI----- 90 (225)
Q Consensus 19 ~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi~P~~~~---~~e~----- 90 (225)
+.|+|. |||..+ +...+.|+++++.|+++|+.||+|++. |+|.+++++|+++||.+|+|+|..+. |.+.
T Consensus 45 ~~iaIv-GsR~~s-~~~~~~a~~l~~~l~~~g~~IVSG~A~-GiD~~ah~~al~~~g~tIaVl~~gld~~yp~~n~~l~~ 121 (220)
T TIGR00732 45 RKVAIV-GTRRPT-KYGERWTRKLAEELAKNGVTIVSGLAL-GIDGIAHKAALKVNGRTIAVLGTGLDQIYPRQNSKLAA 121 (220)
T ss_pred CeEEEE-cCCCCC-HHHHHHHHHHHHHHHhCCCEEEcCchh-hHHHHHHHHHHHcCCCEEEEECCCCccCCchhhHHHHH
Confidence 679998 577654 556688999999999999999999987 99999999999999999999987652 2210
Q ss_pred --CCCC---CceE-----EecCCHHHHHHHHHHhcCeEEEecCC--CCcHHHHHHHHHHHHhCCCCCceEEEecCccchh
Q 027323 91 --TGDT---VGEV-----KAVSGMHQRKAEMARQADAFIALPGG--YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNS 158 (225)
Q Consensus 91 --~~~~---~~~~-----i~~~~m~~Rk~~mv~~sDa~IvlpGG--~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~ 158 (225)
..+. +++. .....|..|++++...||++|++..+ .||+.++-.++. .+|||+.+-. ..+++
T Consensus 122 ~i~~~gglliSe~p~~~~~~~~~f~~RNriia~ls~~vivve~~~~sGtl~ta~~A~~------~gr~v~~~pg-~~~~~ 194 (220)
T TIGR00732 122 KIAENGGLLLSEYPPDTKPIKYNFPKRNRIISGLSRAVLVVEAPLKSGALITARYALE------QGREVFAYPG-DLNSP 194 (220)
T ss_pred HHHHcCCEEEEecCCCCCCCcccHHHHHHHHHHhcCEEEEEECCCCCchHHHHHHHHH------hCCcEEEEcC-CCCCc
Confidence 0000 1111 12236789999999999999999986 799999988774 3799999843 34554
Q ss_pred HHHHHHHHHHcCCCCcccccceEEcCCHHHHHHH
Q 027323 159 LLSFIDKAVDEGFIAPAARYIIVSAQTAHELICK 192 (225)
Q Consensus 159 l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~ 192 (225)
..+--..++++|- ..+.+++|+++.
T Consensus 195 ~~~G~~~Li~~GA---------~~i~~~~d~~~~ 219 (220)
T TIGR00732 195 ESDGCHKLIEQGA---------ALITSAKDILET 219 (220)
T ss_pred cchHHHHHHHCCC---------EEECCHHHHHHh
Confidence 4454555666663 346778888764
No 6
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=99.29 E-value=8.7e-11 Score=100.98 Aligned_cols=143 Identities=20% Similarity=0.202 Sum_probs=86.3
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCcEEEEecCccc---cCCCC---
Q 027323 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLM---PREIT--- 91 (225)
Q Consensus 18 ~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi~P~~~~---~~e~~--- 91 (225)
.+.|+|. |||.. ++...+.|+++++.|+++|+.||+|+.. |+..++.++|+++||.+|+|+|.-+. |.+..
T Consensus 44 ~~~iaIv-GsR~~-s~~g~~~a~~l~~~l~~~g~~vvSGlA~-GiD~~ah~~al~~~g~tIaVl~~gl~~~yP~~n~~l~ 120 (212)
T PF02481_consen 44 QPSIAIV-GSRNP-SEYGLKFAKKLARELAKAGIVVVSGLAK-GIDAAAHRGALDAGGPTIAVLACGLDNIYPKENRELA 120 (212)
T ss_dssp S-EEEEE---SS---HHHHHHHHHHHHHHHHHT-EEEE---T-THHHHHHHHHTTT---EEEE-SS-TTS-SSGGGHHHH
T ss_pred CceEEEE-cCCCC-CHHHHHHHHHHHHHHhhCCEEEEcCCCC-CHHHHHHHHHHHccCCEEEEECCCcccccchhhHHHH
Confidence 5689998 67776 4667789999999999999999999987 99999999999999999999987552 22100
Q ss_pred -----CCCC-------ceEEecCCHHHHHHHHHHhcCeEEEecC--CCCcHHHHHHHHHHHHhCCCCCceEEEecCccch
Q 027323 92 -----GDTV-------GEVKAVSGMHQRKAEMARQADAFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYN 157 (225)
Q Consensus 92 -----~~~~-------~~~i~~~~m~~Rk~~mv~~sDa~IvlpG--G~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~ 157 (225)
.+.+ ..-.....|.+|++++..+||++||+.- ..||+.-+-.++.+ +|||+++.. ..++
T Consensus 121 ~~i~~~~glliSe~~p~~~~~~~~f~~RNRiiaaLs~~~vvvea~~~sGt~~ta~~A~~~------gr~v~~vp~-~~~~ 193 (212)
T PF02481_consen 121 ERILDEGGLLISEYPPGTKPSRWRFPERNRIIAALSDAVVVVEAGEKSGTLHTARFALEQ------GRPVFAVPG-PIDD 193 (212)
T ss_dssp HHHHHTT-EEEE-S-TT----TTHHHHHHHHHHHH-S-EEE----TT-THHHHHHHHHHH------T--EEE-----TT-
T ss_pred HHHHhcCcEEEeCCCCCCCcccccChHHHHHHHHhCCeEEEEecCCCChHHHHHHHHHHc------CCeEEEEeC-CCCC
Confidence 0000 0112234668999999999999999864 57998888777753 699998743 3566
Q ss_pred hHHHHHHHHHHcC
Q 027323 158 SLLSFIDKAVDEG 170 (225)
Q Consensus 158 ~l~~~l~~~~~~g 170 (225)
+....-..++++|
T Consensus 194 ~~~~G~~~Li~~G 206 (212)
T PF02481_consen 194 PNSEGNNELIKEG 206 (212)
T ss_dssp GGGHHHHHHHHTT
T ss_pred cccHHHHHHHHcC
Confidence 5555556677666
No 7
>PRK10736 hypothetical protein; Provisional
Probab=99.19 E-value=8.8e-10 Score=102.02 Aligned_cols=158 Identities=15% Similarity=0.176 Sum_probs=115.9
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCcEEEEecCcc---ccCC------
Q 027323 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTL---MPRE------ 89 (225)
Q Consensus 19 ~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi~P~~~---~~~e------ 89 (225)
+.|+|. |||..+ +.-.+.++++++.||++|+.||+|+.. |+..+++++|+++||.+|+|++.-+ +|.+
T Consensus 108 ~~iaiV-GsR~~s-~yg~~~~~~l~~~la~~g~~IVSGlA~-GiD~~AH~~aL~~~g~TIaVlg~Gld~~YP~~n~~L~~ 184 (374)
T PRK10736 108 PQLAVV-GSRAHS-WYGERWGRLFCEELAKNGLTITSGLAR-GIDGVAHRAALQAGGKTIAVLGNGLENIYPRRHARLAE 184 (374)
T ss_pred CeEEEE-CCCCCC-HHHHHHHHHHHHHHHHCCCEEECcchh-hHHHHHHHHHHHcCCCEEEEECCCCCccCCHhHHHHHH
Confidence 579998 677754 556678999999999999999999987 9999999999999999999987544 2321
Q ss_pred -C-CCCC--CceE-----EecCCHHHHHHHHHHhcCeEEEecC--CCCcHHHHHHHHHHHHhCCCCCceEEEecCccchh
Q 027323 90 -I-TGDT--VGEV-----KAVSGMHQRKAEMARQADAFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNS 158 (225)
Q Consensus 90 -~-~~~~--~~~~-----i~~~~m~~Rk~~mv~~sDa~IvlpG--G~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~ 158 (225)
. ..+. ++|. ....+|..||+++...|+++||+-- ..|||.=.-.++. .+|+|+.+-. ...++
T Consensus 185 ~I~~~~G~liSEyp~~~~p~~~~Fp~RNRIIagLS~~viVvEA~~kSGsliTA~~Al~------~gR~VfavPG-~i~~~ 257 (374)
T PRK10736 185 SIIEQGGALVSEFPLDTPPLAANFPRRNRIISGLSKGVLVVEAALRSGSLVTARCALE------QGRDVFALPG-PIGNP 257 (374)
T ss_pred HHHhcCCEEEECCCCCCCCChhhhhHhhhHHHHhCCeEEEEEeCCCCchHHHHHHHHH------hCCeEEEEcC-CCCCc
Confidence 0 0000 0111 1234778999999999999999864 4688776665553 4799988842 34555
Q ss_pred HHHHHHHHHHcCCCCcccccceEEcCCHHHHHHHHHh
Q 027323 159 LLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEE 195 (225)
Q Consensus 159 l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~l~~ 195 (225)
...-..+++.+|. ..+.+++|+++.+..
T Consensus 258 ~s~G~n~LI~~GA---------~lv~~~~Di~~~l~~ 285 (374)
T PRK10736 258 GSEGPHWLIKQGA---------YLVTSPEDILENLQF 285 (374)
T ss_pred cchhHHHHHHCCC---------EEeCCHHHHHHHhhh
Confidence 5555555666663 568889999998853
No 8
>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=98.99 E-value=1.5e-08 Score=93.17 Aligned_cols=159 Identities=19% Similarity=0.230 Sum_probs=110.1
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCcEEEEecCcc---ccCCC-----
Q 027323 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTL---MPREI----- 90 (225)
Q Consensus 19 ~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi~P~~~---~~~e~----- 90 (225)
+.|+|. |||..+ ..-.+.++.|++.|+++|++||+|+.. |+..+++++|++++|++|+|+..-+ +|++.
T Consensus 112 ~~vaIV-GsR~~S-~~g~~~~~~~a~~L~~~g~~IvSGlA~-GID~~AH~aaL~~~G~TiaVl~~Gld~iYP~~n~~l~~ 188 (350)
T COG0758 112 PSVAIV-GSRKPS-KYGLDYTRDLAEYLAQNGITIVSGLAR-GIDTEAHKAALNAGGKTIAVLATGLDKIYPRENIKLAE 188 (350)
T ss_pred CceEEE-eCCCCC-HhHHHHHHHHHHHHHhCCeEEEecCcc-eecHHHHHHHHHcCCcEEEEEcCCCCccCChhhHHHHH
Confidence 679998 677764 456688999999999999999999987 9999999999999999999987544 23210
Q ss_pred --CCCC--Cce-----EEecCCHHHHHHHHHHhcCeEEEecCC--CCcHHHHHHHHHHHHhCCCCCceEEEecCccchhH
Q 027323 91 --TGDT--VGE-----VKAVSGMHQRKAEMARQADAFIALPGG--YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSL 159 (225)
Q Consensus 91 --~~~~--~~~-----~i~~~~m~~Rk~~mv~~sDa~IvlpGG--~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l 159 (225)
..+. ++| -+...+|..||+++..+|+++||+-.+ .|+|.=.-.++. .++.|+.+-++ ..++.
T Consensus 189 ~i~~~g~liSEypp~~~p~~~~Fp~RNRiIagLS~gvlVvEA~~kSGSLiTA~~Ale------qgR~VfavPg~-~~~~~ 261 (350)
T COG0758 189 KIAENGLLISEYPPDTEPNKGNFPRRNRLIAGLSDGVLVVEAGLKSGSLITAKYALE------QGRDVFAVPGS-IDNPR 261 (350)
T ss_pred HHHhcCeEEeecCCCCCcccccchHHHHHHHHhcCceEEEecCcccccHHHHHHHHH------cCCeeEEcCCC-ccccc
Confidence 0110 011 123348899999999999999999776 688876666654 36777766432 22322
Q ss_pred HHHHHHHHHcCCCCcccccceEEcCCHHHHHHHHHhh
Q 027323 160 LSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEEY 196 (225)
Q Consensus 160 ~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~l~~~ 196 (225)
..=-..++++|- ..+.+.+|+++.+...
T Consensus 262 s~G~~~LI~~GA---------~lv~~~~dil~~l~~~ 289 (350)
T COG0758 262 SEGCNKLIKEGA---------KLVTSAEDILEELNAL 289 (350)
T ss_pred ccchHHHHHccc---------hhcccHHHHHHHhhhh
Confidence 222233455553 3355667776666543
No 9
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=96.47 E-value=0.033 Score=45.40 Aligned_cols=93 Identities=23% Similarity=0.231 Sum_probs=52.0
Q ss_pred EEEcCCCcchHHHHHHHHHhcCCcEEEEecCccccCCC-CCCCC-ceEEecCCHHHHHHHHHHhcCeEEEecCCC---Cc
Q 027323 53 LVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREI-TGDTV-GEVKAVSGMHQRKAEMARQADAFIALPGGY---GT 127 (225)
Q Consensus 53 lVtGGG~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~-~~~~~-~~~i~~~~m~~Rk~~mv~~sDa~IvlpGG~---GT 127 (225)
||+||- .|+..|+-+.|+++|-..=|-.|.--...+. -+..| -......+...|.++.++-||+-++|-=|. ||
T Consensus 1 IiSGGQ-TGvDRAALDaAi~~gi~~GGWcP~GR~aEDG~ip~~Y~L~E~~~~~Y~~RT~~NV~DsDgTlI~~~g~l~GGt 79 (145)
T PF12694_consen 1 IISGGQ-TGVDRAALDAAIAHGIPHGGWCPKGRRAEDGPIPARYPLQETPSSGYRQRTEWNVRDSDGTLIFTRGELTGGT 79 (145)
T ss_dssp EE-----TTHHHHHHHHHHHTT--EE-EE-GGG--TTSS--TTS--EE-SS--HHHHHHHHHHTSSEEEEEESSS--HHH
T ss_pred CccCcc-ccHHHHHHHHHHHcCCCccCcCCCCcccccCcCCccccceecCCCCHHHHHHhhhhhcCeEEEEecCCCCcHH
Confidence 688885 5999999999999998777888864433221 12222 112234678999999999999987776432 55
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEec
Q 027323 128 LEELLEVITWAQLGIHDKPVGLLNV 152 (225)
Q Consensus 128 L~El~~~~~~~qlg~~~kPiill~~ 152 (225)
++...++ .++.||+.+++.
T Consensus 80 --~lT~~~a----~~~~KP~l~i~~ 98 (145)
T PF12694_consen 80 --ALTVEFA----RKHGKPCLHIDL 98 (145)
T ss_dssp --HHHHHHH----HHTT--EEEETS
T ss_pred --HHHHHHH----HHhCCCEEEEec
Confidence 3333332 247899998854
No 10
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.16 E-value=0.4 Score=50.89 Aligned_cols=173 Identities=20% Similarity=0.216 Sum_probs=100.1
Q ss_pred eEEEEcCCCCCC-ChHHHHHHHH-HHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCC-----cE--EEEecCccccC--
Q 027323 20 RVCVFCGSSPGK-SPSYQLAAIQ-LGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGR-----HV--LGVIPKTLMPR-- 88 (225)
Q Consensus 20 ~I~VfggS~~~~-~~~~~~~A~~-lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG-----~v--iGi~P~~~~~~-- 88 (225)
.|.|-||...-. .+.+.+.-++ |-+..-.-|-=|+|||-..|+|.-|.+++++++- ++ |||-|-.....
T Consensus 120 vISV~GG~~nF~L~pkl~~~frkGLvkaAqtTGAWIiTsG~~tGv~khVg~Al~dh~~~s~~~~ivaiGiApWGvv~nr~ 199 (1381)
T KOG3614|consen 120 VISVHGGLQNFELQPKLKSVFRKGLIKAAQTTGAWIITSGLDTGVMKHVGSALRDHSLASSGGKIVAIGIAPWGIVKNRD 199 (1381)
T ss_pred EEEEecCCCCccccHHHHHHHHHHHHHHHhhcCeEEEecCcccchHHHHHHHHHhccchhccCceEEEeeccceeeechh
Confidence 699998887654 4555433222 2233333699999999999999999999998642 33 66655322110
Q ss_pred --------------CCC-------CCCCceEEecC---------CHHHHHHH--HHH----hc----C---eEEEecCCC
Q 027323 89 --------------EIT-------GDTVGEVKAVS---------GMHQRKAE--MAR----QA----D---AFIALPGGY 125 (225)
Q Consensus 89 --------------e~~-------~~~~~~~i~~~---------~m~~Rk~~--mv~----~s----D---a~IvlpGG~ 125 (225)
+.+ ++..+..+.++ ...-|+++ -+. .+ + .++++.||.
T Consensus 200 ~lI~~d~~~~Y~~~~~~~~~L~~Ln~nhShFiLvDnGTvGkygae~~lR~~LEk~Is~q~~~~~~~~~iPvvc~v~eGg~ 279 (1381)
T KOG3614|consen 200 DLIGGDFTVSYQTDDNPLNKLTILNNNHSHFILVDNGTVGKYGAETKLRLRLEKYISLQKINSGGTGKIPVVCLVLEGGP 279 (1381)
T ss_pred hhccCCcceeeeecCCCCcceeeccCCCceeEEecCCccCccchHHHHHHhchhhHhhhccCCCCCCccceEEEEecCCc
Confidence 001 11112233222 11223322 111 11 1 477889999
Q ss_pred CcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHH-HHHHcCCCCcccccc-eEE--------cCCHHHHHHHHHh
Q 027323 126 GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFID-KAVDEGFIAPAARYI-IVS--------AQTAHELICKLEE 195 (225)
Q Consensus 126 GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~-~~~~~g~i~~~~~~~-i~~--------~~d~ee~~~~l~~ 195 (225)
+|+.=+.+..+- ..+.|++++.+.|--.++++++- .....|.++...... +.+ -.|.+.++.+|.+
T Consensus 280 nti~~I~~~v~~----~~~iPvvVc~GSGraADilA~~~~~~~~~g~l~~~~~~~i~~~i~~~~~fs~~d~~~l~~~l~e 355 (1381)
T KOG3614|consen 280 NTLAIILDYVTD----KPPIPVVVCAGSGRAADILAFAHEEHGAPGILSDAEREQILHLIRLTFEFSEFDAEKLIKWLRE 355 (1381)
T ss_pred hHHHHHHHHhcc----CCCCceEEEcCCchHHHHHHHHHHhhcCCCcccHHHHHHHHHhHHHHccCCHHHHHHHHHHHHH
Confidence 998877765532 34679999998888888888874 444556655554432 111 1244556666655
Q ss_pred h
Q 027323 196 Y 196 (225)
Q Consensus 196 ~ 196 (225)
.
T Consensus 356 c 356 (1381)
T KOG3614|consen 356 C 356 (1381)
T ss_pred H
Confidence 4
No 11
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=94.80 E-value=0.061 Score=41.18 Aligned_cols=46 Identities=37% Similarity=0.350 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHhcCeEEEecCC----CCcHHHHHHHHHHHHhCCCCCceEEEecC
Q 027323 102 SGMHQRKAEMARQADAFIALPGG----YGTLEELLEVITWAQLGIHDKPVGLLNVD 153 (225)
Q Consensus 102 ~~m~~Rk~~mv~~sDa~IvlpGG----~GTL~El~~~~~~~qlg~~~kPiill~~~ 153 (225)
....+|....++.||++|+.-.+ .||.-|+..++.+ +|||+++..+
T Consensus 49 ~~i~~~d~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~al------gkpv~~~~~d 98 (113)
T PF05014_consen 49 REIFERDLEGIRECDIVIANLDGFRPDSGTAFELGYAYAL------GKPVILLTED 98 (113)
T ss_dssp HHHHHHHHHHHHHSSEEEEEECSSS--HHHHHHHHHHHHT------TSEEEEEECC
T ss_pred HHHHHHHHHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHC------CCEEEEEEcC
Confidence 34578888999999998886555 8999999988863 7999998654
No 12
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=93.78 E-value=2.1 Score=35.95 Aligned_cols=103 Identities=24% Similarity=0.363 Sum_probs=52.7
Q ss_pred cceEEEEcCCCCC-------CChHHHHHHHHHHH---HHHHCCCeEEEcCCCcchHHHHHHHHHhcCC-----cEEEEec
Q 027323 18 FKRVCVFCGSSPG-------KSPSYQLAAIQLGK---QLVERNIDLVYGGGSIGLMGLVSQAVYDGGR-----HVLGVIP 82 (225)
Q Consensus 18 ~~~I~VfggS~~~-------~~~~~~~~A~~lG~---~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG-----~viGi~P 82 (225)
|++|||- |.|+- .+|.+...-..|-+ .+-++|++-+.-||..|+---+++.+++... +.+-++|
T Consensus 1 M~~~~~T-GyR~~eL~~f~~~~~~~~~ik~~L~~~i~~lie~G~~~fi~GgalG~D~waae~vl~LK~~yp~ikL~~v~P 79 (177)
T PF06908_consen 1 MKRCCFT-GYRPYELGIFNEKDPKIQVIKKALKKQIIELIEEGVRWFITGGALGVDLWAAEVVLELKKEYPEIKLALVLP 79 (177)
T ss_dssp --EEEEE-E--GGGGT--SS--HHHHHHHHHHHHHHHHHHTTT--EEEE---TTHHHHHHHHHHTTTTT-TT-EEEEEES
T ss_pred CeEEEEE-ecChhhcCCCCCCchhHHHHHHHHHHHHHHHHHCCCCEEEECCcccHHHHHHHHHHHHHhhhhheEEEEEEc
Confidence 3456665 34433 35555444444444 3345788765444456999999999998643 4455566
Q ss_pred CccccCCCCCC----------CCceEEec--------CCHHHHHHHHHHhcCeEEEe
Q 027323 83 KTLMPREITGD----------TVGEVKAV--------SGMHQRKAEMARQADAFIAL 121 (225)
Q Consensus 83 ~~~~~~e~~~~----------~~~~~i~~--------~~m~~Rk~~mv~~sDa~Ivl 121 (225)
=.......... ..+.++.+ .-|..|++.|+++||.+|++
T Consensus 80 f~~q~~~W~~~~q~~y~~il~~aD~v~~vs~~~Y~~~~~~~~rn~fMvdhsd~~iav 136 (177)
T PF06908_consen 80 FENQGNNWNEANQERYQSILEQADFVVVVSERPYYSPGQLQKRNRFMVDHSDGLIAV 136 (177)
T ss_dssp SB-TTTTS-HHHHHHHHHHHHH-SEEEESSSSB---HHHHHHHHHHHHHHSSEEEEE
T ss_pred ccchhhcCCHHHHHHHHHHHHhCCEEEEccCCCCCCHHHHHHHhHHHHhCCCeEEEE
Confidence 33222111100 01222222 23579999999999998887
No 13
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=92.83 E-value=3.2 Score=36.37 Aligned_cols=120 Identities=25% Similarity=0.256 Sum_probs=65.1
Q ss_pred CCCeEEEcCCCcchHHHHHHHHHhcCC-cEEEEecCccccCCCCCCCCceEEecCCHHHHHHHHHHhcCeEEEecCCCCc
Q 027323 49 RNIDLVYGGGSIGLMGLVSQAVYDGGR-HVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGT 127 (225)
Q Consensus 49 ~g~~lVtGGG~~GlM~a~a~gA~~~GG-~viGi~P~~~~~~e~~~~~~~~~i~~~~m~~Rk~~mv~~sDa~IvlpGG~GT 127 (225)
..+.|||=||. |.- .+.+.+.+..+ .++-+-|... +.....+ .+.-+. ...-.-.+..||++|. -||.+|
T Consensus 192 ~~~iLv~~gg~-~~~-~~~~~l~~~~~~~~~v~g~~~~---~~~~~ni-~~~~~~--~~~~~~~m~~ad~vIs-~~G~~t 262 (318)
T PF13528_consen 192 EPKILVYFGGG-GPG-DLIEALKALPDYQFIVFGPNAA---DPRPGNI-HVRPFS--TPDFAELMAAADLVIS-KGGYTT 262 (318)
T ss_pred CCEEEEEeCCC-cHH-HHHHHHHhCCCCeEEEEcCCcc---cccCCCE-EEeecC--hHHHHHHHHhCCEEEE-CCCHHH
Confidence 56778877664 555 55666666554 3333322221 1111111 122111 1222334678896655 489999
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEEcC----CHHHHHHHHHh
Q 027323 128 LEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQ----TAHELICKLEE 195 (225)
Q Consensus 128 L~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~----d~ee~~~~l~~ 195 (225)
+.|+.. .++|++++-..++++.... .+.+.+.|.. ...+ +++.+.++|++
T Consensus 263 ~~Ea~~---------~g~P~l~ip~~~~~EQ~~~-a~~l~~~G~~--------~~~~~~~~~~~~l~~~l~~ 316 (318)
T PF13528_consen 263 ISEALA---------LGKPALVIPRPGQDEQEYN-ARKLEELGLG--------IVLSQEDLTPERLAEFLER 316 (318)
T ss_pred HHHHHH---------cCCCEEEEeCCCCchHHHH-HHHHHHCCCe--------EEcccccCCHHHHHHHHhc
Confidence 888752 4799999876665554332 1344454543 2222 67888888765
No 14
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=92.61 E-value=1.5 Score=35.35 Aligned_cols=71 Identities=17% Similarity=0.180 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcCeEEEecCC----CCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccce
Q 027323 105 HQRKAEMARQADAFIALPGG----YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYII 180 (225)
Q Consensus 105 ~~Rk~~mv~~sDa~IvlpGG----~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i 180 (225)
.-|-+.+++.||.+||.-|- +.|.-....+.+ .+||+|++.....-.+|.+. + ....
T Consensus 63 ~iRT~~li~~aDvVVvrFGekYKQWNaAfDAg~a~A------lgKplI~lh~~~~~HpLKEv-d------------a~A~ 123 (141)
T PF11071_consen 63 AIRTRTLIEKADVVVVRFGEKYKQWNAAFDAGYAAA------LGKPLITLHPEELHHPLKEV-D------------AAAL 123 (141)
T ss_pred HHHHHHHHhhCCEEEEEechHHHHHHHHhhHHHHHH------cCCCeEEecchhccccHHHH-h------------HhhH
Confidence 57888899999999998774 333333333332 37999999877666676664 1 1224
Q ss_pred EEcCCHHHHHHHHH
Q 027323 181 VSAQTAHELICKLE 194 (225)
Q Consensus 181 ~~~~d~ee~~~~l~ 194 (225)
..+++|+.+++.|+
T Consensus 124 a~~et~~Qvv~iL~ 137 (141)
T PF11071_consen 124 AVAETPEQVVEILR 137 (141)
T ss_pred hhhCCHHHHHHHHH
Confidence 56899999998885
No 15
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=92.23 E-value=1.5 Score=31.40 Aligned_cols=61 Identities=20% Similarity=0.220 Sum_probs=45.5
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHC-CCeEEEcCCCcchHHHHHHHHHhcCCcEEEEecC
Q 027323 20 RVCVFCGSSPGKSPSYQLAAIQLGKQLVER-NIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPK 83 (225)
Q Consensus 20 ~I~VfggS~~~~~~~~~~~A~~lG~~LA~~-g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi~P~ 83 (225)
+|.| ||++.-.|... .-..|-+.+++. ...||+||.+.|+-..+.+=|.+.|-.++-+.|+
T Consensus 5 rVli-~GgR~~~D~~~--i~~~Ld~~~~~~~~~~lvhGga~~GaD~iA~~wA~~~gv~~~~~~ad 66 (71)
T PF10686_consen 5 RVLI-TGGRDWTDHEL--IWAALDKVHARHPDMVLVHGGAPKGADRIAARWARERGVPVIRFPAD 66 (71)
T ss_pred EEEE-EECCccccHHH--HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHHHCCCeeEEeCcC
Confidence 4544 57787665433 345677777774 6788999985699999999999998888877654
No 16
>PRK10565 putative carbohydrate kinase; Provisional
Probab=91.94 E-value=0.7 Score=44.81 Aligned_cols=99 Identities=19% Similarity=0.174 Sum_probs=53.3
Q ss_pred CCCeEEEcCCCcchHHHH---HHHHHhcC-CcEEEEecCccccCCCCCCCCceEEecCCHHHHHHHHHHhcCeEEEecCC
Q 027323 49 RNIDLVYGGGSIGLMGLV---SQAVYDGG-RHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGG 124 (225)
Q Consensus 49 ~g~~lVtGGG~~GlM~a~---a~gA~~~G-G~viGi~P~~~~~~e~~~~~~~~~i~~~~m~~Rk~~mv~~sDa~IvlpGG 124 (225)
+|+.+|.||.. +-++|+ +++|+++| |.|.=+.|....+ ......-|+++.+-..+.-.-+...+|++++=||
T Consensus 254 ~G~vliigGs~-~~~GA~~Laa~aAlr~GaGlv~~~~~~~~~~--~~~~~~Pe~~~~~~~~~~~~~~~~~~~a~viGpG- 329 (508)
T PRK10565 254 HGRLLIIGGDH-GTAGAIRMAGEAALRSGAGLVRVLTRSENIA--PLLTARPELMVHELTPDSLEESLEWADVVVIGPG- 329 (508)
T ss_pred CCeEEEEECCC-CCccHHHHHHHHHHHhCCCeEEEEeChhhHH--HHhhcCceeEEecCCHhHHHHHhhcCCEEEEeCC-
Confidence 69999999965 666664 77777776 4555455543211 0111122344332111112223467898877776
Q ss_pred CCcHHHHHHHHHHHHhCCCCCceEEEecCc
Q 027323 125 YGTLEELLEVITWAQLGIHDKPVGLLNVDG 154 (225)
Q Consensus 125 ~GTL~El~~~~~~~qlg~~~kPiill~~~g 154 (225)
.|+-++...++. .+...++|+|| +.++
T Consensus 330 lg~~~~~~~~~~--~~~~~~~P~VL-DAda 356 (508)
T PRK10565 330 LGQQEWGKKALQ--KVENFRKPMLW-DADA 356 (508)
T ss_pred CCCCHHHHHHHH--HHHhcCCCEEE-EchH
Confidence 666555544332 22234688755 6665
No 17
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=90.45 E-value=15 Score=34.13 Aligned_cols=79 Identities=16% Similarity=0.072 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccc--hhHHHHHHHHHHcCCCCcccccce
Q 027323 103 GMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYY--NSLLSFIDKAVDEGFIAPAARYII 180 (225)
Q Consensus 103 ~m~~Rk~~mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w--~~l~~~l~~~~~~g~i~~~~~~~i 180 (225)
.|.......+..||. |+.-.|..|+.|++. .++|.|++-.. ++ ++=..-.+.+.+.|.-. +
T Consensus 241 ~f~~dm~~~~~~ADL-vIsRaGa~Ti~E~~a---------~g~P~IliP~p-~~~~~~Q~~NA~~l~~~gaa~------~ 303 (357)
T COG0707 241 PFIDDMAALLAAADL-VISRAGALTIAELLA---------LGVPAILVPYP-PGADGHQEYNAKFLEKAGAAL------V 303 (357)
T ss_pred eHHhhHHHHHHhccE-EEeCCcccHHHHHHH---------hCCCEEEeCCC-CCccchHHHHHHHHHhCCCEE------E
Confidence 344445556778995 455667789999973 37999998542 44 22111223455555431 1
Q ss_pred EEcC--CHHHHHHHHHhhcC
Q 027323 181 VSAQ--TAHELICKLEEYVP 198 (225)
Q Consensus 181 ~~~~--d~ee~~~~l~~~~~ 198 (225)
.--+ +++++.+.|.+...
T Consensus 304 i~~~~lt~~~l~~~i~~l~~ 323 (357)
T COG0707 304 IRQSELTPEKLAELILRLLS 323 (357)
T ss_pred eccccCCHHHHHHHHHHHhc
Confidence 1111 25577777776543
No 18
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=90.11 E-value=7.7 Score=35.23 Aligned_cols=72 Identities=17% Similarity=0.157 Sum_probs=41.6
Q ss_pred HHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEEcCCHHHH
Q 027323 110 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHEL 189 (225)
Q Consensus 110 ~mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~ 189 (225)
.++..+|+|| -.||.||+.|... +++|++++-. +.| =..+.+.+.+.|.-..-.... -+++++
T Consensus 300 ~ll~~~d~~I-~hgG~~t~~eal~---------~GvP~v~~P~--~~d-Q~~~a~~~~~~G~g~~l~~~~----~~~~~l 362 (401)
T cd03784 300 WLLPRCAAVV-HHGGAGTTAAALR---------AGVPQLVVPF--FGD-QPFWAARVAELGAGPALDPRE----LTAERL 362 (401)
T ss_pred HHhhhhheee-ecCCchhHHHHHH---------cCCCEEeeCC--CCC-cHHHHHHHHHCCCCCCCCccc----CCHHHH
Confidence 3457799766 6777899887752 5899999843 223 223334566655332111111 257777
Q ss_pred HHHHHhhcC
Q 027323 190 ICKLEEYVP 198 (225)
Q Consensus 190 ~~~l~~~~~ 198 (225)
.+.+++.+.
T Consensus 363 ~~al~~~l~ 371 (401)
T cd03784 363 AAALRRLLD 371 (401)
T ss_pred HHHHHHHhC
Confidence 777766543
No 19
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=89.57 E-value=11 Score=33.95 Aligned_cols=76 Identities=24% Similarity=0.216 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEE
Q 027323 103 GMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVS 182 (225)
Q Consensus 103 ~m~~Rk~~mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~ 182 (225)
++.+...-++..||++|.-+|| .|+.| ++. .++|+|+++..+..+. +..+.+.+.|+ .+.
T Consensus 262 g~~~~~~~l~~~aD~~v~~~gg-~t~~E---A~a------~g~PvI~~~~~~g~~~--~n~~~~~~~G~--------~~~ 321 (380)
T PRK13609 262 GYVENIDELFRVTSCMITKPGG-ITLSE---AAA------LGVPVILYKPVPGQEK--ENAMYFERKGA--------AVV 321 (380)
T ss_pred echhhHHHHHHhccEEEeCCCc-hHHHH---HHH------hCCCEEECCCCCCcch--HHHHHHHhCCc--------EEE
Confidence 3333444567899988765554 46444 443 3799988764222211 11122233343 345
Q ss_pred cCCHHHHHHHHHhhcC
Q 027323 183 AQTAHELICKLEEYVP 198 (225)
Q Consensus 183 ~~d~ee~~~~l~~~~~ 198 (225)
..|++++.+.|.+...
T Consensus 322 ~~~~~~l~~~i~~ll~ 337 (380)
T PRK13609 322 IRDDEEVFAKTEALLQ 337 (380)
T ss_pred ECCHHHHHHHHHHHHC
Confidence 6788888888877653
No 20
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=89.42 E-value=9 Score=35.01 Aligned_cols=72 Identities=21% Similarity=0.213 Sum_probs=42.4
Q ss_pred HHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEEcCCH
Q 027323 107 RKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTA 186 (225)
Q Consensus 107 Rk~~mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ 186 (225)
....++..||++|.-+| .+|+.|. ++ .++|+|+.+.-. ....- -.+.+.+.|. -..+.|+
T Consensus 275 ~~~~l~~aaDv~V~~~g-~~ti~EA---ma------~g~PvI~~~~~p-gqe~g-n~~~i~~~g~--------g~~~~~~ 334 (382)
T PLN02605 275 NMEEWMGACDCIITKAG-PGTIAEA---LI------RGLPIILNGYIP-GQEEG-NVPYVVDNGF--------GAFSESP 334 (382)
T ss_pred cHHHHHHhCCEEEECCC-cchHHHH---HH------cCCCEEEecCCC-ccchh-hHHHHHhCCc--------eeecCCH
Confidence 34456789999887554 5786554 43 479999986311 01110 1122333332 2235899
Q ss_pred HHHHHHHHhhcC
Q 027323 187 HELICKLEEYVP 198 (225)
Q Consensus 187 ee~~~~l~~~~~ 198 (225)
+++.+.+.+...
T Consensus 335 ~~la~~i~~ll~ 346 (382)
T PLN02605 335 KEIARIVAEWFG 346 (382)
T ss_pred HHHHHHHHHHHc
Confidence 999988887654
No 21
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=89.40 E-value=4.1 Score=32.94 Aligned_cols=74 Identities=23% Similarity=0.268 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCeEEEecCC-CCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEEc
Q 027323 105 HQRKAEMARQADAFIALPGG-YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 183 (225)
Q Consensus 105 ~~Rk~~mv~~sDa~IvlpGG-~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~ 183 (225)
.-|-+.+++.||.+||.-|- +=--+-.|.+=.-.. .+||+|++.....-.+|.+. +. ....++
T Consensus 66 aiRT~~li~~aDvvVvrFGekYKQWNaAfDAg~aaA---lgKplI~lh~~~~~HpLKEv-da------------aA~ava 129 (144)
T TIGR03646 66 NIRTRKLIEKADVVIALFGEKYKQWNAAFDAGYAAA---LGKPLIILRPEELIHPLKEV-DN------------KAQAVV 129 (144)
T ss_pred hHHHHHHHhhCCEEEEEechHHHHHHHHhhHHHHHH---cCCCeEEecchhccccHHHH-hH------------HHHHHh
Confidence 57888889999999997763 222222332221111 37999999877666666664 11 123568
Q ss_pred CCHHHHHHHHH
Q 027323 184 QTAHELICKLE 194 (225)
Q Consensus 184 ~d~ee~~~~l~ 194 (225)
++|+.+++.|+
T Consensus 130 etp~Qvv~iL~ 140 (144)
T TIGR03646 130 ETPEQAIETLK 140 (144)
T ss_pred cCHHHHHHHHH
Confidence 99999998885
No 22
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=88.92 E-value=16 Score=32.22 Aligned_cols=73 Identities=16% Similarity=0.108 Sum_probs=38.8
Q ss_pred HHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEEcC--CHH
Q 027323 110 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQ--TAH 187 (225)
Q Consensus 110 ~mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~--d~e 187 (225)
-++..||++|. ++|..|+-|. +. .++|++..+..+.-.......+.+.+. ....++-.. +++
T Consensus 246 ~~l~~ad~~v~-~~g~~~l~Ea---~~------~g~Pvv~~~~~~~~~~~~~~~~~i~~~------~~G~~~~~~~~~~~ 309 (348)
T TIGR01133 246 AAYAAADLVIS-RAGASTVAEL---AA------AGVPAILIPYPYAADDQYYNAKFLEDL------GAGLVIRQKELLPE 309 (348)
T ss_pred HHHHhCCEEEE-CCChhHHHHH---HH------cCCCEEEeeCCCCccchhhHHHHHHHC------CCEEEEecccCCHH
Confidence 45688998886 5554565554 42 479999986533211111000111111 112223233 489
Q ss_pred HHHHHHHhhcC
Q 027323 188 ELICKLEEYVP 198 (225)
Q Consensus 188 e~~~~l~~~~~ 198 (225)
++.+.|.+...
T Consensus 310 ~l~~~i~~ll~ 320 (348)
T TIGR01133 310 KLLEALLKLLL 320 (348)
T ss_pred HHHHHHHHHHc
Confidence 99888887663
No 23
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=88.36 E-value=7.4 Score=34.38 Aligned_cols=36 Identities=25% Similarity=0.183 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEec
Q 027323 106 QRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 152 (225)
Q Consensus 106 ~Rk~~mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~ 152 (225)
....-++..||.+|. .|| +|+.|+.. .++|++++-.
T Consensus 233 ~~m~~lm~~aDl~Is-~~G-~T~~E~~a---------~g~P~i~i~~ 268 (279)
T TIGR03590 233 ENMAELMNEADLAIG-AAG-STSWERCC---------LGLPSLAICL 268 (279)
T ss_pred HHHHHHHHHCCEEEE-CCc-hHHHHHHH---------cCCCEEEEEe
Confidence 344456788998888 666 89777752 3799998754
No 24
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=88.16 E-value=19 Score=32.88 Aligned_cols=74 Identities=19% Similarity=0.278 Sum_probs=40.2
Q ss_pred HHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccc--hhHHHHHHHHHHcCCCCcccccceEEcCCHH
Q 027323 110 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYY--NSLLSFIDKAVDEGFIAPAARYIIVSAQTAH 187 (225)
Q Consensus 110 ~mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w--~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~e 187 (225)
.++..|| +|+.-||.+|+.|+.. .++|.+++-....- .+-....+.+.+.|....-..+ .-+++
T Consensus 248 ~~~~~ad-lvIsr~G~~t~~E~~~---------~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~----~~~~~ 313 (352)
T PRK12446 248 DILAITD-FVISRAGSNAIFEFLT---------LQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEE----DVTVN 313 (352)
T ss_pred HHHHhCC-EEEECCChhHHHHHHH---------cCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchh----cCCHH
Confidence 4678999 5555667788888762 47999998321000 1122223445555543211111 11567
Q ss_pred HHHHHHHhhc
Q 027323 188 ELICKLEEYV 197 (225)
Q Consensus 188 e~~~~l~~~~ 197 (225)
++.+.+.+..
T Consensus 314 ~l~~~l~~ll 323 (352)
T PRK12446 314 SLIKHVEELS 323 (352)
T ss_pred HHHHHHHHHH
Confidence 7777777654
No 25
>PRK13660 hypothetical protein; Provisional
Probab=87.90 E-value=11 Score=31.75 Aligned_cols=108 Identities=15% Similarity=0.104 Sum_probs=57.1
Q ss_pred HHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCC-----cEEEEecCccccCCCCC----------CCCceEEe-c---
Q 027323 41 QLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGR-----HVLGVIPKTLMPREITG----------DTVGEVKA-V--- 101 (225)
Q Consensus 41 ~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG-----~viGi~P~~~~~~e~~~----------~~~~~~i~-~--- 101 (225)
+|-+.+ +.|+.-+.-||.-|+---+++-|++... +.+-++|=......... ...+.+.. .
T Consensus 34 ~l~~~~-e~G~~wfi~ggalG~d~wAaEvvl~LK~~yp~lkL~~~~PF~~q~~~W~e~~q~~y~~i~~~aD~v~~vs~~~ 112 (182)
T PRK13660 34 KLIALL-EEGLEWVIISGQLGVELWAAEVVLELKEEYPDLKLAVITPFEEHGENWNEANQEKLANILKQADFVKSISKRP 112 (182)
T ss_pred HHHHHH-HCCCCEEEECCcchHHHHHHHHHHHHHhhCCCeEEEEEeCccchhhcCCHHHHHHHHHHHHhCCEEEEecCCC
Confidence 344443 4677655444456999999999988632 35555663221111100 00112221 1
Q ss_pred ----CCHHHHHHHHHHhcCeEEEecCC---CCcHHHHHHHHHHHHhCCCCCceEEEe
Q 027323 102 ----SGMHQRKAEMARQADAFIALPGG---YGTLEELLEVITWAQLGIHDKPVGLLN 151 (225)
Q Consensus 102 ----~~m~~Rk~~mv~~sDa~IvlpGG---~GTL~El~~~~~~~qlg~~~kPiill~ 151 (225)
.-|..|++.|+++||++|++=-| -||---+-.+ ..+-..++.||.++.
T Consensus 113 y~~p~q~~~rn~fmv~~sd~~i~~YD~e~~Ggt~y~~~~A--~k~~~~~~y~i~~I~ 167 (182)
T PRK13660 113 YESPAQFRQYNQFMLEHTDGALLVYDEENEGSPKYFYEAA--KKKQEKEDYPLDLIT 167 (182)
T ss_pred CCChHHHHHHHHHHHHccCeEEEEEcCCCCCChHHHHHHH--HHhhhccCceEEEeC
Confidence 12789999999999988886322 2342211111 111123578888773
No 26
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=86.66 E-value=22 Score=31.33 Aligned_cols=77 Identities=19% Similarity=0.198 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCcc-chhHHHHHHHHHHcCCCCcccccceEEcC
Q 027323 106 QRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGY-YNSLLSFIDKAVDEGFIAPAARYIIVSAQ 184 (225)
Q Consensus 106 ~Rk~~mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~-w~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 184 (225)
+.-..+...||++|. ++|..|+.| +++ .++|++.....+. .+.-....+.+.+.|. ..++-.+
T Consensus 244 ~~~~~~l~~ad~~v~-~sg~~t~~E---am~------~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~------g~~v~~~ 307 (350)
T cd03785 244 DDMAAAYAAADLVIS-RAGASTVAE---LAA------LGLPAILIPLPYAADDHQTANARALVKAGA------AVLIPQE 307 (350)
T ss_pred hhHHHHHHhcCEEEE-CCCHhHHHH---HHH------hCCCEEEeecCCCCCCcHHHhHHHHHhCCC------EEEEecC
Confidence 344556789998885 555566444 443 3799998754321 1110001112222221 1222222
Q ss_pred --CHHHHHHHHHhhcC
Q 027323 185 --TAHELICKLEEYVP 198 (225)
Q Consensus 185 --d~ee~~~~l~~~~~ 198 (225)
|++++.+.|.+.+.
T Consensus 308 ~~~~~~l~~~i~~ll~ 323 (350)
T cd03785 308 ELTPERLAAALLELLS 323 (350)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 89999988887653
No 27
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=86.45 E-value=14 Score=33.72 Aligned_cols=70 Identities=17% Similarity=0.153 Sum_probs=39.5
Q ss_pred HHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEE-cCCHHHH
Q 027323 111 MARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVS-AQTAHEL 189 (225)
Q Consensus 111 mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~-~~d~ee~ 189 (225)
++..||+ ++..||.||+.|... +++|++++-.. .+. ..+.+.+.+.|.-. .+.. .-+++++
T Consensus 288 ll~~~~~-~I~hgG~~t~~Eal~---------~G~P~v~~p~~--~dq-~~~a~~l~~~g~g~-----~l~~~~~~~~~l 349 (392)
T TIGR01426 288 ILKKADA-FITHGGMNSTMEALF---------NGVPMVAVPQG--ADQ-PMTARRIAELGLGR-----HLPPEEVTAEKL 349 (392)
T ss_pred HHhhCCE-EEECCCchHHHHHHH---------hCCCEEecCCc--ccH-HHHHHHHHHCCCEE-----EeccccCCHHHH
Confidence 4577885 557889999877652 58999997432 121 12334444444221 1111 1246777
Q ss_pred HHHHHhhcC
Q 027323 190 ICKLEEYVP 198 (225)
Q Consensus 190 ~~~l~~~~~ 198 (225)
.+.+.+.+.
T Consensus 350 ~~ai~~~l~ 358 (392)
T TIGR01426 350 REAVLAVLS 358 (392)
T ss_pred HHHHHHHhc
Confidence 777776653
No 28
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=86.43 E-value=6.3 Score=35.48 Aligned_cols=31 Identities=35% Similarity=0.293 Sum_probs=21.8
Q ss_pred HHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEE
Q 027323 109 AEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 150 (225)
Q Consensus 109 ~~mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill 150 (225)
..+...||++|. ++|..|+ |.. . .++|+|+.
T Consensus 256 ~~~~~~aDl~v~-~sG~~~l-Ea~---a------~G~PvI~~ 286 (380)
T PRK00025 256 REAMAAADAALA-ASGTVTL-ELA---L------LKVPMVVG 286 (380)
T ss_pred HHHHHhCCEEEE-CccHHHH-HHH---H------hCCCEEEE
Confidence 456789997766 6777776 553 2 37999875
No 29
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=85.10 E-value=1.8 Score=34.71 Aligned_cols=54 Identities=26% Similarity=0.320 Sum_probs=29.4
Q ss_pred HHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccc-hhHHHHHHHHHHcCCC
Q 027323 109 AEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYY-NSLLSFIDKAVDEGFI 172 (225)
Q Consensus 109 ~~mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w-~~l~~~l~~~~~~g~i 172 (225)
..++..|| +||--||.||+.|+.. .++|.|++-..+.. ++-......+.+.|..
T Consensus 67 ~~~m~~aD-lvIs~aG~~Ti~E~l~---------~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~ 121 (167)
T PF04101_consen 67 AELMAAAD-LVISHAGAGTIAEALA---------LGKPAIVIPLPGAADNHQEENAKELAKKGAA 121 (167)
T ss_dssp HHHHHHHS-EEEECS-CHHHHHHHH---------CT--EEEE--TTT-T-CHHHHHHHHHHCCCC
T ss_pred HHHHHHcC-EEEeCCCccHHHHHHH---------cCCCeeccCCCCcchHHHHHHHHHHHHcCCc
Confidence 34568899 7778899999888763 47999887433212 1222223345555543
No 30
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=84.57 E-value=33 Score=31.58 Aligned_cols=82 Identities=15% Similarity=0.072 Sum_probs=46.9
Q ss_pred eEEecCCHHHHHHHHHHhcCeEEEec---CCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCC
Q 027323 97 EVKAVSGMHQRKAEMARQADAFIALP---GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIA 173 (225)
Q Consensus 97 ~~i~~~~m~~Rk~~mv~~sDa~Ivlp---GG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~ 173 (225)
++++.+++. ....+...||++++.| .+.|.- +.|+++ .++|||.-...+-+.++. +.+.+.|+
T Consensus 303 ~v~l~~~~~-el~~~y~~aDi~~v~~S~~e~~g~~--~lEAma------~G~PVI~g~~~~~~~e~~---~~~~~~g~-- 368 (425)
T PRK05749 303 DVLLGDTMG-ELGLLYAIADIAFVGGSLVKRGGHN--PLEPAA------FGVPVISGPHTFNFKEIF---ERLLQAGA-- 368 (425)
T ss_pred cEEEEecHH-HHHHHHHhCCEEEECCCcCCCCCCC--HHHHHH------hCCCEEECCCccCHHHHH---HHHHHCCC--
Confidence 455555554 3445678999876642 123432 567765 379998743212223333 22333333
Q ss_pred cccccceEEcCCHHHHHHHHHhhcC
Q 027323 174 PAARYIIVSAQTAHELICKLEEYVP 198 (225)
Q Consensus 174 ~~~~~~i~~~~d~ee~~~~l~~~~~ 198 (225)
++..+|++++.+.|.+...
T Consensus 369 ------~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 369 ------AIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred ------eEEECCHHHHHHHHHHHhc
Confidence 4557889998888887654
No 31
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=83.72 E-value=34 Score=31.11 Aligned_cols=133 Identities=17% Similarity=0.161 Sum_probs=75.9
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHH----HHHHHCCCeEEEcCCCcchHHHHHHHHHhcCC-cEEEE-ecCccccCCC
Q 027323 17 RFKRVCVFCGSSPGKSPSYQLAAIQLG----KQLVERNIDLVYGGGSIGLMGLVSQAVYDGGR-HVLGV-IPKTLMPREI 90 (225)
Q Consensus 17 ~~~~I~VfggS~~~~~~~~~~~A~~lG----~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG-~viGi-~P~~~~~~e~ 90 (225)
-.+.|+|+.|.....-+-..+.|.++. +.|.+.|+.++---.+ =-...+. .-+...- .+-|+ -|+. +.
T Consensus 160 ~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSR-RTp~~~~-s~l~~~l~s~~~i~w~~~----d~ 233 (329)
T COG3660 160 PRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSR-RTPDTVK-SILKNNLNSSPGIVWNNE----DT 233 (329)
T ss_pred CCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeec-CCcHHHH-HHHHhccccCceeEeCCC----CC
Confidence 345788877766553221133444444 4445567776655444 2333332 2223222 22233 2222 22
Q ss_pred CCCCCceEEecCCHHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCcc-chhHHHHHHHHHHc
Q 027323 91 TGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGY-YNSLLSFIDKAVDE 169 (225)
Q Consensus 91 ~~~~~~~~i~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~-w~~l~~~l~~~~~~ 169 (225)
..|+|- -|+..+|+||+---.+.-..|.. + .+||+.++-..++ -..+.-|++.++++
T Consensus 234 g~NPY~-------------~~La~Adyii~TaDSinM~sEAa---s------TgkPv~~~~~~~~~s~K~r~Fi~~L~eq 291 (329)
T COG3660 234 GYNPYI-------------DMLAAADYIISTADSINMCSEAA---S------TGKPVFILEPPNFNSLKFRIFIEQLVEQ 291 (329)
T ss_pred CCCchH-------------HHHhhcceEEEecchhhhhHHHh---c------cCCCeEEEecCCcchHHHHHHHHHHHHh
Confidence 344442 25678999999877777766654 2 4799999987777 67777888888887
Q ss_pred CCCCcccc
Q 027323 170 GFIAPAAR 177 (225)
Q Consensus 170 g~i~~~~~ 177 (225)
+..+.-..
T Consensus 292 ~~AR~f~~ 299 (329)
T COG3660 292 KIARPFEG 299 (329)
T ss_pred hhccccCc
Confidence 76665444
No 32
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=82.18 E-value=36 Score=31.43 Aligned_cols=75 Identities=19% Similarity=0.122 Sum_probs=40.2
Q ss_pred HHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHH-HHHHHcCCCCc-------c-cccceE
Q 027323 111 MARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFI-DKAVDEGFIAP-------A-ARYIIV 181 (225)
Q Consensus 111 mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l-~~~~~~g~i~~-------~-~~~~i~ 181 (225)
.+..||++|.-. |..|+ |++. .++|+|+...-..+. .++ +++++-.++.. . ..+++.
T Consensus 264 ~l~aADl~V~~S-Gt~tl-Ea~a---------~G~P~Vv~yk~~pl~---~~~~~~~~~~~~~~~~nil~~~~~~pel~q 329 (385)
T TIGR00215 264 AMFAADAALLAS-GTAAL-EAAL---------IKTPMVVGYRMKPLT---FLIARRLVKTDYISLPNILANRLLVPELLQ 329 (385)
T ss_pred HHHhCCEEeecC-CHHHH-HHHH---------cCCCEEEEEcCCHHH---HHHHHHHHcCCeeeccHHhcCCccchhhcC
Confidence 568899766555 66677 6642 479998864332222 222 22322222211 1 112333
Q ss_pred EcCCHHHHHHHHHhhcCC
Q 027323 182 SAQTAHELICKLEEYVPK 199 (225)
Q Consensus 182 ~~~d~ee~~~~l~~~~~~ 199 (225)
---+++.+.+.+.+.+..
T Consensus 330 ~~~~~~~l~~~~~~ll~~ 347 (385)
T TIGR00215 330 EECTPHPLAIALLLLLEN 347 (385)
T ss_pred CCCCHHHHHHHHHHHhcC
Confidence 344788888888877543
No 33
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=81.46 E-value=31 Score=30.69 Aligned_cols=104 Identities=17% Similarity=0.127 Sum_probs=52.9
Q ss_pred CCeEEEcCCCcchHHHHHHHHHhcCC-cEEEEecCccccCCCCCCCCceEEecCCHHHHHHHHHHhcCeEEEecCCCCcH
Q 027323 50 NIDLVYGGGSIGLMGLVSQAVYDGGR-HVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTL 128 (225)
Q Consensus 50 g~~lVtGGG~~GlM~a~a~gA~~~GG-~viGi~P~~~~~~e~~~~~~~~~i~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL 128 (225)
.+.||+||+. | .+.+.+...+... .++-.-++.. ..... ..+.+..-..+...-++..||++|. .||.+|+
T Consensus 189 ~~iLv~~g~~-~-~~~l~~~l~~~~~~~~i~~~~~~~-~~~~~----~~v~~~~~~~~~~~~~l~~ad~vI~-~~G~~t~ 260 (321)
T TIGR00661 189 DYILVYIGFE-Y-RYKILELLGKIANVKFVCYSYEVA-KNSYN----ENVEIRRITTDNFKELIKNAELVIT-HGGFSLI 260 (321)
T ss_pred CcEEEECCcC-C-HHHHHHHHHhCCCeEEEEeCCCCC-ccccC----CCEEEEECChHHHHHHHHhCCEEEE-CCChHHH
Confidence 6678998653 4 5666655434443 2221122211 11111 1222222111344556688996665 5678897
Q ss_pred HHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCC
Q 027323 129 EELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGF 171 (225)
Q Consensus 129 ~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~ 171 (225)
.|.. . +++|++++...+.++.... .+.+.+.|.
T Consensus 261 ~Ea~---~------~g~P~l~ip~~~~~eQ~~n-a~~l~~~g~ 293 (321)
T TIGR00661 261 SEAL---S------LGKPLIVIPDLGQFEQGNN-AVKLEDLGC 293 (321)
T ss_pred HHHH---H------cCCCEEEEcCCCcccHHHH-HHHHHHCCC
Confidence 7754 2 4899999876555543322 234555554
No 34
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=77.16 E-value=4.9 Score=36.27 Aligned_cols=45 Identities=22% Similarity=0.444 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHCCCeE-EEcCCCcchHHHHHHHHHhcCCcEEEEecC
Q 027323 38 AAIQLGKQLVERNIDL-VYGGGSIGLMGLVSQAVYDGGRHVLGVIPK 83 (225)
Q Consensus 38 ~A~~lG~~LA~~g~~l-VtGGG~~GlM~a~a~gA~~~GG~viGi~P~ 83 (225)
.|.++++.++..++.+ +.+||. |...+++.|....+...+||+|.
T Consensus 46 ~a~~~a~~a~~~~~D~via~GGD-GTv~evingl~~~~~~~LgilP~ 91 (301)
T COG1597 46 DAIEIAREAAVEGYDTVIAAGGD-GTVNEVANGLAGTDDPPLGILPG 91 (301)
T ss_pred cHHHHHHHHHhcCCCEEEEecCc-chHHHHHHHHhcCCCCceEEecC
Confidence 3567777777776654 466665 99999999999998888999995
No 35
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=76.99 E-value=19 Score=30.25 Aligned_cols=53 Identities=28% Similarity=0.254 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCeEEEecC--C----CCcHHHHHHHHHHHHhCCCCCceEEEecC--ccchhHHHHH
Q 027323 105 HQRKAEMARQADAFIALPG--G----YGTLEELLEVITWAQLGIHDKPVGLLNVD--GYYNSLLSFI 163 (225)
Q Consensus 105 ~~Rk~~mv~~sDa~IvlpG--G----~GTL~El~~~~~~~qlg~~~kPiill~~~--g~w~~l~~~l 163 (225)
.+=...++++||++|+.-= - .||.-|+-.+.++ +||++.+..+ .+...+...+
T Consensus 59 ~e~d~~~i~~aD~vla~ld~fr~~~DsGTa~E~GYa~Al------gKPv~~~~~d~~~~~~r~~~~~ 119 (172)
T COG3613 59 YEADIKLIDQADIVLANLDPFRPDPDSGTAFELGYAIAL------GKPVYAYRKDAANYASRLNAHL 119 (172)
T ss_pred HHHHHHHHhhcCEEEEecCCCCCCCCCcchHHHHHHHHc------CCceEEEeecccchhhHHHHhH
Confidence 3445556799999888643 3 7999999988864 7999988654 2344444444
No 36
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=76.05 E-value=10 Score=34.88 Aligned_cols=74 Identities=23% Similarity=0.218 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEEc
Q 027323 104 MHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 183 (225)
Q Consensus 104 m~~Rk~~mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~ 183 (225)
+.++-.-++..||++|.-|||. |+.|. ++ .++|+++++..+- ++..+ ...+.+.|+ -...
T Consensus 263 ~~~~~~~~~~~aDl~I~k~gg~-tl~EA---~a------~G~PvI~~~~~pg-qe~~N-~~~~~~~G~--------g~~~ 322 (391)
T PRK13608 263 YTKHMNEWMASSQLMITKPGGI-TISEG---LA------RCIPMIFLNPAPG-QELEN-ALYFEEKGF--------GKIA 322 (391)
T ss_pred ccchHHHHHHhhhEEEeCCchH-HHHHH---HH------hCCCEEECCCCCC-cchhH-HHHHHhCCc--------EEEe
Confidence 3345556779999998877764 65554 43 3799999864221 11111 011223332 2346
Q ss_pred CCHHHHHHHHHhhc
Q 027323 184 QTAHELICKLEEYV 197 (225)
Q Consensus 184 ~d~ee~~~~l~~~~ 197 (225)
+|++++.+.+.+..
T Consensus 323 ~~~~~l~~~i~~ll 336 (391)
T PRK13608 323 DTPEEAIKIVASLT 336 (391)
T ss_pred CCHHHHHHHHHHHh
Confidence 78888877777654
No 37
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=75.39 E-value=8.4 Score=31.42 Aligned_cols=44 Identities=16% Similarity=0.155 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCcEEEEe
Q 027323 37 LAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVI 81 (225)
Q Consensus 37 ~~A~~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi~ 81 (225)
.-|.-+.+.|+..|+.++++|.. --.+.+++.|.+....+|||.
T Consensus 27 ~gakvia~~l~d~GfeVi~~g~~-~tp~e~v~aA~~~dv~vIgvS 70 (143)
T COG2185 27 RGAKVIARALADAGFEVINLGLF-QTPEEAVRAAVEEDVDVIGVS 70 (143)
T ss_pred cchHHHHHHHHhCCceEEecCCc-CCHHHHHHHHHhcCCCEEEEE
Confidence 45677889999999999999986 677888899999999999993
No 38
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=72.99 E-value=43 Score=27.93 Aligned_cols=122 Identities=18% Similarity=0.269 Sum_probs=62.3
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe---EEEcCCCcchHHHHHHHHHhcCCcEE-EEecCccccCCCCCC
Q 027323 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNID---LVYGGGSIGLMGLVSQAVYDGGRHVL-GVIPKTLMPREITGD 93 (225)
Q Consensus 18 ~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~---lVtGGG~~GlM~a~a~gA~~~GG~vi-Gi~P~~~~~~e~~~~ 93 (225)
++.+-|-+|+-.-.+=.-.-.+.+.-+.|-++|++ |=.|=|..+.-... +++...+|.+| |+- .
T Consensus 3 ~~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~-~~~~k~~gl~id~y~--------f--- 70 (170)
T KOG3349|consen 3 LMTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDPI-DLIRKNGGLTIDGYD--------F--- 70 (170)
T ss_pred ceEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCHH-HhhcccCCeEEEEEe--------c---
Confidence 45667767765432211222345666778888875 33666642333333 33334444433 320 0
Q ss_pred CCceEEecCCHHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCcc-chhHHHHHHHHHHcCCC
Q 027323 94 TVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGY-YNSLLSFIDKAVDEGFI 172 (225)
Q Consensus 94 ~~~~~i~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~-w~~l~~~l~~~~~~g~i 172 (225)
.+.|. .. ++.|| +|+=-+|.||-- +++. .+||.+++-.+.. =++=.++.+.+.++|++
T Consensus 71 -------~psl~---e~-I~~Ad-lVIsHAGaGS~l---etL~------l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL 129 (170)
T KOG3349|consen 71 -------SPSLT---ED-IRSAD-LVISHAGAGSCL---ETLR------LGKPLIVVVNDSLMDNHQLELAKQLAEEGYL 129 (170)
T ss_pred -------CccHH---HH-Hhhcc-EEEecCCcchHH---HHHH------cCCCEEEEeChHhhhhHHHHHHHHHHhcCcE
Confidence 11221 11 34566 556678999944 4442 4799887633322 23344445667777765
No 39
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=69.99 E-value=42 Score=30.27 Aligned_cols=102 Identities=24% Similarity=0.260 Sum_probs=52.7
Q ss_pred HCCCeEEEcCCC--cchHHHHHHHHHhcCC-cEEEEecCccccCCCCCCCCceEEecC--CHH-HHHHHHHHhcCeEEEe
Q 027323 48 ERNIDLVYGGGS--IGLMGLVSQAVYDGGR-HVLGVIPKTLMPREITGDTVGEVKAVS--GMH-QRKAEMARQADAFIAL 121 (225)
Q Consensus 48 ~~g~~lVtGGG~--~GlM~a~a~gA~~~GG-~viGi~P~~~~~~e~~~~~~~~~i~~~--~m~-~Rk~~mv~~sDa~Ivl 121 (225)
++|..+|-||+. .|-..-++.+|..+|. .|.=..|...... -.....++++.+ +.. ..+..+.+..|++++
T Consensus 31 ~~G~vliigG~~~y~GA~~laa~aAl~~GaglV~v~~~~~~~~~--~~s~~Pe~mv~~~~~~~~~~~~~~~~~~~avvi- 107 (284)
T COG0063 31 DYGRVLIIGGSRGYTGAPVLAALAALRAGAGLVSLASPPEAASA--LKSYLPELMVIEVEGKKLLEERELVERADAVVI- 107 (284)
T ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHhCCCeEEEecchhhhhh--HhhcCcceeEeecccchhhHHhhhhccCCEEEE-
Confidence 368888888763 4666667788888764 4433344321100 011112333322 222 222356678886554
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCCCceEEEecCc
Q 027323 122 PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 154 (225)
Q Consensus 122 pGG~GTL~El~~~~~~~qlg~~~kPiill~~~g 154 (225)
+-|.|.-+|..+++... +....+|+++ +-++
T Consensus 108 GpGlG~~~~~~~~~~~~-l~~~~~p~Vi-DADa 138 (284)
T COG0063 108 GPGLGRDAEGQEALKEL-LSSDLKPLVL-DADA 138 (284)
T ss_pred CCCCCCCHHHHHHHHHH-HhccCCCEEE-eCcH
Confidence 45677777766655322 2211189877 4443
No 40
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=69.60 E-value=35 Score=30.35 Aligned_cols=81 Identities=21% Similarity=0.204 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHH-HHHHHHcCCCCcccccce
Q 027323 102 SGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSF-IDKAVDEGFIAPAARYII 180 (225)
Q Consensus 102 ~~m~~Rk~~mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~-l~~~~~~g~i~~~~~~~i 180 (225)
.++.+.-.-++..||++|. ++|.+|+-|. +. .++|++.....+--..-..+ .+.+.+.|. ..+
T Consensus 240 ~g~~~~~~~~~~~~d~~i~-~~g~~~~~Ea---~~------~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~------g~~ 303 (357)
T PRK00726 240 VPFIDDMAAAYAAADLVIC-RAGASTVAEL---AA------AGLPAILVPLPHAADDHQTANARALVDAGA------ALL 303 (357)
T ss_pred eehHhhHHHHHHhCCEEEE-CCCHHHHHHH---HH------hCCCEEEecCCCCCcCcHHHHHHHHHHCCC------EEE
Confidence 3443444566789999885 5556675554 43 37999987542211111111 122333331 223
Q ss_pred EEcCC--HHHHHHHHHhhcC
Q 027323 181 VSAQT--AHELICKLEEYVP 198 (225)
Q Consensus 181 ~~~~d--~ee~~~~l~~~~~ 198 (225)
.-.+| ++++.+.|++.+.
T Consensus 304 ~~~~~~~~~~l~~~i~~ll~ 323 (357)
T PRK00726 304 IPQSDLTPEKLAEKLLELLS 323 (357)
T ss_pred EEcccCCHHHHHHHHHHHHc
Confidence 33445 8999998887654
No 41
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=68.79 E-value=31 Score=30.17 Aligned_cols=44 Identities=23% Similarity=0.293 Sum_probs=24.0
Q ss_pred HHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCc
Q 027323 107 RKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 154 (225)
Q Consensus 107 Rk~~mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g 154 (225)
+-..+...+|++++ .+|.++-+.+.++... +..+.+|+++ +.+|
T Consensus 85 ~~~~~~~~~davvi-g~Gl~~~~~~~~l~~~--~~~~~~pvVl-Da~g 128 (272)
T TIGR00196 85 EDEELLERYDVVVI-GPGLGQDPSFKKAVEE--VLELDKPVVL-DADA 128 (272)
T ss_pred HHHhhhccCCEEEE-cCCCCCCHHHHHHHHH--HHhcCCCEEE-EhHH
Confidence 33344566776555 6668886654433322 2234688654 6543
No 42
>PRK11914 diacylglycerol kinase; Reviewed
Probab=66.36 E-value=79 Score=28.03 Aligned_cols=17 Identities=29% Similarity=0.677 Sum_probs=8.6
Q ss_pred EEecCCCCcHHHHHHHH
Q 027323 119 IALPGGYGTLEELLEVI 135 (225)
Q Consensus 119 IvlpGG~GTL~El~~~~ 135 (225)
|++-||=||++|+...+
T Consensus 68 vvv~GGDGTi~evv~~l 84 (306)
T PRK11914 68 LVVVGGDGVISNALQVL 84 (306)
T ss_pred EEEECCchHHHHHhHHh
Confidence 44455555555554433
No 43
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=66.35 E-value=1e+02 Score=27.95 Aligned_cols=77 Identities=17% Similarity=0.281 Sum_probs=54.7
Q ss_pred HHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCccccc--c-----eEEc
Q 027323 111 MARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARY--I-----IVSA 183 (225)
Q Consensus 111 mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~--~-----i~~~ 183 (225)
++..||+|||-+-.+-=+.|. ++ .++||.++...+--..+..|++.|.++|.+..-... . ..-.
T Consensus 225 ~La~ad~i~VT~DSvSMvsEA---~~------tG~pV~v~~l~~~~~r~~r~~~~L~~~g~~r~~~~~~~~~~~~~~~pl 295 (311)
T PF06258_consen 225 FLAAADAIVVTEDSVSMVSEA---AA------TGKPVYVLPLPGRSGRFRRFHQSLEERGAVRPFTGWRDLEQWTPYEPL 295 (311)
T ss_pred HHHhCCEEEEcCccHHHHHHH---HH------cCCCEEEecCCCcchHHHHHHHHHHHCCCEEECCCcccccccccCCCc
Confidence 568899999987766554444 43 479999998776556788888999999998765443 1 3345
Q ss_pred CCHHHHHHHHHhh
Q 027323 184 QTAHELICKLEEY 196 (225)
Q Consensus 184 ~d~ee~~~~l~~~ 196 (225)
|+.+.+.+.|.+.
T Consensus 296 ~et~r~A~~i~~r 308 (311)
T PF06258_consen 296 DETDRVAAEIRER 308 (311)
T ss_pred cHHHHHHHHHHHH
Confidence 5666666666654
No 44
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=66.32 E-value=41 Score=31.57 Aligned_cols=91 Identities=24% Similarity=0.276 Sum_probs=52.1
Q ss_pred HHHCCCeEEEcCCCcc----hHHHHHHHHHhcCCcEEEEecCccccCCCCCCCCceEEecCCHHHHHHHHHHhcCeEEEe
Q 027323 46 LVERNIDLVYGGGSIG----LMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIAL 121 (225)
Q Consensus 46 LA~~g~~lVtGGG~~G----lM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~i~~~~m~~Rk~~mv~~sDa~Ivl 121 (225)
.+.+....++=|+ .+ +-+.+.+.+.+.+.++|--..... . .. .+-....++..... ...++..||+ +|-
T Consensus 234 ~~d~~~vyvslGt-~~~~~~l~~~~~~a~~~l~~~vi~~~~~~~-~-~~-~~~p~n~~v~~~~p--~~~~l~~ad~-vI~ 306 (406)
T COG1819 234 PADRPIVYVSLGT-VGNAVELLAIVLEALADLDVRVIVSLGGAR-D-TL-VNVPDNVIVADYVP--QLELLPRADA-VIH 306 (406)
T ss_pred cCCCCeEEEEcCC-cccHHHHHHHHHHHHhcCCcEEEEeccccc-c-cc-ccCCCceEEecCCC--HHHHhhhcCE-EEe
Confidence 3345555555444 36 445667777778888776654311 1 00 11111233333332 2337788995 457
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCCCceEEEec
Q 027323 122 PGGYGTLEELLEVITWAQLGIHDKPVGLLNV 152 (225)
Q Consensus 122 pGG~GTL~El~~~~~~~qlg~~~kPiill~~ 152 (225)
.||.||..|.. ..++|++++-.
T Consensus 307 hGG~gtt~eaL---------~~gvP~vv~P~ 328 (406)
T COG1819 307 HGGAGTTSEAL---------YAGVPLVVIPD 328 (406)
T ss_pred cCCcchHHHHH---------HcCCCEEEecC
Confidence 89999987765 25899999743
No 45
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=66.00 E-value=11 Score=30.51 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=26.6
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 027323 17 RFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYG 56 (225)
Q Consensus 17 ~~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtG 56 (225)
+-++|+|+|-|..+..+.| .+.+.|-++||.++==
T Consensus 15 ~~K~IAvVG~S~~P~r~sy-----~V~kyL~~~GY~ViPV 49 (140)
T COG1832 15 SAKTIAVVGASDKPDRPSY-----RVAKYLQQKGYRVIPV 49 (140)
T ss_pred hCceEEEEecCCCCCccHH-----HHHHHHHHCCCEEEee
Confidence 3468999987776654554 6888999999999843
No 46
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=65.90 E-value=17 Score=33.74 Aligned_cols=142 Identities=22% Similarity=0.221 Sum_probs=76.5
Q ss_pred CCCeEEEcCCCcchHHHHHHHHHhcCCcEEEEecCccccCCCCCCCCceEEecCCHHHHHHHHHHhcCeEEEecCCCCcH
Q 027323 49 RNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTL 128 (225)
Q Consensus 49 ~g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~i~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL 128 (225)
-.+.+|+|.| ||=-.+.+=|+..|.+|++|.-+.. ..+.....-.+.++...-.+....+.+..|++|..-+ .=|+
T Consensus 167 G~~V~I~G~G--GlGh~avQ~Aka~ga~Via~~~~~~-K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~ 242 (339)
T COG1064 167 GKWVAVVGAG--GLGHMAVQYAKAMGAEVIAITRSEE-KLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATL 242 (339)
T ss_pred CCEEEEECCc--HHHHHHHHHHHHcCCeEEEEeCChH-HHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhH
Confidence 3567889997 5555567778888999999953221 1111111112233322122223333334999999888 7787
Q ss_pred HHHHHHHHHH----HhCCCC-CceE-------EEec-------CccchhHHHHHHHHHHcCCCCcccccceEEcCCHHHH
Q 027323 129 EELLEVITWA----QLGIHD-KPVG-------LLNV-------DGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHEL 189 (225)
Q Consensus 129 ~El~~~~~~~----qlg~~~-kPii-------ll~~-------~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~ 189 (225)
+.....+... +.|... .|+. +++. .|=-.++.++|+ +..+|-|.+...+ .+-.++..|+
T Consensus 243 ~~~l~~l~~~G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~~~d~~e~l~-f~~~g~Ikp~i~e-~~~l~~in~A 320 (339)
T COG1064 243 EPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGTRADLEEALD-FAAEGKIKPEILE-TIPLDEINEA 320 (339)
T ss_pred HHHHHHHhcCCEEEEECCCCCcccCCCCHHHhhhcCeEEEEEecCCHHHHHHHHH-HHHhCCceeeEEe-eECHHHHHHH
Confidence 7777666321 123331 1211 1110 122334555555 5667778766553 3446668888
Q ss_pred HHHHHhh
Q 027323 190 ICKLEEY 196 (225)
Q Consensus 190 ~~~l~~~ 196 (225)
++.|.+.
T Consensus 321 ~~~m~~g 327 (339)
T COG1064 321 YERMEKG 327 (339)
T ss_pred HHHHHcC
Confidence 8888764
No 47
>PRK13337 putative lipid kinase; Reviewed
Probab=64.97 E-value=17 Score=32.37 Aligned_cols=43 Identities=26% Similarity=0.444 Sum_probs=29.5
Q ss_pred HHHHHHHHHCCC-eEEEcCCCcchHHHHHHHHHhcCC-cEEEEecC
Q 027323 40 IQLGKQLVERNI-DLVYGGGSIGLMGLVSQAVYDGGR-HVLGVIPK 83 (225)
Q Consensus 40 ~~lG~~LA~~g~-~lVtGGG~~GlM~a~a~gA~~~GG-~viGi~P~ 83 (225)
.++.+.++++++ .||..||. |-..++..|....+- ..+||+|.
T Consensus 47 ~~~a~~~~~~~~d~vvv~GGD-GTl~~vv~gl~~~~~~~~lgiiP~ 91 (304)
T PRK13337 47 TLAAERAVERKFDLVIAAGGD-GTLNEVVNGIAEKENRPKLGIIPV 91 (304)
T ss_pred HHHHHHHHhcCCCEEEEEcCC-CHHHHHHHHHhhCCCCCcEEEECC
Confidence 445555666654 45555665 999999998876543 47999995
No 48
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=64.87 E-value=9.4 Score=32.58 Aligned_cols=34 Identities=24% Similarity=0.174 Sum_probs=27.7
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCC
Q 027323 17 RFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERN 50 (225)
Q Consensus 17 ~~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g 50 (225)
++++|+|||||=++.+.-+...|+++.+.+...-
T Consensus 1 ~~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~ 34 (197)
T COG1057 1 KMKKIALFGGSFDPPHYGHLLIAEEALDQLGLDK 34 (197)
T ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHhcCCCe
Confidence 4679999999999888888888888887775544
No 49
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=64.75 E-value=32 Score=27.52 Aligned_cols=85 Identities=20% Similarity=0.307 Sum_probs=42.0
Q ss_pred CeEEEcCCCcchHHHHHHHHHhcCCcEEEEecCccccCCCCCCCCceEEecCCHHHHHHHHHH--hcCeEEEecCCCCcH
Q 027323 51 IDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMAR--QADAFIALPGGYGTL 128 (225)
Q Consensus 51 ~~lVtGGG~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~i~~~~m~~Rk~~mv~--~sDa~IvlpGG~GTL 128 (225)
..||+=.| ++..++.+.+.+.| +|+. ..... .|.. ++ ++.+=...+.+ ..+++++.--|++--
T Consensus 4 valisQSG--~~~~~~~~~~~~~g---~g~s--~~vs~---Gn~~-dv----~~~d~l~~~~~D~~t~~I~ly~E~~~d~ 68 (138)
T PF13607_consen 4 VALISQSG--ALGTAILDWAQDRG---IGFS--YVVSV---GNEA-DV----DFADLLEYLAEDPDTRVIVLYLEGIGDG 68 (138)
T ss_dssp EEEEES-H--HHHHHHHHHHHHTT----EES--EEEE----TT-S-SS-----HHHHHHHHCT-SS--EEEEEES--S-H
T ss_pred EEEEECCH--HHHHHHHHHHHHcC---CCee--EEEEe---Cccc-cC----CHHHHHHHHhcCCCCCEEEEEccCCCCH
Confidence 45565543 67777888888876 4441 11110 1111 11 33333333333 356778878889998
Q ss_pred HHHHHHHHHHHhCCCCCceEEEecC
Q 027323 129 EELLEVITWAQLGIHDKPVGLLNVD 153 (225)
Q Consensus 129 ~El~~~~~~~qlg~~~kPiill~~~ 153 (225)
.+++++.. ..... ||||++..+
T Consensus 69 ~~f~~~~~--~a~~~-KPVv~lk~G 90 (138)
T PF13607_consen 69 RRFLEAAR--RAARR-KPVVVLKAG 90 (138)
T ss_dssp HHHHHHHH--HHCCC-S-EEEEE--
T ss_pred HHHHHHHH--HHhcC-CCEEEEeCC
Confidence 99988774 33334 999999764
No 50
>PRK08105 flavodoxin; Provisional
Probab=64.66 E-value=8.8 Score=30.89 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=26.5
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027323 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (225)
Q Consensus 18 ~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lV 54 (225)
|++|.|+.||..++.+ +.|++|++.|.+.|+.+.
T Consensus 1 m~~i~I~YgS~tGnte---~~A~~l~~~l~~~g~~~~ 34 (149)
T PRK08105 1 MAKVGIFVGTVYGNAL---LVAEEAEAILTAQGHEVT 34 (149)
T ss_pred CCeEEEEEEcCchHHH---HHHHHHHHHHHhCCCceE
Confidence 4578998889888543 468899999988887754
No 51
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=63.63 E-value=4.8 Score=41.79 Aligned_cols=45 Identities=31% Similarity=0.516 Sum_probs=36.0
Q ss_pred HHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhc-----------CCcEEEEecCcccc
Q 027323 41 QLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDG-----------GRHVLGVIPKTLMP 87 (225)
Q Consensus 41 ~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~-----------GG~viGi~P~~~~~ 87 (225)
+|+|.|.-+-+.||.||| |.=+++.-|+++| ||.+||-.-+.++.
T Consensus 830 RLAR~LtGnaIgLVLGGG--GARG~ahiGvl~ALeE~GIPvD~VGGTSIGafiGaLYA 885 (1158)
T KOG2968|consen 830 RLARILTGNAIGLVLGGG--GARGAAHIGVLQALEEAGIPVDMVGGTSIGAFIGALYA 885 (1158)
T ss_pred HHHHHHhCCeEEEEecCc--chhhhhHHHHHHHHHHcCCCeeeeccccHHHhhhhhhh
Confidence 699999999999999996 8899999888864 77888764444443
No 52
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=63.45 E-value=44 Score=28.46 Aligned_cols=70 Identities=19% Similarity=0.351 Sum_probs=43.6
Q ss_pred CCCeEEEcCCCcchHHHHHHHHHhcCCcEEEEecCccccCCCCCCCCceEEe--cCCHHHHHHHHH---------HhcCe
Q 027323 49 RNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKA--VSGMHQRKAEMA---------RQADA 117 (225)
Q Consensus 49 ~g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~i~--~~~m~~Rk~~mv---------~~sDa 117 (225)
.|-.||||| + |..+.++-.++++++..++-+- +...|.+. ..+++ .+++-+..+..+ +.-|+
T Consensus 3 agrVivYGG-k-GALGSacv~~FkannywV~siD--l~eNe~Ad---~sI~V~~~~swtEQe~~v~~~vg~sL~gekvDa 75 (236)
T KOG4022|consen 3 AGRVIVYGG-K-GALGSACVEFFKANNYWVLSID--LSENEQAD---SSILVDGNKSWTEQEQSVLEQVGSSLQGEKVDA 75 (236)
T ss_pred CceEEEEcC-c-chHhHHHHHHHHhcCeEEEEEe--eccccccc---ceEEecCCcchhHHHHHHHHHHHHhhcccccce
Confidence 577899998 5 9999999999999987776541 11112111 11222 234544444333 34699
Q ss_pred EEEecCCC
Q 027323 118 FIALPGGY 125 (225)
Q Consensus 118 ~IvlpGG~ 125 (225)
++.+.||+
T Consensus 76 v~CVAGGW 83 (236)
T KOG4022|consen 76 VFCVAGGW 83 (236)
T ss_pred EEEeeccc
Confidence 99988875
No 53
>PRK13055 putative lipid kinase; Reviewed
Probab=62.40 E-value=19 Score=32.77 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=29.3
Q ss_pred HHHHHHHHHCCC-eEEEcCCCcchHHHHHHHHHhcC-CcEEEEecC
Q 027323 40 IQLGKQLVERNI-DLVYGGGSIGLMGLVSQAVYDGG-RHVLGVIPK 83 (225)
Q Consensus 40 ~~lG~~LA~~g~-~lVtGGG~~GlM~a~a~gA~~~G-G~viGi~P~ 83 (225)
.++.+.+++.++ .||..||. |-+.+++.+....+ ...+||+|.
T Consensus 49 ~~~~~~~~~~~~d~vvv~GGD-GTl~evvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 49 KNEAKRAAEAGFDLIIAAGGD-GTINEVVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred HHHHHHHhhcCCCEEEEECCC-CHHHHHHHHHhhcCCCCcEEEECC
Confidence 445555555554 44455665 99999999988654 356999994
No 54
>PRK09004 FMN-binding protein MioC; Provisional
Probab=61.60 E-value=10 Score=30.34 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=26.0
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027323 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (225)
Q Consensus 18 ~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lV 54 (225)
|++|.|+.||..++.+ +.|++|.+.+.+.|+.+.
T Consensus 1 M~~i~I~ygS~tGnae---~~A~~l~~~~~~~g~~~~ 34 (146)
T PRK09004 1 MADITLISGSTLGGAE---YVADHLAEKLEEAGFSTE 34 (146)
T ss_pred CCeEEEEEEcCchHHH---HHHHHHHHHHHHcCCceE
Confidence 5578998899888644 467889998888887654
No 55
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=61.57 E-value=22 Score=32.36 Aligned_cols=49 Identities=24% Similarity=0.311 Sum_probs=34.2
Q ss_pred hcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEec-----CccchhHHHHHHH
Q 027323 114 QADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV-----DGYYNSLLSFIDK 165 (225)
Q Consensus 114 ~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~-----~g~w~~l~~~l~~ 165 (225)
..|+|||.-| .-||+|...++.+.. . .+||||+.+. ....|...++...
T Consensus 78 ~~dGiVVtHG-TDTmeeTA~~L~~~l-~-~~kPVVlTGA~rp~~~~~sDg~~NL~~A 131 (323)
T cd00411 78 SYDGFVITHG-TDTMEETAYFLSLTL-E-NDKPVVLTGSMRPSTELSADGPLNLYNA 131 (323)
T ss_pred hcCcEEEEcC-cccHHHHHHHHHHHh-c-CCCCEEEECCCCCCCCcCcchHHHHHHH
Confidence 4789888875 899999999887643 2 3899999854 1234555555543
No 56
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=60.14 E-value=23 Score=32.56 Aligned_cols=50 Identities=16% Similarity=0.222 Sum_probs=35.8
Q ss_pred HhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecC-----ccchhHHHHHHH
Q 027323 113 RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD-----GYYNSLLSFIDK 165 (225)
Q Consensus 113 ~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~-----g~w~~l~~~l~~ 165 (225)
+..|+|||+-| .-||+|-..++.+.-- .+||||+.+.- -..|...+++..
T Consensus 76 ~~~dG~VVtHG-TDTme~TA~~Ls~~l~--~~kPVVlTGsmrp~~~~~sDg~~NL~~A 130 (336)
T TIGR00519 76 DDYDGFVITHG-TDTMAYTAAALSFMLE--TPKPVVFTGAQRSSDRPSSDAALNLLCA 130 (336)
T ss_pred hcCCeEEEccC-CchHHHHHHHHHHHcC--CCCCEEEECCCCCCCCcCcchHHHHHHH
Confidence 45899999885 7899999988876432 38999998641 245566666543
No 57
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=59.82 E-value=16 Score=28.16 Aligned_cols=42 Identities=29% Similarity=0.464 Sum_probs=27.7
Q ss_pred HHHHHHHHCCC--eEEEcCCCcchHHHHHHHHHhcCC---cEEEEecC
Q 027323 41 QLGKQLVERNI--DLVYGGGSIGLMGLVSQAVYDGGR---HVLGVIPK 83 (225)
Q Consensus 41 ~lG~~LA~~g~--~lVtGGG~~GlM~a~a~gA~~~GG---~viGi~P~ 83 (225)
++.+....... .||..||. |-.-.+..+....+. ..+||+|.
T Consensus 44 ~~~~~~~~~~~~~~ivv~GGD-GTl~~vv~~l~~~~~~~~~~l~iiP~ 90 (130)
T PF00781_consen 44 ALARILALDDYPDVIVVVGGD-GTLNEVVNGLMGSDREDKPPLGIIPA 90 (130)
T ss_dssp HHHHHHHHTTS-SEEEEEESH-HHHHHHHHHHCTSTSSS--EEEEEE-
T ss_pred HHHHHHhhccCccEEEEEcCc-cHHHHHHHHHhhcCCCccceEEEecC
Confidence 44444444443 66666666 888888888887765 37999985
No 58
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=58.25 E-value=13 Score=28.84 Aligned_cols=31 Identities=26% Similarity=0.461 Sum_probs=21.7
Q ss_pred EEEecCCCCcHHHHHHHHHHHHhCC--CCCceEEE
Q 027323 118 FIALPGGYGTLEELLEVITWAQLGI--HDKPVGLL 150 (225)
Q Consensus 118 ~IvlpGG~GTL~El~~~~~~~qlg~--~~kPiill 150 (225)
+|+.-||=||++|+...+. .... ...|+.++
T Consensus 52 ~vvv~GGDGTi~~vvn~l~--~~~~~~~~~plgii 84 (124)
T smart00046 52 RVLVCGGDGTVGWVLNALD--KRELPLPEPPVAVL 84 (124)
T ss_pred EEEEEccccHHHHHHHHHH--hcccccCCCcEEEe
Confidence 7788999999999987762 2221 11577776
No 59
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=56.76 E-value=1.4e+02 Score=26.31 Aligned_cols=69 Identities=17% Similarity=0.198 Sum_probs=40.2
Q ss_pred HHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEEcCC
Q 027323 106 QRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT 185 (225)
Q Consensus 106 ~Rk~~mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d 185 (225)
..-..+...||++|.=+| |..+|.+ ..++|+++++..+-+.. .++.|. .+...+|
T Consensus 269 ~~~~~l~~~ad~~v~~Sg--gi~~Ea~---------~~g~PvI~~~~~~~~~~-------~~~~g~-------~~~~~~~ 323 (363)
T cd03786 269 LYFLLLLKNADLVLTDSG--GIQEEAS---------FLGVPVLNLRDRTERPE-------TVESGT-------NVLVGTD 323 (363)
T ss_pred HHHHHHHHcCcEEEEcCc--cHHhhhh---------hcCCCEEeeCCCCccch-------hhheee-------EEecCCC
Confidence 444556778998885555 5444443 14799999864322221 122221 1233357
Q ss_pred HHHHHHHHHhhcCC
Q 027323 186 AHELICKLEEYVPK 199 (225)
Q Consensus 186 ~ee~~~~l~~~~~~ 199 (225)
++++.+.+.+....
T Consensus 324 ~~~i~~~i~~ll~~ 337 (363)
T cd03786 324 PEAILAAIEKLLSD 337 (363)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999887643
No 60
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=55.73 E-value=82 Score=27.95 Aligned_cols=42 Identities=24% Similarity=0.430 Sum_probs=28.7
Q ss_pred HHHHHHHHH-----hcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCce
Q 027323 105 HQRKAEMAR-----QADAFIALPGGYGTLEELLEVITWAQLGIHDKPV 147 (225)
Q Consensus 105 ~~Rk~~mv~-----~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPi 147 (225)
.+|-+-|.+ ..|+++..-||.|+. ++..-+.|..+..++|++
T Consensus 48 ~~Ra~dL~~a~~d~~i~aI~~~rGG~ga~-rlL~~ld~~~~~~~pK~~ 94 (282)
T cd07025 48 EERAADLNAAFADPEIKAIWCARGGYGAN-RLLPYLDYDLIRANPKIF 94 (282)
T ss_pred HHHHHHHHHHhhCCCCCEEEEcCCcCCHH-HhhhhCCHHHHhhCCeEE
Confidence 555555443 468999999999995 466667777766555553
No 61
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=54.13 E-value=32 Score=30.51 Aligned_cols=38 Identities=13% Similarity=0.158 Sum_probs=28.9
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 027323 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVY 55 (225)
Q Consensus 18 ~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVt 55 (225)
+++|+|.+|......+.=...++.+.+.|.+.||.++.
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~ 40 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVG 40 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEE
Confidence 44788877666655565667899999999999998653
No 62
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=53.56 E-value=78 Score=28.44 Aligned_cols=62 Identities=26% Similarity=0.341 Sum_probs=35.3
Q ss_pred hcCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe------------------------------EEEcCCCcchHH
Q 027323 15 KSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNID------------------------------LVYGGGSIGLMG 64 (225)
Q Consensus 15 ~~~~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~------------------------------lVtGGG~~GlM~ 64 (225)
++++++|+|+.- .. .+...+.+.++.++|.++|+. +|+-||. |-|-
T Consensus 2 ~~~~~~v~iv~~--~~-~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGD-Gt~l 77 (291)
T PRK02155 2 KSQFKTVALIGR--YQ-TPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGD-GTML 77 (291)
T ss_pred CCcCCEEEEEec--CC-CHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCc-HHHH
Confidence 345677888832 22 233445566666666544332 3444555 7776
Q ss_pred HHHHHHHhcCCcEEEE
Q 027323 65 LVSQAVYDGGRHVLGV 80 (225)
Q Consensus 65 a~a~gA~~~GG~viGi 80 (225)
-+++.....+-.++||
T Consensus 78 ~~~~~~~~~~~pilGI 93 (291)
T PRK02155 78 GIGRQLAPYGVPLIGI 93 (291)
T ss_pred HHHHHhcCCCCCEEEE
Confidence 6666665556677777
No 63
>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes L18 from bacteria and L5 from eukaryotes. The ribosomal 5S RNA is the only known rRNA species to bind a ribosomal protein before its assembly into the ribosomal subunits []. In eukaryotes, the 5S rRNA molecule binds one protein species, a 34kDa protein which has been implicated in the intracellular transport of 5 S rRNA, while in bacteria it binds two or three different protein species []. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_M 4A1C_M 4A1A_M 4A17_M 3IZR_Q 3O58_E 1S1I_E 3IZS_Q 3O5H_E 1KQS_M ....
Probab=53.49 E-value=49 Score=25.76 Aligned_cols=41 Identities=24% Similarity=0.419 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHH----CCC-eEEEcCC---CcchHHHHHHHHHhcCCc
Q 027323 36 QLAAIQLGKQLVE----RNI-DLVYGGG---SIGLMGLVSQAVYDGGRH 76 (225)
Q Consensus 36 ~~~A~~lG~~LA~----~g~-~lVtGGG---~~GlM~a~a~gA~~~GG~ 76 (225)
.+.|+.+|+.||+ .|+ .++++=+ +.|-+.|+++++.++|-.
T Consensus 70 ~~aa~~vG~lla~ra~~~gi~~v~fdr~~~~y~grv~a~~~~~re~Gl~ 118 (119)
T PF00861_consen 70 VEAAYLVGELLAKRALEKGIAKVVFDRGGYKYHGRVKALADGAREGGLE 118 (119)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSEEEECTSTSSSSSHHHHHHHHHHHTTCB
T ss_pred EehHHHHHHHHHHHHHHcCCcEEEEcCCCCcccHHHHHHHHHHHHcCCC
Confidence 3678888888886 676 4555432 368999999999998843
No 64
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=53.20 E-value=90 Score=28.31 Aligned_cols=49 Identities=18% Similarity=0.392 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCeEEEecC---CCCcHHHHHHHHHHHHhCCCCCceEEEecCccch
Q 027323 106 QRKAEMARQADAFIALPG---GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYN 157 (225)
Q Consensus 106 ~Rk~~mv~~sDa~IvlpG---G~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~ 157 (225)
++-..+...=+|+|+=|| --+++.++..++.+.. ..++|+++ +.+|.|-
T Consensus 93 ~~i~k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~--~~dvP~VI-DaDGL~L 144 (306)
T KOG3974|consen 93 DIIEKLLQRLHAVVIGPGLGRDPAILKEIAKILEYLR--GKDVPLVI-DADGLWL 144 (306)
T ss_pred hHHHHHHhheeEEEECCCCCCCHHHHHHHHHHHHHHh--cCCCcEEE-cCCceEe
Confidence 444557778888888776 2466777777765432 24689876 7788874
No 65
>PRK11914 diacylglycerol kinase; Reviewed
Probab=52.95 E-value=30 Score=30.70 Aligned_cols=44 Identities=27% Similarity=0.371 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHCCC-eEEEcCCCcchHHHHHHHHHhcCCcEEEEecC
Q 027323 38 AAIQLGKQLVERNI-DLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPK 83 (225)
Q Consensus 38 ~A~~lG~~LA~~g~-~lVtGGG~~GlM~a~a~gA~~~GG~viGi~P~ 83 (225)
.|.++.+.+++.++ .||..||. |-..+++.+.... +..+||+|.
T Consensus 52 ~~~~~a~~~~~~~~d~vvv~GGD-GTi~evv~~l~~~-~~~lgiiP~ 96 (306)
T PRK11914 52 DARHLVAAALAKGTDALVVVGGD-GVISNALQVLAGT-DIPLGIIPA 96 (306)
T ss_pred HHHHHHHHHHhcCCCEEEEECCc-hHHHHHhHHhccC-CCcEEEEeC
Confidence 35667776667665 35555665 9999998887643 467999994
No 66
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=52.44 E-value=44 Score=30.49 Aligned_cols=29 Identities=31% Similarity=0.338 Sum_probs=20.4
Q ss_pred CCeEEEcCCCcchHHHHHHHHHhcCCcEEEE
Q 027323 50 NIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (225)
Q Consensus 50 g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi 80 (225)
+..+|.|.|+.|+|- ...|...|...|=+
T Consensus 170 ~~V~V~GaGpIGLla--~~~a~~~Ga~~Viv 198 (350)
T COG1063 170 GTVVVVGAGPIGLLA--IALAKLLGASVVIV 198 (350)
T ss_pred CEEEEECCCHHHHHH--HHHHHHcCCceEEE
Confidence 368999999999998 44455666444333
No 67
>PRK05723 flavodoxin; Provisional
Probab=51.89 E-value=18 Score=29.21 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=25.9
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027323 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (225)
Q Consensus 19 ~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lV 54 (225)
++|+|+.||..++.+ +.|++|.+.|.+.|+.+.
T Consensus 1 ~~i~I~ygS~tG~ae---~~A~~la~~l~~~g~~~~ 33 (151)
T PRK05723 1 MKVAILSGSVYGTAE---EVARHAESLLKAAGFEAW 33 (151)
T ss_pred CeEEEEEEcCchHHH---HHHHHHHHHHHHCCCcee
Confidence 468888899888644 467899999988888864
No 68
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=51.23 E-value=28 Score=29.39 Aligned_cols=81 Identities=15% Similarity=0.087 Sum_probs=52.5
Q ss_pred hcCeEEEecCCCCcHHHHHHHHHHH-------HhCCCCCceEEEecCccchh--HHHHHHHHHHcCC-CCcccccceEEc
Q 027323 114 QADAFIALPGGYGTLEELLEVITWA-------QLGIHDKPVGLLNVDGYYNS--LLSFIDKAVDEGF-IAPAARYIIVSA 183 (225)
Q Consensus 114 ~sDa~IvlpGG~GTL~El~~~~~~~-------qlg~~~kPiill~~~g~w~~--l~~~l~~~~~~g~-i~~~~~~~i~~~ 183 (225)
.+|++||.|=..+|+.-+..=++-. ..-..++|+++.-. .+|.. ..+-++.+.+.|+ +=+.....+.--
T Consensus 78 ~aD~~vIaPaTaNtlAKiA~GiaDnLlt~~a~~~L~~~~pvii~P~-~M~~~p~~~~Nl~~L~~~G~~vi~P~~g~~a~p 156 (185)
T PRK06029 78 GTDGMVIAPCSMKTLAKIAHGYSDNLITRAADVMLKERRRLVLCVR-ETPLHLGHLRNMTKLAEMGAIIMPPVPAFYHRP 156 (185)
T ss_pred hhCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEec-cccCCHHHHHHHHHHHHCcCEEECCCcccccCC
Confidence 4799999999999998876322110 11125799998864 47764 3344555666665 223333445556
Q ss_pred CCHHHHHHHHHh
Q 027323 184 QTAHELICKLEE 195 (225)
Q Consensus 184 ~d~ee~~~~l~~ 195 (225)
.+.+|+++++..
T Consensus 157 ~~~~~~~~~~v~ 168 (185)
T PRK06029 157 QTLEDMVDQTVG 168 (185)
T ss_pred CCHHHHHHHHHH
Confidence 899999998875
No 69
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=50.81 E-value=2.3e+02 Score=26.92 Aligned_cols=81 Identities=16% Similarity=0.253 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEec-CccchhHHHHHHHHHHcCCCCcccccceE
Q 027323 103 GMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV-DGYYNSLLSFIDKAVDEGFIAPAARYIIV 181 (225)
Q Consensus 103 ~m~~Rk~~mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~-~g~w~~l~~~l~~~~~~g~i~~~~~~~i~ 181 (225)
.|..|-.-++..||.+|.+ ||+.|.=||. + .+||-+++-. .+--+.++. .+++.+-|.++-=..+.+.
T Consensus 283 ~f~~~~~~ll~gA~~vVSm-~GYNTvCeIL---s------~~k~aLivPr~~p~eEQliR-A~Rl~~LGL~dvL~pe~lt 351 (400)
T COG4671 283 EFRNDFESLLAGARLVVSM-GGYNTVCEIL---S------FGKPALIVPRAAPREEQLIR-AQRLEELGLVDVLLPENLT 351 (400)
T ss_pred EhhhhHHHHHHhhheeeec-ccchhhhHHH---h------CCCceEEeccCCCcHHHHHH-HHHHHhcCcceeeCcccCC
Confidence 3455566677788866655 7899966664 3 3788887732 222222221 1456676777644444443
Q ss_pred EcCCHHHHHHHHHhhcC
Q 027323 182 SAQTAHELICKLEEYVP 198 (225)
Q Consensus 182 ~~~d~ee~~~~l~~~~~ 198 (225)
++.+.++|+...+
T Consensus 352 ----~~~La~al~~~l~ 364 (400)
T COG4671 352 ----PQNLADALKAALA 364 (400)
T ss_pred ----hHHHHHHHHhccc
Confidence 6777777776654
No 70
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=50.45 E-value=17 Score=28.01 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=28.1
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027323 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (225)
Q Consensus 19 ~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lV 54 (225)
|+|+|++|.....++.=...|+.+-+.|.+.+|.++
T Consensus 1 m~v~vlfGG~S~EheVSl~Sa~~v~~~L~~~~y~v~ 36 (117)
T PF01820_consen 1 MRVAVLFGGRSSEHEVSLRSARNVYEALDKEKYEVI 36 (117)
T ss_dssp EEEEEEEETSSTTHHHHHHHHHHHHHHSHTTTEEEE
T ss_pred CeEEEEeccCchhHHHHHHHHHHHHHHHhhhcceEE
Confidence 477886666666566666788999999999999987
No 71
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.41 E-value=28 Score=31.45 Aligned_cols=106 Identities=26% Similarity=0.315 Sum_probs=59.7
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCcEEEEecCccccCCCCCCCCc
Q 027323 17 RFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVG 96 (225)
Q Consensus 17 ~~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~ 96 (225)
++++|.++.- .+ .+...+.+.++.++|.++|+.+..---. . ... +. .
T Consensus 2 ~~kkv~lI~n--~~-~~~~~~~~~~i~~~L~~~g~~v~v~~~~-~---------~~~-----~~------------~--- 48 (305)
T PRK02645 2 QLKQVIIAYK--AG-SSQAKEAAERCAKQLEARGCKVLMGPSG-P---------KDN-----PY------------P--- 48 (305)
T ss_pred CcCEEEEEEe--CC-CHHHHHHHHHHHHHHHHCCCEEEEecCc-h---------hhc-----cc------------c---
Confidence 4677888843 23 2445567888888898888886643211 0 000 00 0
Q ss_pred eEEecCCHHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecC---ccchhH------HHHHHHHH
Q 027323 97 EVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD---GYYNSL------LSFIDKAV 167 (225)
Q Consensus 97 ~~i~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~---g~w~~l------~~~l~~~~ 167 (225)
. . ........|.+|++ ||=||+.+.+..+. ..++|++.+|.+ ||.... .+.++.+.
T Consensus 49 ~------~---~~~~~~~~d~vi~~-GGDGT~l~~~~~~~-----~~~~pv~gin~~G~lGFL~~~~~~~~~~~~l~~i~ 113 (305)
T PRK02645 49 V------F---LASASELIDLAIVL-GGDGTVLAAARHLA-----PHDIPILSVNVGGHLGFLTHPRDLLQDESVWDRLQ 113 (305)
T ss_pred c------h---hhccccCcCEEEEE-CCcHHHHHHHHHhc-----cCCCCEEEEecCCcceEecCchhhcchHHHHHHHH
Confidence 0 0 00111235755555 99999998876552 347999999862 565543 34455555
Q ss_pred HcC
Q 027323 168 DEG 170 (225)
Q Consensus 168 ~~g 170 (225)
+..
T Consensus 114 ~g~ 116 (305)
T PRK02645 114 EDR 116 (305)
T ss_pred cCC
Confidence 433
No 72
>PRK00861 putative lipid kinase; Reviewed
Probab=50.09 E-value=31 Score=30.53 Aligned_cols=42 Identities=31% Similarity=0.534 Sum_probs=30.6
Q ss_pred HHHHHHHHHCCC-eEEEcCCCcchHHHHHHHHHhcCCcEEEEecC
Q 027323 40 IQLGKQLVERNI-DLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPK 83 (225)
Q Consensus 40 ~~lG~~LA~~g~-~lVtGGG~~GlM~a~a~gA~~~GG~viGi~P~ 83 (225)
.++.+..++.++ .||..||. |-...+..+.... +..+||+|.
T Consensus 47 ~~~a~~~~~~~~d~vv~~GGD-GTl~evv~~l~~~-~~~lgviP~ 89 (300)
T PRK00861 47 DQLAQEAIERGAELIIASGGD-GTLSAVAGALIGT-DIPLGIIPR 89 (300)
T ss_pred HHHHHHHHhcCCCEEEEECCh-HHHHHHHHHHhcC-CCcEEEEcC
Confidence 456666666664 45566776 9999999998765 467999995
No 73
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=50.01 E-value=35 Score=30.20 Aligned_cols=43 Identities=21% Similarity=0.374 Sum_probs=28.9
Q ss_pred HHHHHHHHHCCC-eEEEcCCCcchHHHHHHHHHhcC-C--cEEEEecC
Q 027323 40 IQLGKQLVERNI-DLVYGGGSIGLMGLVSQAVYDGG-R--HVLGVIPK 83 (225)
Q Consensus 40 ~~lG~~LA~~g~-~lVtGGG~~GlM~a~a~gA~~~G-G--~viGi~P~ 83 (225)
.++.+.+++.++ .||.-||. |-..++..|....+ + ..+||+|.
T Consensus 42 ~~~a~~~~~~~~d~vv~~GGD-GTi~ev~ngl~~~~~~~~~~lgiiP~ 88 (293)
T TIGR03702 42 QRYVAEALALGVSTVIAGGGD-GTLREVATALAQIRDDAAPALGLLPL 88 (293)
T ss_pred HHHHHHHHHcCCCEEEEEcCC-hHHHHHHHHHHhhCCCCCCcEEEEcC
Confidence 456666666654 44455555 99999999987653 2 25999994
No 74
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=49.83 E-value=42 Score=31.81 Aligned_cols=83 Identities=24% Similarity=0.398 Sum_probs=49.4
Q ss_pred CeEEEcCCCcchHHHHHHHHHh--------------------cCCcEEEEecCccccCCCCCCCCceEEecCCHHHHHHH
Q 027323 51 IDLVYGGGSIGLMGLVSQAVYD--------------------GGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAE 110 (225)
Q Consensus 51 ~~lVtGGG~~GlM~a~a~gA~~--------------------~GG~viGi~P~~~~~~e~~~~~~~~~i~~~~m~~Rk~~ 110 (225)
|.|-+|-|| |+.+-..+-+.+ .+|++.||--..+.|.....-..+.-.+..+|
T Consensus 141 FHiTWGTGP-gvl~pFvr~~re~~~~~~v~f~~RHrV~~l~~t~grvtGv~GdVLeps~v~RG~~SSR~~~GdF------ 213 (552)
T COG3573 141 FHITWGTGP-GVLEPFVRRLREAQRRGRVTFRFRHRVDGLTTTGGRVTGVRGDVLEPSDVERGQPSSREVVGDF------ 213 (552)
T ss_pred eEEeecCCc-chhhHHHHHHHHHHhCCceEEEeeeeccceEeeCCeEeeecccccCCCccccCCCccceeecce------
Confidence 567889998 999888777666 25677777443333322111111111122233
Q ss_pred HHHhcCeEEEecCCCCcHHHHH-HHHHHHHhC
Q 027323 111 MARQADAFIALPGGYGTLEELL-EVITWAQLG 141 (225)
Q Consensus 111 mv~~sDa~IvlpGG~GTL~El~-~~~~~~qlg 141 (225)
.-++.++||-.||+|--.|+. ..|--..+|
T Consensus 214 -ef~A~aviv~SGGIGGnhelVRrnWP~eRlG 244 (552)
T COG3573 214 -EFSASAVIVASGGIGGNHELVRRNWPTERLG 244 (552)
T ss_pred -EEeeeeEEEecCCcCCCHHHHHhcCchhhcC
Confidence 245789999999999988886 333323444
No 75
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=48.94 E-value=25 Score=27.99 Aligned_cols=33 Identities=15% Similarity=0.331 Sum_probs=25.6
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 027323 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL 53 (225)
Q Consensus 18 ~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~l 53 (225)
|++|+||-+|..++.+ ..|+.+...|...|+.+
T Consensus 1 M~ki~Ivy~S~tGnTe---~vA~~i~~~l~~~~~~~ 33 (151)
T COG0716 1 MMKILIVYGSRTGNTE---KVAEIIAEELGADGFEV 33 (151)
T ss_pred CCeEEEEEEcCCCcHH---HHHHHHHHHhccCCceE
Confidence 6789998899988633 46788888888887766
No 76
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.76 E-value=94 Score=27.99 Aligned_cols=62 Identities=19% Similarity=0.280 Sum_probs=37.1
Q ss_pred hcCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE------------------------------EcCCCcchHH
Q 027323 15 KSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV------------------------------YGGGSIGLMG 64 (225)
Q Consensus 15 ~~~~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lV------------------------------tGGG~~GlM~ 64 (225)
.+++++|+|+. +.. ++...+.+.++.++|.++|+.++ +=||. |-+-
T Consensus 2 ~~~~~~i~iv~--~~~-~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~lGGD-GT~L 77 (292)
T PRK03378 2 NNHFKCIGIVG--HPR-HPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIVVGGD-GNML 77 (292)
T ss_pred CccCCEEEEEE--eCC-CHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEEECCc-HHHH
Confidence 34577899984 222 34555677788887765553322 22334 6666
Q ss_pred HHHHHHHhcCCcEEEE
Q 027323 65 LVSQAVYDGGRHVLGV 80 (225)
Q Consensus 65 a~a~gA~~~GG~viGi 80 (225)
.+++.+...+-.++||
T Consensus 78 ~aa~~~~~~~~Pilgi 93 (292)
T PRK03378 78 GAARVLARYDIKVIGI 93 (292)
T ss_pred HHHHHhcCCCCeEEEE
Confidence 6666665555567777
No 77
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=48.24 E-value=1.9e+02 Score=25.88 Aligned_cols=59 Identities=24% Similarity=0.304 Sum_probs=38.7
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCcEEEEecC
Q 027323 17 RFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPK 83 (225)
Q Consensus 17 ~~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi~P~ 83 (225)
+++++-|- |++.+. .+++++.||++|+.||-=+...=-++++++.-....|..+=|+|-
T Consensus 5 ~~~~~lIT-GASsGI-------G~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~ 63 (265)
T COG0300 5 KGKTALIT-GASSGI-------GAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPA 63 (265)
T ss_pred CCcEEEEE-CCCchH-------HHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEEC
Confidence 33455555 455442 357888899999999988877666677777666555555555553
No 78
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=47.67 E-value=39 Score=28.86 Aligned_cols=81 Identities=16% Similarity=0.166 Sum_probs=53.0
Q ss_pred cCeEEEecCCCCcHHHHHHHHHHHHhC-------CCCCceEEEecCccch--hHHHHHHHHHHcCCCCcccccceEEcCC
Q 027323 115 ADAFIALPGGYGTLEELLEVITWAQLG-------IHDKPVGLLNVDGYYN--SLLSFIDKAVDEGFIAPAARYIIVSAQT 185 (225)
Q Consensus 115 sDa~IvlpGG~GTL~El~~~~~~~qlg-------~~~kPiill~~~g~w~--~l~~~l~~~~~~g~i~~~~~~~i~~~~d 185 (225)
-|+.|++|=...||..+..=++-.-+. +.++|++|+-.+-=+. ++.++++-...-+.|-|.....+.-=.+
T Consensus 81 ~~gMiI~PCSmkTla~IA~G~~dnLi~RAAdV~LKErR~LVLv~REtPl~~ihLeNMlkl~~~GaiI~Pp~PaFY~~P~s 160 (191)
T COG0163 81 TDGMIIAPCSMKTLAAIAHGFADNLITRAADVALKERRPLVLVPRETPLSLIHLENMLKLAEMGAIIMPPMPAFYHKPQS 160 (191)
T ss_pred cCcEEEEeCcHHHHHHHHhcccccHHHHHHHHHHhhCCceEEEeccCCccHHHHHHHHHHHHCCCEecCCChhhhcCCCC
Confidence 478999999999999998655433332 3578998875432222 2333333222334555666677777889
Q ss_pred HHHHHHHHHh
Q 027323 186 AHELICKLEE 195 (225)
Q Consensus 186 ~ee~~~~l~~ 195 (225)
.||+++++..
T Consensus 161 ieDlvd~~v~ 170 (191)
T COG0163 161 IEDLVDFVVG 170 (191)
T ss_pred HHHHHHHHHH
Confidence 9999998875
No 79
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=47.32 E-value=47 Score=31.45 Aligned_cols=49 Identities=18% Similarity=0.198 Sum_probs=34.6
Q ss_pred cCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecC-----ccchhHHHHHHH
Q 027323 115 ADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD-----GYYNSLLSFIDK 165 (225)
Q Consensus 115 sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~-----g~w~~l~~~l~~ 165 (225)
.|+|||.-| .-||+|-..+++++--+ .+|||||.+.- --.|...+++..
T Consensus 140 ~dGvVVtHG-TDTM~yTA~aLs~~l~~-~~kPVVlTGAqrp~~~~~sDa~~NL~~A 193 (404)
T TIGR02153 140 ADGVVVAHG-TDTMAYTAAALSFMFET-LPVPVVLVGAQRSSDRPSSDAALNLICA 193 (404)
T ss_pred CCcEEEecC-ChhHHHHHHHHHHHhhC-CCCCEEEECCCCCCCCCCchHHHHHHHH
Confidence 689888875 79999999888764322 37999998642 134566666543
No 80
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=47.21 E-value=1.3e+02 Score=25.07 Aligned_cols=73 Identities=16% Similarity=0.219 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCeEEEecC--CCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEEc
Q 027323 106 QRKAEMARQADAFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 183 (225)
Q Consensus 106 ~Rk~~mv~~sDa~IvlpG--G~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~ 183 (225)
+....+...||++|.-.. |+|+ =+.|+++ .++|++..+..+....+. + ......++-.
T Consensus 244 ~~~~~~~~~ad~~i~ps~~e~~~~--~~~Ea~a------~G~Pvi~~~~~~~~~~~~-------~-----~~~~g~~~~~ 303 (348)
T cd03820 244 KNIEEYYAKASIFVLTSRFEGFPM--VLLEAMA------FGLPVISFDCPTGPSEII-------E-----DGVNGLLVPN 303 (348)
T ss_pred chHHHHHHhCCEEEeCccccccCH--HHHHHHH------cCCCEEEecCCCchHhhh-------c-----cCcceEEeCC
Confidence 344556778998765332 3443 2566664 589999876543322221 1 1112223334
Q ss_pred CCHHHHHHHHHhhcC
Q 027323 184 QTAHELICKLEEYVP 198 (225)
Q Consensus 184 ~d~ee~~~~l~~~~~ 198 (225)
+|++++.+.|.+...
T Consensus 304 ~~~~~~~~~i~~ll~ 318 (348)
T cd03820 304 GDVEALAEALLRLME 318 (348)
T ss_pred CCHHHHHHHHHHHHc
Confidence 577888888887643
No 81
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=47.05 E-value=1.1e+02 Score=26.40 Aligned_cols=73 Identities=18% Similarity=0.225 Sum_probs=43.9
Q ss_pred HHHHHHHHhcCeEEEec----CCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceE
Q 027323 106 QRKAEMARQADAFIALP----GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIV 181 (225)
Q Consensus 106 ~Rk~~mv~~sDa~Ivlp----GG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~ 181 (225)
+....+...||++|... .|+|. =+.|+++ .++|++..+..+..+.+.. ......++
T Consensus 255 ~~~~~~~~~ad~~i~ps~~~~e~~g~--~~~Ea~~------~g~Pvi~~~~~~~~~~i~~------------~~~~g~~~ 314 (357)
T cd03795 255 EEKAALLAACDVFVFPSVERSEAFGI--VLLEAMA------FGKPVISTEIGTGGSYVNL------------HGVTGLVV 314 (357)
T ss_pred HHHHHHHHhCCEEEeCCcccccccch--HHHHHHH------cCCCEEecCCCCchhHHhh------------CCCceEEe
Confidence 44556778899987642 45564 2555664 4899999776544332211 01122344
Q ss_pred EcCCHHHHHHHHHhhcC
Q 027323 182 SAQTAHELICKLEEYVP 198 (225)
Q Consensus 182 ~~~d~ee~~~~l~~~~~ 198 (225)
-.+|++++.+.|.+...
T Consensus 315 ~~~d~~~~~~~i~~l~~ 331 (357)
T cd03795 315 PPGDPAALAEAIRRLLE 331 (357)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 45789888888887653
No 82
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.85 E-value=1.1e+02 Score=27.61 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=17.6
Q ss_pred cCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCC
Q 027323 16 SRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERN 50 (225)
Q Consensus 16 ~~~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g 50 (225)
+.+++|+|+.- .. .+.-.+.++++.++|.++|
T Consensus 2 ~~~~~v~iv~~--~~-k~~a~e~~~~i~~~L~~~g 33 (295)
T PRK01231 2 PSFRNIGLIGR--LG-SSSVVETLRRLKDFLLDRG 33 (295)
T ss_pred CCCCEEEEEec--CC-CHHHHHHHHHHHHHHHHCC
Confidence 44667888832 22 2334455666666665444
No 83
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=46.79 E-value=2.4e+02 Score=26.06 Aligned_cols=72 Identities=18% Similarity=0.089 Sum_probs=41.6
Q ss_pred cCeEE-EecCCCCcHHHHHHHHHHHHhC-CCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEEcCCHHHHHHH
Q 027323 115 ADAFI-ALPGGYGTLEELLEVITWAQLG-IHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICK 192 (225)
Q Consensus 115 sDa~I-vlpGG~GTL~El~~~~~~~qlg-~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~ 192 (225)
.|+++ .++|++...+++.+.+.-..-. ..+|||++...+...+...+. +.+.|+ .+.++++++++++.
T Consensus 311 vd~vlv~~~~~~~~~~~va~~i~~~~~~~~~~kPvv~~~~g~~~~~~~~~---L~~~Gi-------~ip~f~~pe~A~~a 380 (388)
T PRK00696 311 VKAILVNIFGGITRCDVIAEGIIAAVKEVGVTVPLVVRLEGTNVELGKKI---LAESGL-------NIIAADTLDDAAQK 380 (388)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHH---HHHCCC-------CceecCCHHHHHHH
Confidence 46655 4667777777777776432211 157999554322122223222 333231 25679999999999
Q ss_pred HHhh
Q 027323 193 LEEY 196 (225)
Q Consensus 193 l~~~ 196 (225)
+.+.
T Consensus 381 l~~~ 384 (388)
T PRK00696 381 AVEA 384 (388)
T ss_pred HHHH
Confidence 8864
No 84
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=46.60 E-value=79 Score=27.01 Aligned_cols=41 Identities=32% Similarity=0.421 Sum_probs=22.3
Q ss_pred HHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCcc
Q 027323 111 MARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGY 155 (225)
Q Consensus 111 mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~ 155 (225)
.....|++++ .+|.|+-+.+..+... +..++.|++ ++.++.
T Consensus 74 ~~~~~d~v~i-g~gl~~~~~~~~i~~~--~~~~~~pvV-lDa~~~ 114 (254)
T cd01171 74 LLERADAVVI-GPGLGRDEEAAEILEK--ALAKDKPLV-LDADAL 114 (254)
T ss_pred hhccCCEEEE-ecCCCCCHHHHHHHHH--HHhcCCCEE-EEcHHH
Confidence 3456777665 5568875444443322 223467865 476543
No 85
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.60 E-value=94 Score=28.09 Aligned_cols=60 Identities=23% Similarity=0.374 Sum_probs=37.1
Q ss_pred cCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe------------------------------------EEEcCCC
Q 027323 16 SRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNID------------------------------------LVYGGGS 59 (225)
Q Consensus 16 ~~~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~------------------------------------lVtGGG~ 59 (225)
+.+++|+|+. +. ..+...+.+.++.++|.++|+. ++.|| .
T Consensus 3 ~~~~~i~ii~--~~-~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGG-D 78 (296)
T PRK04539 3 SPFHNIGIVT--RP-NTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAVLGG-D 78 (296)
T ss_pred CCCCEEEEEe--cC-CCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEEECC-c
Confidence 3466788884 22 2355566777888877665533 33343 4
Q ss_pred cchHHHHHHHHHhcCCcEEEE
Q 027323 60 IGLMGLVSQAVYDGGRHVLGV 80 (225)
Q Consensus 60 ~GlM~a~a~gA~~~GG~viGi 80 (225)
|-|-.+++-+...+-.++||
T Consensus 79 -GT~L~aa~~~~~~~~PilGI 98 (296)
T PRK04539 79 -GTFLSVAREIAPRAVPIIGI 98 (296)
T ss_pred -HHHHHHHHHhcccCCCEEEE
Confidence 77766666665556677887
No 86
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=46.36 E-value=72 Score=26.78 Aligned_cols=71 Identities=23% Similarity=0.261 Sum_probs=39.8
Q ss_pred HHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEEcCCHH
Q 027323 108 KAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAH 187 (225)
Q Consensus 108 k~~mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~e 187 (225)
..-+...||++|.-...-|.-.=+.|+++ .++|++.-+..+. . ++++ +.....++-.+|++
T Consensus 257 ~~~~~~~adi~i~ps~~e~~~~~~~Ea~~------~G~Pvi~s~~~~~-~---~~i~---------~~~~g~~~~~~~~~ 317 (359)
T cd03808 257 VPELLAAADVFVLPSYREGLPRVLLEAMA------MGRPVIATDVPGC-R---EAVI---------DGVNGFLVPPGDAE 317 (359)
T ss_pred HHHHHHhccEEEecCcccCcchHHHHHHH------cCCCEEEecCCCc-h---hhhh---------cCcceEEECCCCHH
Confidence 33456789987654322222223556664 5899998765432 2 2211 11222344456899
Q ss_pred HHHHHHHhhc
Q 027323 188 ELICKLEEYV 197 (225)
Q Consensus 188 e~~~~l~~~~ 197 (225)
++.+.+.+..
T Consensus 318 ~~~~~i~~l~ 327 (359)
T cd03808 318 ALADAIERLI 327 (359)
T ss_pred HHHHHHHHHH
Confidence 8888888754
No 87
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=46.28 E-value=77 Score=25.05 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCcEEEE
Q 027323 38 AAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (225)
Q Consensus 38 ~A~~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi 80 (225)
.+.-+...|...||.+++-|.. =-.+.+++.|.+.+..+||+
T Consensus 18 g~~iv~~~l~~~GfeVi~lg~~-~s~e~~v~aa~e~~adii~i 59 (132)
T TIGR00640 18 GAKVIATAYADLGFDVDVGPLF-QTPEEIARQAVEADVHVVGV 59 (132)
T ss_pred HHHHHHHHHHhCCcEEEECCCC-CCHHHHHHHHHHcCCCEEEE
Confidence 4455677888899999999976 66778889999999999999
No 88
>cd00587 HCP_like The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-beta rossman fold domain. HCP, formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. Acetyl-CoA synthase (ACS), is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide and CoA.
Probab=46.28 E-value=47 Score=29.67 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=32.4
Q ss_pred HhhcCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC
Q 027323 13 ALKSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGG 58 (225)
Q Consensus 13 ~~~~~~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGGG 58 (225)
....+++-|++++|-.... .+.+...+++++|-++++-+++.|+
T Consensus 89 Iv~G~I~Gv~~ivGC~n~~--~~~~~~~~iakeL~k~d~LVlt~GC 132 (258)
T cd00587 89 VVDGTIPGVALIVGCNNDK--KQDKAYADIAKELMKRGVMVLATGC 132 (258)
T ss_pred HHcCCCCeEEEEEeCCCCC--ccchHHHHHHHHHHhCCEEEEecch
Confidence 4456888899887755432 3334557899999999999998875
No 89
>PRK13054 lipid kinase; Reviewed
Probab=46.07 E-value=45 Score=29.62 Aligned_cols=43 Identities=21% Similarity=0.416 Sum_probs=27.7
Q ss_pred HHHHHHHHHCCC-eEEEcCCCcchHHHHHHHHHhcC-C--cEEEEecC
Q 027323 40 IQLGKQLVERNI-DLVYGGGSIGLMGLVSQAVYDGG-R--HVLGVIPK 83 (225)
Q Consensus 40 ~~lG~~LA~~g~-~lVtGGG~~GlM~a~a~gA~~~G-G--~viGi~P~ 83 (225)
.++.+.+++.++ .||..||. |-...++.+..... + ..+||+|.
T Consensus 46 ~~~a~~~~~~~~d~vvv~GGD-GTl~evv~~l~~~~~~~~~~lgiiP~ 92 (300)
T PRK13054 46 ARYVEEALALGVATVIAGGGD-GTINEVATALAQLEGDARPALGILPL 92 (300)
T ss_pred HHHHHHHHHcCCCEEEEECCc-cHHHHHHHHHHhhccCCCCcEEEEeC
Confidence 344554545554 45566666 98888888877542 2 36999994
No 90
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=45.92 E-value=73 Score=30.33 Aligned_cols=104 Identities=20% Similarity=0.242 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHH-----CCCeEEEcCC---CcchHHHHHHHHHhcCC--cEEEEecCccccCCCCCCCCceEEecCCHHH
Q 027323 37 LAAIQLGKQLVE-----RNIDLVYGGG---SIGLMGLVSQAVYDGGR--HVLGVIPKTLMPREITGDTVGEVKAVSGMHQ 106 (225)
Q Consensus 37 ~~A~~lG~~LA~-----~g~~lVtGGG---~~GlM~a~a~gA~~~GG--~viGi~P~~~~~~e~~~~~~~~~i~~~~m~~ 106 (225)
+.|..+++.+|+ .+.-.+|||- +.=||.|+...+.+.+- +++.+..+.+. +++...+.-..|.+
T Consensus 96 ~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~------~~~v~a~~~~~~~~ 169 (408)
T COG0593 96 RLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFT------NDFVKALRDNEMEK 169 (408)
T ss_pred HHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHH------HHHHHHHHhhhHHH
Confidence 467788888888 4566777763 33389999999999876 45555322110 00000111123322
Q ss_pred HHHHHHHhcCeEEE-----ecCCCCcHHHHHHHHHHHHhCCCCCceEEE
Q 027323 107 RKAEMARQADAFIA-----LPGGYGTLEELLEVITWAQLGIHDKPVGLL 150 (225)
Q Consensus 107 Rk~~mv~~sDa~Iv-----lpGG~GTL~El~~~~~~~qlg~~~kPiill 150 (225)
=|... +.|++++ +.|.-.|.+|+|.+.. .+...+|-|++.
T Consensus 170 Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN--~l~~~~kqIvlt 214 (408)
T COG0593 170 FKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFN--ALLENGKQIVLT 214 (408)
T ss_pred HHHhh--ccCeeeechHhHhcCChhHHHHHHHHHH--HHHhcCCEEEEE
Confidence 22222 6777775 6788899999998774 333345655443
No 91
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=45.57 E-value=1.1e+02 Score=23.77 Aligned_cols=17 Identities=12% Similarity=0.006 Sum_probs=8.5
Q ss_pred cceEEcCCHHHHHHHHH
Q 027323 178 YIIVSAQTAHELICKLE 194 (225)
Q Consensus 178 ~~i~~~~d~ee~~~~l~ 194 (225)
..+.++.|+--+.+...
T Consensus 96 ~~i~lVTs~~H~~Ra~~ 112 (150)
T cd06259 96 RSVLLVTSAYHMPRALL 112 (150)
T ss_pred CeEEEECCHHHHHHHHH
Confidence 34555666654444333
No 92
>PRK12361 hypothetical protein; Provisional
Probab=45.05 E-value=44 Score=32.45 Aligned_cols=43 Identities=28% Similarity=0.371 Sum_probs=29.4
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCcchHHHHHHHHHhcCCcEEEEecC
Q 027323 39 AIQLGKQLVERNI-DLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPK 83 (225)
Q Consensus 39 A~~lG~~LA~~g~-~lVtGGG~~GlM~a~a~gA~~~GG~viGi~P~ 83 (225)
|.++.+..++.|+ .||..||. |--..+..+.... +..+||+|.
T Consensus 286 a~~la~~~~~~~~d~Viv~GGD-GTl~ev~~~l~~~-~~~lgiiP~ 329 (547)
T PRK12361 286 AEALAKQARKAGADIVIACGGD-GTVTEVASELVNT-DITLGIIPL 329 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCC-cHHHHHHHHHhcC-CCCEEEecC
Confidence 3456666666665 45556666 9888888888654 467999994
No 93
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=44.89 E-value=46 Score=32.12 Aligned_cols=44 Identities=16% Similarity=0.326 Sum_probs=30.2
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCcchHHHHHHHHHhcC------CcEEEEecC
Q 027323 39 AIQLGKQLVERNI-DLVYGGGSIGLMGLVSQAVYDGG------RHVLGVIPK 83 (225)
Q Consensus 39 A~~lG~~LA~~g~-~lVtGGG~~GlM~a~a~gA~~~G------G~viGi~P~ 83 (225)
|+++.+.++..++ .||.-||. |..-.+..|..... ...+||+|.
T Consensus 157 A~~la~~~~~~~~D~VV~vGGD-GTlnEVvNGL~~~~~~~~~~~~pLGiIPa 207 (481)
T PLN02958 157 AKEVVRTMDLSKYDGIVCVSGD-GILVEVVNGLLEREDWKTAIKLPIGMVPA 207 (481)
T ss_pred HHHHHHHhhhcCCCEEEEEcCC-CHHHHHHHHHhhCccccccccCceEEecC
Confidence 4455666655665 45566666 99999999987542 356999994
No 94
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=44.55 E-value=58 Score=31.05 Aligned_cols=48 Identities=13% Similarity=0.212 Sum_probs=35.7
Q ss_pred cCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecC-----ccchhHHHHHHH
Q 027323 115 ADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD-----GYYNSLLSFIDK 165 (225)
Q Consensus 115 sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~-----g~w~~l~~~l~~ 165 (225)
.|+|||..| .-||+|-+.+++++- ..+|||||.+.- -..|...+++..
T Consensus 153 ~dGvVVtHG-TDTM~yTA~aLs~~l--~~~kPVVlTGAqrp~~~~~sDa~~NL~~A 205 (419)
T PRK04183 153 ADGVVVAHG-TDTMHYTAAALSFML--KTPVPIVFVGAQRSSDRPSSDAAMNLICA 205 (419)
T ss_pred CCeEEEecC-CchHHHHHHHHHHhc--CCCCCEEEeCCCCCCCCCCchHHHHHHHH
Confidence 799998885 789999999988754 358999998642 245566666553
No 95
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=44.39 E-value=2.1e+02 Score=25.60 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=20.4
Q ss_pred CCCeEEEcCCCcchHHHHHHHHHhcCCc-EEEEec
Q 027323 49 RNIDLVYGGGSIGLMGLVSQAVYDGGRH-VLGVIP 82 (225)
Q Consensus 49 ~g~~lVtGGG~~GlM~a~a~gA~~~GG~-viGi~P 82 (225)
....||+|+|..|+ ++..-|+..|.. ++.+..
T Consensus 177 g~~VlV~G~g~vG~--~a~~~ak~~G~~~Vi~~~~ 209 (358)
T TIGR03451 177 GDSVAVIGCGGVGD--AAIAGAALAGASKIIAVDI 209 (358)
T ss_pred CCEEEEECCCHHHH--HHHHHHHHcCCCeEEEEcC
Confidence 35678887755444 455567777875 777743
No 96
>PRK13059 putative lipid kinase; Reviewed
Probab=44.11 E-value=57 Score=28.97 Aligned_cols=32 Identities=31% Similarity=0.748 Sum_probs=22.7
Q ss_pred cCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEE
Q 027323 115 ADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 150 (225)
Q Consensus 115 sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill 150 (225)
.| .|+.-||=||++|+...+. +.+ .+.|+.++
T Consensus 57 ~d-~vi~~GGDGTv~evv~gl~--~~~-~~~~lgvi 88 (295)
T PRK13059 57 YK-YILIAGGDGTVDNVVNAMK--KLN-IDLPIGIL 88 (295)
T ss_pred CC-EEEEECCccHHHHHHHHHH--hcC-CCCcEEEE
Confidence 45 6678899999999987763 211 24678776
No 97
>PRK06756 flavodoxin; Provisional
Probab=43.96 E-value=38 Score=26.62 Aligned_cols=33 Identities=12% Similarity=0.233 Sum_probs=19.9
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 027323 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL 53 (225)
Q Consensus 18 ~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~l 53 (225)
|++|.|+.+|..++.+ +.|+.+++.|.+.|+.+
T Consensus 1 mmkv~IiY~S~tGnTe---~vA~~ia~~l~~~g~~v 33 (148)
T PRK06756 1 MSKLVMIFASMSGNTE---EMADHIAGVIRETENEI 33 (148)
T ss_pred CceEEEEEECCCchHH---HHHHHHHHHHhhcCCeE
Confidence 3467776677776432 45667777666555543
No 98
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=43.83 E-value=1.2e+02 Score=26.51 Aligned_cols=74 Identities=18% Similarity=0.274 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCeEEEec-CCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEEc
Q 027323 105 HQRKAEMARQADAFIALP-GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 183 (225)
Q Consensus 105 ~~Rk~~mv~~sDa~Ivlp-GG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~ 183 (225)
.+...-+...||++|... -|+|.. +.|+++ .++||+..+.+|. ..+ +.+.....++-.
T Consensus 252 ~~~~~~~~~~ad~~v~ps~e~~g~~--~~Eama------~G~Pvi~~~~~~~-~e~------------i~~~~~G~~~~~ 310 (351)
T cd03804 252 DEELRDLYARARAFLFPAEEDFGIV--PVEAMA------SGTPVIAYGKGGA-LET------------VIDGVTGILFEE 310 (351)
T ss_pred HHHHHHHHHhCCEEEECCcCCCCch--HHHHHH------cCCCEEEeCCCCC-cce------------eeCCCCEEEeCC
Confidence 344556778999888632 567765 466664 5899999876542 211 112222334446
Q ss_pred CCHHHHHHHHHhhcCC
Q 027323 184 QTAHELICKLEEYVPK 199 (225)
Q Consensus 184 ~d~ee~~~~l~~~~~~ 199 (225)
+|++++.+.|.+....
T Consensus 311 ~~~~~la~~i~~l~~~ 326 (351)
T cd03804 311 QTVESLAAAVERFEKN 326 (351)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 7899988888876543
No 99
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=43.77 E-value=1.2e+02 Score=26.17 Aligned_cols=71 Identities=15% Similarity=0.238 Sum_probs=41.3
Q ss_pred HHHHHHHhcCeEEEec--CCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEEcC
Q 027323 107 RKAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQ 184 (225)
Q Consensus 107 Rk~~mv~~sDa~Ivlp--GG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 184 (225)
....+...||++|.-. .|+|. =+.|+++ .++|+|..+..++-+ . +.......+.-..
T Consensus 257 ~~~~~~~~ad~~l~ps~~e~~g~--~~~Eam~------~g~PvI~~~~~~~~e----~---------~~~~~~g~~~~~~ 315 (365)
T cd03825 257 SLALIYSAADVFVVPSLQENFPN--TAIEALA------CGTPVVAFDVGGIPD----I---------VDHGVTGYLAKPG 315 (365)
T ss_pred HHHHHHHhCCEEEeccccccccH--HHHHHHh------cCCCEEEecCCCChh----h---------eeCCCceEEeCCC
Confidence 4455678899877643 34443 3556664 489999987654321 1 1111122333445
Q ss_pred CHHHHHHHHHhhcC
Q 027323 185 TAHELICKLEEYVP 198 (225)
Q Consensus 185 d~ee~~~~l~~~~~ 198 (225)
|++++.+.|.+...
T Consensus 316 ~~~~~~~~l~~l~~ 329 (365)
T cd03825 316 DPEDLAEGIEWLLA 329 (365)
T ss_pred CHHHHHHHHHHHHh
Confidence 78888888877653
No 100
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=42.41 E-value=79 Score=30.71 Aligned_cols=86 Identities=17% Similarity=0.227 Sum_probs=47.8
Q ss_pred EEEcCCCcchHHHHHHHHHhcCCcEEEEecCccccCCCCCCCCceEEecCCHHHHHHHHHHhcCeEEEecCCCCcHH-HH
Q 027323 53 LVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLE-EL 131 (225)
Q Consensus 53 lVtGGG~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~i~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~-El 131 (225)
+|.|.|..| ..+++-++..|.+|+.+-++.....+..... +...++.+ +++.||.||..+|..+.++ |.
T Consensus 258 gVIG~G~IG--r~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G----~~~~~lee----ll~~ADIVI~atGt~~iI~~e~ 327 (476)
T PTZ00075 258 VVCGYGDVG--KGCAQALRGFGARVVVTEIDPICALQAAMEG----YQVVTLED----VVETADIFVTATGNKDIITLEH 327 (476)
T ss_pred EEECCCHHH--HHHHHHHHHCCCEEEEEeCCchhHHHHHhcC----ceeccHHH----HHhcCCEEEECCCcccccCHHH
Confidence 466776533 4567777778888877632211100000111 11123432 4578999999998777765 55
Q ss_pred HHHHHHHHhCCCCCceEEEecCccc
Q 027323 132 LEVITWAQLGIHDKPVGLLNVDGYY 156 (225)
Q Consensus 132 ~~~~~~~qlg~~~kPiill~~~g~w 156 (225)
+..+ +.-.+|+|.+.+.
T Consensus 328 ~~~M--------KpGAiLINvGr~d 344 (476)
T PTZ00075 328 MRRM--------KNNAIVGNIGHFD 344 (476)
T ss_pred Hhcc--------CCCcEEEEcCCCc
Confidence 5443 3446777886553
No 101
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=42.20 E-value=1.6e+02 Score=26.21 Aligned_cols=30 Identities=27% Similarity=0.228 Sum_probs=19.2
Q ss_pred CCeEEEcCCCcchHHHHHHHHHhcCC-cEEEEe
Q 027323 50 NIDLVYGGGSIGLMGLVSQAVYDGGR-HVLGVI 81 (225)
Q Consensus 50 g~~lVtGGG~~GlM~a~a~gA~~~GG-~viGi~ 81 (225)
...+|+|+|..|+|- ..-|+..|. +++.+.
T Consensus 171 ~~VlV~G~G~vG~~a--iqlak~~G~~~Vi~~~ 201 (343)
T PRK09880 171 KRVFVSGVGPIGCLI--VAAVKTLGAAEIVCAD 201 (343)
T ss_pred CEEEEECCCHHHHHH--HHHHHHcCCcEEEEEe
Confidence 467788877666654 455666776 466663
No 102
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=42.18 E-value=33 Score=28.35 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=18.2
Q ss_pred cceEEEEcCCCCCCChHHHHHHHH
Q 027323 18 FKRVCVFCGSSPGKSPSYQLAAIQ 41 (225)
Q Consensus 18 ~~~I~VfggS~~~~~~~~~~~A~~ 41 (225)
|++|||||||=++.+--+...|++
T Consensus 1 m~~i~ifGGSFDP~H~GHl~ia~~ 24 (174)
T PRK08887 1 MKKIAVFGSAFNPPSLGHKSVIES 24 (174)
T ss_pred CCeEEEeCCCCCCCCHHHHHHHHH
Confidence 457999999988877777655554
No 103
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=42.18 E-value=65 Score=30.54 Aligned_cols=70 Identities=21% Similarity=0.197 Sum_probs=39.3
Q ss_pred CeEEEcCCCcchHHHHHHHHHhcCCcEEEEecCccccCCCCCCCCceEEecCCHHHHHHHHHHhcCeEEEecCCCCcHHH
Q 027323 51 IDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEE 130 (225)
Q Consensus 51 ~~lVtGGG~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~i~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~E 130 (225)
..+|.|.|+.|.. +++.++..|.+|+.+-.+.....+.....+ .+.++. . .+..+|.+|...|..+.+++
T Consensus 197 ~VvViG~G~IG~~--vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~----~v~~le---e-al~~aDVVItaTG~~~vI~~ 266 (406)
T TIGR00936 197 TVVVAGYGWCGKG--IAMRARGMGARVIVTEVDPIRALEAAMDGF----RVMTME---E-AAKIGDIFITATGNKDVIRG 266 (406)
T ss_pred EEEEECCCHHHHH--HHHHHhhCcCEEEEEeCChhhHHHHHhcCC----EeCCHH---H-HHhcCCEEEECCCCHHHHHH
Confidence 3456788776654 555667778888887322111111111111 122342 2 35789999999888777764
No 104
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=42.11 E-value=53 Score=27.46 Aligned_cols=82 Identities=15% Similarity=0.102 Sum_probs=49.6
Q ss_pred hcCeEEEecCCCCcHHHHHHHH-----HHH--HhCCCCCceEEEecCccchh--HHHHHHHHHHcCC-CCcccccceEEc
Q 027323 114 QADAFIALPGGYGTLEELLEVI-----TWA--QLGIHDKPVGLLNVDGYYNS--LLSFIDKAVDEGF-IAPAARYIIVSA 183 (225)
Q Consensus 114 ~sDa~IvlpGG~GTL~El~~~~-----~~~--qlg~~~kPiill~~~g~w~~--l~~~l~~~~~~g~-i~~~~~~~i~~~ 183 (225)
.+|++||.|=..+|+.-+..=+ +-. ..-..++|+++.=.+ .|.. -.+-++.+.+.|+ +=+.....+.--
T Consensus 75 ~aD~~vIaPATantiAkiA~GiaD~Llt~~a~~~L~~~~pv~i~P~~-m~~~~~~~~Nl~~L~~~G~~ii~P~~g~~~~p 153 (181)
T TIGR00421 75 PFDGMVVVPCSMKTLSAIANGYADNLITRAADVCLKERRKLVLVPRE-TPLNSIHLENMLRLSRMGAIILPPMPAFYTRP 153 (181)
T ss_pred hhCEEEEecCCHhHHHHHHcccCCCHHHHHHHHHHhcCCCEEEEeCC-CcCCHHHHHHHHHHHHCCCEEECCCCcccCCC
Confidence 4899999999999998876322 110 011257999988643 5543 2233345555554 222233445556
Q ss_pred CCHHHHHHHHHhh
Q 027323 184 QTAHELICKLEEY 196 (225)
Q Consensus 184 ~d~ee~~~~l~~~ 196 (225)
.+++|+++++...
T Consensus 154 ~~~~~~~~~i~~~ 166 (181)
T TIGR00421 154 KSVEDMIDFIVGR 166 (181)
T ss_pred CCHHHHHHHHHHH
Confidence 8899988777653
No 105
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=41.92 E-value=70 Score=29.32 Aligned_cols=52 Identities=15% Similarity=0.203 Sum_probs=36.3
Q ss_pred HhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEec-----CccchhHHHHHHHH
Q 027323 113 RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV-----DGYYNSLLSFIDKA 166 (225)
Q Consensus 113 ~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~-----~g~w~~l~~~l~~~ 166 (225)
...|+|||.-| .-||+|-..++.+.. ...+|||||.+. .--.|...++...+
T Consensus 80 ~~~dG~VVtHG-TDTmeeTA~~L~~~l-~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av 136 (335)
T PRK09461 80 DDYDGFVILHG-TDTMAYTASALSFML-ENLGKPVIVTGSQIPLAELRSDGQTNLLNAL 136 (335)
T ss_pred ccCCeEEEeec-cchHHHHHHHHHHHH-hCCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 45799998875 799999998887643 224799999864 12356666665543
No 106
>PLN02275 transferase, transferring glycosyl groups
Probab=41.89 E-value=2e+02 Score=26.03 Aligned_cols=71 Identities=17% Similarity=0.171 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCeEEEec-C--CCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceE
Q 027323 105 HQRKAEMARQADAFIALP-G--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIV 181 (225)
Q Consensus 105 ~~Rk~~mv~~sDa~Ivlp-G--G~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~ 181 (225)
.+.-..+...||++|+.. . |.|--.=+.|+++ .++||+..+.+| ..+ ++++| ... +
T Consensus 297 ~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA------~G~PVVa~~~gg----~~e----iv~~g-----~~G--~ 355 (371)
T PLN02275 297 AEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFG------CGLPVCAVSYSC----IGE----LVKDG-----KNG--L 355 (371)
T ss_pred HHHHHHHHHhCCEEEEeccccccccccHHHHHHHH------CCCCEEEecCCC----hHH----HccCC-----CCe--E
Confidence 344456678999998631 2 2233344667764 589999987654 222 22221 112 2
Q ss_pred EcCCHHHHHHHHHhh
Q 027323 182 SAQTAHELICKLEEY 196 (225)
Q Consensus 182 ~~~d~ee~~~~l~~~ 196 (225)
+++|++++.+.|.+.
T Consensus 356 lv~~~~~la~~i~~l 370 (371)
T PLN02275 356 LFSSSSELADQLLEL 370 (371)
T ss_pred EECCHHHHHHHHHHh
Confidence 245788888887654
No 107
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=41.71 E-value=68 Score=26.40 Aligned_cols=39 Identities=10% Similarity=0.184 Sum_probs=28.0
Q ss_pred HhhcCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027323 13 ALKSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (225)
Q Consensus 13 ~~~~~~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lV 54 (225)
....+++.|+|. |...+..... .|..|+..||++|+.++
T Consensus 12 ~~~~~~kvI~v~-s~kgG~GKTt--~a~~LA~~la~~G~rVl 50 (204)
T TIGR01007 12 FSGAEIKVLLIT-SVKPGEGKST--TSANIAVAFAQAGYKTL 50 (204)
T ss_pred hhcCCCcEEEEe-cCCCCCCHHH--HHHHHHHHHHhCCCeEE
Confidence 344557888887 4555555543 57899999999998766
No 108
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=41.65 E-value=72 Score=28.43 Aligned_cols=75 Identities=13% Similarity=0.146 Sum_probs=46.9
Q ss_pred HHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHh-CCCCCceEEEecCcc-chhHHHHHHHHHHcCCCCcccccceEE
Q 027323 105 HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQL-GIHDKPVGLLNVDGY-YNSLLSFIDKAVDEGFIAPAARYIIVS 182 (225)
Q Consensus 105 ~~Rk~~mv~~sDa~IvlpGG~GTL~El~~~~~~~ql-g~~~kPiill~~~g~-w~~l~~~l~~~~~~g~i~~~~~~~i~~ 182 (225)
..|....++.+|.+|+ +||--.+.-+..+... ..++.|++++|.+.. ++.. -.+.+
T Consensus 205 ~~~a~~~~~~~Dlllv----vGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~~~~~------------------~~~~i 262 (285)
T PRK05333 205 VAAARAALDAADAVLV----VGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTRADPL------------------LTLKV 262 (285)
T ss_pred HHHHHHHHhcCCEEEE----ECcCceecchhhhHHHHHHCCCeEEEECCCCCCCCcc------------------eeEEE
Confidence 4556666788998888 5565555433322222 235679999997531 1110 13677
Q ss_pred cCCHHHHHHHHHhhcCCCC
Q 027323 183 AQTAHELICKLEEYVPKHS 201 (225)
Q Consensus 183 ~~d~ee~~~~l~~~~~~~~ 201 (225)
..+..+++..|.+.+....
T Consensus 263 ~g~~~evL~~l~~~l~~~~ 281 (285)
T PRK05333 263 EASCAQALAALVARLGLAG 281 (285)
T ss_pred eCCHHHHHHHHHHHhCCCC
Confidence 8899999999987664433
No 109
>PTZ00032 60S ribosomal protein L18; Provisional
Probab=41.59 E-value=49 Score=28.62 Aligned_cols=40 Identities=23% Similarity=0.264 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHH----CCCeEE-E--cC-CCcchHHHHHHHHHhcCC
Q 027323 36 QLAAIQLGKQLVE----RNIDLV-Y--GG-GSIGLMGLVSQAVYDGGR 75 (225)
Q Consensus 36 ~~~A~~lG~~LA~----~g~~lV-t--GG-G~~GlM~a~a~gA~~~GG 75 (225)
.+.|.++|+.||+ .|+.=| + || =+-|-++|.|++|+++|-
T Consensus 162 ieaA~~VGk~IAerAl~kGI~kVvFDRgGy~YHGRVkALAdaARe~GL 209 (211)
T PTZ00032 162 IKAAYELGKLIGRKALSKGISKVRFDRAHYKYAGKVEALAEGARAVGL 209 (211)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCCCeehhHHHHHHHHHHHcCC
Confidence 3678889999987 465443 2 22 236899999999999873
No 110
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=41.46 E-value=51 Score=30.00 Aligned_cols=39 Identities=13% Similarity=0.074 Sum_probs=29.8
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 027323 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYG 56 (225)
Q Consensus 18 ~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtG 56 (225)
|.+|+|++|......+.=...|+.+.+.|-+.||.++--
T Consensus 1 ~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~v~~i 39 (347)
T PRK14572 1 MAKIAVFFGGSSTEHSISIRTGCFICATLHTMGHSVKPI 39 (347)
T ss_pred CcEEEEEECCCCcchHHHHHhHHHHHHHHhhcCCEEEEE
Confidence 457888777666556655678999999999999998644
No 111
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.31 E-value=1.5e+02 Score=26.89 Aligned_cols=34 Identities=26% Similarity=0.269 Sum_probs=19.9
Q ss_pred hcCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCC
Q 027323 15 KSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNI 51 (225)
Q Consensus 15 ~~~~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~ 51 (225)
++++++|+++.- .. .+...+.++++.++|.++|+
T Consensus 2 ~~~~~~I~iv~~--~~-~~~~~~~~~~l~~~L~~~g~ 35 (306)
T PRK03372 2 MTASRRVLLVAH--TG-RDEATEAARRVAKQLGDAGI 35 (306)
T ss_pred CCCccEEEEEec--CC-CHHHHHHHHHHHHHHHHCCC
Confidence 456677888832 22 24445667777777655443
No 112
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=40.97 E-value=81 Score=27.88 Aligned_cols=69 Identities=19% Similarity=0.164 Sum_probs=37.2
Q ss_pred eEEEecCCCCcHHHHHHHHHHHHhCC-CCCceEEEe---cCccchhHHHHHHHHHHcCCCCcccccceEEc--CCHHHHH
Q 027323 117 AFIALPGGYGTLEELLEVITWAQLGI-HDKPVGLLN---VDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA--QTAHELI 190 (225)
Q Consensus 117 a~IvlpGG~GTL~El~~~~~~~qlg~-~~kPiill~---~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~--~d~ee~~ 190 (225)
|+|+|-||.|| .+|. .+||++=+. ..-+.+-..+.+..+...- -.......+++. ++.++..
T Consensus 2 a~viLaGG~Gt-----------RLg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~-~~~~~Ip~~imts~~t~~~t~ 69 (266)
T cd04180 2 AVVLLAGGLGT-----------RLGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEID-LYSCKIPEQLMNSKYTHEKTQ 69 (266)
T ss_pred EEEEECCCCcc-----------ccCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHh-hcCCCCCEEEEcCchhHHHHH
Confidence 68999999999 3453 467766443 3336666666655432210 000111222222 3455678
Q ss_pred HHHHhhc
Q 027323 191 CKLEEYV 197 (225)
Q Consensus 191 ~~l~~~~ 197 (225)
++++++.
T Consensus 70 ~~l~~~~ 76 (266)
T cd04180 70 CYFEKIN 76 (266)
T ss_pred HHHHHcC
Confidence 8887754
No 113
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=40.85 E-value=46 Score=30.97 Aligned_cols=34 Identities=26% Similarity=0.285 Sum_probs=26.9
Q ss_pred CeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEec
Q 027323 116 DAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 152 (225)
Q Consensus 116 Da~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~ 152 (225)
|+|||.. |.-||+|-...+.++.- .+|||+|.+.
T Consensus 102 dGvVItH-GTDTmeeTA~~L~l~l~--~~kPVVlTGa 135 (351)
T COG0252 102 DGVVITH-GTDTMEETAFFLSLTLN--TPKPVVLTGA 135 (351)
T ss_pred CeEEEeC-CCchHHHHHHHHHHHhc--CCCCEEEeCC
Confidence 7888776 57999999988877542 3899999864
No 114
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=40.37 E-value=21 Score=31.78 Aligned_cols=29 Identities=34% Similarity=0.677 Sum_probs=22.9
Q ss_pred HHHHHHHCCCeEEEcCCCcchHHHHHHHHHh
Q 027323 42 LGKQLVERNIDLVYGGGSIGLMGLVSQAVYD 72 (225)
Q Consensus 42 lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~ 72 (225)
|+|.|+.+...||.||| |.=++++-|+++
T Consensus 2 lar~l~g~~igLVL~GG--GaRG~ahiGVL~ 30 (269)
T cd07227 2 LARRLCGQAIGLVLGGG--GARGISHIGILQ 30 (269)
T ss_pred hhhHhcCCCEEEEECCc--HHHHHHHHHHHH
Confidence 78888888899988886 777777777665
No 115
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=40.26 E-value=1.1e+02 Score=28.20 Aligned_cols=49 Identities=10% Similarity=0.108 Sum_probs=26.5
Q ss_pred CCc-eEEEecCccchhHHHHHHHHHHcCCCCcccccceEEcCCHHHHHHHHHh
Q 027323 144 DKP-VGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEE 195 (225)
Q Consensus 144 ~kP-iill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~l~~ 195 (225)
.+| +++++..-|+..+...+..+...-..+ ...+++.-+++.++++..+
T Consensus 125 srpllvilDd~fy~ks~Ryel~~LAr~~~~~---~~~V~ld~ple~~l~RN~~ 174 (340)
T TIGR03575 125 SRPLCLVLDDNFYYQSMRYEVYQLARKYSLG---FCQLFLDCPVESCLLRNKQ 174 (340)
T ss_pred hCCCCceecCCCCCHHHHHHHHHHHHHhCCC---EEEEEEeCCHHHHHHHHhc
Confidence 577 456665556666666665554431111 2345666666666666554
No 116
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=40.22 E-value=76 Score=29.04 Aligned_cols=29 Identities=17% Similarity=0.023 Sum_probs=20.4
Q ss_pred ceEEecCCHHHHHHHHHHhcCeEEEecCC
Q 027323 96 GEVKAVSGMHQRKAEMARQADAFIALPGG 124 (225)
Q Consensus 96 ~~~i~~~~m~~Rk~~mv~~sDa~IvlpGG 124 (225)
.|-++-+|+..-+-.-.-.+|.+|+|..-
T Consensus 207 VeAVIDKDlasalLA~~i~AD~liILTdV 235 (312)
T COG0549 207 VEAVIDKDLASALLAEQIDADLLIILTDV 235 (312)
T ss_pred eeEEEccHHHHHHHHHHhcCCEEEEEecc
Confidence 45677788864444445579999999864
No 117
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=39.94 E-value=25 Score=30.52 Aligned_cols=38 Identities=29% Similarity=0.558 Sum_probs=28.8
Q ss_pred HHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchh
Q 027323 109 AEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNS 158 (225)
Q Consensus 109 ~~mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~ 158 (225)
.-+++.||++|.+.+..|= |++ .++||+++++.. ||+.
T Consensus 194 ~~Ll~~s~~VvtinStvGl-----EAl------l~gkpVi~~G~~-~Y~~ 231 (269)
T PF05159_consen 194 YELLEQSDAVVTINSTVGL-----EAL------LHGKPVIVFGRA-FYAG 231 (269)
T ss_pred HHHHHhCCEEEEECCHHHH-----HHH------HcCCceEEecCc-ccCC
Confidence 3567999999999998874 444 258999999864 6653
No 118
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=39.91 E-value=29 Score=31.40 Aligned_cols=31 Identities=35% Similarity=0.551 Sum_probs=25.4
Q ss_pred HHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHh
Q 027323 40 IQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYD 72 (225)
Q Consensus 40 ~~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~ 72 (225)
..|+|+|..+...||-+|| |+=+.++-|+++
T Consensus 5 ~rl~r~l~~~~~gLvL~GG--G~RG~ahiGvL~ 35 (306)
T cd07225 5 SRLARVLTGNSIALVLGGG--GARGCAHIGVIK 35 (306)
T ss_pred HHHHHHhcCCCEEEEECCh--HHHHHHHHHHHH
Confidence 4689999999999999886 777777777765
No 119
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=39.90 E-value=1.4e+02 Score=22.12 Aligned_cols=70 Identities=21% Similarity=0.225 Sum_probs=36.5
Q ss_pred HHHHHHHhcCeEEEec-CCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEEcCC
Q 027323 107 RKAEMARQADAFIALP-GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT 185 (225)
Q Consensus 107 Rk~~mv~~sDa~Ivlp-GG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d 185 (225)
....++..+|+.|..- =+.++-.-+++++. .++|++..+. + +..+ ....... +.+.+|
T Consensus 63 e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~------~G~pvi~~~~-~-~~~~------------~~~~~~~-~~~~~~ 121 (135)
T PF13692_consen 63 ELPEILAAADVGLIPSRFNEGFPNKLLEAMA------AGKPVIASDN-G-AEGI------------VEEDGCG-VLVAND 121 (135)
T ss_dssp HHHHHHHC-SEEEE-BSS-SCC-HHHHHHHC------TT--EEEEHH-H-CHCH------------S---SEE-EE-TT-
T ss_pred HHHHHHHhCCEEEEEeeCCCcCcHHHHHHHH------hCCCEEECCc-c-hhhh------------eeecCCe-EEECCC
Confidence 3455567789777532 13355566777663 5899999764 2 2221 2122223 344999
Q ss_pred HHHHHHHHHhhc
Q 027323 186 AHELICKLEEYV 197 (225)
Q Consensus 186 ~ee~~~~l~~~~ 197 (225)
++++.+.|.+..
T Consensus 122 ~~~l~~~i~~l~ 133 (135)
T PF13692_consen 122 PEELAEAIERLL 133 (135)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998753
No 120
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=39.62 E-value=2.5e+02 Score=24.19 Aligned_cols=89 Identities=24% Similarity=0.276 Sum_probs=53.4
Q ss_pred HHHHHHHH-CCCeEEEcCCCcchHHHHHHHHHhc-CCcEEEEecCccccCCCCCCCCceEEecCCHHHHHHHHHHhcCeE
Q 027323 41 QLGKQLVE-RNIDLVYGGGSIGLMGLVSQAVYDG-GRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAF 118 (225)
Q Consensus 41 ~lG~~LA~-~g~~lVtGGG~~GlM~a~a~gA~~~-GG~viGi~P~~~~~~e~~~~~~~~~i~~~~m~~Rk~~mv~~sDa~ 118 (225)
+.-+.|++ .|..+|+|.|+.|+++-.--.=+.+ |-.+.-|-|.+- .+- ++ -|+...|.+
T Consensus 30 ~a~~~i~~~~gkv~V~G~GkSG~Igkk~Aa~L~s~G~~a~fv~p~ea-----~hg---dl-----------g~i~~~Dvv 90 (202)
T COG0794 30 RAVELILECKGKVFVTGVGKSGLIGKKFAARLASTGTPAFFVGPAEA-----LHG---DL-----------GMITPGDVV 90 (202)
T ss_pred HHHHHHHhcCCcEEEEcCChhHHHHHHHHHHHHccCCceEEecCchh-----ccC---Cc-----------cCCCCCCEE
Confidence 34444554 8999999999999997665444444 434444434322 111 11 135677888
Q ss_pred EEecCCCCcHHHHHHHHHHHHhCCCCCceEEEe
Q 027323 119 IALPGGYGTLEELLEVITWAQLGIHDKPVGLLN 151 (225)
Q Consensus 119 IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~ 151 (225)
|++.|+ |--.|+..+.... ...+.|++.+-
T Consensus 91 iaiS~S-GeT~el~~~~~~a--K~~g~~liaiT 120 (202)
T COG0794 91 IAISGS-GETKELLNLAPKA--KRLGAKLIAIT 120 (202)
T ss_pred EEEeCC-CcHHHHHHHHHHH--HHcCCcEEEEe
Confidence 888765 5557777666433 23457777764
No 121
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=39.53 E-value=65 Score=24.92 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027323 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (225)
Q Consensus 19 ~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lV 54 (225)
|.|+|++ +..+.... ..|..|++.||+.|..++
T Consensus 1 k~i~v~s-~~~g~G~t--~~a~~lA~~la~~~~~Vl 33 (157)
T PF13614_consen 1 KVIAVWS-PKGGVGKT--TLALNLAAALARKGKKVL 33 (157)
T ss_dssp EEEEEEE-SSTTSSHH--HHHHHHHHHHHHTTT-EE
T ss_pred CEEEEEC-CCCCCCHH--HHHHHHHHHHHhcCCCeE
Confidence 4688884 44444443 467899999999886543
No 122
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=39.35 E-value=34 Score=30.07 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=20.3
Q ss_pred eEEEcCCCcchHHHHHHHHHhcCCcEEE
Q 027323 52 DLVYGGGSIGLMGLVSQAVYDGGRHVLG 79 (225)
Q Consensus 52 ~lVtGGG~~GlM~a~a~gA~~~GG~viG 79 (225)
.|+|||+. |+=.+.++-..+.|-.||=
T Consensus 8 iLITGG~s-GIGl~lak~f~elgN~VIi 34 (245)
T COG3967 8 ILITGGAS-GIGLALAKRFLELGNTVII 34 (245)
T ss_pred EEEeCCcc-hhhHHHHHHHHHhCCEEEE
Confidence 46677775 8888888888888877664
No 123
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=39.14 E-value=49 Score=29.52 Aligned_cols=59 Identities=25% Similarity=0.324 Sum_probs=39.2
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCc--EEEEe
Q 027323 17 RFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRH--VLGVI 81 (225)
Q Consensus 17 ~~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG~--viGi~ 81 (225)
..+....|-||-. |+ ..++++++.|-.+|..+|+.-.. +.-..+.+.|.+.|.. +||+-
T Consensus 160 ~i~v~~~~~gs~~--D~---~~~~~~a~~li~~GaDvI~~~ag-~~~~gv~~aa~e~g~~~~~IG~d 220 (306)
T PF02608_consen 160 DIKVNVSYTGSFN--DP---AKAKEAAEALIDQGADVIFPVAG-GSGQGVIQAAKEAGVYGYVIGVD 220 (306)
T ss_dssp T-EEEEEE-SSSS---H---HHHHHHHHHHHHTT-SEEEEE-C-CCHHHHHHHHHHHTHETEEEEEE
T ss_pred CceEEEEEcCCcC--ch---HHHHHHHHHHhhcCCeEEEECCC-CCchHHHHHHHHcCCceEEEEec
Confidence 3344455555432 33 46788999999999999998432 5566777888888887 99984
No 124
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=38.91 E-value=36 Score=26.15 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=19.1
Q ss_pred HHHhcCe--EEEecCCCCcHHHHHHHH
Q 027323 111 MARQADA--FIALPGGYGTLEELLEVI 135 (225)
Q Consensus 111 mv~~sDa--~IvlpGG~GTL~El~~~~ 135 (225)
.....+. .|++-||=||++|+...+
T Consensus 48 ~~~~~~~~~~ivv~GGDGTl~~vv~~l 74 (130)
T PF00781_consen 48 ILALDDYPDVIVVVGGDGTLNEVVNGL 74 (130)
T ss_dssp HHHHTTS-SEEEEEESHHHHHHHHHHH
T ss_pred HHhhccCccEEEEEcCccHHHHHHHHH
Confidence 3444544 888899999999998766
No 125
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=38.59 E-value=1.2e+02 Score=26.15 Aligned_cols=66 Identities=23% Similarity=0.359 Sum_probs=40.8
Q ss_pred HHHHHhcCeEEEecC--CCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEEcCCH
Q 027323 109 AEMARQADAFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTA 186 (225)
Q Consensus 109 ~~mv~~sDa~IvlpG--G~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ 186 (225)
..+...||++|.-.. |+|. =++|+++ .++|+|..+.++. .++ +.+ ...++-.+|+
T Consensus 257 ~~~~~~ad~~v~~s~~e~~~~--~~~Ea~a------~G~PvI~~~~~~~----~e~---------i~~--~g~~~~~~~~ 313 (360)
T cd04951 257 AAYYNAADLFVLSSAWEGFGL--VVAEAMA------CELPVVATDAGGV----REV---------VGD--SGLIVPISDP 313 (360)
T ss_pred HHHHHhhceEEecccccCCCh--HHHHHHH------cCCCEEEecCCCh----hhE---------ecC--CceEeCCCCH
Confidence 345788998776443 3332 3666664 4799998775432 121 111 2345567899
Q ss_pred HHHHHHHHhhc
Q 027323 187 HELICKLEEYV 197 (225)
Q Consensus 187 ee~~~~l~~~~ 197 (225)
+++.+.+.+..
T Consensus 314 ~~~~~~i~~ll 324 (360)
T cd04951 314 EALANKIDEIL 324 (360)
T ss_pred HHHHHHHHHHH
Confidence 99999888875
No 126
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=38.56 E-value=3.5e+02 Score=25.66 Aligned_cols=151 Identities=17% Similarity=0.203 Sum_probs=76.4
Q ss_pred hcCcceEEEEcCCCCC-CChHHHHHHHHHHHHHHH---CCCeEEEcCCC-cchHHHHHHHHHh-c-CC----cEEEEecC
Q 027323 15 KSRFKRVCVFCGSSPG-KSPSYQLAAIQLGKQLVE---RNIDLVYGGGS-IGLMGLVSQAVYD-G-GR----HVLGVIPK 83 (225)
Q Consensus 15 ~~~~~~I~VfggS~~~-~~~~~~~~A~~lG~~LA~---~g~~lVtGGG~-~GlM~a~a~gA~~-~-GG----~viGi~P~ 83 (225)
-+|..++-|-...... ++..| --||..+.+ .++.+++|... ...-..=+-+|.- . |+ ++.||+|+
T Consensus 178 EnR~~~~~v~v~~~~~~d~~~~----~~LG~~iG~~~~~~IPvi~g~~~~p~~d~lK~lgAA~Atsgs~~m~Hi~GvTPE 253 (400)
T PF04412_consen 178 ENRRATILVEVEAPPEEDDADW----GLLGYLIGKKVGDRIPVITGLERRPSEDDLKALGAAMATSGSVAMFHIVGVTPE 253 (400)
T ss_pred cCCCCeEEEEeCCCCCcCcchH----HHHHHHHHHhcCCCcCeEeCCCCCCCHHHHHHHhhhhhcccceeeEEEeCCCCC
Confidence 4566677776544433 33334 357777665 48999999854 2333333333322 2 33 67899997
Q ss_pred ccccCCCCCCCCceEEec--CCHH-HHHHHH-HHhcCe-EEEecCCCCcHHHHHHHHHHHHhCC--CCCceEEEecCccc
Q 027323 84 TLMPREITGDTVGEVKAV--SGMH-QRKAEM-ARQADA-FIALPGGYGTLEELLEVITWAQLGI--HDKPVGLLNVDGYY 156 (225)
Q Consensus 84 ~~~~~e~~~~~~~~~i~~--~~m~-~Rk~~m-v~~sDa-~IvlpGG~GTL~El~~~~~~~qlg~--~~kPiill~~~g~w 156 (225)
.-.....-... .+.+.. .++. .++.+- ....+. +|+|+-=-=|++|+.++..+..=.. .++|+++.-....+
T Consensus 254 a~~~~~a~~~~-~e~i~i~~~dl~~~~~~l~~~~~~~~D~V~lGcPH~S~~El~~ia~ll~gr~~~~~~~~~i~t~~~v~ 332 (400)
T PF04412_consen 254 APTLEAAFGGK-AERITITDADLEEVYEELNTAGDEKVDLVALGCPHLSLEELREIAELLEGRKVHPNVPLWITTSRAVY 332 (400)
T ss_pred CCcchhhhcCC-ceEEEeCHHHHHHHHHHhccCCCCCCCEEEECCCCCCHHHHHHHHHHHhCCCCCCCceEEEECCHHHH
Confidence 54221111111 233332 2332 222220 111233 5555555679999999876654323 36788887543334
Q ss_pred hhHHH--HHHHHHHcC
Q 027323 157 NSLLS--FIDKAVDEG 170 (225)
Q Consensus 157 ~~l~~--~l~~~~~~g 170 (225)
..... +++.+.+.|
T Consensus 333 ~~a~~~G~~~~le~~G 348 (400)
T PF04412_consen 333 ELAERMGYVERLEKAG 348 (400)
T ss_pred HHHHhCCHHHHHHHcC
Confidence 43333 334444443
No 127
>PRK13057 putative lipid kinase; Reviewed
Probab=38.47 E-value=68 Score=28.20 Aligned_cols=42 Identities=19% Similarity=0.403 Sum_probs=27.9
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCcchHHHHHHHHHhcCCcEEEEecC
Q 027323 39 AIQLGKQLVERNI-DLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPK 83 (225)
Q Consensus 39 A~~lG~~LA~~g~-~lVtGGG~~GlM~a~a~gA~~~GG~viGi~P~ 83 (225)
|.++.+.+ .+++ .|+..||. |-...++.+.... +..+||+|.
T Consensus 40 a~~~~~~~-~~~~d~iiv~GGD-GTv~~v~~~l~~~-~~~lgiiP~ 82 (287)
T PRK13057 40 LSEVIEAY-ADGVDLVIVGGGD-GTLNAAAPALVET-GLPLGILPL 82 (287)
T ss_pred HHHHHHHH-HcCCCEEEEECch-HHHHHHHHHHhcC-CCcEEEECC
Confidence 34555553 3443 44555555 9999999988754 467999994
No 128
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=38.37 E-value=1.8e+02 Score=25.92 Aligned_cols=74 Identities=15% Similarity=0.271 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCeEEEecC--CCCcHHHHHHHHHHHHhCCCCCceEEEe-cCccchhHHHHHHHHHHcCCCCcccccceE
Q 027323 105 HQRKAEMARQADAFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLN-VDGYYNSLLSFIDKAVDEGFIAPAARYIIV 181 (225)
Q Consensus 105 ~~Rk~~mv~~sDa~IvlpG--G~GTL~El~~~~~~~qlg~~~kPiill~-~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~ 181 (225)
.+...-+...+|++|.-.- |+|. =+.|+++ .++||+..+ .+| ..++ +. +.....++
T Consensus 248 ~~~~~~~~~~~d~~v~~s~~Egf~~--~~lEAma------~G~Pvv~s~~~~g-~~ei-------v~-----~~~~G~lv 306 (359)
T PRK09922 248 WEVVQQKIKNVSALLLTSKFEGFPM--TLLEAMS------YGIPCISSDCMSG-PRDI-------IK-----PGLNGELY 306 (359)
T ss_pred HHHHHHHHhcCcEEEECCcccCcCh--HHHHHHH------cCCCEEEeCCCCC-hHHH-------cc-----CCCceEEE
Confidence 3444445567898885432 3332 3556664 589999988 544 2222 21 12223345
Q ss_pred EcCCHHHHHHHHHhhcCC
Q 027323 182 SAQTAHELICKLEEYVPK 199 (225)
Q Consensus 182 ~~~d~ee~~~~l~~~~~~ 199 (225)
-.+|++++.+.|.+....
T Consensus 307 ~~~d~~~la~~i~~l~~~ 324 (359)
T PRK09922 307 TPGNIDEFVGKLNKVISG 324 (359)
T ss_pred CCCCHHHHHHHHHHHHhC
Confidence 568999999999987644
No 129
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=38.32 E-value=1.4e+02 Score=27.10 Aligned_cols=72 Identities=15% Similarity=0.095 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCeEEEe--cCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEEc
Q 027323 106 QRKAEMARQADAFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 183 (225)
Q Consensus 106 ~Rk~~mv~~sDa~Ivl--pGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~ 183 (225)
+....+...||++|.. |.|+|. =+.|+++ .++|||..+..|. .++ +.+.....++-.
T Consensus 292 ~~~~~~l~~adv~v~~s~~e~~~~--~llEAmA------~G~PVIas~~~g~----~e~---------i~~~~~G~lv~~ 350 (396)
T cd03818 292 DQYLALLQVSDVHVYLTYPFVLSW--SLLEAMA------CGCLVVGSDTAPV----REV---------ITDGENGLLVDF 350 (396)
T ss_pred HHHHHHHHhCcEEEEcCcccccch--HHHHHHH------CCCCEEEcCCCCc----hhh---------cccCCceEEcCC
Confidence 3344566889998864 444442 2566664 5899999876542 222 112222333445
Q ss_pred CCHHHHHHHHHhhcC
Q 027323 184 QTAHELICKLEEYVP 198 (225)
Q Consensus 184 ~d~ee~~~~l~~~~~ 198 (225)
+|++++.+.|.+...
T Consensus 351 ~d~~~la~~i~~ll~ 365 (396)
T cd03818 351 FDPDALAAAVIELLD 365 (396)
T ss_pred CCHHHHHHHHHHHHh
Confidence 688888888877653
No 130
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=38.25 E-value=1.1e+02 Score=27.40 Aligned_cols=71 Identities=18% Similarity=0.273 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCeEEEe--cCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEEc
Q 027323 106 QRKAEMARQADAFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 183 (225)
Q Consensus 106 ~Rk~~mv~~sDa~Ivl--pGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~ 183 (225)
+....++..||++|.- ..|+|.. +.|+++ .++||+..+.+| ...+ +.++ ....++-.
T Consensus 294 ~~~~~~l~~ad~~v~ps~~E~~g~~--~lEAma------~G~Pvi~~~~~~-~~e~-------i~~~-----~~g~~~~~ 352 (405)
T TIGR03449 294 EELVHVYRAADVVAVPSYNESFGLV--AMEAQA------CGTPVVAARVGG-LPVA-------VADG-----ETGLLVDG 352 (405)
T ss_pred HHHHHHHHhCCEEEECCCCCCcChH--HHHHHH------cCCCEEEecCCC-cHhh-------hccC-----CceEECCC
Confidence 4455677899988763 3566652 666664 479999987654 2221 1111 11112223
Q ss_pred CCHHHHHHHHHhhc
Q 027323 184 QTAHELICKLEEYV 197 (225)
Q Consensus 184 ~d~ee~~~~l~~~~ 197 (225)
+|++++.+.|.+..
T Consensus 353 ~d~~~la~~i~~~l 366 (405)
T TIGR03449 353 HDPADWADALARLL 366 (405)
T ss_pred CCHHHHHHHHHHHH
Confidence 58888887777654
No 131
>PRK06443 chorismate mutase; Validated
Probab=38.18 E-value=55 Score=27.66 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCcEEE
Q 027323 34 SYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLG 79 (225)
Q Consensus 34 ~~~~~A~~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG~viG 79 (225)
.|...|+.||..+...||.++- . -+....-.|+..+||+++-
T Consensus 91 ~y~~~~~sl~~~~~~~g~~v~i---~-~~~~~~~~~~~~~~~~~~~ 132 (177)
T PRK06443 91 DYDSLILSLGLILSRPGIEIYI---E-DNPDSIEEGCSKAGGHVVI 132 (177)
T ss_pred chHHHHHHHHHHHhcCCcEEEe---c-cCchHHHHhhhhcCCeEec
Confidence 3788999999999999999882 2 3778888999999998753
No 132
>PRK06703 flavodoxin; Provisional
Probab=38.08 E-value=85 Score=24.63 Aligned_cols=14 Identities=7% Similarity=0.306 Sum_probs=6.8
Q ss_pred HHHHHHhcCCcEEE
Q 027323 66 VSQAVYDGGRHVLG 79 (225)
Q Consensus 66 ~a~gA~~~GG~viG 79 (225)
+.+-..+.|..+++
T Consensus 105 l~~~l~~~G~~~~~ 118 (151)
T PRK06703 105 FEERLVERGAELVQ 118 (151)
T ss_pred HHHHHHHCCCEEcc
Confidence 33333445665554
No 133
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=38.01 E-value=34 Score=30.02 Aligned_cols=32 Identities=16% Similarity=0.086 Sum_probs=25.6
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHH
Q 027323 17 RFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVE 48 (225)
Q Consensus 17 ~~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~ 48 (225)
+.++|||||||=.+.+--+...|+++.+.+.-
T Consensus 20 ~~~~IgifGGSFdPiH~GHl~ia~~~~~~l~l 51 (243)
T PRK06973 20 RPRRIGILGGTFDPIHDGHLALARRFADVLDL 51 (243)
T ss_pred CCceEEEECCCCCCCcHHHHHHHHHHHHHcCC
Confidence 44579999999998888888888887777653
No 134
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=37.95 E-value=2e+02 Score=25.29 Aligned_cols=32 Identities=31% Similarity=0.455 Sum_probs=22.3
Q ss_pred EEEecCCCCcHHHHHHHHHHHHhCC-CCCceEEEe
Q 027323 118 FIALPGGYGTLEELLEVITWAQLGI-HDKPVGLLN 151 (225)
Q Consensus 118 ~IvlpGG~GTL~El~~~~~~~qlg~-~~kPiill~ 151 (225)
.|+.-||=||++|+...+. ..+. .+.|+.++-
T Consensus 55 ~vv~~GGDGTi~ev~ngl~--~~~~~~~~~lgiiP 87 (293)
T TIGR03702 55 TVIAGGGDGTLREVATALA--QIRDDAAPALGLLP 87 (293)
T ss_pred EEEEEcCChHHHHHHHHHH--hhCCCCCCcEEEEc
Confidence 6778899999999997772 2121 235787773
No 135
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=37.70 E-value=76 Score=24.55 Aligned_cols=39 Identities=26% Similarity=0.413 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHH----CCCeEE-E--cC-CCcchHHHHHHHHHhcCC
Q 027323 37 LAAIQLGKQLVE----RNIDLV-Y--GG-GSIGLMGLVSQAVYDGGR 75 (225)
Q Consensus 37 ~~A~~lG~~LA~----~g~~lV-t--GG-G~~GlM~a~a~gA~~~GG 75 (225)
+.|+.+|+.||+ .|+.=| + || -+-|-+.|+++||.++|-
T Consensus 61 ~aA~~vG~lla~ra~~~gi~~vvfDrgg~~yhGrV~a~a~~are~GL 107 (109)
T CHL00139 61 DASKLVGQKLAKKSLKKGITKVVFDRGGKLYHGRIKALAEAAREAGL 107 (109)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEcCCCCccchHHHHHHHHHHHhCC
Confidence 578888888886 454433 2 22 236899999999999873
No 136
>PRK13057 putative lipid kinase; Reviewed
Probab=37.51 E-value=79 Score=27.81 Aligned_cols=32 Identities=28% Similarity=0.517 Sum_probs=23.1
Q ss_pred hcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEe
Q 027323 114 QADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN 151 (225)
Q Consensus 114 ~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~ 151 (225)
..| .|+.-||=||++|+...+. ..+.|+.++-
T Consensus 50 ~~d-~iiv~GGDGTv~~v~~~l~-----~~~~~lgiiP 81 (287)
T PRK13057 50 GVD-LVIVGGGDGTLNAAAPALV-----ETGLPLGILP 81 (287)
T ss_pred CCC-EEEEECchHHHHHHHHHHh-----cCCCcEEEEC
Confidence 345 5678899999999987662 1357887773
No 137
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=37.30 E-value=44 Score=25.90 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=19.3
Q ss_pred eEEEcCCCcchHHHHHHHHHhcCCcEEEEe
Q 027323 52 DLVYGGGSIGLMGLVSQAVYDGGRHVLGVI 81 (225)
Q Consensus 52 ~lVtGGG~~GlM~a~a~gA~~~GG~viGi~ 81 (225)
.||+||+. |+=.++++...+.|+.++.++
T Consensus 3 ~lItGa~~-giG~~~a~~l~~~g~~~v~~~ 31 (167)
T PF00106_consen 3 VLITGASS-GIGRALARALARRGARVVILT 31 (167)
T ss_dssp EEEETTTS-HHHHHHHHHHHHTTTEEEEEE
T ss_pred EEEECCCC-HHHHHHHHHHHhcCceEEEEe
Confidence 56777765 777777777777766554443
No 138
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=37.10 E-value=60 Score=27.40 Aligned_cols=37 Identities=16% Similarity=0.303 Sum_probs=27.2
Q ss_pred cceEEEEcCCCCCC-ChHHHHHHHHHHHHHHHCCCeEE
Q 027323 18 FKRVCVFCGSSPGK-SPSYQLAAIQLGKQLVERNIDLV 54 (225)
Q Consensus 18 ~~~I~VfggS~~~~-~~~~~~~A~~lG~~LA~~g~~lV 54 (225)
|++|+|+|.-..++ ---+...+++|+..|+++|+.+.
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~ 38 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVT 38 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEE
Confidence 67899995433433 23567889999999999988753
No 139
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=36.82 E-value=36 Score=31.86 Aligned_cols=29 Identities=28% Similarity=0.453 Sum_probs=18.0
Q ss_pred eEEEcCCCcchHHHHHHHHHhcCCcEEEEec
Q 027323 52 DLVYGGGSIGLMGLVSQAVYDGGRHVLGVIP 82 (225)
Q Consensus 52 ~lVtGGG~~GlM~a~a~gA~~~GG~viGi~P 82 (225)
.||.|||+.|++.|++ |.++|-+|+=|-+
T Consensus 2 VVVvGgG~aG~~AAi~--AAr~G~~VlLiE~ 30 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIA--AARAGAKVLLIEK 30 (428)
T ss_dssp EEEE--SHHHHHHHHH--HHHTTS-EEEE-S
T ss_pred EEEECccHHHHHHHHH--HHHCCCEEEEEEC
Confidence 4789999988887664 4566777777643
No 140
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=36.70 E-value=93 Score=27.24 Aligned_cols=37 Identities=24% Similarity=0.457 Sum_probs=25.3
Q ss_pred HHHCCC-eEEEcCCCcchHHHHHHHHHhcCC-cEEEEecC
Q 027323 46 LVERNI-DLVYGGGSIGLMGLVSQAVYDGGR-HVLGVIPK 83 (225)
Q Consensus 46 LA~~g~-~lVtGGG~~GlM~a~a~gA~~~GG-~viGi~P~ 83 (225)
.++.++ .||.-||. |-...++.+...... ..+||+|.
T Consensus 53 ~~~~~~d~ivv~GGD-GTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 53 ARKFGVDTVIAGGGD-GTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred HHhcCCCEEEEECCC-ChHHHHHHHHhcCCCCCcEEEEcC
Confidence 334443 45555665 999999999876433 47999984
No 141
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=36.52 E-value=94 Score=26.93 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCcEEEEe
Q 027323 37 LAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVI 81 (225)
Q Consensus 37 ~~A~~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi~ 81 (225)
+.++++++.|-.+|..+|+..+ .| ..+.+.|.+.|..+||+-
T Consensus 166 ~~a~~~a~~l~~~G~DvI~~~~-~~--~g~~~aa~~~g~~~IG~d 207 (258)
T cd06353 166 AKEKEAALALIDQGADVIYQHT-DS--PGVIQAAEEKGVYAIGYV 207 (258)
T ss_pred HHHHHHHHHHHHCCCcEEEecC-CC--hHHHHHHHHhCCEEEeec
Confidence 3456777778889999998885 23 245667778899999983
No 142
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=36.38 E-value=75 Score=24.40 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=22.3
Q ss_pred eEEEcCCCcchHHHHHHHHHhcCC----cEEEEecC
Q 027323 52 DLVYGGGSIGLMGLVSQAVYDGGR----HVLGVIPK 83 (225)
Q Consensus 52 ~lVtGGG~~GlM~a~a~gA~~~GG----~viGi~P~ 83 (225)
.||..||. |....+..+...... ..+||+|.
T Consensus 52 ~vvv~GGD-GTi~~vvn~l~~~~~~~~~~plgiiP~ 86 (124)
T smart00046 52 RVLVCGGD-GTVGWVLNALDKRELPLPEPPVAVLPL 86 (124)
T ss_pred EEEEEccc-cHHHHHHHHHHhcccccCCCcEEEeCC
Confidence 55555665 988888888876654 46899885
No 143
>PRK05593 rplR 50S ribosomal protein L18; Reviewed
Probab=36.28 E-value=83 Score=24.62 Aligned_cols=39 Identities=31% Similarity=0.423 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHH----CCCeEE---EcC-CCcchHHHHHHHHHhcCC
Q 027323 37 LAAIQLGKQLVE----RNIDLV---YGG-GSIGLMGLVSQAVYDGGR 75 (225)
Q Consensus 37 ~~A~~lG~~LA~----~g~~lV---tGG-G~~GlM~a~a~gA~~~GG 75 (225)
+.|+.+|+.||+ .|+.=| -|| -+.|-+.|+++||.++|-
T Consensus 69 ~aa~~vG~~la~ra~~~gi~~vvfDrg~~~yhGrV~a~a~~are~Gl 115 (117)
T PRK05593 69 EAAKKVGKLIAERAKAKGIKQVVFDRGGYKYHGRVKALADAAREAGL 115 (117)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEcCCCCcccHHHHHHHHHHHHhCC
Confidence 457888888887 454433 132 236899999999999873
No 144
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=36.26 E-value=1.1e+02 Score=25.64 Aligned_cols=69 Identities=20% Similarity=0.324 Sum_probs=39.0
Q ss_pred HHHHHHhcCeEEEec--CCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEEcCC
Q 027323 108 KAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT 185 (225)
Q Consensus 108 k~~mv~~sDa~Ivlp--GG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d 185 (225)
...+...||++|... .|.|+ =++|++. .++|+|..+..++ . ++++ ......++-.+|
T Consensus 269 ~~~~~~~~di~i~~~~~~~~~~--~~~Ea~~------~g~pvI~~~~~~~-~---~~~~---------~~~~g~~~~~~~ 327 (374)
T cd03801 269 LPALYAAADVFVLPSLYEGFGL--VLLEAMA------AGLPVVASDVGGI-P---EVVE---------DGETGLLVPPGD 327 (374)
T ss_pred HHHHHHhcCEEEecchhccccc--hHHHHHH------cCCcEEEeCCCCh-h---HHhc---------CCcceEEeCCCC
Confidence 444567799877543 23333 2455553 4799999876433 2 2111 112233444556
Q ss_pred HHHHHHHHHhhc
Q 027323 186 AHELICKLEEYV 197 (225)
Q Consensus 186 ~ee~~~~l~~~~ 197 (225)
++++.+.|.+..
T Consensus 328 ~~~l~~~i~~~~ 339 (374)
T cd03801 328 PEALAEAILRLL 339 (374)
T ss_pred HHHHHHHHHHHH
Confidence 888888888754
No 145
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=36.21 E-value=1.9e+02 Score=26.30 Aligned_cols=72 Identities=15% Similarity=0.201 Sum_probs=42.0
Q ss_pred HHHHHHHHhcCeEEEe---cCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceE-
Q 027323 106 QRKAEMARQADAFIAL---PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIV- 181 (225)
Q Consensus 106 ~Rk~~mv~~sDa~Ivl---pGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~- 181 (225)
+....+...||++|+- ..|+|.. +.|+++ .++||+..+.+|. . ++ +. ......+.
T Consensus 268 ~~l~~~~~~aDv~v~pS~~~E~f~~~--~lEAma------~G~PVI~s~~gg~-~---Ei----v~-----~~~~G~~l~ 326 (380)
T PRK15484 268 EKMHNYYPLADLVVVPSQVEEAFCMV--AVEAMA------AGKPVLASTKGGI-T---EF----VL-----EGITGYHLA 326 (380)
T ss_pred HHHHHHHHhCCEEEeCCCCccccccH--HHHHHH------cCCCEEEeCCCCc-H---hh----cc-----cCCceEEEe
Confidence 3445567899988863 2455652 566664 5899999876543 1 21 11 11111212
Q ss_pred EcCCHHHHHHHHHhhcC
Q 027323 182 SAQTAHELICKLEEYVP 198 (225)
Q Consensus 182 ~~~d~ee~~~~l~~~~~ 198 (225)
-..|++++.+.|.+...
T Consensus 327 ~~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 327 EPMTSDSIISDINRTLA 343 (380)
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 24588888888877653
No 146
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=36.17 E-value=30 Score=32.91 Aligned_cols=27 Identities=44% Similarity=0.770 Sum_probs=19.8
Q ss_pred eEEEcCCCcchHHHHHHHHHhcCCcEEEE
Q 027323 52 DLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (225)
Q Consensus 52 ~lVtGGG~~GlM~a~a~gA~~~GG~viGi 80 (225)
.+|-|||+.|+|.|+.-+ ++|.+|+=|
T Consensus 6 viIIGgGpAGlMaA~~aa--~~G~~V~li 32 (408)
T COG2081 6 VIIIGGGPAGLMAAISAA--KAGRRVLLI 32 (408)
T ss_pred EEEECCCHHHHHHHHHHh--hcCCEEEEE
Confidence 467899999999887654 466666554
No 147
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=36.12 E-value=1.2e+02 Score=26.84 Aligned_cols=69 Identities=23% Similarity=0.329 Sum_probs=41.4
Q ss_pred HHHHHhcCeEEEe--cCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEEcCCH
Q 027323 109 AEMARQADAFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTA 186 (225)
Q Consensus 109 ~~mv~~sDa~Ivl--pGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ 186 (225)
..+...||++|.. ..|+|. =+.|+++ .++||+.-+.+|. . ++ +.+ .....++-.+|+
T Consensus 267 ~~~~~~adi~v~pS~~Eg~~~--~~lEAma------~G~Pvv~s~~~g~-~---e~----i~~-----~~~g~~~~~~d~ 325 (374)
T TIGR03088 267 PALMQALDLFVLPSLAEGISN--TILEAMA------SGLPVIATAVGGN-P---EL----VQH-----GVTGALVPPGDA 325 (374)
T ss_pred HHHHHhcCEEEeccccccCch--HHHHHHH------cCCCEEEcCCCCc-H---HH----hcC-----CCceEEeCCCCH
Confidence 3456789987743 245554 2666664 4899999876542 2 22 111 122334446789
Q ss_pred HHHHHHHHhhcC
Q 027323 187 HELICKLEEYVP 198 (225)
Q Consensus 187 ee~~~~l~~~~~ 198 (225)
+++.+.|.+...
T Consensus 326 ~~la~~i~~l~~ 337 (374)
T TIGR03088 326 VALARALQPYVS 337 (374)
T ss_pred HHHHHHHHHHHh
Confidence 988888887643
No 148
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=35.93 E-value=1.8e+02 Score=22.50 Aligned_cols=72 Identities=19% Similarity=0.340 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCeEEEecC--CCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEE
Q 027323 105 HQRKAEMARQADAFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVS 182 (225)
Q Consensus 105 ~~Rk~~mv~~sDa~IvlpG--G~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~ 182 (225)
.+....+...||++|...- |+|+ =+.|++. .++|+++.+.. .+.. .+. +.....++-
T Consensus 83 ~~~l~~~~~~~di~v~~s~~e~~~~--~~~Ea~~------~g~pvI~~~~~-~~~e-------~~~-----~~~~g~~~~ 141 (172)
T PF00534_consen 83 DDELDELYKSSDIFVSPSRNEGFGL--SLLEAMA------CGCPVIASDIG-GNNE-------IIN-----DGVNGFLFD 141 (172)
T ss_dssp HHHHHHHHHHTSEEEE-BSSBSS-H--HHHHHHH------TT-EEEEESST-HHHH-------HSG-----TTTSEEEES
T ss_pred ccccccccccceecccccccccccc--ccccccc------cccceeecccc-CCce-------eec-----cccceEEeC
Confidence 4556677788998887643 4444 4555554 47999988754 2222 121 122234555
Q ss_pred cCCHHHHHHHHHhhc
Q 027323 183 AQTAHELICKLEEYV 197 (225)
Q Consensus 183 ~~d~ee~~~~l~~~~ 197 (225)
..|++++.+.|.+..
T Consensus 142 ~~~~~~l~~~i~~~l 156 (172)
T PF00534_consen 142 PNDIEELADAIEKLL 156 (172)
T ss_dssp TTSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 667899988888764
No 149
>PRK06703 flavodoxin; Provisional
Probab=35.74 E-value=48 Score=26.09 Aligned_cols=33 Identities=12% Similarity=0.110 Sum_probs=20.8
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 027323 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL 53 (225)
Q Consensus 18 ~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~l 53 (225)
|++|.|+.+|..++.. ..|+.+++.|...|+.+
T Consensus 1 mmkv~IiY~S~tGnT~---~iA~~ia~~l~~~g~~v 33 (151)
T PRK06703 1 MAKILIAYASMSGNTE---DIADLIKVSLDAFDHEV 33 (151)
T ss_pred CCeEEEEEECCCchHH---HHHHHHHHHHHhcCCce
Confidence 3456666677776432 45777777776666553
No 150
>PRK13337 putative lipid kinase; Reviewed
Probab=35.69 E-value=1.7e+02 Score=25.92 Aligned_cols=30 Identities=27% Similarity=0.553 Sum_probs=21.4
Q ss_pred EEEecCCCCcHHHHHHHHHHHHhCCCCCceEEE
Q 027323 118 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 150 (225)
Q Consensus 118 ~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill 150 (225)
.|+.-||=||++|+...+. +.+ ...|+.++
T Consensus 60 ~vvv~GGDGTl~~vv~gl~--~~~-~~~~lgii 89 (304)
T PRK13337 60 LVIAAGGDGTLNEVVNGIA--EKE-NRPKLGII 89 (304)
T ss_pred EEEEEcCCCHHHHHHHHHh--hCC-CCCcEEEE
Confidence 6778899999999997662 111 23577776
No 151
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=35.46 E-value=1e+02 Score=29.41 Aligned_cols=87 Identities=22% Similarity=0.280 Sum_probs=45.4
Q ss_pred eEEEcCCCcchHHHHHHHHHhcCCcEEEEecCccccCCCCCCCCceEEecCCHHHHHHHHHHhcCeEEEecCCCCcHH-H
Q 027323 52 DLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLE-E 130 (225)
Q Consensus 52 ~lVtGGG~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~i~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~-E 130 (225)
.+|.|.|+.| ..++.-++..|.+|+.+-.+.....+.....+ + +.++. -.++.+|.+|...|-.++++ +
T Consensus 215 VlViG~G~IG--~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~-~---v~~l~----eal~~aDVVI~aTG~~~vI~~~ 284 (425)
T PRK05476 215 VVVAGYGDVG--KGCAQRLRGLGARVIVTEVDPICALQAAMDGF-R---VMTME----EAAELGDIFVTATGNKDVITAE 284 (425)
T ss_pred EEEECCCHHH--HHHHHHHHhCCCEEEEEcCCchhhHHHHhcCC-E---ecCHH----HHHhCCCEEEECCCCHHHHHHH
Confidence 5677877655 34666677778887776322111111111111 1 12343 22468999999887666665 3
Q ss_pred HHHHHHHHHhCCCCCceEEEecCccch
Q 027323 131 LLEVITWAQLGIHDKPVGLLNVDGYYN 157 (225)
Q Consensus 131 l~~~~~~~qlg~~~kPiill~~~g~w~ 157 (225)
.+..+ ++-.+++|.+ .++
T Consensus 285 ~~~~m--------K~GailiNvG-~~d 302 (425)
T PRK05476 285 HMEAM--------KDGAILANIG-HFD 302 (425)
T ss_pred HHhcC--------CCCCEEEEcC-CCC
Confidence 43332 3445666764 434
No 152
>PF09152 DUF1937: Domain of unknown function (DUF1937); InterPro: IPR015235 This entry is represented by Bacteriophage N15, Gp57. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a set of hypothetical bacterial and phage proteins whose exact function has not, as yet, been described. ; PDB: 1T1J_A.
Probab=35.38 E-value=40 Score=26.56 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCeEEEec--C---CCCcHHHHHHHHHHHHhCCCCCceEEE
Q 027323 106 QRKAEMARQADAFIALP--G---GYGTLEELLEVITWAQLGIHDKPVGLL 150 (225)
Q Consensus 106 ~Rk~~mv~~sDa~Ivlp--G---G~GTL~El~~~~~~~qlg~~~kPiill 150 (225)
+=.+.|++.+|++|++. | ..|+.-|+-.+.+ +++||.++
T Consensus 71 ~~d~~~L~~c~~lvV~~i~GW~~S~Gi~~Ei~~a~~------~~~~V~~~ 114 (116)
T PF09152_consen 71 DWDRPFLDACDELVVLDIPGWDDSEGIWAEIEAAEE------MGMPVFLY 114 (116)
T ss_dssp HHHHHHHHH-SEEEE---TTGGG-HHHHHHHHHHHH------TT-EEEEH
T ss_pred HHhHHHHHhcceeEEecCCCccccccHHHHHHHHHH------cCCeEEEe
Confidence 34556788999999974 5 5799999988875 47999875
No 153
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.37 E-value=1.6e+02 Score=26.54 Aligned_cols=58 Identities=21% Similarity=0.330 Sum_probs=36.5
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCC----------------------------CeEEEcCCCcchHHHHHH
Q 027323 17 RFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERN----------------------------IDLVYGGGSIGLMGLVSQ 68 (225)
Q Consensus 17 ~~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g----------------------------~~lVtGGG~~GlM~a~a~ 68 (225)
.+++|+|+. +.. +...+.+.++.++|.++| +.++-|| . |-|--+++
T Consensus 9 ~~~~i~ii~--~~~--~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGG-D-GT~L~aa~ 82 (287)
T PRK14077 9 NIKKIGLVT--RPN--VSLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLISLGG-D-GTLISLCR 82 (287)
T ss_pred cCCEEEEEe--CCc--HHHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEEECC-C-HHHHHHHH
Confidence 366799994 332 245677788888886544 2334444 5 77666666
Q ss_pred HHHhcCCcEEEE
Q 027323 69 AVYDGGRHVLGV 80 (225)
Q Consensus 69 gA~~~GG~viGi 80 (225)
-+...+-.++||
T Consensus 83 ~~~~~~~PilGI 94 (287)
T PRK14077 83 KAAEYDKFVLGI 94 (287)
T ss_pred HhcCCCCcEEEE
Confidence 555566677887
No 154
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=35.24 E-value=1.6e+02 Score=25.25 Aligned_cols=73 Identities=23% Similarity=0.302 Sum_probs=41.3
Q ss_pred HHHHHHHHhcCeEEEecCC------CCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccc
Q 027323 106 QRKAEMARQADAFIALPGG------YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYI 179 (225)
Q Consensus 106 ~Rk~~mv~~sDa~IvlpGG------~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~ 179 (225)
+...-+...||++|...-. -|.-.=++|++. .++|++..+..+. ..+ ++. .....
T Consensus 247 ~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a------~G~Pvi~~~~~~~-~~~-------i~~-----~~~g~ 307 (355)
T cd03799 247 EEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMA------MGLPVISTDVSGI-PEL-------VED-----GETGL 307 (355)
T ss_pred HHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHH------cCCCEEecCCCCc-chh-------hhC-----CCceE
Confidence 4555667889987763221 122234666664 4899998776443 211 111 11222
Q ss_pred eEEcCCHHHHHHHHHhhc
Q 027323 180 IVSAQTAHELICKLEEYV 197 (225)
Q Consensus 180 i~~~~d~ee~~~~l~~~~ 197 (225)
++-.+|++++.+.|.+..
T Consensus 308 ~~~~~~~~~l~~~i~~~~ 325 (355)
T cd03799 308 LVPPGDPEALADAIERLL 325 (355)
T ss_pred EeCCCCHHHHHHHHHHHH
Confidence 333358888888888765
No 155
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=35.20 E-value=1.3e+02 Score=28.06 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=23.8
Q ss_pred CCeEEEcCCCcchHHHHHHHHHhcCCcEEEEecC
Q 027323 50 NIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPK 83 (225)
Q Consensus 50 g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi~P~ 83 (225)
.-.+|+||.. -|-+++.+.+.......|+|+.+
T Consensus 52 E~DvVFGGee-KL~eaI~ea~e~y~P~lI~VvTT 84 (352)
T TIGR03282 52 ENDFVFGASE-KLVKVIRYAEEKFKPELIGVVGT 84 (352)
T ss_pred CCceEeCcHH-HHHHHHHHHHHhcCCCEEEEECC
Confidence 3467888865 77777777666667788888644
No 156
>TIGR00060 L18_bact ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model.
Probab=35.08 E-value=86 Score=24.50 Aligned_cols=40 Identities=30% Similarity=0.463 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHH----CCCeEE-E--cC-CCcchHHHHHHHHHhcCC
Q 027323 36 QLAAIQLGKQLVE----RNIDLV-Y--GG-GSIGLMGLVSQAVYDGGR 75 (225)
Q Consensus 36 ~~~A~~lG~~LA~----~g~~lV-t--GG-G~~GlM~a~a~gA~~~GG 75 (225)
.+.|+.+|+.||+ .|+.=| + || =+-|-+.|++++|.++|-
T Consensus 65 ~~aA~~vG~~la~ra~~~gi~~vvfDrgg~~YhGrv~A~a~~aRe~Gl 112 (114)
T TIGR00060 65 KDAAKKVGKLVAERLKEKGIKDVVFDRGGYKYHGRVAALAEAAREAGL 112 (114)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCCCcchHHHHHHHHHHHHhCC
Confidence 5778899999887 454433 2 22 126899999999999873
No 157
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=35.05 E-value=2.2e+02 Score=25.27 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=20.1
Q ss_pred CCeEEEcCCCcchHHHHHHHHHhcCCcEEEEe
Q 027323 50 NIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVI 81 (225)
Q Consensus 50 g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi~ 81 (225)
...+|+|+|..|++ +..-|+..|.+++.+.
T Consensus 168 ~~VlV~G~G~vG~~--a~~~a~~~G~~vi~~~ 197 (349)
T TIGR03201 168 DLVIVIGAGGVGGY--MVQTAKAMGAAVVAID 197 (349)
T ss_pred CEEEEECCCHHHHH--HHHHHHHcCCeEEEEc
Confidence 45677887655544 4666777788887763
No 158
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=34.98 E-value=65 Score=26.91 Aligned_cols=89 Identities=16% Similarity=0.215 Sum_probs=53.9
Q ss_pred HHHhcCeEEEecCCCCcHHHHHHHHHHHH-----hC-CCCCceEEEec--Cccchh--HHHHHHHHHHcCCC--Cccccc
Q 027323 111 MARQADAFIALPGGYGTLEELLEVITWAQ-----LG-IHDKPVGLLNV--DGYYNS--LLSFIDKAVDEGFI--APAARY 178 (225)
Q Consensus 111 mv~~sDa~IvlpGG~GTL~El~~~~~~~q-----lg-~~~kPiill~~--~g~w~~--l~~~l~~~~~~g~i--~~~~~~ 178 (225)
+...+|++||.|=..+|+.-+..=++-.. +. ..++|+++.-. ...|.. ..+-++.+.+.|+. ++....
T Consensus 74 l~~~aD~~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~g~ 153 (182)
T PRK07313 74 LAKRADLFLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKEGL 153 (182)
T ss_pred cccccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCc
Confidence 34578999999999999987753221110 11 24799998732 246664 33445556665542 222111
Q ss_pred ------ceEEcCCHHHHHHHHHhhcCC
Q 027323 179 ------IIVSAQTAHELICKLEEYVPK 199 (225)
Q Consensus 179 ------~i~~~~d~ee~~~~l~~~~~~ 199 (225)
-.--..+++|+++++.++...
T Consensus 154 la~~~~g~g~~~~~~~i~~~v~~~~~~ 180 (182)
T PRK07313 154 LACGDEGYGALADIETILETIENTLKE 180 (182)
T ss_pred cccCCccCCCCCCHHHHHHHHHHHhcc
Confidence 034467899999999987643
No 159
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=34.82 E-value=83 Score=23.37 Aligned_cols=32 Identities=25% Similarity=0.189 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCeEEEecC---CCCcHHHHHHHHH
Q 027323 105 HQRKAEMARQADAFIALPG---GYGTLEELLEVIT 136 (225)
Q Consensus 105 ~~Rk~~mv~~sDa~IvlpG---G~GTL~El~~~~~ 136 (225)
..+...++..||+++.||| .-|..-|+..+-.
T Consensus 50 m~~~l~~L~~cD~i~~l~gWe~S~GA~~E~~~A~~ 84 (92)
T PF14359_consen 50 MRICLAMLSDCDAIYMLPGWENSRGARLEHELAKK 84 (92)
T ss_pred HHHHHHHHHhCCEEEEcCCcccCcchHHHHHHHHH
Confidence 3455556679999999998 5799999987763
No 160
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=34.82 E-value=96 Score=28.03 Aligned_cols=37 Identities=30% Similarity=0.326 Sum_probs=25.4
Q ss_pred HhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEe
Q 027323 113 RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN 151 (225)
Q Consensus 113 ~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~ 151 (225)
+..|+|||+- |.-||+|....+++. +...+|||||.+
T Consensus 71 ~~~~GvVVtH-GTDTme~tA~~Ls~~-l~~l~kPVVlTG 107 (313)
T PF00710_consen 71 DDYDGVVVTH-GTDTMEETAFFLSLL-LDNLDKPVVLTG 107 (313)
T ss_dssp TTCSEEEEE---STTHHHHHHHHHHH-EES-SSEEEEE-
T ss_pred HhcCeEEEec-CchHHHHHHHHHHHH-hcCCCCCEEEeC
Confidence 4478888876 578999999888653 222379999985
No 161
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=34.76 E-value=1.9e+02 Score=25.60 Aligned_cols=60 Identities=25% Similarity=0.507 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHhCCCCCceEEEecCccchhHHH-----HHHHHHHcCCCCcccccceEEcC----CHHHHHHHHHhh
Q 027323 127 TLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLS-----FIDKAVDEGFIAPAARYIIVSAQ----TAHELICKLEEY 196 (225)
Q Consensus 127 TL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~-----~l~~~~~~g~i~~~~~~~i~~~~----d~ee~~~~l~~~ 196 (225)
|++.+++.+.-.. ..++.|++|+. ||+++.. |++.+.+.|.=. +.+.| ..+++.+.++++
T Consensus 75 ~~~~~~~~~~~~r-~~~~~p~vlm~---Y~N~i~~~G~e~F~~~~~~aGvdg------viipDLP~ee~~~~~~~~~~~ 143 (263)
T CHL00200 75 NLNKILSILSEVN-GEIKAPIVIFT---YYNPVLHYGINKFIKKISQAGVKG------LIIPDLPYEESDYLISVCNLY 143 (263)
T ss_pred CHHHHHHHHHHHh-cCCCCCEEEEe---cccHHHHhCHHHHHHHHHHcCCeE------EEecCCCHHHHHHHHHHHHHc
No 162
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=34.58 E-value=65 Score=29.21 Aligned_cols=36 Identities=17% Similarity=0.298 Sum_probs=28.2
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027323 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (225)
Q Consensus 19 ~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lV 54 (225)
++|+|.+|......+.=...|+.+.+.|.+.||.++
T Consensus 4 ~~i~vl~GG~S~E~evSl~s~~~v~~~l~~~~~~v~ 39 (343)
T PRK14568 4 IKVGILFGGCSEEHPVSVKSAIEVARNLDTEKYEPF 39 (343)
T ss_pred cEEEEEECCCCCchHHHHHhHHHHHHhhcccCCeEE
Confidence 478886666665566566788999999999999986
No 163
>PRK13054 lipid kinase; Reviewed
Probab=34.46 E-value=2.4e+02 Score=24.93 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=22.5
Q ss_pred cCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEE
Q 027323 115 ADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 150 (225)
Q Consensus 115 sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill 150 (225)
.| .|+.-||=||++|+...+.-.. ..++.|+.++
T Consensus 57 ~d-~vvv~GGDGTl~evv~~l~~~~-~~~~~~lgii 90 (300)
T PRK13054 57 VA-TVIAGGGDGTINEVATALAQLE-GDARPALGIL 90 (300)
T ss_pred CC-EEEEECCccHHHHHHHHHHhhc-cCCCCcEEEE
Confidence 45 6778899999999987763211 1123577776
No 164
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.45 E-value=2e+02 Score=26.16 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=18.5
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe
Q 027323 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNID 52 (225)
Q Consensus 18 ~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~ 52 (225)
|++|+|+. +.. .+...+.+.++.++|.++|+.
T Consensus 1 m~~igiv~--n~~-~~~~~~~~~~l~~~L~~~g~~ 32 (305)
T PRK02649 1 MPKAGIIY--NDG-KPLAVRTAEELQDKLEAAGWE 32 (305)
T ss_pred CCEEEEEE--cCC-CHHHHHHHHHHHHHHHHCCCE
Confidence 45678873 222 244456677777777665543
No 165
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=34.42 E-value=1.8e+02 Score=24.72 Aligned_cols=70 Identities=19% Similarity=0.179 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCeEEEec--C--CC-CcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccce
Q 027323 106 QRKAEMARQADAFIALP--G--GY-GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYII 180 (225)
Q Consensus 106 ~Rk~~mv~~sDa~Ivlp--G--G~-GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i 180 (225)
+....++..||++|.-. . |+ ++ +.|+++ .++||+..+..+ .+.+. ......+
T Consensus 259 ~~~~~~~~~ad~~v~ps~~e~~~~~~~---~~Ea~a------~G~PvI~~~~~~-~~~i~-------------~~~~g~~ 315 (366)
T cd03822 259 EELPELFSAADVVVLPYRSADQTQSGV---LAYAIG------FGKPVISTPVGH-AEEVL-------------DGGTGLL 315 (366)
T ss_pred HHHHHHHhhcCEEEecccccccccchH---HHHHHH------cCCCEEecCCCC-hheee-------------eCCCcEE
Confidence 44556678899877532 2 33 34 444553 479999877654 22211 1122334
Q ss_pred EEcCCHHHHHHHHHhhcC
Q 027323 181 VSAQTAHELICKLEEYVP 198 (225)
Q Consensus 181 ~~~~d~ee~~~~l~~~~~ 198 (225)
+-.+|++++.+.|.+...
T Consensus 316 ~~~~d~~~~~~~l~~l~~ 333 (366)
T cd03822 316 VPPGDPAALAEAIRRLLA 333 (366)
T ss_pred EcCCCHHHHHHHHHHHHc
Confidence 445678888888887654
No 166
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=34.41 E-value=68 Score=28.96 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=27.3
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027323 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (225)
Q Consensus 19 ~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lV 54 (225)
++|+|.+|......+.=...|+.+.+.|.+.||.++
T Consensus 4 ~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~ 39 (333)
T PRK01966 4 MRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVV 39 (333)
T ss_pred cEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEE
Confidence 468886666655555555788999999999999875
No 167
>PLN02494 adenosylhomocysteinase
Probab=34.23 E-value=1.3e+02 Score=29.20 Aligned_cols=90 Identities=13% Similarity=0.254 Sum_probs=47.7
Q ss_pred CCeEEEcCCCcchHHHHHHHHHhcCCcEEEEecCccccCCCCCCCCceEEecCCHHHHHHHHHHhcCeEEEecCCCCcH-
Q 027323 50 NIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTL- 128 (225)
Q Consensus 50 g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~i~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL- 128 (225)
.-.+|.|.|+.| ..+++-++..|.+|+.+-.+.....+.....+. +.++.+ .+..+|.||..+|..+.+
T Consensus 255 KtVvViGyG~IG--r~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~----vv~leE----al~~ADVVI~tTGt~~vI~ 324 (477)
T PLN02494 255 KVAVICGYGDVG--KGCAAAMKAAGARVIVTEIDPICALQALMEGYQ----VLTLED----VVSEADIFVTTTGNKDIIM 324 (477)
T ss_pred CEEEEECCCHHH--HHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCe----eccHHH----HHhhCCEEEECCCCccchH
Confidence 345567887666 455666777788888773321110011111111 113422 357899999988877765
Q ss_pred HHHHHHHHHHHhCCCCCceEEEecCccchh
Q 027323 129 EELLEVITWAQLGIHDKPVGLLNVDGYYNS 158 (225)
Q Consensus 129 ~El~~~~~~~qlg~~~kPiill~~~g~w~~ 158 (225)
.+.+..+ ++=-+|.|.+ .++.
T Consensus 325 ~e~L~~M--------K~GAiLiNvG-r~~~ 345 (477)
T PLN02494 325 VDHMRKM--------KNNAIVCNIG-HFDN 345 (477)
T ss_pred HHHHhcC--------CCCCEEEEcC-CCCC
Confidence 4444333 2224556664 4543
No 168
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=34.18 E-value=65 Score=28.23 Aligned_cols=37 Identities=16% Similarity=0.088 Sum_probs=26.2
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 027323 20 RVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYG 56 (225)
Q Consensus 20 ~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtG 56 (225)
+|+|.+|+.......-.+.++.+-+.|.+.||.++.=
T Consensus 6 ~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i 42 (304)
T PRK01372 6 KVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPI 42 (304)
T ss_pred EEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEE
Confidence 6888776655443333457789999999999997543
No 169
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=34.14 E-value=99 Score=25.91 Aligned_cols=81 Identities=19% Similarity=0.153 Sum_probs=43.6
Q ss_pred HHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCcEEEEecC--ccc---cCCCCCCCC-ceEE---ecCCHHHHHHHHHH
Q 027323 43 GKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPK--TLM---PREITGDTV-GEVK---AVSGMHQRKAEMAR 113 (225)
Q Consensus 43 G~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi~P~--~~~---~~e~~~~~~-~~~i---~~~~m~~Rk~~mv~ 113 (225)
-+.+...+..|-|||| =+|-.-++.++...|.||=+--+ .+. ..+...+.+ +.-. +.+-|.+|+.+..+
T Consensus 66 ~~l~~~~~~ViaTGGG--~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~Y~e 143 (172)
T COG0703 66 KELLEEDNAVIATGGG--AVLSEENRNLLKKRGIVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELLEERQPLYRE 143 (172)
T ss_pred HHHhhcCCeEEECCCc--cccCHHHHHHHHhCCeEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHHHHHHHHHHH
Confidence 3444444577778886 48888888899888877766211 111 101101111 1111 22345788888777
Q ss_pred hcCeEEEecCCC
Q 027323 114 QADAFIALPGGY 125 (225)
Q Consensus 114 ~sDa~IvlpGG~ 125 (225)
.+|.++-.....
T Consensus 144 ~a~~~~~~~~~~ 155 (172)
T COG0703 144 VADFIIDTDDRS 155 (172)
T ss_pred hCcEEecCCCCc
Confidence 766555444443
No 170
>PRK08862 short chain dehydrogenase; Provisional
Probab=34.05 E-value=2.2e+02 Score=23.86 Aligned_cols=54 Identities=6% Similarity=-0.020 Sum_probs=30.8
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCcEEEE
Q 027323 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (225)
Q Consensus 19 ~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi 80 (225)
+++.|.|+|+. ..+.+++.|+++|+.|+.-+....-.+.+.+...+.++.+..+
T Consensus 6 k~~lVtGas~G--------IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~ 59 (227)
T PRK08862 6 SIILITSAGSV--------LGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSF 59 (227)
T ss_pred eEEEEECCccH--------HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEE
Confidence 46777766542 2456788888889987765544333333344444445554443
No 171
>PRK12359 flavodoxin FldB; Provisional
Probab=33.93 E-value=1e+02 Score=25.52 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHCCCeEE
Q 027323 35 YQLAAIQLGKQLVERNIDLV 54 (225)
Q Consensus 35 ~~~~A~~lG~~LA~~g~~lV 54 (225)
|.+.+..|-+.|.+.|..+|
T Consensus 97 f~~a~~~l~~~l~~~Ga~iv 116 (172)
T PRK12359 97 FLDALGMLHDKLAPKGVKFV 116 (172)
T ss_pred HHHHHHHHHHHHHhCCCeEE
Confidence 44444445555555555544
No 172
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=33.84 E-value=1.5e+02 Score=25.34 Aligned_cols=108 Identities=17% Similarity=0.158 Sum_probs=56.9
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE--EcCCCcchHHHHHHHHHhcCCcEEEEecCccccCC--CCCC
Q 027323 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV--YGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPRE--ITGD 93 (225)
Q Consensus 18 ~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lV--tGGG~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e--~~~~ 93 (225)
.+.|.|+=+ .++ +.+.++++.|.+.|+.++ |=-.+ +..+++.+-..+.....||.-- .+.+.+ ...+
T Consensus 8 ~~liaVlr~----~~~---e~a~~~~~al~~~Gi~~iEit~~t~-~a~~~i~~l~~~~~~~~vGAGT-Vl~~~~a~~a~~ 78 (204)
T TIGR01182 8 AKIVPVIRI----DDV---DDALPLAKALIEGGLRVLEVTLRTP-VALDAIRLLRKEVPDALIGAGT-VLNPEQLRQAVD 78 (204)
T ss_pred CCEEEEEec----CCH---HHHHHHHHHHHHcCCCEEEEeCCCc-cHHHHHHHHHHHCCCCEEEEEe-CCCHHHHHHHHH
Confidence 346777722 122 456788888888887764 22224 6666666655555556677621 111100 0001
Q ss_pred CCceEEecCCHHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHH
Q 027323 94 TVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVIT 136 (225)
Q Consensus 94 ~~~~~i~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~El~~~~~ 136 (225)
-=.+.++.+++.. ..+-...-..+..+| |.-|..|+..++.
T Consensus 79 aGA~FivsP~~~~-~v~~~~~~~~i~~iP-G~~TptEi~~A~~ 119 (204)
T TIGR01182 79 AGAQFIVSPGLTP-ELAKHAQDHGIPIIP-GVATPSEIMLALE 119 (204)
T ss_pred cCCCEEECCCCCH-HHHHHHHHcCCcEEC-CCCCHHHHHHHHH
Confidence 1124555555532 222222233567777 6778888888874
No 173
>PRK09271 flavodoxin; Provisional
Probab=33.69 E-value=55 Score=26.28 Aligned_cols=31 Identities=16% Similarity=0.246 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 027323 20 RVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL 53 (225)
Q Consensus 20 ~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~l 53 (225)
+|.|+.+|..++. .+.|+.+++.|.+.|+.+
T Consensus 2 kv~IvY~S~tGnT---e~~A~~ia~~l~~~g~~v 32 (160)
T PRK09271 2 RILLAYASLSGNT---REVAREIEERCEEAGHEV 32 (160)
T ss_pred eEEEEEEcCCchH---HHHHHHHHHHHHhCCCee
Confidence 5666667777643 246777777777776654
No 174
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=33.65 E-value=3e+02 Score=25.37 Aligned_cols=72 Identities=17% Similarity=0.240 Sum_probs=42.0
Q ss_pred HHHHHHHHhcCeEEEe-cC--CCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEE
Q 027323 106 QRKAEMARQADAFIAL-PG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVS 182 (225)
Q Consensus 106 ~Rk~~mv~~sDa~Ivl-pG--G~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~ 182 (225)
+....+...||++|.+ +. |.|--.-++|+++ .++||+..+.+| ..+ +++++ ....+
T Consensus 306 ~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama------~G~PVI~s~~~~----~~e----iv~~~-----~~G~l-- 364 (415)
T cd03816 306 EDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFG------CGLPVCALDFKC----IDE----LVKHG-----ENGLV-- 364 (415)
T ss_pred HHHHHHHHhCCEEEEccccccccCCcHHHHHHHH------cCCCEEEeCCCC----HHH----HhcCC-----CCEEE--
Confidence 4445567899999853 22 2333345667664 589999977643 222 22221 11222
Q ss_pred cCCHHHHHHHHHhhcC
Q 027323 183 AQTAHELICKLEEYVP 198 (225)
Q Consensus 183 ~~d~ee~~~~l~~~~~ 198 (225)
++|++++.+.|.+...
T Consensus 365 v~d~~~la~~i~~ll~ 380 (415)
T cd03816 365 FGDSEELAEQLIDLLS 380 (415)
T ss_pred ECCHHHHHHHHHHHHh
Confidence 3689998888887654
No 175
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=33.44 E-value=48 Score=30.25 Aligned_cols=29 Identities=34% Similarity=0.540 Sum_probs=21.5
Q ss_pred HCCCeEEEcCCCcchHHHHHHHHHhcCCcE
Q 027323 48 ERNIDLVYGGGSIGLMGLVSQAVYDGGRHV 77 (225)
Q Consensus 48 ~~g~~lVtGGG~~GlM~a~a~gA~~~GG~v 77 (225)
+.+..|+||||. |+=++.+....+.|..+
T Consensus 37 ~g~~vLITGgg~-GlGr~ialefa~rg~~~ 65 (300)
T KOG1201|consen 37 SGEIVLITGGGS-GLGRLIALEFAKRGAKL 65 (300)
T ss_pred cCCEEEEeCCCc-hHHHHHHHHHHHhCCeE
Confidence 357778888886 88888888777777643
No 176
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=33.12 E-value=72 Score=31.99 Aligned_cols=43 Identities=23% Similarity=0.426 Sum_probs=29.9
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHH
Q 027323 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGL 65 (225)
Q Consensus 19 ~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGGG~~GlM~a 65 (225)
..|+|+|||. +.|.+.|..+.+.|-+.|-..|+=.|+-+-|+.
T Consensus 547 a~i~viCssD----~~Y~~~a~~~~~al~~ag~~~v~lAG~p~~~~~ 589 (619)
T TIGR00642 547 AQVAVLCSSD----KVYAQQGLEVAKALKAAGAKALYLAGAFKEFGD 589 (619)
T ss_pred CCEEEEeCCC----cchHHHHHHHHHHHHhCCCCEEEEeCCCcchhh
Confidence 4699999763 579999999999996666544443444355554
No 177
>PRK00942 acetylglutamate kinase; Provisional
Probab=32.81 E-value=88 Score=27.61 Aligned_cols=47 Identities=21% Similarity=0.143 Sum_probs=27.6
Q ss_pred HHhhcCcce-EEEEcCCCCCCChHHHHHHHHHHHHHHHCCC--eEEEcCCC
Q 027323 12 AALKSRFKR-VCVFCGSSPGKSPSYQLAAIQLGKQLVERNI--DLVYGGGS 59 (225)
Q Consensus 12 ~~~~~~~~~-I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~--~lVtGGG~ 59 (225)
...+.+++. |--||||...+.......+..+. .|.+.|. .||.|||+
T Consensus 17 yi~~~~~~~iViK~GGs~l~~~~~~~~l~~~i~-~l~~~g~~vVlVhGgg~ 66 (283)
T PRK00942 17 YIQRFMGKTIVIKYGGNAMTDEELKEAFARDIV-LLKQVGINPVVVHGGGP 66 (283)
T ss_pred HHHHHcCCeEEEEEChHHhcCcchHHHHHHHHH-HHHHCCCCEEEEeCChH
Confidence 333444444 55588887654444444566665 4556654 67888865
No 178
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=32.77 E-value=3.8e+02 Score=24.29 Aligned_cols=98 Identities=21% Similarity=0.335 Sum_probs=59.2
Q ss_pred HHHHhcCeEEEe--------cCCCCcHHHHHHHHHHHHhCCCCCce-EE---EecCccchhHHHHHHHHHHcCCCCcccc
Q 027323 110 EMARQADAFIAL--------PGGYGTLEELLEVITWAQLGIHDKPV-GL---LNVDGYYNSLLSFIDKAVDEGFIAPAAR 177 (225)
Q Consensus 110 ~mv~~sDa~Ivl--------pGG~GTL~El~~~~~~~qlg~~~kPi-il---l~~~g~w~~l~~~l~~~~~~g~i~~~~~ 177 (225)
.++..+..+|++ |+.+||.+++-.+.. ..+....+. -| +... -=+.+.+|+++++......+...
T Consensus 113 ~i~~~~kv~v~f~D~~Q~i~~~e~~~~~~l~~~~~--~~~~~~~~~~~L~~q~R~~-~~~~~~~wI~~ll~~~~~~~~~~ 189 (352)
T PF09848_consen 113 EIIKRAKVVVFFYDENQSIRPSEIGTLENLEEIAE--NLGIEVRHFFELKTQFRCH-GSKEYIDWIDNLLDNKNISPKPF 189 (352)
T ss_pred HHHhcCCEEEEEEccccEeecccCCCHHHHHHHHH--hcCCccccCcCcCcceecC-CCHHHHHHHHHHHhccccCcccc
Confidence 345667777765 677899887666543 222211222 11 1221 13578899998887665554432
Q ss_pred ----c-ceEEcCCHHHHHHHHHhhcCCCC--C--Cccccccc
Q 027323 178 ----Y-IIVSAQTAHELICKLEEYVPKHS--G--VASNLSWE 210 (225)
Q Consensus 178 ----~-~i~~~~d~ee~~~~l~~~~~~~~--~--~~~~~~w~ 210 (225)
+ .+.+++|++++.+.|++...... + -.++..|.
T Consensus 190 ~~~~~yd~~~f~~~~~~~~~i~~k~~~~~~~rlvA~~~w~~~ 231 (352)
T PF09848_consen 190 NPDENYDFRVFDSPEEMKEAIKEKNKEGGLSRLVAGYCWPWK 231 (352)
T ss_pred ccCCceeEEEECCHHHHHHHHHHHhcccCCceEEEecccccc
Confidence 2 38999999999999998654332 1 34556666
No 179
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.63 E-value=2.5e+02 Score=25.30 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=17.6
Q ss_pred CCeEEEcCCCcchHHHHHHHHHhcCCcEEEE
Q 027323 50 NIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (225)
Q Consensus 50 g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi 80 (225)
...++.| |. |-+-.+++.....+-.++||
T Consensus 59 d~vi~~G-GD-GT~l~~~~~~~~~~~pv~gi 87 (305)
T PRK02645 59 DLAIVLG-GD-GTVLAAARHLAPHDIPILSV 87 (305)
T ss_pred CEEEEEC-Cc-HHHHHHHHHhccCCCCEEEE
Confidence 4455554 45 88888887776555444444
No 180
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=32.57 E-value=88 Score=27.53 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=25.2
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027323 20 RVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (225)
Q Consensus 20 ~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lV 54 (225)
+|+|.+|.....++.=...++.+.+.|.+.||.++
T Consensus 2 ~v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~ 36 (299)
T PRK14571 2 RVALLMGGVSREREISLRSGERVKKALEKLGYEVT 36 (299)
T ss_pred eEEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEE
Confidence 57775555444444445788999999999999764
No 181
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=32.36 E-value=2.4e+02 Score=23.50 Aligned_cols=85 Identities=26% Similarity=0.221 Sum_probs=45.5
Q ss_pred HHhcCeEEEecCCCCcHHHHHHHHHHHH-hCCCCCceEEEecCccch------hHHHHHH-HHHHcCCCCcccccceE-E
Q 027323 112 ARQADAFIALPGGYGTLEELLEVITWAQ-LGIHDKPVGLLNVDGYYN------SLLSFID-KAVDEGFIAPAARYIIV-S 182 (225)
Q Consensus 112 v~~sDa~IvlpGG~GTL~El~~~~~~~q-lg~~~kPiill~~~g~w~------~l~~~l~-~~~~~g~i~~~~~~~i~-~ 182 (225)
.+...+.|+|+||. |...+++.+.-.. .+..-+.|.+++.+.+|= .-..+++ ++.+..-|++.....+. -
T Consensus 18 ~~~~~~~i~LsgGs-tp~~~y~~L~~~~~~~i~w~~v~~~~~DEr~v~~~~~~Sn~~~~~~~l~~~~~i~~~~i~~~~~~ 96 (199)
T PF01182_consen 18 AERGRAVIALSGGS-TPKPLYQELAKLHKERIDWSRVHFFNVDERVVPPDDPDSNYRMLREHLLDPLPIPPENIHPIDGE 96 (199)
T ss_dssp HHCSSEEEEE--SC-THHHHHHHHHHHHHTCSCGGGEEEEESEEESSTTTSTTSHHHHHHHHTGGGSGGGGGGEETSSTT
T ss_pred HHCCCEEEEEcCCH-HHHHHHHHHhhhccccCChhHeEEEeCcccccCCCCCccHHHHHHHHhhccCCCCcceEEeCCCC
Confidence 45678999999995 5556776665432 122236688888877771 2333333 23333323333222222 2
Q ss_pred cCCHHHHHHHHHhhc
Q 027323 183 AQTAHELICKLEEYV 197 (225)
Q Consensus 183 ~~d~ee~~~~l~~~~ 197 (225)
.+|+++..+.+++..
T Consensus 97 ~~~~~~~~~~y~~~l 111 (199)
T PF01182_consen 97 ADDPEEAAERYEQEL 111 (199)
T ss_dssp TSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 467777777776644
No 182
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=32.35 E-value=2.1e+02 Score=26.28 Aligned_cols=64 Identities=19% Similarity=0.278 Sum_probs=38.3
Q ss_pred HHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEEcCCHHHHH
Q 027323 111 MARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELI 190 (225)
Q Consensus 111 mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~ 190 (225)
++..||.+| ||.|||. .|+.. .+.|.|-+.. |.+-.+..+ +++.|. ++.+.|++|++
T Consensus 245 Ll~~a~l~I---g~ggTMa--~EAA~------LGtPaIs~~~-g~~~~vd~~---L~~~Gl--------l~~~~~~~ei~ 301 (335)
T PF04007_consen 245 LLYYADLVI---GGGGTMA--REAAL------LGTPAISCFP-GKLLAVDKY---LIEKGL--------LYHSTDPDEIV 301 (335)
T ss_pred HHHhcCEEE---eCCcHHH--HHHHH------hCCCEEEecC-CcchhHHHH---HHHCCC--------eEecCCHHHHH
Confidence 445666554 5556754 23332 2688886543 233333343 455554 68899999999
Q ss_pred HHHHhhc
Q 027323 191 CKLEEYV 197 (225)
Q Consensus 191 ~~l~~~~ 197 (225)
+.+.+..
T Consensus 302 ~~v~~~~ 308 (335)
T PF04007_consen 302 EYVRKNL 308 (335)
T ss_pred HHHHHhh
Confidence 9887643
No 183
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=32.28 E-value=2.6e+02 Score=24.31 Aligned_cols=69 Identities=22% Similarity=0.291 Sum_probs=40.1
Q ss_pred HHHHHHhcCeEEEecC---------CCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCccccc
Q 027323 108 KAEMARQADAFIALPG---------GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARY 178 (225)
Q Consensus 108 k~~mv~~sDa~IvlpG---------G~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~ 178 (225)
...++..||++|. |. |+|+ =++|+++ .++||+.-+..+.- ++ +.+....
T Consensus 258 l~~~~~~ad~~v~-ps~~~~~~~~E~~~~--~~~EA~a------~G~PvI~s~~~~~~----e~---------i~~~~~g 315 (367)
T cd05844 258 VRELMRRARIFLQ-PSVTAPSGDAEGLPV--VLLEAQA------SGVPVVATRHGGIP----EA---------VEDGETG 315 (367)
T ss_pred HHHHHHhCCEEEE-CcccCCCCCccCCch--HHHHHHH------cCCCEEEeCCCCch----hh---------eecCCee
Confidence 3446788998765 32 2333 3666664 48999987765421 11 1111222
Q ss_pred ceEEcCCHHHHHHHHHhhcC
Q 027323 179 IIVSAQTAHELICKLEEYVP 198 (225)
Q Consensus 179 ~i~~~~d~ee~~~~l~~~~~ 198 (225)
.++-.+|++++.+.|.+...
T Consensus 316 ~~~~~~d~~~l~~~i~~l~~ 335 (367)
T cd05844 316 LLVPEGDVAALAAALGRLLA 335 (367)
T ss_pred EEECCCCHHHHHHHHHHHHc
Confidence 33335689999888887654
No 184
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=31.99 E-value=1.3e+02 Score=26.08 Aligned_cols=70 Identities=13% Similarity=0.104 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEEcC
Q 027323 105 HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQ 184 (225)
Q Consensus 105 ~~Rk~~mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 184 (225)
..+....++.+|.+||++=. ++ +.-+..+...-..+.|++++|.+.- .+ +......+++..
T Consensus 166 ~~~~~~~~~~aDlllvvGTS-l~---V~pa~~l~~~~~~~~~~v~iN~~~~--------------~~-~~~~~~d~~~~~ 226 (235)
T cd01408 166 FSHMEEDKEEADLLIVIGTS-LK---VAPFASLPSRVPSEVPRVLINREPV--------------GH-LGKRPFDVALLG 226 (235)
T ss_pred HHHHHHHHhcCCEEEEECCC-Ce---eccHHHHHHHHhCCCcEEEEeCCCC--------------CC-CCCCCcCEEEeC
Confidence 45555667889988886422 22 2222222221124689999997521 00 000112367788
Q ss_pred CHHHHHHHH
Q 027323 185 TAHELICKL 193 (225)
Q Consensus 185 d~ee~~~~l 193 (225)
+.+|++..|
T Consensus 227 ~~~~~l~~~ 235 (235)
T cd01408 227 DCDDGVREL 235 (235)
T ss_pred CHHHHHHhC
Confidence 888887654
No 185
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=31.99 E-value=97 Score=24.03 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCeEEE-ecCCCCcHHHHHH-HHHHHH---hC-CCCCceEEEecC
Q 027323 106 QRKAEMARQADAFIA-LPGGYGTLEELLE-VITWAQ---LG-IHDKPVGLLNVD 153 (225)
Q Consensus 106 ~Rk~~mv~~sDa~Iv-lpGG~GTL~El~~-~~~~~q---lg-~~~kPiill~~~ 153 (225)
++-.--+..||++|+ -|-=.|++.-.+. .+.+.. .+ ..+||++++...
T Consensus 62 ~~~~~~l~~aD~iI~~sP~y~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~~ 115 (152)
T PF03358_consen 62 QELYDKLKEADGIIFASPVYNGSVSGQLKNFLDRLSCWFRRALRGKPVAIIAVG 115 (152)
T ss_dssp HHHHHHHHHSSEEEEEEEEBTTBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEEE
T ss_pred HHHHhceecCCeEEEeecEEcCcCChhhhHHHHHhccccccccCCCEEEEEEEe
Confidence 344444578998776 4655555554442 233332 22 357999888443
No 186
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=31.92 E-value=2.6e+02 Score=22.16 Aligned_cols=40 Identities=15% Similarity=0.066 Sum_probs=33.7
Q ss_pred HHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCcEEEE
Q 027323 40 IQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (225)
Q Consensus 40 ~~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi 80 (225)
.-++..|-.+||.+++-|-. =-.+...+.|.+.+..+||+
T Consensus 17 niv~~~L~~~GfeVidLG~~-v~~e~~v~aa~~~~adiVgl 56 (128)
T cd02072 17 KILDHAFTEAGFNVVNLGVL-SPQEEFIDAAIETDADAILV 56 (128)
T ss_pred HHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEE
Confidence 34566777899999999854 66799999999999999999
No 187
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=31.89 E-value=93 Score=23.79 Aligned_cols=31 Identities=13% Similarity=0.135 Sum_probs=18.3
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027323 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (225)
Q Consensus 19 ~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lV 54 (225)
|+|+|+|.|..... .++.+-+.|.++|+.+.
T Consensus 1 ksiAVvGaS~~~~~-----~g~~v~~~l~~~G~~v~ 31 (116)
T PF13380_consen 1 KSIAVVGASDNPGK-----FGYRVLRNLKAAGYEVY 31 (116)
T ss_dssp -EEEEET--SSTTS-----HHHHHHHHHHHTT-EEE
T ss_pred CEEEEEcccCCCCC-----hHHHHHHHHHhCCCEEE
Confidence 57999977764322 24567777777887765
No 188
>PRK13937 phosphoheptose isomerase; Provisional
Probab=31.84 E-value=1.1e+02 Score=25.37 Aligned_cols=30 Identities=20% Similarity=0.147 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHCCCeEEEcCCCcch
Q 027323 33 PSYQLAAIQLGKQLVERNIDLVYGGGSIGL 62 (225)
Q Consensus 33 ~~~~~~A~~lG~~LA~~g~~lVtGGG~~Gl 62 (225)
+...+.|+++.+.|.+.+...++|.|..+.
T Consensus 22 ~~l~~aa~~i~~~l~~a~rI~i~G~G~S~~ 51 (188)
T PRK13937 22 EAIAKVAEALIEALANGGKILLCGNGGSAA 51 (188)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcHhHH
Confidence 566788899999999999999999987554
No 189
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=31.65 E-value=2.1e+02 Score=24.41 Aligned_cols=108 Identities=13% Similarity=0.111 Sum_probs=57.7
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE--EcCCCcchHHHHHHHHHhcCCcEEEEecCccccC--CCCCC
Q 027323 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV--YGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPR--EITGD 93 (225)
Q Consensus 18 ~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lV--tGGG~~GlM~a~a~gA~~~GG~viGi~P~~~~~~--e~~~~ 93 (225)
.+.|.|+=+ .++ +.|.++.+.|.+.|+.++ |=-.+ +..+++.+-..+.....||.-- .+.+. +....
T Consensus 4 ~~vv~Vir~----~~~---~~a~~ia~al~~gGi~~iEit~~tp-~a~~~I~~l~~~~~~~~vGAGT-Vl~~e~a~~ai~ 74 (201)
T PRK06015 4 QPVIPVLLI----DDV---EHAVPLARALAAGGLPAIEITLRTP-AALDAIRAVAAEVEEAIVGAGT-ILNAKQFEDAAK 74 (201)
T ss_pred CCEEEEEEc----CCH---HHHHHHHHHHHHCCCCEEEEeCCCc-cHHHHHHHHHHHCCCCEEeeEe-CcCHHHHHHHHH
Confidence 346777721 122 456788888888888775 22234 6777776655556666777621 11110 00001
Q ss_pred CCceEEecCCHHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHH
Q 027323 94 TVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVIT 136 (225)
Q Consensus 94 ~~~~~i~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~El~~~~~ 136 (225)
-=.++++.+.+...-... .....+..+|| .-|..|+..++.
T Consensus 75 aGA~FivSP~~~~~vi~~-a~~~~i~~iPG-~~TptEi~~A~~ 115 (201)
T PRK06015 75 AGSRFIVSPGTTQELLAA-ANDSDVPLLPG-AATPSEVMALRE 115 (201)
T ss_pred cCCCEEECCCCCHHHHHH-HHHcCCCEeCC-CCCHHHHHHHHH
Confidence 112455666554322222 23334667775 458888888773
No 190
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=31.37 E-value=3.3e+02 Score=23.64 Aligned_cols=125 Identities=24% Similarity=0.308 Sum_probs=57.2
Q ss_pred EEEcCCCcchHHHH---HHHHHhcC-CcEEEEecCccccCCCCCCCCceEEecC-CHHH--HHHHHHHhcCeEEEecCCC
Q 027323 53 LVYGGGSIGLMGLV---SQAVYDGG-RHVLGVIPKTLMPREITGDTVGEVKAVS-GMHQ--RKAEMARQADAFIALPGGY 125 (225)
Q Consensus 53 lVtGGG~~GlM~a~---a~gA~~~G-G~viGi~P~~~~~~e~~~~~~~~~i~~~-~m~~--Rk~~mv~~sDa~IvlpGG~ 125 (225)
+|-||.. +-.+|+ +++|++.| |.|.-+.|....+.- ....-++++.+ ...+ .-....+..|++++=|| .
T Consensus 2 lvigGS~-~~~GA~~Laa~aAlr~GaGlV~~~~~~~~~~~~--~~~~Pe~m~~~~~~~~~~~~~~~~~~~~av~iGPG-l 77 (242)
T PF01256_consen 2 LVIGGSE-GYPGAAILAARAALRSGAGLVTLATPESIAPVI--ASYSPEAMVSPLPSDEDVEILELLEKADAVVIGPG-L 77 (242)
T ss_dssp EEEE-BT-SSHHHHHHHHHHHHHTT-SEEEEEECGCCHHHH--HHHTTTSEEEETTHCCHHHHHHHHCH-SEEEE-TT--
T ss_pred EEEECCC-CCCCHHHHHHHHHHHHCCCcEEEEEcHHHHHHH--HhCCceeEEecccchhhhhhHhhhccCCEEEeecC-C
Confidence 5667744 666665 67777776 566666655332100 00011222211 1111 22334567898887776 4
Q ss_pred CcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEEcCCHHHHHHHHHh
Q 027323 126 GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEE 195 (225)
Q Consensus 126 GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~l~~ 195 (225)
|+-++..+++.. +-...+|+ +++-++.| . +.... ......++++-.+.|+-+.+..
T Consensus 78 g~~~~~~~~~~~--~~~~~~p~-VlDADaL~-----~---l~~~~---~~~~~~~IlTPH~gE~~rL~~~ 133 (242)
T PF01256_consen 78 GRDEETEELLEE--LLESDKPL-VLDADALN-----L---LAENP---KKRNAPVILTPHPGEFARLLGK 133 (242)
T ss_dssp SSSHHHHHHHHH--HHHHCSTE-EEECHHHH-----C---HHHCC---CCSSSCEEEE-BHHHHHHHHTT
T ss_pred CCchhhHHHHHH--HHhhcceE-EEehHHHH-----H---HHhcc---ccCCCCEEECCCHHHHHHHhCC
Confidence 554553333211 11135784 44654321 1 11111 3344567778888887776654
No 191
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.98 E-value=85 Score=30.25 Aligned_cols=46 Identities=15% Similarity=0.258 Sum_probs=28.2
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC----CCcchHHHHHHHH
Q 027323 20 RVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG----GSIGLMGLVSQAV 70 (225)
Q Consensus 20 ~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGG----G~~GlM~a~a~gA 70 (225)
.|+|.||.+..-... .-.||.|+..||..+-== -.+=+|....+.+
T Consensus 268 ~V~Ilcgpgnnggdg-----~v~gRHL~~~G~~~vi~~pk~s~~~~~~~~L~~q~ 317 (453)
T KOG2585|consen 268 LVAILCGPGNNGGDG-----LVCGRHLAQHGYTPVIYYPKRSLNVDLYKSLVKQC 317 (453)
T ss_pred eEEEEeCCCCccchh-----HHHHHHHHHcCceeEEEeecCccchhHHHHHHHHh
Confidence 399999987532222 228999999997655211 0125666655544
No 192
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=30.88 E-value=65 Score=28.35 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=25.3
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 027323 20 RVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (225)
Q Consensus 20 ~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGG 57 (225)
+|+|+||......+.=...++.+-+.|.+.||.++.-.
T Consensus 1 ~~~~~~gg~s~e~~~s~~s~~~i~~al~~~g~~v~~i~ 38 (315)
T TIGR01205 1 RVAVLFGGKSAEHEISLVSAAAVLKALRDLGYDVYPVD 38 (315)
T ss_pred CEEEEeCCCCCCeeeeHHHHHHHHHHHhhcCCEEEEEe
Confidence 36776555544333213578899999999999976444
No 193
>PRK05568 flavodoxin; Provisional
Probab=30.76 E-value=88 Score=24.07 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=16.2
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe
Q 027323 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNID 52 (225)
Q Consensus 19 ~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~ 52 (225)
++|.|+..|..++.+ ..|+.+.+.+.+.|+.
T Consensus 2 ~~~~IvY~S~~GnT~---~~a~~i~~~~~~~g~~ 32 (142)
T PRK05568 2 KKINIIYWSGTGNTE---AMANLIAEGAKENGAE 32 (142)
T ss_pred CeEEEEEECCCchHH---HHHHHHHHHHHHCCCe
Confidence 455565566666432 3455565555444443
No 194
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=30.68 E-value=1.2e+02 Score=26.32 Aligned_cols=71 Identities=6% Similarity=0.001 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHh-CCCCCceEEEecCc-cchhHHHHHHHHHHcCCCCcccccceEE
Q 027323 105 HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQL-GIHDKPVGLLNVDG-YYNSLLSFIDKAVDEGFIAPAARYIIVS 182 (225)
Q Consensus 105 ~~Rk~~mv~~sDa~IvlpGG~GTL~El~~~~~~~ql-g~~~kPiill~~~g-~w~~l~~~l~~~~~~g~i~~~~~~~i~~ 182 (225)
.+|....+..+|.+|+++ |=-++.-+..+... ..++.|++++|.+. .++. ...+++
T Consensus 169 ~~~~~~~~~~aDl~lviG----TSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~~d~------------------~~~~~i 226 (244)
T PRK14138 169 LREAIRLSSKASLMIVMG----SSLVVYPAAELPLITVRSGGKLVIVNLGETPLDD------------------IATLKY 226 (244)
T ss_pred HHHHHHHHhcCCEEEEeC----cCCeeecHhHHHHHHHHcCCeEEEEcCCCCCCCc------------------ceeEEE
Confidence 466666678899888853 32222223322221 13578999999742 1111 123688
Q ss_pred cCCHHHHHHHHHhhc
Q 027323 183 AQTAHELICKLEEYV 197 (225)
Q Consensus 183 ~~d~ee~~~~l~~~~ 197 (225)
..+.+|+++.|.+++
T Consensus 227 ~~~~~~~l~~l~~~~ 241 (244)
T PRK14138 227 NMDVVEFANRVMSEG 241 (244)
T ss_pred eCCHHHHHHHHHHHh
Confidence 899999999988753
No 195
>PRK06635 aspartate kinase; Reviewed
Probab=30.64 E-value=1.5e+02 Score=27.45 Aligned_cols=35 Identities=23% Similarity=0.214 Sum_probs=18.3
Q ss_pred EEcCCCCCCChHHHHHHHHHHHHHHHCCC--eEEEcCC
Q 027323 23 VFCGSSPGKSPSYQLAAIQLGKQLVERNI--DLVYGGG 58 (225)
Q Consensus 23 VfggS~~~~~~~~~~~A~~lG~~LA~~g~--~lVtGGG 58 (225)
=|||+...+.+...+.+..+.++ .+.|+ .+|.+||
T Consensus 7 K~GGs~l~~~~~~~~~~~~i~~~-~~~g~~~vvV~sg~ 43 (404)
T PRK06635 7 KFGGTSVGDVERIKRVAERVKAE-VEAGHQVVVVVSAM 43 (404)
T ss_pred eECCcccCCHHHHHHHHHHHHHH-HHcCCCEEEEEeCC
Confidence 38888776444454444444433 34454 3555554
No 196
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=30.30 E-value=1.5e+02 Score=23.66 Aligned_cols=40 Identities=13% Similarity=0.038 Sum_probs=34.5
Q ss_pred HHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCcEEEE
Q 027323 40 IQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (225)
Q Consensus 40 ~~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi 80 (225)
.-+...|-.+||.+++-|-. =-.+.+.+.|.+.+-..||+
T Consensus 19 ~iv~~~l~~~GfeVi~LG~~-v~~e~~v~aa~~~~adiVgl 58 (134)
T TIGR01501 19 KILDHAFTNAGFNVVNLGVL-SPQEEFIKAAIETKADAILV 58 (134)
T ss_pred HHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEE
Confidence 45677777899999999854 77799999999999999999
No 197
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=30.14 E-value=4e+02 Score=23.74 Aligned_cols=113 Identities=23% Similarity=0.299 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHCCC--eEEEcCCCcchHHH---HHHHHHhcC--CcEEEEecCccc--------cCCCCCCCC----ce
Q 027323 37 LAAIQLGKQLVERNI--DLVYGGGSIGLMGL---VSQAVYDGG--RHVLGVIPKTLM--------PREITGDTV----GE 97 (225)
Q Consensus 37 ~~A~~lG~~LA~~g~--~lVtGGG~~GlM~a---~a~gA~~~G--G~viGi~P~~~~--------~~e~~~~~~----~~ 97 (225)
+.|+ .+-.+|+.|+ .||++|=+ |+-+- +.+-+.+.| ..=+-|+|..-- .....|+.+ +|
T Consensus 60 ~Ra~-~AielA~~G~~ValVSsGDp-gVYgMA~lv~E~~~~~~~~~v~veVvPGvTA~~aaAa~lGAPL~hDF~~ISLSD 137 (249)
T COG1010 60 ERAK-EAIELAAEGRDVALVSSGDP-GVYGMAGLVLEAAEEEGWYDVDVEVVPGVTAALAAAARLGAPLGHDFCVISLSD 137 (249)
T ss_pred HHHH-HHHHHHhcCCeEEEEeCCCc-cHHHhHHHHHHHHHhcCCCCccEEEeCChHHHHHHHHHhCCCcccceEEEEhHh
Confidence 4543 4555666555 67888865 87543 334343344 234666776431 112222211 12
Q ss_pred EEecCCHHHHHHHHHHhcCeEEEe--cCCCC---cHHHHHHHHHHHHhCCCCCceEEEecC
Q 027323 98 VKAVSGMHQRKAEMARQADAFIAL--PGGYG---TLEELLEVITWAQLGIHDKPVGLLNVD 153 (225)
Q Consensus 98 ~i~~~~m~~Rk~~mv~~sDa~Ivl--pGG~G---TL~El~~~~~~~qlg~~~kPiill~~~ 153 (225)
+..+-..-++.......+|.+|+| |=+-+ -+.+.++++ .+......||++....
T Consensus 138 lLtPwe~IekRl~aAA~adfVi~~YNP~s~~R~~~~~~a~eil--~~~r~~~tpVgivrna 196 (249)
T COG1010 138 LLTPWEVIEKRLRAAAEADFVIALYNPISKRRPEQLGRAFEIL--REHRSPDTPVGIVRNA 196 (249)
T ss_pred cCCcHHHHHHHHHHHhhCCEEEEEECCccccchHHHHHHHHHH--HHhcCCCCcEEEEecC
Confidence 222212235555557889988887 66666 455555554 2333457899998643
No 198
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=30.02 E-value=3.3e+02 Score=24.85 Aligned_cols=78 Identities=19% Similarity=0.121 Sum_probs=41.0
Q ss_pred HHHHHHHhcC-eEEEecCCCCcHHHHHHHHHHHHhCC-CCCceEEEe---cCccchhHHHHHHHHH---HcCCCCccccc
Q 027323 107 RKAEMARQAD-AFIALPGGYGTLEELLEVITWAQLGI-HDKPVGLLN---VDGYYNSLLSFIDKAV---DEGFIAPAARY 178 (225)
Q Consensus 107 Rk~~mv~~sD-a~IvlpGG~GTL~El~~~~~~~qlg~-~~kPiill~---~~g~w~~l~~~l~~~~---~~g~i~~~~~~ 178 (225)
+-.-+++.+. ++|+|-||.|| .++. .+||++=+. ..-+++-+.+.+..+. .+.+-......
T Consensus 6 ~G~~~i~~~~va~viLaGG~GT-----------RLg~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip 74 (323)
T cd04193 6 AGLKAIAEGKVAVLLLAGGQGT-----------RLGFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIP 74 (323)
T ss_pred HhHHHHhcCCEEEEEECCCccc-----------ccCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCce
Confidence 3344455556 68889999999 3343 467776554 1236666666655432 11111111223
Q ss_pred ceEEcC--CHHHHHHHHHh
Q 027323 179 IIVSAQ--TAHELICKLEE 195 (225)
Q Consensus 179 ~i~~~~--d~ee~~~~l~~ 195 (225)
.+++++ +-++..+++++
T Consensus 75 ~~imtS~~t~~~t~~~~~~ 93 (323)
T cd04193 75 WYIMTSEATHEETRKFFKE 93 (323)
T ss_pred EEEEcChhHhHHHHHHHHh
Confidence 343333 35566777765
No 199
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=29.94 E-value=1.5e+02 Score=25.16 Aligned_cols=69 Identities=19% Similarity=0.271 Sum_probs=38.0
Q ss_pred HHHHHHhcCeEEEec--CCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEEcCC
Q 027323 108 KAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT 185 (225)
Q Consensus 108 k~~mv~~sDa~Ivlp--GG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d 185 (225)
...+...||++|.-. .|+|. =++|+++ .++|++..+..+. .+.+ .+.....++-.+|
T Consensus 260 ~~~~~~~~d~~l~~s~~e~~~~--~~lEa~a------~g~PvI~~~~~~~----~~~i---------~~~~~g~~~~~~~ 318 (364)
T cd03814 260 LAAAYASADVFVFPSRTETFGL--VVLEAMA------SGLPVVAPDAGGP----ADIV---------TDGENGLLVEPGD 318 (364)
T ss_pred HHHHHHhCCEEEECcccccCCc--HHHHHHH------cCCCEEEcCCCCc----hhhh---------cCCcceEEcCCCC
Confidence 345667899876532 23332 2556664 4899998775542 1211 1112233444567
Q ss_pred HHHHHHHHHhhc
Q 027323 186 AHELICKLEEYV 197 (225)
Q Consensus 186 ~ee~~~~l~~~~ 197 (225)
.+++.+.|.+..
T Consensus 319 ~~~l~~~i~~l~ 330 (364)
T cd03814 319 AEAFAAALAALL 330 (364)
T ss_pred HHHHHHHHHHHH
Confidence 777777777654
No 200
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=29.86 E-value=84 Score=22.79 Aligned_cols=54 Identities=19% Similarity=0.204 Sum_probs=30.5
Q ss_pred CCCCCceEEEecCccchhHHHHHHH-HHHcCCCCcccccceEEcCCHHHHHHHHHhh
Q 027323 141 GIHDKPVGLLNVDGYYNSLLSFIDK-AVDEGFIAPAARYIIVSAQTAHELICKLEEY 196 (225)
Q Consensus 141 g~~~kPiill~~~g~w~~l~~~l~~-~~~~g~i~~~~~~~i~~~~d~ee~~~~l~~~ 196 (225)
..+-+|++.++.+|.++.+.+-++. +.....+.-.... ..-+|.+++.+.|++.
T Consensus 13 a~~l~p~v~IGk~Glt~~vi~~i~~~l~~~eLvKVk~~~--~~~~~~~~~~~~l~~~ 67 (84)
T PF01985_consen 13 AHHLKPVVQIGKNGLTDGVIEEIDDALEKHELVKVKVLG--NCREDRKEIAEQLAEK 67 (84)
T ss_dssp HTTC--SEEE-TTSS-HHHHHHHHHHHHHHSEEEEEETT----HHHHHHHHHHHHHH
T ss_pred hcCCCCeEEECCCCCCHHHHHHHHHHHHhCCeeEEEEcc--CCHHHHHHHHHHHHHH
Confidence 3456999999999999999999865 4444444322222 1334456666666664
No 201
>cd00432 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA depends on the binding of L18 and L5 to 5S rRNA. L18/L5e is generally described as L18 in prokaryotes and archaea, and as L5e (or L5) in eukaryotes. In bacteria, the CP proteins L5, L18, and L25 are required for the ribosome to incorporate 5S rRNA into the large subunit, one of the last steps in ribosome assembly. In archaea, both L18 and L5 bind 5S rRNA; in eukaryotes, only the L18 homolog (L5e) binds 5S rRNA but a homolog to L5 is also identified.
Probab=29.85 E-value=1.1e+02 Score=22.91 Aligned_cols=38 Identities=29% Similarity=0.450 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHH----CCCeEE---EcCCC-cchHHHHHHHHHhcC
Q 027323 37 LAAIQLGKQLVE----RNIDLV---YGGGS-IGLMGLVSQAVYDGG 74 (225)
Q Consensus 37 ~~A~~lG~~LA~----~g~~lV---tGGG~-~GlM~a~a~gA~~~G 74 (225)
+.|+.+|+.||+ .|+.-| -|+-. .|-+.|+++++.++|
T Consensus 57 ~aA~~vG~~la~r~~~~gi~~vv~D~~~~~~~grv~a~~~~~r~~G 102 (103)
T cd00432 57 EAAYLVGRLLAKRALEKGIKKVVFDRGGYRYHGRVKALAKGAREGG 102 (103)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCCCcccccHHHHHHHHHHHcC
Confidence 678888888887 333332 23322 489999999999877
No 202
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=29.81 E-value=2e+02 Score=25.30 Aligned_cols=69 Identities=26% Similarity=0.343 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHH-----HHHHHHcCCCCcccccceEEcCCHHHHHHHHHhhcCCCC
Q 027323 127 TLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSF-----IDKAVDEGFIAPAARYIIVSAQTAHELICKLEEYVPKHS 201 (225)
Q Consensus 127 TL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~-----l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~l~~~~~~~~ 201 (225)
||+.+++.+....-.-...||+|+ |||+|++.+ ++...+.|.-. ++++|=|-|=...+.+....+.
T Consensus 78 tl~~i~emvk~ar~~gvt~PIiLm---gYYNPIl~yG~e~~iq~ak~aGanG------fiivDlPpEEa~~~Rne~~k~g 148 (268)
T KOG4175|consen 78 TLNSIIEMVKEARPQGVTCPIILM---GYYNPILRYGVENYIQVAKNAGANG------FIIVDLPPEEAETLRNEARKHG 148 (268)
T ss_pred cHHHHHHHHHHhcccCcccceeee---ecccHHHhhhHHHHHHHHHhcCCCc------eEeccCChHHHHHHHHHHHhcC
Q ss_pred CCc
Q 027323 202 GVA 204 (225)
Q Consensus 202 ~~~ 204 (225)
.+.
T Consensus 149 isl 151 (268)
T KOG4175|consen 149 ISL 151 (268)
T ss_pred ceE
No 203
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=29.76 E-value=61 Score=29.02 Aligned_cols=42 Identities=19% Similarity=0.334 Sum_probs=29.3
Q ss_pred HHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCc
Q 027323 110 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 154 (225)
Q Consensus 110 ~mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g 154 (225)
-++..||+|++|+-..=+++-+-.+.. ....++||.++|++.
T Consensus 242 ~~v~e~dg~LvlGsSL~v~Sg~r~i~~---a~~~k~pi~IvNIGp 283 (305)
T KOG2683|consen 242 EKVKECDGFLVLGSSLMVLSGFRFIRH---AHEKKKPIAIVNIGP 283 (305)
T ss_pred HHHhccCceEEechhHHHHHHHHHHHH---HHhhcCcEEEEecCC
Confidence 356789999999777666665544332 123579999999863
No 204
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.74 E-value=3e+02 Score=24.43 Aligned_cols=55 Identities=22% Similarity=0.320 Sum_probs=35.5
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCC---------eEEEcCCCcchHHHHHHHHHh--cCCcEEEE
Q 027323 20 RVCVFCGSSPGKSPSYQLAAIQLGKQLVERNI---------DLVYGGGSIGLMGLVSQAVYD--GGRHVLGV 80 (225)
Q Consensus 20 ~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~---------~lVtGGG~~GlM~a~a~gA~~--~GG~viGi 80 (225)
+|+|+. + . .+...+.+.++-++|.++|+ .++.|| . |-|-.+++-+.. .+-.++||
T Consensus 2 ~i~Ii~--~-~-~~~~~~~~~~l~~~l~~~g~~~~~~~~Dlvi~iGG-D-GT~L~a~~~~~~~~~~iPilGI 67 (265)
T PRK04885 2 KVAIIS--N-G-DPKSKRVASKLKKYLKDFGFILDEKNPDIVISVGG-D-GTLLSAFHRYENQLDKVRFVGV 67 (265)
T ss_pred EEEEEe--C-C-CHHHHHHHHHHHHHHHHcCCccCCcCCCEEEEECC-c-HHHHHHHHHhcccCCCCeEEEE
Confidence 588882 3 2 45566788889988877654 345555 5 777666665544 45566776
No 205
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=29.73 E-value=1.4e+02 Score=26.98 Aligned_cols=83 Identities=14% Similarity=0.044 Sum_probs=38.8
Q ss_pred CCeEEEcCCCcchHHHHHHHHHhcCCcEEEEecCccccCCCC-CCCCceEEecCCHHHHHHHHHHhcCeEEEecCCCCcH
Q 027323 50 NIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREIT-GDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTL 128 (225)
Q Consensus 50 g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~-~~~~~~~i~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL 128 (225)
...+|.|+|..|++ +..-|+..|.+++.+........+.. .-..+.++...+- ++-..+....|.+|=..|+..|+
T Consensus 185 ~~VlV~G~G~vG~~--avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~-~~~~~~~~~~D~vid~~g~~~~~ 261 (360)
T PLN02586 185 KHLGVAGLGGLGHV--AVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDP-EKMKAAIGTMDYIIDTVSAVHAL 261 (360)
T ss_pred CEEEEECCCHHHHH--HHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCH-HHHHhhcCCCCEEEECCCCHHHH
Confidence 35666676655554 45567778888877643321111110 1112222222221 11111112347777666765666
Q ss_pred HHHHHHH
Q 027323 129 EELLEVI 135 (225)
Q Consensus 129 ~El~~~~ 135 (225)
++.+..+
T Consensus 262 ~~~~~~l 268 (360)
T PLN02586 262 GPLLGLL 268 (360)
T ss_pred HHHHHHh
Confidence 6655443
No 206
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=29.70 E-value=2.8e+02 Score=24.88 Aligned_cols=70 Identities=9% Similarity=0.029 Sum_probs=45.2
Q ss_pred cCcceEEEEcCCCCCC---ChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHH--HHHHHhcCCcEEEEecCccc
Q 027323 16 SRFKRVCVFCGSSPGK---SPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLV--SQAVYDGGRHVLGVIPKTLM 86 (225)
Q Consensus 16 ~~~~~I~VfggS~~~~---~~~~~~~A~~lG~~LA~~g~~lVtGGG~~GlM~a~--a~gA~~~GG~viGi~P~~~~ 86 (225)
....-|.|.|++.... .++..+..+...+. +.....|+.|-|..+.-+++ ++-|.+.|..-+-++|.++.
T Consensus 41 ~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~-~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~ 115 (309)
T cd00952 41 AGVDGILTMGTFGECATLTWEEKQAFVATVVET-VAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWL 115 (309)
T ss_pred cCCCEEEECcccccchhCCHHHHHHHHHHHHHH-hCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCC
Confidence 4455677777666543 45554444443333 44568888888866887776 46677889888888776543
No 207
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=29.59 E-value=1.4e+02 Score=25.79 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=41.9
Q ss_pred HHHHHHhcCeEEEec---CCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEEcC
Q 027323 108 KAEMARQADAFIALP---GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQ 184 (225)
Q Consensus 108 k~~mv~~sDa~Ivlp---GG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 184 (225)
...++..||++|.-. .|+|+ =++|+++ .++|+|+.+..+. ..+.. ++ ....++-.+
T Consensus 257 ~~~~l~~ad~~i~ps~~~e~~~~--~l~EA~a------~G~PvI~~~~~~~-~e~i~-------~~-----~~g~~~~~~ 315 (355)
T cd03819 257 MPAAYALADIVVSASTEPEAFGR--TAVEAQA------MGRPVIASDHGGA-RETVR-------PG-----ETGLLVPPG 315 (355)
T ss_pred HHHHHHhCCEEEecCCCCCCCch--HHHHHHh------cCCCEEEcCCCCc-HHHHh-------CC-----CceEEeCCC
Confidence 445567899877643 35553 3566664 4799999876542 32221 11 123345567
Q ss_pred CHHHHHHHHHhhc
Q 027323 185 TAHELICKLEEYV 197 (225)
Q Consensus 185 d~ee~~~~l~~~~ 197 (225)
|++++.+.|....
T Consensus 316 ~~~~l~~~i~~~~ 328 (355)
T cd03819 316 DAEALAQALDQIL 328 (355)
T ss_pred CHHHHHHHHHHHH
Confidence 8999888886543
No 208
>PRK08264 short chain dehydrogenase; Validated
Probab=29.43 E-value=3e+02 Score=22.52 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=18.1
Q ss_pred CCeEEEcCCCcchHHHHHHHHHhcCC-cEEEE
Q 027323 50 NIDLVYGGGSIGLMGLVSQAVYDGGR-HVLGV 80 (225)
Q Consensus 50 g~~lVtGGG~~GlM~a~a~gA~~~GG-~viGi 80 (225)
...||+||.. |+=.++++...+.|- +|+.+
T Consensus 7 ~~vlItGgsg-~iG~~la~~l~~~G~~~V~~~ 37 (238)
T PRK08264 7 KVVLVTGANR-GIGRAFVEQLLARGAAKVYAA 37 (238)
T ss_pred CEEEEECCCc-hHHHHHHHHHHHCCcccEEEE
Confidence 3456666653 666666666666665 55554
No 209
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=29.31 E-value=62 Score=30.77 Aligned_cols=40 Identities=30% Similarity=0.390 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCC----------cchHHHHHHHHHhcCCc
Q 027323 37 LAAIQLGKQLVERNIDLVYGGGS----------IGLMGLVSQAVYDGGRH 76 (225)
Q Consensus 37 ~~A~~lG~~LA~~g~~lVtGGG~----------~GlM~a~a~gA~~~GG~ 76 (225)
+.|+.|++.|.++|+.||+||-. .|+-+..++.+++.-+.
T Consensus 291 ~NAkaLAe~l~~~G~~vvsGgTdnHl~lVDl~~~~~~Gk~ae~~L~~~~I 340 (413)
T COG0112 291 KNAKALAEALKERGFKVVSGGTDNHLVLVDLRSKGLTGKKAEAALERAGI 340 (413)
T ss_pred HHHHHHHHHHHHcCCeEecCCccceEEEEEcccCCCCHHHHHHHHHHcCE
Confidence 45677888888899999998732 26667777777775543
No 210
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=29.17 E-value=1.4e+02 Score=26.33 Aligned_cols=70 Identities=21% Similarity=0.294 Sum_probs=39.9
Q ss_pred HHHHHHhcCeEEEe--cCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEEcCC
Q 027323 108 KAEMARQADAFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT 185 (225)
Q Consensus 108 k~~mv~~sDa~Ivl--pGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d 185 (225)
...+...||++|.- ..|+|.. ++|+++ .++|++..+..| ..++ +.+ .....++-.+|
T Consensus 296 ~~~~~~~adi~l~ps~~e~~~~~--l~Ea~a------~G~Pvi~s~~~~----~~e~----i~~-----~~~g~~~~~~~ 354 (398)
T cd03800 296 LPALYRAADVFVNPALYEPFGLT--ALEAMA------CGLPVVATAVGG----PRDI----VVD-----GVTGLLVDPRD 354 (398)
T ss_pred HHHHHHhCCEEEecccccccCcH--HHHHHh------cCCCEEECCCCC----HHHH----ccC-----CCCeEEeCCCC
Confidence 34456789987742 3455542 566664 479998876543 2222 111 11223333457
Q ss_pred HHHHHHHHHhhcC
Q 027323 186 AHELICKLEEYVP 198 (225)
Q Consensus 186 ~ee~~~~l~~~~~ 198 (225)
++++.+.|.+...
T Consensus 355 ~~~l~~~i~~l~~ 367 (398)
T cd03800 355 PEALAAALRRLLT 367 (398)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888877653
No 211
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=29.14 E-value=2.7e+02 Score=25.01 Aligned_cols=63 Identities=19% Similarity=0.216 Sum_probs=35.0
Q ss_pred cHHHHHHHHHHHHhCCCCCceEEEecCc--cchhHHHHHHHHHHcCCCCcccccceEEcCCHHHHHHHHHh
Q 027323 127 TLEELLEVITWAQLGIHDKPVGLLNVDG--YYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEE 195 (225)
Q Consensus 127 TL~El~~~~~~~qlg~~~kPiill~~~g--~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~l~~ 195 (225)
|++..++.+.-..-.-...|++|+..-+ |+.++..|++.+.+.|.- -+.+.|=|-|--+.+..
T Consensus 77 t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~Gvd------GlivpDLP~ee~~~~~~ 141 (265)
T COG0159 77 TLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVD------GLLVPDLPPEESDELLK 141 (265)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCC------EEEeCCCChHHHHHHHH
Confidence 5566666653222112457999985211 334466777777766642 36666666655554444
No 212
>PRK13059 putative lipid kinase; Reviewed
Probab=28.92 E-value=1.2e+02 Score=26.77 Aligned_cols=39 Identities=18% Similarity=0.331 Sum_probs=26.4
Q ss_pred HHHHHCCC-eEEEcCCCcchHHHHHHHHHhcC-CcEEEEecC
Q 027323 44 KQLVERNI-DLVYGGGSIGLMGLVSQAVYDGG-RHVLGVIPK 83 (225)
Q Consensus 44 ~~LA~~g~-~lVtGGG~~GlM~a~a~gA~~~G-G~viGi~P~ 83 (225)
+..++.++ .||..||. |--..++.+..+.+ ...+||+|.
T Consensus 50 ~~~~~~~~d~vi~~GGD-GTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 50 FKDIDESYKYILIAGGD-GTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred HHHhhcCCCEEEEECCc-cHHHHHHHHHHhcCCCCcEEEECC
Confidence 34445554 44455555 99999999888765 456999994
No 213
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=28.90 E-value=78 Score=26.00 Aligned_cols=88 Identities=17% Similarity=0.216 Sum_probs=41.5
Q ss_pred HhcCeEEEecCC-----CCcHHHHHHHHHHHHh-CCCCCceEEEecCc--cchhHH-HHHHHHHHcCCCCcccccceEEc
Q 027323 113 RQADAFIALPGG-----YGTLEELLEVITWAQL-GIHDKPVGLLNVDG--YYNSLL-SFIDKAVDEGFIAPAARYIIVSA 183 (225)
Q Consensus 113 ~~sDa~IvlpGG-----~GTL~El~~~~~~~ql-g~~~kPiill~~~g--~w~~l~-~~l~~~~~~g~i~~~~~~~i~~~ 183 (225)
..+|.+|+.+|| ..........+.+..+ ...++|+++++.+= +..... ..++.+.+. ...+.+
T Consensus 62 ~~~~~vii~GGg~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~g~g~gp~~~~~~~~~~~~~l~~--------~~~i~v 133 (286)
T PF04230_consen 62 KNADDVIIGGGGGSDNNFIDLWSLPIFLRWLFLAKKLGKPVIILGQGIGPFRSEEFKKLLRRILSK--------ADYISV 133 (286)
T ss_pred ccCCeEEEECCcccccCCCcchhhHHHHHHHHHHHhcCCCeEEECceECccCCHHHHHHHHHHHhC--------CCEEEE
Confidence 467777777775 2222222111222222 24689999997631 233332 233444432 123556
Q ss_pred CCHHHHHHHHHhhcCC-CCCCcccccc
Q 027323 184 QTAHELICKLEEYVPK-HSGVASNLSW 209 (225)
Q Consensus 184 ~d~ee~~~~l~~~~~~-~~~~~~~~~w 209 (225)
.|.... +.+.+.-.. .....++..|
T Consensus 134 RD~~S~-~~l~~~g~~~~~~~~~D~af 159 (286)
T PF04230_consen 134 RDEYSY-ELLKKLGISGNVKLVPDPAF 159 (286)
T ss_pred CCHHHH-HHHHHcCCCCCcEEEeCchh
Confidence 666533 355544332 3444455445
No 214
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=28.85 E-value=66 Score=30.65 Aligned_cols=36 Identities=31% Similarity=0.400 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHCCCeEEEcCC----------CcchHHHHHHHHHhc
Q 027323 38 AAIQLGKQLVERNIDLVYGGG----------SIGLMGLVSQAVYDG 73 (225)
Q Consensus 38 ~A~~lG~~LA~~g~~lVtGGG----------~~GlM~a~a~gA~~~ 73 (225)
.|+.|+..|-++||.||+||- +.|+.++.++-.++.
T Consensus 329 Nakala~~l~~~Gy~lvtgGTDnHlvLvDLr~~G~dGarvE~vle~ 374 (477)
T KOG2467|consen 329 NAKALASALISRGYKLVTGGTDNHLVLVDLRPKGVDGARVEKVLEL 374 (477)
T ss_pred HHHHHHHHHHHcCceEecCCccceEEEEeccccCCchHHHHHHHHH
Confidence 456677778889999999984 358888888877764
No 215
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=28.84 E-value=1.2e+02 Score=26.28 Aligned_cols=49 Identities=16% Similarity=0.383 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCeEEEe-cCCCCcHHHHH-HHHHHHHhC------CCCCceEEEecCc
Q 027323 106 QRKAEMARQADAFIAL-PGGYGTLEELL-EVITWAQLG------IHDKPVGLLNVDG 154 (225)
Q Consensus 106 ~Rk~~mv~~sDa~Ivl-pGG~GTL~El~-~~~~~~qlg------~~~kPiill~~~g 154 (225)
.+-...++.+|+||++ |.=-|++.-.+ .++.|..-. ...||+.++...|
T Consensus 82 ~~l~~~v~~ADgvii~TPEYn~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaSg 138 (219)
T TIGR02690 82 RELRQLSEWSEGQVWCSPERHGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVSG 138 (219)
T ss_pred HHHHHHHHhCCEEEEeCCccccCcCHHHHHHHHhcccCcccccccCCCcEEEEEeCC
Confidence 4445567889998886 43223332222 344454321 3579999987543
No 216
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=28.81 E-value=2.7e+02 Score=24.34 Aligned_cols=41 Identities=32% Similarity=0.368 Sum_probs=22.4
Q ss_pred HHHhcCeEEEecCCCCcHHHHH--HHHHHHH-hCCCCCceEEEecCcc
Q 027323 111 MARQADAFIALPGGYGTLEELL--EVITWAQ-LGIHDKPVGLLNVDGY 155 (225)
Q Consensus 111 mv~~sDa~IvlpGG~GTL~El~--~~~~~~q-lg~~~kPiill~~~g~ 155 (225)
++..+|++++ +.||+.+-. .+....+ ...+++|+| ++..+.
T Consensus 51 ~~~~~~alvi---~~G~l~~~~~~~i~~~~~~a~~~~~pvV-lDpv~~ 94 (263)
T PRK09355 51 MAKIAGALVI---NIGTLTEERIEAMLAAGKIANEAGKPVV-LDPVGV 94 (263)
T ss_pred HHHhcCceEE---eCCCCCHHHHHHHHHHHHHHHhcCCCEE-ECCccc
Confidence 3578899888 555554432 2222212 234578965 576653
No 217
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=28.72 E-value=2.4e+02 Score=25.80 Aligned_cols=21 Identities=38% Similarity=0.417 Sum_probs=17.9
Q ss_pred CeEEEecCCCCcHHHHHHHHH
Q 027323 116 DAFIALPGGYGTLEELLEVIT 136 (225)
Q Consensus 116 Da~IvlpGG~GTL~El~~~~~ 136 (225)
-..|.+|--.|.|.++...+.
T Consensus 307 ~l~v~l~D~pG~L~~v~~~i~ 327 (380)
T TIGR01127 307 RIETVLPDRPGALYHLLESIA 327 (380)
T ss_pred EEEEEeCCCCCHHHHHHHHHh
Confidence 456779999999999998885
No 218
>PRK00208 thiG thiazole synthase; Reviewed
Probab=28.72 E-value=4.2e+02 Score=23.60 Aligned_cols=108 Identities=15% Similarity=0.226 Sum_probs=65.5
Q ss_pred HHhhcCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE-EcCCCcchHHHHHHHHHhcCCcEEEEecCccccCCC
Q 027323 12 AALKSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV-YGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREI 90 (225)
Q Consensus 12 ~~~~~~~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lV-tGGG~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~ 90 (225)
+......-++=|.+......++. ....+-++.|++.|+.++ |-.-. + ..++...+.|-..+ .|-. .+...
T Consensus 87 e~~~~~~iKlEVi~d~~~llpd~--~~tv~aa~~L~~~Gf~vlpyc~~d--~--~~ak~l~~~G~~~v--mPlg-~pIGs 157 (250)
T PRK00208 87 EALGTNWIKLEVIGDDKTLLPDP--IETLKAAEILVKEGFVVLPYCTDD--P--VLAKRLEEAGCAAV--MPLG-APIGS 157 (250)
T ss_pred HHhCCCeEEEEEecCCCCCCcCH--HHHHHHHHHHHHCCCEEEEEeCCC--H--HHHHHHHHcCCCEe--CCCC-cCCCC
Confidence 33445556777886555433222 234677888899999999 76633 3 33444445566655 3310 11110
Q ss_pred CCCCCceEEecCCHHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHH
Q 027323 91 TGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVIT 136 (225)
Q Consensus 91 ~~~~~~~~i~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~El~~~~~ 136 (225)
...+ .+ .+..+.+.+..+.-|+..||++|.++...++.
T Consensus 158 -g~gi------~~-~~~i~~i~e~~~vpVIveaGI~tpeda~~Ame 195 (250)
T PRK00208 158 -GLGL------LN-PYNLRIIIEQADVPVIVDAGIGTPSDAAQAME 195 (250)
T ss_pred -CCCC------CC-HHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHH
Confidence 1111 11 44466666767889999999999999999885
No 219
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=28.69 E-value=1.4e+02 Score=25.07 Aligned_cols=66 Identities=18% Similarity=0.276 Sum_probs=37.6
Q ss_pred HHHHhcCeEEEecC--CCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEEcCCHH
Q 027323 110 EMARQADAFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAH 187 (225)
Q Consensus 110 ~mv~~sDa~IvlpG--G~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~e 187 (225)
-+...||++|.-.. |+|+ =+.|+++ .++|+|..+..+. .+++++ ...++-.+|++
T Consensus 264 ~~~~~adi~v~ps~~e~~~~--~~~Ea~a------~g~PvI~~~~~~~----~e~~~~-----------~g~~~~~~~~~ 320 (365)
T cd03807 264 ALLNALDVFVLSSLSEGFPN--VLLEAMA------CGLPVVATDVGDN----AELVGD-----------TGFLVPPGDPE 320 (365)
T ss_pred HHHHhCCEEEeCCccccCCc--HHHHHHh------cCCCEEEcCCCCh----HHHhhc-----------CCEEeCCCCHH
Confidence 45688997765321 2222 2555554 4799998765432 222221 12344456888
Q ss_pred HHHHHHHhhcC
Q 027323 188 ELICKLEEYVP 198 (225)
Q Consensus 188 e~~~~l~~~~~ 198 (225)
++.+.+.+...
T Consensus 321 ~l~~~i~~l~~ 331 (365)
T cd03807 321 ALAEAIEALLA 331 (365)
T ss_pred HHHHHHHHHHh
Confidence 88888877653
No 220
>PLN02271 serine hydroxymethyltransferase
Probab=28.68 E-value=58 Score=32.48 Aligned_cols=40 Identities=30% Similarity=0.366 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCC----------cchHHHHHHHHHhcCCc
Q 027323 37 LAAIQLGKQLVERNIDLVYGGGS----------IGLMGLVSQAVYDGGRH 76 (225)
Q Consensus 37 ~~A~~lG~~LA~~g~~lVtGGG~----------~GlM~a~a~gA~~~GG~ 76 (225)
+.|+.|++.|.++||.||+||-. .|+.+..++-+++.-|.
T Consensus 442 ~NAkaLA~~L~~~G~~vv~ggTdnHlvLvDl~~~g~~G~~ae~~Le~~~I 491 (586)
T PLN02271 442 KNAQALASALLRRKCRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHI 491 (586)
T ss_pred HHHHHHHHHHHHCCCeEeeCCCCcceeeecCcccCCCHHHHHHHHHHcCe
Confidence 34667788888899999998721 35566666666665443
No 221
>PRK06756 flavodoxin; Provisional
Probab=28.68 E-value=1.4e+02 Score=23.28 Aligned_cols=14 Identities=14% Similarity=0.218 Sum_probs=6.4
Q ss_pred HHHHHHhcCCcEEE
Q 027323 66 VSQAVYDGGRHVLG 79 (225)
Q Consensus 66 ~a~gA~~~GG~viG 79 (225)
..+-..+.|..+++
T Consensus 106 l~~~l~~~g~~~v~ 119 (148)
T PRK06756 106 LIEKLQERGAAVVL 119 (148)
T ss_pred HHHHHHHCCCEEcC
Confidence 33334445555544
No 222
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.56 E-value=1.2e+02 Score=27.46 Aligned_cols=53 Identities=21% Similarity=0.298 Sum_probs=33.5
Q ss_pred HhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecC--ccc-----hhHHHHHHHHHHcCC
Q 027323 113 RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD--GYY-----NSLLSFIDKAVDEGF 171 (225)
Q Consensus 113 ~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~--g~w-----~~l~~~l~~~~~~g~ 171 (225)
+.+|. |+.-||=||+-..+..+ ....+||+-+|.+ ||. +.+.+.++.+.+..|
T Consensus 67 ~~~Dl-vi~iGGDGTlL~aar~~-----~~~~iPilGIN~G~lGFLt~~~~~~~~~~l~~l~~g~y 126 (305)
T PRK02649 67 SSMKF-AIVLGGDGTVLSAARQL-----APCGIPLLTINTGHLGFLTEAYLNQLDEAIDQVLAGQY 126 (305)
T ss_pred cCcCE-EEEEeCcHHHHHHHHHh-----cCCCCcEEEEeCCCCcccccCCHHHHHHHHHHHHcCCc
Confidence 34674 45558889977665443 2357899888764 455 556666666665444
No 223
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=28.47 E-value=4.3e+02 Score=23.55 Aligned_cols=107 Identities=15% Similarity=0.251 Sum_probs=63.4
Q ss_pred HhhcCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE-EcCCCcchHHHHHHHHHhcCCcEEEEecCccccCCCC
Q 027323 13 ALKSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV-YGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREIT 91 (225)
Q Consensus 13 ~~~~~~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lV-tGGG~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~ 91 (225)
......-++=|.+....--++. ...-+-.+.|++.|+.++ |-.-. + ..++...+.|-..+ .|-. .+...
T Consensus 88 ~~~~~~iKlEVi~d~~~Llpd~--~~tv~aa~~L~~~Gf~vlpyc~dd--~--~~ar~l~~~G~~~v--mPlg-~pIGs- 157 (248)
T cd04728 88 ALGTDWIKLEVIGDDKTLLPDP--IETLKAAEILVKEGFTVLPYCTDD--P--VLAKRLEDAGCAAV--MPLG-SPIGS- 157 (248)
T ss_pred HhCCCeEEEEEecCccccccCH--HHHHHHHHHHHHCCCEEEEEeCCC--H--HHHHHHHHcCCCEe--CCCC-cCCCC-
Confidence 3344555677776555432222 234567888899999999 76633 3 33444555666655 3311 11110
Q ss_pred CCCCceEEecCCHHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHH
Q 027323 92 GDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVIT 136 (225)
Q Consensus 92 ~~~~~~~i~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~El~~~~~ 136 (225)
...+ .+ .+.-+.+.+..+.-|+..||+||.++...++.
T Consensus 158 g~Gi------~~-~~~I~~I~e~~~vpVI~egGI~tpeda~~Ame 195 (248)
T cd04728 158 GQGL------LN-PYNLRIIIERADVPVIVDAGIGTPSDAAQAME 195 (248)
T ss_pred CCCC------CC-HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHH
Confidence 1111 11 33334666667899999999999999999884
No 224
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=28.41 E-value=1.7e+02 Score=28.00 Aligned_cols=105 Identities=18% Similarity=0.213 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHC---------CCeEEEcCC---CcchHHHHHHHHHhcCCcEEEEecCccccCCCCCCCCceEEecCCHH
Q 027323 38 AAIQLGKQLVER---------NIDLVYGGG---SIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMH 105 (225)
Q Consensus 38 ~A~~lG~~LA~~---------g~~lVtGGG---~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~i~~~~m~ 105 (225)
.|...++.+|++ +..++||+- +.=|+.|++..+.+.|.+++-+....+.. .+.+.+....+
T Consensus 121 ~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~------~~~~~l~~~~~- 193 (445)
T PRK12422 121 LPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTE------HLVSAIRSGEM- 193 (445)
T ss_pred HHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHH------HHHHHHhcchH-
Confidence 455666666641 234677653 23378888888888787776664322110 00000001112
Q ss_pred HHHHHHHHhcCeEEE-----ecCCCCcHHHHHHHHHHHHhCCCCCceEEEe
Q 027323 106 QRKAEMARQADAFIA-----LPGGYGTLEELLEVITWAQLGIHDKPVGLLN 151 (225)
Q Consensus 106 ~Rk~~mv~~sDa~Iv-----lpGG~GTL~El~~~~~~~qlg~~~kPiill~ 151 (225)
++-+...+..|++++ +.|.-.|.+|++.++.... ..++++++..
T Consensus 194 ~~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~--~~~k~IIlts 242 (445)
T PRK12422 194 QRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLH--TEGKLIVISS 242 (445)
T ss_pred HHHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHH--HCCCcEEEec
Confidence 122222356676655 3455568888887764222 2357777753
No 225
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=28.35 E-value=1.4e+02 Score=22.60 Aligned_cols=8 Identities=13% Similarity=0.638 Sum_probs=3.8
Q ss_pred hcCCcEEE
Q 027323 72 DGGRHVLG 79 (225)
Q Consensus 72 ~~GG~viG 79 (225)
+.|..+++
T Consensus 108 ~~g~~~v~ 115 (140)
T TIGR01753 108 EAGATIIA 115 (140)
T ss_pred HCCCEEec
Confidence 34555443
No 226
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=28.28 E-value=1.2e+02 Score=28.62 Aligned_cols=71 Identities=13% Similarity=0.118 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCC-cEEEEecCccccCCCCCCCCceEEe-------cCCHHHHHHHHHHhcCeEEEecCCCCcHHHHHH
Q 027323 63 MGLVSQAVYDGGR-HVLGVIPKTLMPREITGDTVGEVKA-------VSGMHQRKAEMARQADAFIALPGGYGTLEELLE 133 (225)
Q Consensus 63 M~a~a~gA~~~GG-~viGi~P~~~~~~e~~~~~~~~~i~-------~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~El~~ 133 (225)
-..+.+.-.+.|- -+.||++..+...+.+..--.+.+. .+...++..-+++.||++|..+--+|+-+++..
T Consensus 279 ~~~~~~~L~~~g~~v~~g~l~~~d~d~~~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~~vi~~~~~~g~~~~~~~ 357 (402)
T PRK09536 279 AARAVSRLVAAGASVSVGPVPEGDTAAETAARVGCEAVTVPPFKPIEDSTRAEATDLIIAADAVVAAGVAAAARSGVIG 357 (402)
T ss_pred HHHHHHHHHHCCCeEEEecCcCcchhHHHHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCCEEEECCCccCCCCCchh
Confidence 3445554444443 3567776544322211111112222 234478889999999999997766666555443
No 227
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=28.25 E-value=1.9e+02 Score=25.46 Aligned_cols=69 Identities=19% Similarity=0.243 Sum_probs=40.2
Q ss_pred HHHhcCeEEEec--CCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEEcCCHHH
Q 027323 111 MARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHE 188 (225)
Q Consensus 111 mv~~sDa~Ivlp--GG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee 188 (225)
+...||++|... .|+|. =+.|+++ +++|+|..+.+..-. ++ +.+.....++-.+|+++
T Consensus 275 ~~~~ad~~v~~S~~Eg~~~--~~lEAma------~G~PvI~~~~~~g~~---~~---------v~~~~~G~lv~~~d~~~ 334 (372)
T cd04949 275 VYQKAQLSLLTSQSEGFGL--SLMEALS------HGLPVISYDVNYGPS---EI---------IEDGENGYLVPKGDIEA 334 (372)
T ss_pred HHhhhhEEEecccccccCh--HHHHHHh------CCCCEEEecCCCCcH---HH---------cccCCCceEeCCCcHHH
Confidence 456799887754 24443 3556664 589999987641111 11 21222233333458999
Q ss_pred HHHHHHhhcCC
Q 027323 189 LICKLEEYVPK 199 (225)
Q Consensus 189 ~~~~l~~~~~~ 199 (225)
+.+.|.++...
T Consensus 335 la~~i~~ll~~ 345 (372)
T cd04949 335 LAEAIIELLND 345 (372)
T ss_pred HHHHHHHHHcC
Confidence 88888877543
No 228
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=28.23 E-value=90 Score=22.22 Aligned_cols=16 Identities=19% Similarity=0.248 Sum_probs=14.0
Q ss_pred HHHHHHHHHCCCeEEE
Q 027323 40 IQLGKQLVERNIDLVY 55 (225)
Q Consensus 40 ~~lG~~LA~~g~~lVt 55 (225)
.++++.|+++||.++.
T Consensus 33 ~~~a~~L~~~G~~V~~ 48 (79)
T PF12146_consen 33 AHLAEFLAEQGYAVFA 48 (79)
T ss_pred HHHHHHHHhCCCEEEE
Confidence 5799999999999983
No 229
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=28.11 E-value=1.3e+02 Score=21.38 Aligned_cols=33 Identities=39% Similarity=0.674 Sum_probs=23.0
Q ss_pred CeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCc
Q 027323 116 DAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 154 (225)
Q Consensus 116 Da~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g 154 (225)
=-+|.|| +|++||..+.+ .++|.. |--+++.+|
T Consensus 19 GKvi~lP---~SleeLl~ia~-~kfg~~--~~~v~~~dg 51 (69)
T PF11834_consen 19 GKVIWLP---DSLEELLKIAS-EKFGFS--ATKVLNEDG 51 (69)
T ss_pred CEEEEcC---ccHHHHHHHHH-HHhCCC--ceEEEcCCC
Confidence 3477889 69999998875 466653 555666554
No 230
>PRK15494 era GTPase Era; Provisional
Probab=27.77 E-value=4.7e+02 Score=23.76 Aligned_cols=89 Identities=13% Similarity=0.119 Sum_probs=42.5
Q ss_pred HHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCC-CceEEEecCccchhHHHHHHHHHHcCCCCcccccceEE----cCCH
Q 027323 112 ARQADAFIALPGGYGTLEELLEVITWAQLGIHD-KPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVS----AQTA 186 (225)
Q Consensus 112 v~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~-kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~----~~d~ 186 (225)
+..+|++|++--..-++++....+ +..+...+ .|++++|..+..+.....+.....+.+. ....+.+ -+..
T Consensus 129 l~~aDvil~VvD~~~s~~~~~~~i-l~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~~~~~---~~~i~~iSAktg~gv 204 (339)
T PRK15494 129 LHSADLVLLIIDSLKSFDDITHNI-LDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLTENHP---DSLLFPISALSGKNI 204 (339)
T ss_pred hhhCCEEEEEEECCCCCCHHHHHH-HHHHHhcCCCEEEEEEhhcCccccHHHHHHHHHhcCC---CcEEEEEeccCccCH
Confidence 467898777643333333432211 12222223 4555667644333212222222222111 0122222 3468
Q ss_pred HHHHHHHHhhcCCCCCCc
Q 027323 187 HELICKLEEYVPKHSGVA 204 (225)
Q Consensus 187 ee~~~~l~~~~~~~~~~~ 204 (225)
++++++|.+..+.+..-+
T Consensus 205 ~eL~~~L~~~l~~~~~~~ 222 (339)
T PRK15494 205 DGLLEYITSKAKISPWLY 222 (339)
T ss_pred HHHHHHHHHhCCCCCCCC
Confidence 899999999888765433
No 231
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=27.69 E-value=2.7e+02 Score=25.71 Aligned_cols=69 Identities=22% Similarity=0.259 Sum_probs=40.9
Q ss_pred HHHHHhcCeEEEec--------CCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccce
Q 027323 109 AEMARQADAFIALP--------GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYII 180 (225)
Q Consensus 109 ~~mv~~sDa~Ivlp--------GG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i 180 (225)
.-+...||+||.-. -|+| .=+.|+++ .++|||..+.+|. .++ + .+.....+
T Consensus 293 ~~~l~~aDv~v~pS~~~~~g~~Eg~p--~~llEAma------~G~PVI~t~~~g~----~E~----v-----~~~~~G~l 351 (406)
T PRK15427 293 KAMLDDADVFLLPSVTGADGDMEGIP--VALMEAMA------VGIPVVSTLHSGI----PEL----V-----EADKSGWL 351 (406)
T ss_pred HHHHHhCCEEEECCccCCCCCccCcc--HHHHHHHh------CCCCEEEeCCCCc----hhh----h-----cCCCceEE
Confidence 44678899887632 2333 34667764 4899999876542 222 1 12222334
Q ss_pred EEcCCHHHHHHHHHhhcC
Q 027323 181 VSAQTAHELICKLEEYVP 198 (225)
Q Consensus 181 ~~~~d~ee~~~~l~~~~~ 198 (225)
+-.+|++++.+.|.+...
T Consensus 352 v~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 352 VPENDAQALAQRLAAFSQ 369 (406)
T ss_pred eCCCCHHHHHHHHHHHHh
Confidence 445688888888877654
No 232
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=27.67 E-value=1.4e+02 Score=25.70 Aligned_cols=39 Identities=15% Similarity=0.008 Sum_probs=30.3
Q ss_pred cCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027323 16 SRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (225)
Q Consensus 16 ~~~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lV 54 (225)
.|...|+|||||=.+.+.-+...|+..-+.+...++.+|
T Consensus 19 ~~~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v 57 (236)
T PLN02945 19 PRTRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVL 57 (236)
T ss_pred CCceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEE
Confidence 456689999999988888888888777777776666544
No 233
>KOG0503 consensus Asparaginase [Amino acid transport and metabolism]
Probab=27.58 E-value=92 Score=29.20 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=27.6
Q ss_pred HhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEec
Q 027323 113 RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 152 (225)
Q Consensus 113 ~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~ 152 (225)
+..|+|||+.| .-||+|.+..++++- .- .|||++.+.
T Consensus 120 ~~~~G~VV~HG-TDTLe~tAffls~~~-~t-~KPIVitGa 156 (368)
T KOG0503|consen 120 KSYDGIVVTHG-TDTLEETAFFLSFTI-NT-LKPIVITGA 156 (368)
T ss_pred cccCcEEEEcC-cchHHHHHHHHHHHH-hc-CCcEEEecc
Confidence 35789998875 789999998887642 22 399998753
No 234
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=27.38 E-value=86 Score=25.17 Aligned_cols=75 Identities=17% Similarity=0.176 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCeEEEecCC--CCcHHHHHHHHHHHHhCCCCCceEEEecCccchh-HHHHHHHHHHcCCCCcccccceE
Q 027323 105 HQRKAEMARQADAFIALPGG--YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNS-LLSFIDKAVDEGFIAPAARYIIV 181 (225)
Q Consensus 105 ~~Rk~~mv~~sDa~IvlpGG--~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~-l~~~l~~~~~~g~i~~~~~~~i~ 181 (225)
......++..||++++-+=- -||++++.... ...++++++++..-+-+ . +.+.|+= .. -=.
T Consensus 53 ~~~~~~~l~~aD~viiTGsTlvN~Ti~~iL~~~------~~~~~vil~GpS~~~~P~~------l~~~Gv~---~v-~g~ 116 (147)
T PF04016_consen 53 DEDAEEILPWADVVIITGSTLVNGTIDDILELA------RNAREVILYGPSAPLHPEA------LFDYGVT---YV-GGS 116 (147)
T ss_dssp GGGHHHHGGG-SEEEEECHHCCTTTHHHHHHHT------TTSSEEEEESCCGGS-GGG------GCCTT-S---EE-EEE
T ss_pred HHHHHHHHccCCEEEEEeeeeecCCHHHHHHhC------ccCCeEEEEecCchhhHHH------HHhCCCC---EE-EEE
Confidence 45567778999976654432 49999997654 24689999987642222 1 1111110 00 124
Q ss_pred EcCCHHHHHHHHHh
Q 027323 182 SAQTAHELICKLEE 195 (225)
Q Consensus 182 ~~~d~ee~~~~l~~ 195 (225)
.+.|++.+++.+++
T Consensus 117 ~v~d~~~~~~~i~~ 130 (147)
T PF04016_consen 117 RVVDPEKVLRAISE 130 (147)
T ss_dssp EES-HHHHHHHHCT
T ss_pred EEeCHHHHHHHHHc
Confidence 48899999999876
No 235
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=27.10 E-value=5.8e+02 Score=24.66 Aligned_cols=113 Identities=19% Similarity=0.174 Sum_probs=56.8
Q ss_pred HHHHHHHHC--CCeEEEcCCCc-------chHHHHHHHHHhcCCcEEEEecCccccCCCCCCCCceEEecCCHHHHHHHH
Q 027323 41 QLGKQLVER--NIDLVYGGGSI-------GLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEM 111 (225)
Q Consensus 41 ~lG~~LA~~--g~~lVtGGG~~-------GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~i~~~~m~~Rk~~m 111 (225)
++-+.|.+. |..+++=|... -...++.++....+-++|=-......+...+ ..+.+.+-+.. ..+|
T Consensus 286 ~l~~fl~~~~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~~~~~p----~Nv~i~~w~Pq-~~lL 360 (507)
T PHA03392 286 YLEEFLNNSTNGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVEAINLP----ANVLTQKWFPQ-RAVL 360 (507)
T ss_pred HHHHHHhcCCCcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcCcccCC----CceEEecCCCH-HHHh
Confidence 455556544 45555555321 2345666666556655442221111110111 23445555554 3343
Q ss_pred H-HhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCC
Q 027323 112 A-RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGF 171 (225)
Q Consensus 112 v-~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~ 171 (225)
. ..+++|| --||.||..|.. .+++|++.+-. |+|.. ...+.+.+.|.
T Consensus 361 ~hp~v~~fI-tHGG~~s~~Eal---------~~GvP~v~iP~--~~DQ~-~Na~rv~~~G~ 408 (507)
T PHA03392 361 KHKNVKAFV-TQGGVQSTDEAI---------DALVPMVGLPM--MGDQF-YNTNKYVELGI 408 (507)
T ss_pred cCCCCCEEE-ecCCcccHHHHH---------HcCCCEEECCC--CccHH-HHHHHHHHcCc
Confidence 2 3456554 567788877764 26899998743 44543 33455556553
No 236
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=26.84 E-value=1.4e+02 Score=25.82 Aligned_cols=52 Identities=12% Similarity=0.133 Sum_probs=35.3
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCcEEEE
Q 027323 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (225)
Q Consensus 18 ~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi 80 (225)
||+|+++| ... .-..|++.+++.||.++.|+. .--++....+...+..++|.
T Consensus 1 m~~~~i~G-tGn--------iG~alA~~~a~ag~eV~igs~--r~~~~~~a~a~~l~~~i~~~ 52 (211)
T COG2085 1 MMIIAIIG-TGN--------IGSALALRLAKAGHEVIIGSS--RGPKALAAAAAALGPLITGG 52 (211)
T ss_pred CcEEEEec-cCh--------HHHHHHHHHHhCCCeEEEecC--CChhHHHHHHHhhccccccC
Confidence 56777774 432 234689999999999999974 45566666666666554444
No 237
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=26.74 E-value=2.9e+02 Score=21.08 Aligned_cols=50 Identities=16% Similarity=0.288 Sum_probs=27.1
Q ss_pred HHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHH
Q 027323 112 ARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVD 168 (225)
Q Consensus 112 v~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~ 168 (225)
.+.+|++|=+. -.-.+.+..+.+. .+++|+++ +..||-+.-++.++.+.+
T Consensus 65 ~~~~DVvIDfT-~p~~~~~~~~~~~-----~~g~~~Vi-GTTG~~~~~~~~l~~~a~ 114 (124)
T PF01113_consen 65 LEEADVVIDFT-NPDAVYDNLEYAL-----KHGVPLVI-GTTGFSDEQIDELEELAK 114 (124)
T ss_dssp TTH-SEEEEES--HHHHHHHHHHHH-----HHT-EEEE-E-SSSHHHHHHHHHHHTT
T ss_pred cccCCEEEEcC-ChHHhHHHHHHHH-----hCCCCEEE-ECCCCCHHHHHHHHHHhc
Confidence 34499999887 3333333333221 25788876 566786666676666544
No 238
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.58 E-value=1.3e+02 Score=26.75 Aligned_cols=35 Identities=11% Similarity=0.026 Sum_probs=24.9
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 027323 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYG 56 (225)
Q Consensus 19 ~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtG 56 (225)
++|+|+. +.. .+.-.+.+.++.++|.++|+.+..-
T Consensus 1 m~v~iv~--~~~-k~~~~~~~~~I~~~L~~~g~~v~v~ 35 (277)
T PRK03708 1 MRFGIVA--RRD-KEEALKLAYRVYDFLKVSGYEVVVD 35 (277)
T ss_pred CEEEEEe--cCC-CHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 3588883 333 2445577889999999999887763
No 239
>PRK00861 putative lipid kinase; Reviewed
Probab=26.55 E-value=1.5e+02 Score=26.19 Aligned_cols=30 Identities=33% Similarity=0.608 Sum_probs=21.8
Q ss_pred cCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEE
Q 027323 115 ADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 150 (225)
Q Consensus 115 sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill 150 (225)
.| .|+.-||=||++|+...+. ..+.|+.++
T Consensus 58 ~d-~vv~~GGDGTl~evv~~l~-----~~~~~lgvi 87 (300)
T PRK00861 58 AE-LIIASGGDGTLSAVAGALI-----GTDIPLGII 87 (300)
T ss_pred CC-EEEEECChHHHHHHHHHHh-----cCCCcEEEE
Confidence 35 5667899999999987663 134677776
No 240
>KOG1584 consensus Sulfotransferase [General function prediction only]
Probab=26.38 E-value=1.4e+02 Score=27.23 Aligned_cols=58 Identities=22% Similarity=0.379 Sum_probs=35.2
Q ss_pred CCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceE----EcCCHHHHHHHHHhhc
Q 027323 123 GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIV----SAQTAHELICKLEEYV 197 (225)
Q Consensus 123 GG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~----~~~d~ee~~~~l~~~~ 197 (225)
.+.||++|+++..+ .=++++ +.||++++.|.+ +.+ ...-++. +-.||...+..|.+|+
T Consensus 152 ~~~~~~e~~fe~F~--------~G~~~~--Gp~~dHVl~~W~-~~~------~~~VLFl~YEdmk~dp~~~ikrlaeFL 213 (297)
T KOG1584|consen 152 PGPGTFEEFFESFC--------NGVVPY--GPWWDHVLGYWE-LED------PKNVLFLKYEDMKADPKGEIKKLAEFL 213 (297)
T ss_pred CCCCcHHHHHHHHh--------CCcCCc--CChHHHHHHHHH-hcC------CCceEEEEHHHhhhCHHHHHHHHHHHh
Confidence 56788999999874 113333 349999998866 211 1111121 2356777777887776
No 241
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=26.36 E-value=1.1e+02 Score=24.41 Aligned_cols=43 Identities=12% Similarity=0.007 Sum_probs=24.9
Q ss_pred hHHHHHHHHH--hhcCcceEEEEcCCCCCCChHHHHHHHHHHHHH
Q 027323 4 QQQQQQAAAA--LKSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQL 46 (225)
Q Consensus 4 ~~~~~~~~~~--~~~~~~~I~VfggS~~~~~~~~~~~A~~lG~~L 46 (225)
..|.++..+. +.++...++|+++....-++.|...|..+.+.+
T Consensus 57 ~vP~~v~~Fl~~~~n~~~~~gV~gsGnr~~g~~f~~a~~~i~~~~ 101 (134)
T PRK03600 57 AVPKQVIRFLNDEHNRKLLRGVIASGNRNFGDAFALAGDVISAKC 101 (134)
T ss_pred cccHHHHHHHhccccCCcEEEEEEecCchHHHHHHHHHHHHHHHh
Confidence 3566666666 556666788885443322455665555555543
No 242
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=26.25 E-value=87 Score=24.39 Aligned_cols=41 Identities=17% Similarity=0.236 Sum_probs=23.0
Q ss_pred hcCeEEEecC--CCCcHH-HHHHHHHHHHhCCCCCceEEEecCc-cc
Q 027323 114 QADAFIALPG--GYGTLE-ELLEVITWAQLGIHDKPVGLLNVDG-YY 156 (225)
Q Consensus 114 ~sDa~IvlpG--G~GTL~-El~~~~~~~qlg~~~kPiill~~~g-~w 156 (225)
.+|.+|+... |.|.+. ++...+. ++...+|.+.+++..+ .|
T Consensus 50 ~~d~iilgs~t~~~g~~p~~~~~fl~--~l~~~~k~~avfgtgd~~~ 94 (140)
T TIGR01754 50 NYDLVFLGTWTWERGRTPDEMKDFIA--ELGYKPSNVAIFGTGETQW 94 (140)
T ss_pred hCCEEEEEcCeeCCCcCCHHHHHHHH--HhcccCCEEEEEEcCCCCc
Confidence 3676665543 566664 4554443 3333568888887642 45
No 243
>PRK07677 short chain dehydrogenase; Provisional
Probab=26.14 E-value=98 Score=25.93 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=17.3
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 027323 20 RVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (225)
Q Consensus 20 ~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGG 57 (225)
++-|.|+++. ....+++.|+++|+.|+.-+
T Consensus 3 ~~lItG~s~g--------iG~~ia~~l~~~G~~Vi~~~ 32 (252)
T PRK07677 3 VVIITGGSSG--------MGKAMAKRFAEEGANVVITG 32 (252)
T ss_pred EEEEeCCCCh--------HHHHHHHHHHHCCCEEEEEe
Confidence 4556655442 23456666677777765443
No 244
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=26.04 E-value=2.1e+02 Score=23.96 Aligned_cols=73 Identities=19% Similarity=0.312 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCeEEEec--CCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEEc
Q 027323 106 QRKAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 183 (225)
Q Consensus 106 ~Rk~~mv~~sDa~Ivlp--GG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~ 183 (225)
+...-+...||++|... .|+|+ =+.|++. .++|++.-+..+. .++ +.. .....++-.
T Consensus 270 ~~~~~~~~~ad~~i~~~~~~~~~~--~~~Ea~~------~G~pvI~~~~~~~----~~~----~~~-----~~~g~~~~~ 328 (377)
T cd03798 270 EEVPAYYAAADVFVLPSLREGFGL--VLLEAMA------CGLPVVATDVGGI----PEI----ITD-----GENGLLVPP 328 (377)
T ss_pred HHHHHHHHhcCeeecchhhccCCh--HHHHHHh------cCCCEEEecCCCh----HHH----hcC-----CcceeEECC
Confidence 33455667899877543 34443 2555553 4799988765432 222 111 111234556
Q ss_pred CCHHHHHHHHHhhcCC
Q 027323 184 QTAHELICKLEEYVPK 199 (225)
Q Consensus 184 ~d~ee~~~~l~~~~~~ 199 (225)
+|++++.+.|.+....
T Consensus 329 ~~~~~l~~~i~~~~~~ 344 (377)
T cd03798 329 GDPEALAEAILRLLAD 344 (377)
T ss_pred CCHHHHHHHHHHHhcC
Confidence 7999999988887644
No 245
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=26.03 E-value=4.4e+02 Score=23.55 Aligned_cols=71 Identities=20% Similarity=0.378 Sum_probs=38.6
Q ss_pred HHHHHCCCeEEE---cCCC-cchHHHHHHHHHhcCCcEEEEecCccccCCCCCCCCceEEecCCHHHHHHHHHHhcCeEE
Q 027323 44 KQLVERNIDLVY---GGGS-IGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFI 119 (225)
Q Consensus 44 ~~LA~~g~~lVt---GGG~-~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~i~~~~m~~Rk~~mv~~sDa~I 119 (225)
+.|-.....+|+ |||. .|.--.+++-+.+.|-.+++|.|..+. .|.. .....=......|.+.+|.+|
T Consensus 80 ~~l~~~d~v~i~aglGGGTGSG~ap~ia~~a~e~g~~~~~vvt~Pf~-~Eg~-------~~~~nA~~~l~~L~~~~d~~i 151 (304)
T cd02201 80 EALEGADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTVAVVTKPFS-FEGK-------KRMRQAEEGLEELRKHVDTLI 151 (304)
T ss_pred HHHhCCCEEEEeeccCCCcchhHHHHHHHHHHHcCCCEEEEEeCCcc-ccch-------hHHHHHHHHHHHHHHhCCEEE
Confidence 344334555555 5554 245555677788888888888653221 0100 000111234455567888888
Q ss_pred Eec
Q 027323 120 ALP 122 (225)
Q Consensus 120 vlp 122 (225)
+++
T Consensus 152 vid 154 (304)
T cd02201 152 VIP 154 (304)
T ss_pred EEe
Confidence 887
No 246
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=25.99 E-value=2.1e+02 Score=25.45 Aligned_cols=45 Identities=27% Similarity=0.322 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHHC-CCeEEEcCCCcchHHHHHHHHHhcCCcEE
Q 027323 33 PSYQLAAIQLGKQLVER-NIDLVYGGGSIGLMGLVSQAVYDGGRHVL 78 (225)
Q Consensus 33 ~~~~~~A~~lG~~LA~~-g~~lVtGGG~~GlM~a~a~gA~~~GG~vi 78 (225)
-.|.+.|-.+..-+|.+ |..|..|- +.|-++-+.+.|.++||..+
T Consensus 91 ~~~Lr~A~~fVa~vA~r~GiILFv~t-n~~~~~~ve~aA~r~~gy~~ 136 (251)
T KOG0832|consen 91 ASYLRRALNFVAHVAHRGGIILFVGT-NNGFKDLVERAARRAGGYSH 136 (251)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEec-CcchHHHHHHHHHHhcCcee
Confidence 57889999999999986 55555555 56999999999999998755
No 247
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=25.94 E-value=1.7e+02 Score=24.65 Aligned_cols=17 Identities=41% Similarity=0.614 Sum_probs=8.3
Q ss_pred HHHHHHHHhcCCcEEEE
Q 027323 64 GLVSQAVYDGGRHVLGV 80 (225)
Q Consensus 64 ~a~a~gA~~~GG~viGi 80 (225)
+++.+.+.+.|..++||
T Consensus 67 ~~~~~~~~~~~~PvlGi 83 (209)
T PRK13146 67 EAVIEAVLAAGRPFLGI 83 (209)
T ss_pred HHHHHHHHhCCCcEEEE
Confidence 33444444455555555
No 248
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=25.82 E-value=3e+02 Score=20.93 Aligned_cols=91 Identities=15% Similarity=0.106 Sum_probs=48.2
Q ss_pred HHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHh---cCC-cEEEEecCccccCCCCCCCCceEEecCCHHHHHHHHHHh
Q 027323 39 AIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYD---GGR-HVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQ 114 (225)
Q Consensus 39 A~~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~---~GG-~viGi~P~~~~~~e~~~~~~~~~i~~~~m~~Rk~~mv~~ 114 (225)
.+++.+.+.+.....++|-| +....+.++++. .++ .+.++... .+..-...++..
T Consensus 3 ~~~~a~~~~~~~~i~~~G~G--~s~~~a~e~~~kl~e~~~i~~~~~~~~-------------------e~~hg~~~~~~~ 61 (153)
T cd05009 3 IKELAEKLKEAKSFYVLGRG--PNYGTALEGALKLKETSYIHAEAYSAG-------------------EFKHGPIALVDE 61 (153)
T ss_pred HHHHHHHHhccCcEEEEcCC--CCHHHHHHHHHHHHHHHhhcceeccHH-------------------HhccChhhhccC
Confidence 35677778888888888876 345555555553 332 33333111 111112223455
Q ss_pred cCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEec
Q 027323 115 ADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 152 (225)
Q Consensus 115 sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~ 152 (225)
.|.+|++-++-.|-+++..++... ...+.|++++..
T Consensus 62 ~~~vi~is~~g~t~~~~~~~~~~~--~~~~~~vi~it~ 97 (153)
T cd05009 62 GTPVIFLAPEDRLEEKLESLIKEV--KARGAKVIVITD 97 (153)
T ss_pred CCcEEEEecCChhHHHHHHHHHHH--HHcCCEEEEEec
Confidence 666666664446666666555332 234567777643
No 249
>PLN02740 Alcohol dehydrogenase-like
Probab=25.73 E-value=1.4e+02 Score=27.06 Aligned_cols=84 Identities=20% Similarity=0.243 Sum_probs=41.4
Q ss_pred CCCeEEEcCCCcchHHHHHHHHHhcCC-cEEEEecCccccCCCC-CCCCceEEecC----CHHHHHHHHHH-hcCeEEEe
Q 027323 49 RNIDLVYGGGSIGLMGLVSQAVYDGGR-HVLGVIPKTLMPREIT-GDTVGEVKAVS----GMHQRKAEMAR-QADAFIAL 121 (225)
Q Consensus 49 ~g~~lVtGGG~~GlM~a~a~gA~~~GG-~viGi~P~~~~~~e~~-~~~~~~~i~~~----~m~~Rk~~mv~-~sDa~Ivl 121 (225)
....||.|+|+.|++ +..-|+..|. +|+++..... ..+.. .-..+.++... ++.++-..+.. ..|++|=.
T Consensus 199 g~~VlV~G~G~vG~~--a~q~ak~~G~~~Vi~~~~~~~-r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~ 275 (381)
T PLN02740 199 GSSVAIFGLGAVGLA--VAEGARARGASKIIGVDINPE-KFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFEC 275 (381)
T ss_pred CCEEEEECCCHHHHH--HHHHHHHCCCCcEEEEcCChH-HHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEEC
Confidence 356788887765655 4556777887 5888743211 00100 00112222221 13332222221 35777767
Q ss_pred cCCCCcHHHHHHHH
Q 027323 122 PGGYGTLEELLEVI 135 (225)
Q Consensus 122 pGG~GTL~El~~~~ 135 (225)
.|+..++.+.+..+
T Consensus 276 ~G~~~~~~~a~~~~ 289 (381)
T PLN02740 276 AGNVEVLREAFLST 289 (381)
T ss_pred CCChHHHHHHHHhh
Confidence 77666666665443
No 250
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=25.55 E-value=2.1e+02 Score=24.95 Aligned_cols=33 Identities=27% Similarity=0.575 Sum_probs=21.9
Q ss_pred cCeEEEecCCCCcHHHHHHHHHHHHhCCCCC-ceEEEec
Q 027323 115 ADAFIALPGGYGTLEELLEVITWAQLGIHDK-PVGLLNV 152 (225)
Q Consensus 115 sDa~IvlpGG~GTL~El~~~~~~~qlg~~~k-Piill~~ 152 (225)
.| +|+.-||=||+.|+...+. +...+ |+.++..
T Consensus 58 ~d-~ivv~GGDGTl~~v~~~l~----~~~~~~~lgiiP~ 91 (293)
T TIGR00147 58 VD-TVIAGGGDGTINEVVNALI----QLDDIPALGILPL 91 (293)
T ss_pred CC-EEEEECCCChHHHHHHHHh----cCCCCCcEEEEcC
Confidence 45 5667899999999987662 11233 6766653
No 251
>PRK06849 hypothetical protein; Provisional
Probab=25.53 E-value=4.1e+02 Score=24.27 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=21.8
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC
Q 027323 17 RFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGG 58 (225)
Q Consensus 17 ~~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGGG 58 (225)
..++|-|.|++.. .+..++|.|.+.|+.++....
T Consensus 3 ~~~~VLI~G~~~~--------~~l~iar~l~~~G~~Vi~~d~ 36 (389)
T PRK06849 3 TKKTVLITGARAP--------AALELARLFHNAGHTVILADS 36 (389)
T ss_pred CCCEEEEeCCCcH--------HHHHHHHHHHHCCCEEEEEeC
Confidence 4567888754432 245677777778888775543
No 252
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=25.46 E-value=4.6e+02 Score=22.97 Aligned_cols=74 Identities=9% Similarity=0.038 Sum_probs=45.9
Q ss_pred HHhhcCcceEEEEcCCCCCC---ChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHH--HHHHHhcCCcEEEEecCccc
Q 027323 12 AALKSRFKRVCVFCGSSPGK---SPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLV--SQAVYDGGRHVLGVIPKTLM 86 (225)
Q Consensus 12 ~~~~~~~~~I~VfggS~~~~---~~~~~~~A~~lG~~LA~~g~~lVtGGG~~GlM~a~--a~gA~~~GG~viGi~P~~~~ 86 (225)
........-|.|.|+++... .++..+..+.+.+ -+.....|+.|-|....-+++ ++.|.++|...+-++|..+.
T Consensus 30 ~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~-~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~ 108 (292)
T PRK03170 30 YLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVE-AVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYYN 108 (292)
T ss_pred HHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHH-HhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcCC
Confidence 33445566777776665542 4555444444444 344557888887754665555 57788889888888776543
No 253
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=25.46 E-value=1.6e+02 Score=27.98 Aligned_cols=69 Identities=19% Similarity=0.275 Sum_probs=38.1
Q ss_pred CeEEEcCCCcchHHHHHHHHHhcCCcEEEEecCccccCCCC-CCCCceEEecCCHHHHHHHHHHhcCeEEEecCCCCcHH
Q 027323 51 IDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREIT-GDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLE 129 (225)
Q Consensus 51 ~~lVtGGG~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~-~~~~~~~i~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~ 129 (225)
..+|.|.|+.|+. +++-++..|.+|+.+-++... .+.. ...+ +.+ .+. . .+..+|.+|...|..++++
T Consensus 204 tVvViG~G~IG~~--va~~ak~~Ga~ViV~d~d~~R-~~~A~~~G~-~~~---~~~---e-~v~~aDVVI~atG~~~~i~ 272 (413)
T cd00401 204 VAVVAGYGDVGKG--CAQSLRGQGARVIVTEVDPIC-ALQAAMEGY-EVM---TME---E-AVKEGDIFVTTTGNKDIIT 272 (413)
T ss_pred EEEEECCCHHHHH--HHHHHHHCCCEEEEEECChhh-HHHHHhcCC-EEc---cHH---H-HHcCCCEEEECCCCHHHHH
Confidence 4567888887764 455667778888776332110 0111 1111 111 222 2 2357898888888777666
Q ss_pred H
Q 027323 130 E 130 (225)
Q Consensus 130 E 130 (225)
+
T Consensus 273 ~ 273 (413)
T cd00401 273 G 273 (413)
T ss_pred H
Confidence 4
No 254
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=25.32 E-value=2.6e+02 Score=26.12 Aligned_cols=74 Identities=15% Similarity=0.235 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCeEEEec--CCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEEc
Q 027323 106 QRKAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 183 (225)
Q Consensus 106 ~Rk~~mv~~sDa~Ivlp--GG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~ 183 (225)
+....+...||++|.-. .|+|. =++|+++ .++|||..+.+|. .+++ + .. .......++-.
T Consensus 323 ~ev~~~~~~aDv~V~pS~~E~~g~--~vlEAmA------~G~PVI~s~~gg~-~eiv---~----~~--~~~~~G~lv~~ 384 (465)
T PLN02871 323 DELSQAYASGDVFVMPSESETLGF--VVLEAMA------SGVPVVAARAGGI-PDII---P----PD--QEGKTGFLYTP 384 (465)
T ss_pred HHHHHHHHHCCEEEECCcccccCc--HHHHHHH------cCCCEEEcCCCCc-Hhhh---h----cC--CCCCceEEeCC
Confidence 44555678999887532 34443 2556664 4799998876543 2221 1 10 00122233445
Q ss_pred CCHHHHHHHHHhhc
Q 027323 184 QTAHELICKLEEYV 197 (225)
Q Consensus 184 ~d~ee~~~~l~~~~ 197 (225)
+|++++.+.|.+..
T Consensus 385 ~d~~~la~~i~~ll 398 (465)
T PLN02871 385 GDVDDCVEKLETLL 398 (465)
T ss_pred CCHHHHHHHHHHHH
Confidence 68888887777654
No 255
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=25.27 E-value=2.8e+02 Score=23.42 Aligned_cols=72 Identities=15% Similarity=0.307 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCeEEEe---cCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEE
Q 027323 106 QRKAEMARQADAFIAL---PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVS 182 (225)
Q Consensus 106 ~Rk~~mv~~sDa~Ivl---pGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~ 182 (225)
+...-+...||++|.- ..|+|. =++|++. .++|++..+..+. .++ +.. .....++-
T Consensus 254 ~~~~~~~~~ad~~i~ps~~~e~~~~--~~~Ea~a------~G~Pvi~~~~~~~----~e~----i~~-----~~~g~~~~ 312 (359)
T cd03823 254 EEIDDFYAEIDVLVVPSIWPENFPL--VIREALA------AGVPVIASDIGGM----AEL----VRD-----GVNGLLFP 312 (359)
T ss_pred HHHHHHHHhCCEEEEcCcccCCCCh--HHHHHHH------CCCCEEECCCCCH----HHH----hcC-----CCcEEEEC
Confidence 4445567889987753 244553 2556664 4799998765432 222 111 11234455
Q ss_pred cCCHHHHHHHHHhhcC
Q 027323 183 AQTAHELICKLEEYVP 198 (225)
Q Consensus 183 ~~d~ee~~~~l~~~~~ 198 (225)
.+|++++.+.+.+...
T Consensus 313 ~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 313 PGDAEDLAAALERLID 328 (359)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 6678999988887654
No 256
>PRK00625 shikimate kinase; Provisional
Probab=25.22 E-value=2.2e+02 Score=23.33 Aligned_cols=77 Identities=21% Similarity=0.138 Sum_probs=40.0
Q ss_pred HHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCcEEEEe-c-Cccc----cCCCCCCCCceE-EecCCHHHHHHHHHH
Q 027323 41 QLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVI-P-KTLM----PREITGDTVGEV-KAVSGMHQRKAEMAR 113 (225)
Q Consensus 41 ~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi~-P-~~~~----~~e~~~~~~~~~-i~~~~m~~Rk~~mv~ 113 (225)
++-+.+...+..|.+|||. ++..-+...+..+|.||-+- | +... .+..... .... .+.+-+..|....-+
T Consensus 65 ~~l~~l~~~~~VIs~GGg~--~~~~e~~~~l~~~~~Vv~L~~~~e~l~~Rl~~R~~~~~-~~~~~~~~~ll~~R~~~Y~~ 141 (173)
T PRK00625 65 LALTSLPVIPSIVALGGGT--LMIEPSYAHIRNRGLLVLLSLPIATIYQRLQKRGLPER-LKHAPSLEEILSQRIDRMRS 141 (173)
T ss_pred HHHHHhccCCeEEECCCCc--cCCHHHHHHHhcCCEEEEEECCHHHHHHHHhcCCCCcc-cCcHHHHHHHHHHHHHHHHH
Confidence 3334555566677788875 44445555677778877663 2 1111 1111110 1000 112234788888777
Q ss_pred hcCeEEE
Q 027323 114 QADAFIA 120 (225)
Q Consensus 114 ~sDa~Iv 120 (225)
.||..|-
T Consensus 142 ~ad~~i~ 148 (173)
T PRK00625 142 IADYIFS 148 (173)
T ss_pred HCCEEEe
Confidence 7998764
No 257
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=25.19 E-value=2.4e+02 Score=23.60 Aligned_cols=64 Identities=19% Similarity=0.165 Sum_probs=35.2
Q ss_pred EEEcCCCcchHHHH-HHHHHhcCCcEEEEecCccccCCCCCCCCceEEec---CCHHHHHHHHHHhcCeEEEe
Q 027323 53 LVYGGGSIGLMGLV-SQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAV---SGMHQRKAEMARQADAFIAL 121 (225)
Q Consensus 53 lVtGGG~~GlM~a~-a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~i~~---~~m~~Rk~~mv~~sDa~Ivl 121 (225)
.++=-. .|-|+.+ ++.|...|..|+=|.-... .+.++..+.+.+ .+|.+.-......+|++|..
T Consensus 22 ~ItN~S-SG~~G~~lA~~~~~~Ga~V~li~g~~~----~~~p~~~~~i~v~sa~em~~~~~~~~~~~Di~I~a 89 (185)
T PF04127_consen 22 FITNRS-SGKMGAALAEEAARRGAEVTLIHGPSS----LPPPPGVKVIRVESAEEMLEAVKELLPSADIIIMA 89 (185)
T ss_dssp EEEES---SHHHHHHHHHHHHTT-EEEEEE-TTS--------TTEEEEE-SSHHHHHHHHHHHGGGGSEEEE-
T ss_pred EecCCC-cCHHHHHHHHHHHHCCCEEEEEecCcc----ccccccceEEEecchhhhhhhhccccCcceeEEEe
Confidence 344444 4999865 7788889999888853221 111223344444 35666666666778887753
No 258
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=25.17 E-value=83 Score=28.81 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=32.6
Q ss_pred ccchhHHHHHHHHHHcCCCCcccccc---eEEcCCHHHHHHHHHhh
Q 027323 154 GYYNSLLSFIDKAVDEGFIAPAARYI---IVSAQTAHELICKLEEY 196 (225)
Q Consensus 154 g~w~~l~~~l~~~~~~g~i~~~~~~~---i~~~~d~ee~~~~l~~~ 196 (225)
.+|+-+..-+..|+.+|.|+++..+. -++..+++|+.+.+++-
T Consensus 198 ~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~ 243 (334)
T PF03492_consen 198 MLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEE 243 (334)
T ss_dssp CHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcC
Confidence 36888888889999999999998865 36688999999988873
No 259
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=25.17 E-value=1.5e+02 Score=24.84 Aligned_cols=34 Identities=15% Similarity=0.200 Sum_probs=24.0
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027323 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (225)
Q Consensus 18 ~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lV 54 (225)
|+.|+|+ +...+.... -.|..|+..||++|+.++
T Consensus 1 m~iI~v~-s~KGGvGKT--t~a~nla~~la~~g~~Vl 34 (246)
T TIGR03371 1 MKVIAIV-GVKGGVGKT--TLTANLASALKLLGEPVL 34 (246)
T ss_pred CcEEEEE-eCCCCccHH--HHHHHHHHHHHhCCCcEE
Confidence 4578887 445555554 357899999999997554
No 260
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.10 E-value=1.7e+02 Score=26.29 Aligned_cols=51 Identities=24% Similarity=0.230 Sum_probs=31.2
Q ss_pred hcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecC--ccc-----hhHHHHHHHHHHcC
Q 027323 114 QADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD--GYY-----NSLLSFIDKAVDEG 170 (225)
Q Consensus 114 ~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~--g~w-----~~l~~~l~~~~~~g 170 (225)
.+|. |+.-||=||+--.+..+ ...++||+-+|.+ ||. +.+.+.++++.+..
T Consensus 64 ~~Dl-vi~iGGDGT~L~aa~~~-----~~~~~PilGIN~G~lGFLt~~~~~~~~~~l~~i~~g~ 121 (287)
T PRK14077 64 ISDF-LISLGGDGTLISLCRKA-----AEYDKFVLGIHAGHLGFLTDITVDEAEKFFQAFFQGE 121 (287)
T ss_pred CCCE-EEEECCCHHHHHHHHHh-----cCCCCcEEEEeCCCcccCCcCCHHHHHHHHHHHHcCC
Confidence 4674 55568899965544332 2357899878764 465 45566666655443
No 261
>PLN02591 tryptophan synthase
Probab=24.88 E-value=3.8e+02 Score=23.59 Aligned_cols=40 Identities=23% Similarity=0.546 Sum_probs=25.5
Q ss_pred cHHHHHHHHHHHHhC-CCCCceEEEecCccchhH-----HHHHHHHHHcCC
Q 027323 127 TLEELLEVITWAQLG-IHDKPVGLLNVDGYYNSL-----LSFIDKAVDEGF 171 (225)
Q Consensus 127 TL~El~~~~~~~qlg-~~~kPiill~~~g~w~~l-----~~~l~~~~~~g~ 171 (225)
|++.+++.+. ++. ..+.|++++. ||+++ .+|++.+.+.|.
T Consensus 62 ~~~~~~~~~~--~~r~~~~~p~ilm~---Y~N~i~~~G~~~F~~~~~~aGv 107 (250)
T PLN02591 62 TLDSVISMLK--EVAPQLSCPIVLFT---YYNPILKRGIDKFMATIKEAGV 107 (250)
T ss_pred CHHHHHHHHH--HHhcCCCCCEEEEe---cccHHHHhHHHHHHHHHHHcCC
Confidence 5677777663 333 3567988873 77754 446777776664
No 262
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=24.82 E-value=1.1e+02 Score=25.53 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=18.8
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHH
Q 027323 18 FKRVCVFCGSSPGKSPSYQLAAIQLG 43 (225)
Q Consensus 18 ~~~I~VfggS~~~~~~~~~~~A~~lG 43 (225)
+++|+|||||=.+.+.-+...|+++-
T Consensus 3 ~~~i~i~gGsFdP~H~GH~~l~~~a~ 28 (203)
T PRK00071 3 MKRIGLFGGTFDPPHYGHLAIAEEAA 28 (203)
T ss_pred CcEEEEEeeCCCccCHHHHHHHHHHH
Confidence 45799999999887776765555443
No 263
>cd00114 LIGANc NAD+ dependent DNA ligase adenylation domain. DNA ligases catalyze the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor, but using the same basic reaction mechanism. The enzyme reacts with the cofactor to form a phosphoamide-linked AMP with the amino group of a conserved Lysine in the KXDG motif, and subsequently transfers it to the DNA substrate to yield adenylated DNA. This alignment contains members of the NAD+ dependent subfamily only.
Probab=24.73 E-value=1.2e+02 Score=27.59 Aligned_cols=61 Identities=15% Similarity=0.162 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHcCCCCcccccceEEcCCHHHHHHHHHhhc--------CCCCCCcccccccccccccccccc
Q 027323 158 SLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEEYV--------PKHSGVASNLSWEMEQQLGYTNKS 221 (225)
Q Consensus 158 ~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~l~~~~--------~~~~~~~~~~~w~~~~~~~~~~~~ 221 (225)
.-.+.|+.+.+.||-... ....+++.+|+.++++++. +.+.-|..-=+..-+..+|+|+|+
T Consensus 228 t~~e~l~~L~~~GF~v~~---~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGiViKvn~~~~~~~lG~tsk~ 296 (307)
T cd00114 228 TQSEALAFLKEWGFPVSP---ETRLCKNIEEVLAFYDEIEAKRDSLPYEIDGVVVKVDDLALQRELGFTSKA 296 (307)
T ss_pred CHHHHHHHHHHCCCCCCC---CeEEeCCHHHHHHHHHHHHHhhhcCCCCCCcEEEEEeCHHHHHHhCccCCC
Confidence 345556667788886544 5667888999999888762 222223333345555678888764
No 264
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=24.71 E-value=5.6e+02 Score=23.71 Aligned_cols=107 Identities=14% Similarity=0.177 Sum_probs=65.4
Q ss_pred HhhcCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE-EEcCCCcchHHHHHHHHHhcCCcEEEEec-CccccCCC
Q 027323 13 ALKSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL-VYGGGSIGLMGLVSQAVYDGGRHVLGVIP-KTLMPREI 90 (225)
Q Consensus 13 ~~~~~~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~l-VtGGG~~GlM~a~a~gA~~~GG~viGi~P-~~~~~~e~ 90 (225)
......-++=|.+-.+....+. ....+-++.|.+.|+.+ +|-.-. + ..++...+.|. +.|.| .....-
T Consensus 162 ~~~~~~iKlEvi~e~~~llpd~--~~~v~aa~~L~~~Gf~v~~yc~~d--~--~~a~~l~~~g~--~avmPl~~pIGs-- 231 (326)
T PRK11840 162 AGGWDLVKLEVLGDAKTLYPDM--VETLKATEILVKEGFQVMVYCSDD--P--IAAKRLEDAGA--VAVMPLGAPIGS-- 231 (326)
T ss_pred hcCCCeEEEEEcCCCCCcccCH--HHHHHHHHHHHHCCCEEEEEeCCC--H--HHHHHHHhcCC--EEEeeccccccC--
Confidence 3344555677886555433222 24567788899999999 666533 3 33344444554 66766 332110
Q ss_pred CCCCCceEEecCCHHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHH
Q 027323 91 TGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITW 137 (225)
Q Consensus 91 ~~~~~~~~i~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~El~~~~~~ 137 (225)
...+. =.+.-+.+++..+.-|++.+|+||-+....++.+
T Consensus 232 -g~gv~-------~p~~i~~~~e~~~vpVivdAGIg~~sda~~Amel 270 (326)
T PRK11840 232 -GLGIQ-------NPYTIRLIVEGATVPVLVDAGVGTASDAAVAMEL 270 (326)
T ss_pred -CCCCC-------CHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHc
Confidence 11111 1344556667789999999999999999998854
No 265
>PRK07102 short chain dehydrogenase; Provisional
Probab=24.57 E-value=1e+02 Score=25.63 Aligned_cols=32 Identities=13% Similarity=0.206 Sum_probs=19.0
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 027323 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (225)
Q Consensus 18 ~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGG 57 (225)
|++|.|.|+++. ....+.+.|+++|+.|+--+
T Consensus 1 ~~~vlItGas~g--------iG~~~a~~l~~~G~~Vi~~~ 32 (243)
T PRK07102 1 MKKILIIGATSD--------IARACARRYAAAGARLYLAA 32 (243)
T ss_pred CcEEEEEcCCcH--------HHHHHHHHHHhcCCEEEEEe
Confidence 356777765532 23456667777787765443
No 266
>PRK08210 aspartate kinase I; Reviewed
Probab=24.47 E-value=1.3e+02 Score=27.93 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=21.9
Q ss_pred eEEE-EcCCCCCCChHHHHHHHHHHHHHHHCCCe---EEEcCCC
Q 027323 20 RVCV-FCGSSPGKSPSYQLAAIQLGKQLVERNID---LVYGGGS 59 (225)
Q Consensus 20 ~I~V-fggS~~~~~~~~~~~A~~lG~~LA~~g~~---lVtGGG~ 59 (225)
.|-| ||||...+.+...+.++.+.+++. .|+. |+.|+|.
T Consensus 3 ~iViK~GGs~l~~~~~~~~~~~~i~~~~~-~g~~~vvV~sa~g~ 45 (403)
T PRK08210 3 IIVQKFGGTSVSTEERRKMAVNKIKKALK-EGYKVVVVVSAMGR 45 (403)
T ss_pred eEEEeECCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEeCCCC
Confidence 3444 888887655555556666665553 4432 3455544
No 267
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=24.44 E-value=3e+02 Score=23.64 Aligned_cols=70 Identities=11% Similarity=0.072 Sum_probs=40.9
Q ss_pred HHHHHHhcCeEEEec--CCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEEcCC
Q 027323 108 KAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT 185 (225)
Q Consensus 108 k~~mv~~sDa~Ivlp--GG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d 185 (225)
...+...||++|.-. .|+|. =++|+++ .++|||..+..|. . +.+. . ....+...++
T Consensus 260 ~~~~~~~adi~v~ps~~E~~~~--~~lEAma------~G~PvI~s~~~~~-~---~~i~---------~-~~~~~~~~~~ 317 (358)
T cd03812 260 VPELLQAMDVFLFPSLYEGLPL--VLIEAQA------SGLPCILSDTITK-E---VDLT---------D-LVKFLSLDES 317 (358)
T ss_pred HHHHHHhcCEEEecccccCCCH--HHHHHHH------hCCCEEEEcCCch-h---hhhc---------c-CccEEeCCCC
Confidence 344678899877532 23332 3566664 4899999876542 1 1111 1 1123444556
Q ss_pred HHHHHHHHHhhcCC
Q 027323 186 AHELICKLEEYVPK 199 (225)
Q Consensus 186 ~ee~~~~l~~~~~~ 199 (225)
++++.+.|.+....
T Consensus 318 ~~~~a~~i~~l~~~ 331 (358)
T cd03812 318 PEIWAEEILKLKSE 331 (358)
T ss_pred HHHHHHHHHHHHhC
Confidence 79998988886533
No 268
>PF07442 Ponericin: Ponericin; InterPro: IPR010002 This family contains a number of ponericin peptides (approximately 30 residues long) from the venom of the predatory ant Pachycondyla goeldii (Ponerine ant). These peptides exhibit antibacterial and insecticidal properties, and may adopt an amphipathic alpha-helical structure in polar environments such as cell membranes [].; GO: 0005576 extracellular region
Probab=24.43 E-value=1.6e+02 Score=17.36 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHH
Q 027323 37 LAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAV 70 (225)
Q Consensus 37 ~~A~~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA 70 (225)
+-...-|.+|-+. || |+|.|+...|
T Consensus 4 dw~k~~~~wlkkk--------gp-gi~kaal~aa 28 (29)
T PF07442_consen 4 DWLKKAGEWLKKK--------GP-GILKAALKAA 28 (29)
T ss_pred HHHHHHHHHHHhc--------Cc-hHHHHHHHhc
Confidence 3445667777764 57 9999988765
No 269
>PRK14557 pyrH uridylate kinase; Provisional
Probab=24.35 E-value=1.1e+02 Score=26.78 Aligned_cols=43 Identities=21% Similarity=0.458 Sum_probs=23.6
Q ss_pred CcceEEE-EcCCCCCCCh---HHHHHHHHHHHHHH---HCCC--eEEEcCCC
Q 027323 17 RFKRVCV-FCGSSPGKSP---SYQLAAIQLGKQLV---ERNI--DLVYGGGS 59 (225)
Q Consensus 17 ~~~~I~V-fggS~~~~~~---~~~~~A~~lG~~LA---~~g~--~lVtGGG~ 59 (225)
+.++|.+ |+|+....+. .-.+..+++.+.|+ +.|+ .||.|||.
T Consensus 3 ~~~riViKlGG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGgGn 54 (247)
T PRK14557 3 PYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGN 54 (247)
T ss_pred cccEEEEEeCceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECCcH
Confidence 4456666 7887764321 00124455565555 4554 57788863
No 270
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=24.34 E-value=1.8e+02 Score=26.74 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=24.9
Q ss_pred eEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEe-----cCccchhHHHHHHHHH
Q 027323 117 AFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN-----VDGYYNSLLSFIDKAV 167 (225)
Q Consensus 117 a~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~-----~~g~w~~l~~~l~~~~ 167 (225)
|+|.|-||-|| .+|. ..|=.++. ..-|++-..+.+..+.
T Consensus 2 a~vllaGG~GT-----------RLG~-~~pKg~~~v~~~~~~s~f~l~~~~i~~l~ 45 (315)
T cd06424 2 VFVLVAGGLGE-----------RLGY-SGIKIGLPVELTTNTTYLQYYLNYIRAFQ 45 (315)
T ss_pred EEEEecCCCcc-----------ccCC-CCCceeeeccCCCCCcHHHHHHHHHHHHH
Confidence 78999999999 4553 23333332 2337777777766554
No 271
>PRK05854 short chain dehydrogenase; Provisional
Probab=24.32 E-value=1.1e+02 Score=27.05 Aligned_cols=21 Identities=10% Similarity=0.267 Sum_probs=14.9
Q ss_pred HHHHHHHHHHCCCeEEEcCCC
Q 027323 39 AIQLGKQLVERNIDLVYGGGS 59 (225)
Q Consensus 39 A~~lG~~LA~~g~~lVtGGG~ 59 (225)
..++++.|+++|+.|+..+..
T Consensus 27 G~~~a~~La~~G~~Vil~~R~ 47 (313)
T PRK05854 27 GLGLARRLAAAGAEVILPVRN 47 (313)
T ss_pred HHHHHHHHHHCCCEEEEEeCC
Confidence 356777788899988765543
No 272
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=24.27 E-value=67 Score=28.64 Aligned_cols=31 Identities=19% Similarity=0.152 Sum_probs=22.3
Q ss_pred CCeEEEcCCCcchHHHHHHHHHhcCCcEEEEec
Q 027323 50 NIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIP 82 (225)
Q Consensus 50 g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi~P 82 (225)
...||+|+|..|.+ +..-|+..|.+++.+..
T Consensus 167 ~~VlV~G~g~iG~~--a~~~a~~~G~~vi~~~~ 197 (329)
T TIGR02822 167 GRLGLYGFGGSAHL--TAQVALAQGATVHVMTR 197 (329)
T ss_pred CEEEEEcCCHHHHH--HHHHHHHCCCeEEEEeC
Confidence 46788887665644 55678888888888754
No 273
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.21 E-value=2.9e+02 Score=24.18 Aligned_cols=53 Identities=17% Similarity=0.268 Sum_probs=31.9
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe----------------EEEcCCCcchHHHHHHHHHhcCCcEEEEe
Q 027323 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNID----------------LVYGGGSIGLMGLVSQAVYDGGRHVLGVI 81 (225)
Q Consensus 19 ~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~----------------lVtGGG~~GlM~a~a~gA~~~GG~viGi~ 81 (225)
|.++|| .+.. -.+.+.++-++|.++|+. +|+=||. |.|-.+++-+ +-.++||-
T Consensus 1 m~~~~~--~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vi~iGGD-GT~L~a~~~~---~~Pilgin 69 (256)
T PRK14075 1 MKLGIF--YREE----KEKEAKFLKEKISKEHEVVEFCEASASGKVTADLIIVVGGD-GTVLKAAKKV---GTPLVGFK 69 (256)
T ss_pred CEEEEE--eCcc----HHHHHHHHHHHHHHcCCeeEeecccccccCCCCEEEEECCc-HHHHHHHHHc---CCCEEEEe
Confidence 357777 2221 235677888888877642 3333445 7776665544 66788873
No 274
>PRK09267 flavodoxin FldA; Validated
Probab=23.82 E-value=84 Score=25.17 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=17.5
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHH
Q 027323 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLV 47 (225)
Q Consensus 18 ~~~I~VfggS~~~~~~~~~~~A~~lG~~LA 47 (225)
|++|.|+.+|..++.. +.|+.+++.|.
T Consensus 1 mmki~IiY~S~tGnT~---~vA~~Ia~~l~ 27 (169)
T PRK09267 1 MAKIGIFFGSDTGNTE---DIAKMIQKKLG 27 (169)
T ss_pred CCeEEEEEECCCChHH---HHHHHHHHHhC
Confidence 4578888888887532 34666666653
No 275
>PRK10494 hypothetical protein; Provisional
Probab=23.82 E-value=3.3e+02 Score=23.95 Aligned_cols=15 Identities=13% Similarity=0.087 Sum_probs=7.9
Q ss_pred eEEcCCHHHHHHHHH
Q 027323 180 IVSAQTAHELICKLE 194 (225)
Q Consensus 180 i~~~~d~ee~~~~l~ 194 (225)
+.+++|+--+-+.+.
T Consensus 181 iiLVTsa~Hm~RA~~ 195 (259)
T PRK10494 181 FLLVTSASHLPRAMI 195 (259)
T ss_pred EEEECCHHHHHHHHH
Confidence 555666654444433
No 276
>PRK06180 short chain dehydrogenase; Provisional
Probab=23.75 E-value=1.1e+02 Score=26.25 Aligned_cols=33 Identities=15% Similarity=-0.058 Sum_probs=22.1
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC
Q 027323 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGG 58 (225)
Q Consensus 18 ~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGGG 58 (225)
.++|.|.|+++. ..+.+.+.|+++|+.|+..+-
T Consensus 4 ~~~vlVtGasgg--------iG~~la~~l~~~G~~V~~~~r 36 (277)
T PRK06180 4 MKTWLITGVSSG--------FGRALAQAALAAGHRVVGTVR 36 (277)
T ss_pred CCEEEEecCCCh--------HHHHHHHHHHhCcCEEEEEeC
Confidence 356888876652 245677778888988776553
No 277
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=23.72 E-value=1.1e+02 Score=25.33 Aligned_cols=31 Identities=23% Similarity=0.195 Sum_probs=18.2
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 027323 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (225)
Q Consensus 19 ~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGG 57 (225)
++|-|.|+++. ....+++.|+++|+.++.-+
T Consensus 6 k~vlItGas~g--------IG~~ia~~l~~~G~~vi~~~ 36 (248)
T TIGR01832 6 KVALVTGANTG--------LGQGIAVGLAEAGADIVGAG 36 (248)
T ss_pred CEEEEECCCch--------HHHHHHHHHHHCCCEEEEEc
Confidence 45666655431 23456677777787766444
No 278
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=23.59 E-value=3.8e+02 Score=21.31 Aligned_cols=79 Identities=23% Similarity=0.183 Sum_probs=52.8
Q ss_pred HHHHHhcCCcEEEEecCccccCCCCCCCCceEEecCCHHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCc
Q 027323 67 SQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKP 146 (225)
Q Consensus 67 a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~i~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kP 146 (225)
..++.+.||.++.+-|.... ... -+++.+=-+.|-..+|++|+=.-.-++++|+.+.. ..|
T Consensus 58 e~A~~~LGg~~i~~~~~~s~---~~k--------~Esl~Dtar~ls~~~D~iv~R~~~~~~~~~~a~~~--------~vP 118 (142)
T PF02729_consen 58 EAAANRLGGHVIYLDPSTSS---LGK--------GESLEDTARVLSRYVDAIVIRHPSHGALEELAEHS--------SVP 118 (142)
T ss_dssp HHHHHHTTCEEEEEETTTSS---TTT--------SSEHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHC--------SSE
T ss_pred HHhhhcceeEEEEECccccc---CcC--------CCCHHHHHHHHHHhhheEEEEeccchHHHHHHHhc--------cCC
Confidence 44567889999999654321 001 23444444577788999999888889999987543 689
Q ss_pred eEEEecCccchhHHHHHHH
Q 027323 147 VGLLNVDGYYNSLLSFIDK 165 (225)
Q Consensus 147 iill~~~g~w~~l~~~l~~ 165 (225)
||=... ..+.|-..+++-
T Consensus 119 VINa~~-~~~HPtQaL~Dl 136 (142)
T PF02729_consen 119 VINAGD-DHEHPTQALADL 136 (142)
T ss_dssp EEEEEE-SSBSHHHHHHHH
T ss_pred eEcCcC-CCCChHHHHHHH
Confidence 875433 467777766653
No 279
>PRK00358 pyrH uridylate kinase; Provisional
Probab=23.53 E-value=1.1e+02 Score=25.87 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=23.2
Q ss_pred HHHHHHHhcCeEEEecCC----CCcHHHHHHHHHHHHhCCCCCceE-EEecCccch
Q 027323 107 RKAEMARQADAFIALPGG----YGTLEELLEVITWAQLGIHDKPVG-LLNVDGYYN 157 (225)
Q Consensus 107 Rk~~mv~~sDa~IvlpGG----~GTL~El~~~~~~~qlg~~~kPii-ll~~~g~w~ 157 (225)
+-..+.+... +.|++|+ ++|=|.++..++- .+ ...-++ +-+.+|.|+
T Consensus 112 ~~~~~l~~g~-vPVv~g~~~~~~~ssD~~A~~lA~-~l--~A~~li~~tdVdGVy~ 163 (231)
T PRK00358 112 RAIRHLEKGR-VVIFAAGTGNPFFTTDTAAALRAE-EI--GADVLLKATNVDGVYD 163 (231)
T ss_pred HHHHHHHCCC-EEEEECCCCCCCCCchHHHHHHHH-Hc--CCCEEEEeeCcCceEc
Confidence 3333344444 4455444 3566666655532 22 233444 447788774
No 280
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=23.49 E-value=99 Score=21.86 Aligned_cols=40 Identities=20% Similarity=0.367 Sum_probs=31.9
Q ss_pred chhHHHHHHHHHHcCCCCcccccceEEcCCHHHHHHHHHhh
Q 027323 156 YNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEEY 196 (225)
Q Consensus 156 w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~l~~~ 196 (225)
|+.+..+|+.+.+.|+|.. ....+.+++--.++++.++++
T Consensus 33 ~~~~~~yL~~L~~~gLI~~-~~~~Y~lTekG~~~l~~l~~~ 72 (77)
T PF14947_consen 33 YSTLKKYLKELEEKGLIKK-KDGKYRLTEKGKEFLEELEEL 72 (77)
T ss_dssp HHHHHHHHHHHHHTTSEEE-ETTEEEE-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCeeC-CCCEEEECccHHHHHHHHHHH
Confidence 5678888999999999944 566788888888888888775
No 281
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=23.49 E-value=2.3e+02 Score=26.15 Aligned_cols=39 Identities=36% Similarity=0.416 Sum_probs=26.5
Q ss_pred HhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCc
Q 027323 113 RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 154 (225)
Q Consensus 113 ~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g 154 (225)
..=|.+|++||+.||..-+..-+ .+++ +..+||=++..+
T Consensus 179 ~~fD~vVva~gs~gT~AGl~~g~--~~~~-~~~~ViG~~v~~ 217 (323)
T COG2515 179 LKFDSVVVAPGSGGTHAGLLVGL--AQLG-PDVEVIGIDVSA 217 (323)
T ss_pred cCCCEEEEeCCCcchHHHHHHHh--hhcc-CCCceEEEeecC
Confidence 34589999999999988776544 3433 456666666544
No 282
>PRK07308 flavodoxin; Validated
Probab=23.48 E-value=1.1e+02 Score=24.00 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=21.4
Q ss_pred HhcCeEEEecCCC--CcHH-HHHHHHHHHH-hCCCCCceEEEecC
Q 027323 113 RQADAFIALPGGY--GTLE-ELLEVITWAQ-LGIHDKPVGLLNVD 153 (225)
Q Consensus 113 ~~sDa~IvlpGG~--GTL~-El~~~~~~~q-lg~~~kPiill~~~ 153 (225)
..+|++|+....+ |.+. .+...+.+.+ ....++++.+++.+
T Consensus 47 ~~~d~vi~g~~t~g~G~~p~~~~~fl~~l~~~~l~~k~~~vfG~G 91 (146)
T PRK07308 47 EDADIAIVATYTYGDGELPDEIVDFYEDLADLDLSGKIYGVVGSG 91 (146)
T ss_pred ccCCEEEEEeCccCCCCCCHHHHHHHHHHhcCCCCCCEEEEEeeC
Confidence 3456666644433 4554 3444443322 22457888888753
No 283
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=23.23 E-value=2e+02 Score=23.39 Aligned_cols=58 Identities=14% Similarity=0.179 Sum_probs=32.6
Q ss_pred cCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE--cCC---CcchHHHHHHHHHhcCCcEE
Q 027323 16 SRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVY--GGG---SIGLMGLVSQAVYDGGRHVL 78 (225)
Q Consensus 16 ~~~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVt--GGG---~~GlM~a~a~gA~~~GG~vi 78 (225)
.+.++|.|+||+.. .- --+..++|.|+++|+.+.. -+- ........-+-+.+.|+.++
T Consensus 23 ~~~~~v~il~G~Gn----NG-gDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 85 (169)
T PF03853_consen 23 PKGPRVLILCGPGN----NG-GDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKII 85 (169)
T ss_dssp CTT-EEEEEE-SSH----HH-HHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEE
T ss_pred cCCCeEEEEECCCC----Ch-HHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEe
Confidence 55678999998863 12 2356789999999998754 211 11333333444555665543
No 284
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=23.23 E-value=1.2e+02 Score=25.94 Aligned_cols=48 Identities=19% Similarity=0.362 Sum_probs=23.7
Q ss_pred HHHHHHHHhcCeEEEecCCCC----cHHHHHHHHHHHHhCCCCCceE-EEecCccch
Q 027323 106 QRKAEMARQADAFIALPGGYG----TLEELLEVITWAQLGIHDKPVG-LLNVDGYYN 157 (225)
Q Consensus 106 ~Rk~~mv~~sDa~IvlpGG~G----TL~El~~~~~~~qlg~~~kPii-ll~~~g~w~ 157 (225)
++-..+.+.+. ++|++|+.| |=|.++..++. .+ ...-++ +-+.+|.|+
T Consensus 111 ~~l~~~l~~g~-ipV~~g~~G~~~~~~D~~a~~lA~-~l--~a~~l~~~tdVdGvy~ 163 (231)
T cd04254 111 RRAIRHLEKGR-VVIFAGGTGNPFFTTDTAAALRAI-EI--NADVILKATKVDGVYD 163 (231)
T ss_pred HHHHHHHHCCC-EEEEECCcCCCCCCcHHHHHHHHH-Hc--CCCEEEEEeCCCEEEe
Confidence 44455555555 455666544 33555544431 22 233444 457777774
No 285
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=23.09 E-value=2.6e+02 Score=21.00 Aligned_cols=53 Identities=17% Similarity=0.145 Sum_probs=35.8
Q ss_pred CCCceEEEecCccchhHHHHHHH-HHHcCCCCcccccceEEcCCHHHHHHHHHhhc
Q 027323 143 HDKPVGLLNVDGYYNSLLSFIDK-AVDEGFIAPAARYIIVSAQTAHELICKLEEYV 197 (225)
Q Consensus 143 ~~kPiill~~~g~w~~l~~~l~~-~~~~g~i~~~~~~~i~~~~d~ee~~~~l~~~~ 197 (225)
+-+|++.++.+|.-+.+++-++. +-....|.-...... -+|..|+.+.|++..
T Consensus 15 ~l~p~v~IGK~Glt~~vi~ei~~aL~~hELIKVkvl~~~--~~~~~e~a~~i~~~~ 68 (95)
T TIGR00253 15 HLKPVVLVGKNGLTEGVIKEIEQALEHRELIKVKVATED--REDKTLIAEALVKET 68 (95)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHhCCcEEEEecCCC--hhHHHHHHHHHHHHH
Confidence 45999999999999999999865 555555553322111 245667777777643
No 286
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.04 E-value=1e+02 Score=26.53 Aligned_cols=30 Identities=30% Similarity=0.469 Sum_probs=26.5
Q ss_pred CeEEEcCCCcchHHHHHHHHHhcCCcEEEEe
Q 027323 51 IDLVYGGGSIGLMGLVSQAVYDGGRHVLGVI 81 (225)
Q Consensus 51 ~~lVtGGG~~GlM~a~a~gA~~~GG~viGi~ 81 (225)
..+|||.|. |+=.+.+..-.++|.+||.+.
T Consensus 9 ~vlvTgaga-GIG~~~v~~La~aGA~ViAva 38 (245)
T KOG1207|consen 9 IVLVTGAGA-GIGKEIVLSLAKAGAQVIAVA 38 (245)
T ss_pred EEEeecccc-cccHHHHHHHHhcCCEEEEEe
Confidence 457899986 999999999999999999983
No 287
>PRK07890 short chain dehydrogenase; Provisional
Probab=23.01 E-value=4e+02 Score=22.04 Aligned_cols=54 Identities=22% Similarity=0.194 Sum_probs=0.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCcEEEE
Q 027323 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (225)
Q Consensus 19 ~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi 80 (225)
++|.|.|+++. ..+.+++.|+++|+.|+..+....-.+...+.....+.++..+
T Consensus 6 k~vlItGa~~~--------IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~ 59 (258)
T PRK07890 6 KVVVVSGVGPG--------LGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAV 59 (258)
T ss_pred CEEEEECCCCc--------HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEE
No 288
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=23.01 E-value=4.2e+02 Score=27.11 Aligned_cols=46 Identities=15% Similarity=0.129 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCcEEEEe
Q 027323 35 YQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVI 81 (225)
Q Consensus 35 ~~~~A~~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi~ 81 (225)
+...+.=+...|+..||.+++|++. ---+.+++.|++.+..+++|.
T Consensus 595 H~~ra~fv~~~l~~~GfeV~~~~~~-~s~e~~v~aa~~~~a~ivvlc 640 (714)
T PRK09426 595 HDRGAKVIATAFADLGFDVDIGPLF-QTPEEAARQAVENDVHVVGVS 640 (714)
T ss_pred hhHhHHHHHHHHHhCCeeEecCCCC-CCHHHHHHHHHHcCCCEEEEe
Confidence 5556666778888899999988765 556788999999999999983
No 289
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=22.94 E-value=5.5e+02 Score=23.56 Aligned_cols=90 Identities=14% Similarity=0.037 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHH--hcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCC------
Q 027323 102 SGMHQRKAEMAR--QADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIA------ 173 (225)
Q Consensus 102 ~~m~~Rk~~mv~--~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~------ 173 (225)
.++.+=.+.|.+ ..+++++..-+.|+.+|-...+- .....+|||+.|-. |-+.+.-.-+. ..|-|-
T Consensus 210 ~~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~e~~aa~fi--~~~~~~KPVVa~~a-Grsap~G~r~g---HaGAi~~~~~G~ 283 (317)
T PTZ00187 210 TNFIDCLKLFLNDPETEGIILIGEIGGTAEEEAAEWI--KNNPIKKPVVSFIA-GITAPPGRRMG---HAGAIISGGKGT 283 (317)
T ss_pred CCHHHHHHHHhhCCCccEEEEEEecCCchhHHHHHHH--HhhcCCCcEEEEEe-cCCCCCCCccc---chhhhhccCCCC
Confidence 355555566654 45677777777888865543332 21224799999854 34442111111 111111
Q ss_pred cc------cccceEEcCCHHHHHHHHHhhc
Q 027323 174 PA------ARYIIVSAQTAHELICKLEEYV 197 (225)
Q Consensus 174 ~~------~~~~i~~~~d~ee~~~~l~~~~ 197 (225)
.+ ...=++.++|++|+.+.+++.+
T Consensus 284 ~~~k~aal~qaGv~v~~~~~el~~~~~~~~ 313 (317)
T PTZ00187 284 APGKIEALEAAGVRVVKSPAQLGKTMLEVM 313 (317)
T ss_pred HHHHHHHHHHCCCeEeCCHHHHHHHHHHHH
Confidence 00 1123788999999999998764
No 290
>PRK13055 putative lipid kinase; Reviewed
Probab=22.87 E-value=2.3e+02 Score=25.66 Aligned_cols=31 Identities=29% Similarity=0.553 Sum_probs=20.6
Q ss_pred CeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEE
Q 027323 116 DAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 150 (225)
Q Consensus 116 Da~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill 150 (225)
| .|++-||=||++|+...+. ... ...|+.++
T Consensus 61 d-~vvv~GGDGTl~evvngl~--~~~-~~~~Lgii 91 (334)
T PRK13055 61 D-LIIAAGGDGTINEVVNGIA--PLE-KRPKMAII 91 (334)
T ss_pred C-EEEEECCCCHHHHHHHHHh--hcC-CCCcEEEE
Confidence 5 5567799999999987762 111 23567666
No 291
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=22.84 E-value=2.5e+02 Score=22.29 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=27.7
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 027323 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (225)
Q Consensus 18 ~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGG 57 (225)
+++|.++|-...+..| .|+.+.+.++..++.+-+.|
T Consensus 2 ~~kVLFVC~gN~cRSp----mAE~l~~~~~~~~~~v~SAG 37 (139)
T COG0394 2 MMKVLFVCTGNICRSP----MAEALLRHLAPDNVEVDSAG 37 (139)
T ss_pred CceEEEEcCCCcccCH----HHHHHHHHhccCCeEEECCc
Confidence 5678888877777554 57889999988778877666
No 292
>PRK07035 short chain dehydrogenase; Provisional
Probab=22.74 E-value=1.2e+02 Score=25.31 Aligned_cols=31 Identities=16% Similarity=0.143 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 027323 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (225)
Q Consensus 19 ~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGG 57 (225)
++|.|.|+|+. ....+++.|+++|+.|+--+
T Consensus 9 k~vlItGas~g--------IG~~l~~~l~~~G~~Vi~~~ 39 (252)
T PRK07035 9 KIALVTGASRG--------IGEAIAKLLAQQGAHVIVSS 39 (252)
T ss_pred CEEEEECCCcH--------HHHHHHHHHHHCCCEEEEEe
Confidence 46777765532 23567777888888877444
No 293
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=22.65 E-value=87 Score=26.89 Aligned_cols=39 Identities=13% Similarity=0.026 Sum_probs=21.4
Q ss_pred cceEEEEcCCCCCCC-hHHHHHHHHHHHHHHHCCCeEEEcC
Q 027323 18 FKRVCVFCGSSPGKS-PSYQLAAIQLGKQLVERNIDLVYGG 57 (225)
Q Consensus 18 ~~~I~VfggS~~~~~-~~~~~~A~~lG~~LA~~g~~lVtGG 57 (225)
|++|+|+.+|...-+ -+..| +..-=..|-+.|+.+..=+
T Consensus 1 ~kkVlills~~~~~dG~e~~E-~~~P~~~L~~aG~~V~~aS 40 (217)
T PRK11780 1 MKKIAVILSGCGVYDGSEIHE-AVLTLLALDRAGAEAVCFA 40 (217)
T ss_pred CCEEEEEEccCCCCCCEehhH-HHHHHHHHHHCCCEEEEEe
Confidence 357888865332211 11222 2345567778899887644
No 294
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=22.63 E-value=84 Score=26.74 Aligned_cols=52 Identities=13% Similarity=0.216 Sum_probs=30.9
Q ss_pred cCeEEEecCCCCcHHHHHHHHHHHHhC----------CCCCceEEEecCccchhHHHHHHHHH
Q 027323 115 ADAFIALPGGYGTLEELLEVITWAQLG----------IHDKPVGLLNVDGYYNSLLSFIDKAV 167 (225)
Q Consensus 115 sDa~IvlpGG~GTL~El~~~~~~~qlg----------~~~kPiill~~~g~w~~l~~~l~~~~ 167 (225)
+--+|=+--|.---.-|..++-++..+ +..+|+|==|. |||+.++++=+++.
T Consensus 95 G~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~-GFw~QLi~YE~qL~ 156 (198)
T KOG1718|consen 95 GKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNV-GFWRQLIDYEQQLF 156 (198)
T ss_pred CcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCc-cHHHHHHHHHHHhc
Confidence 344555566665555555555333221 13589877665 79999998854443
No 295
>KOG4321 consensus Predicted phosphate acyltransferases [Lipid transport and metabolism]
Probab=22.57 E-value=1.1e+02 Score=26.02 Aligned_cols=30 Identities=30% Similarity=0.430 Sum_probs=25.7
Q ss_pred HHHHHHHHHhcCeEEEecCCCCcHHHHHHH
Q 027323 105 HQRKAEMARQADAFIALPGGYGTLEELLEV 134 (225)
Q Consensus 105 ~~Rk~~mv~~sDa~IvlpGG~GTL~El~~~ 134 (225)
-.|.+++...+|-|+.---|+||.+|.|.+
T Consensus 68 lqrerliytigdrflfklpgwgtiseafhv 97 (279)
T KOG4321|consen 68 LQRERLIYTIGDRFLFKLPGWGTISEAFHV 97 (279)
T ss_pred HhhhhheEeecceeEEeCCCccchhhhhcc
Confidence 688888889999999876789999998864
No 296
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=22.43 E-value=1.1e+02 Score=27.52 Aligned_cols=30 Identities=30% Similarity=0.520 Sum_probs=21.5
Q ss_pred CeEEEecCCCCcHHHHHHHHHHHHhCCCCCc-eEEE
Q 027323 116 DAFIALPGGYGTLEELLEVITWAQLGIHDKP-VGLL 150 (225)
Q Consensus 116 Da~IvlpGG~GTL~El~~~~~~~qlg~~~kP-iill 150 (225)
.-.|+..||=||++|+...+. .++.| +.++
T Consensus 59 ~D~via~GGDGTv~evingl~-----~~~~~~Lgil 89 (301)
T COG1597 59 YDTVIAAGGDGTVNEVANGLA-----GTDDPPLGIL 89 (301)
T ss_pred CCEEEEecCcchHHHHHHHHh-----cCCCCceEEe
Confidence 336777899999999998773 24455 6665
No 297
>PRK07454 short chain dehydrogenase; Provisional
Probab=22.35 E-value=4.4e+02 Score=21.60 Aligned_cols=58 Identities=12% Similarity=0.067 Sum_probs=0.0
Q ss_pred hcCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCcEEEE
Q 027323 15 KSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (225)
Q Consensus 15 ~~~~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi 80 (225)
..+++++.|.|+++. ....+.+.|+++|+.++.-+-+..-...+.+...+.++.+.-+
T Consensus 3 ~~~~k~vlItG~sg~--------iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~ 60 (241)
T PRK07454 3 LNSMPRALITGASSG--------IGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAY 60 (241)
T ss_pred CCCCCEEEEeCCCch--------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEE
No 298
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=22.32 E-value=3.5e+02 Score=23.48 Aligned_cols=68 Identities=19% Similarity=0.244 Sum_probs=38.3
Q ss_pred HHHHHhcCeEEEec--CCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEEcCCH
Q 027323 109 AEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTA 186 (225)
Q Consensus 109 ~~mv~~sDa~Ivlp--GG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ 186 (225)
.-+...||++|.-. .|+|.- +.|+++ .++|+|..+..+. ..+ +.+ .....++-.+|+
T Consensus 265 ~~~~~~~d~~v~ps~~E~~~~~--~~EAma------~g~PvI~s~~~~~-~e~-------i~~-----~~~G~~~~~~~~ 323 (371)
T cd04962 265 EELLSIADLFLLPSEKESFGLA--ALEAMA------CGVPVVASNAGGI-PEV-------VKH-----GETGFLVDVGDV 323 (371)
T ss_pred HHHHHhcCEEEeCCCcCCCccH--HHHHHH------cCCCEEEeCCCCc-hhh-------hcC-----CCceEEcCCCCH
Confidence 34567899887642 455532 556664 4799999876543 211 111 111223334578
Q ss_pred HHHHHHHHhhc
Q 027323 187 HELICKLEEYV 197 (225)
Q Consensus 187 ee~~~~l~~~~ 197 (225)
+++.+.+.+..
T Consensus 324 ~~l~~~i~~l~ 334 (371)
T cd04962 324 EAMAEYALSLL 334 (371)
T ss_pred HHHHHHHHHHH
Confidence 88777777654
No 299
>PRK05866 short chain dehydrogenase; Provisional
Probab=22.30 E-value=3.4e+02 Score=23.65 Aligned_cols=54 Identities=20% Similarity=0.238 Sum_probs=0.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCcEEEE
Q 027323 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (225)
Q Consensus 19 ~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi 80 (225)
++|-|.|+++. ....+++.|+++|+.|+..+....-.+.+.+.....++.+..+
T Consensus 41 k~vlItGasgg--------IG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~ 94 (293)
T PRK05866 41 KRILLTGASSG--------IGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAV 94 (293)
T ss_pred CEEEEeCCCcH--------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEE
No 300
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=22.20 E-value=6.3e+02 Score=23.37 Aligned_cols=64 Identities=16% Similarity=0.051 Sum_probs=41.3
Q ss_pred hhcCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCcEEEE
Q 027323 14 LKSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (225)
Q Consensus 14 ~~~~~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi 80 (225)
....-++|+|+++++..+... ..++|=+.+.+.|+.|+.=+-+..-+-..+..++.....+|=+
T Consensus 155 ~~Pnak~Igv~Y~p~E~ns~~---l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~ 218 (322)
T COG2984 155 LLPNAKSIGVLYNPGEANSVS---LVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYI 218 (322)
T ss_pred hCCCCeeEEEEeCCCCcccHH---HHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEEE
Confidence 445557899999888765443 3467777777899999977665455555555555544444433
No 301
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=22.18 E-value=6.3e+02 Score=23.37 Aligned_cols=36 Identities=39% Similarity=0.353 Sum_probs=22.8
Q ss_pred HHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCcc
Q 027323 109 AEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGY 155 (225)
Q Consensus 109 ~~mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~ 155 (225)
...+..||++|.-.| .-| .|+. . .++|+|++-..+.
T Consensus 291 ~~~l~~ADlvI~rSG-t~T-~E~a---~------lg~P~Ilip~~~~ 326 (396)
T TIGR03492 291 AEILHWADLGIAMAG-TAT-EQAV---G------LGKPVIQLPGKGP 326 (396)
T ss_pred HHHHHhCCEEEECcC-HHH-HHHH---H------hCCCEEEEeCCCC
Confidence 345688998888765 344 4433 1 3799999863333
No 302
>PRK11096 ansB L-asparaginase II; Provisional
Probab=22.09 E-value=1.2e+02 Score=28.03 Aligned_cols=49 Identities=24% Similarity=0.348 Sum_probs=33.5
Q ss_pred HhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEec-----CccchhHHHHHH
Q 027323 113 RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV-----DGYYNSLLSFID 164 (225)
Q Consensus 113 ~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~-----~g~w~~l~~~l~ 164 (225)
+..|+|||.. |.-||+|....+.+. ++ .+||||+.+. .-..|...++..
T Consensus 99 ~~~dGiVVtH-GTDTme~tA~~Ls~~-~~-~~kPVVlTGAmrP~~~~~sDg~~NL~~ 152 (347)
T PRK11096 99 DKTDGFVITH-GTDTMEETAYFLDLT-VK-CDKPVVLVGAMRPSTAMSADGPLNLYN 152 (347)
T ss_pred CCCCEEEEeC-CCchHHHHHHHHHHh-cc-CCCCEEEeCCCCCCCCcCCchHHHHHH
Confidence 3467777765 589999999988774 33 4899999863 224555555544
No 303
>PRK08339 short chain dehydrogenase; Provisional
Probab=22.01 E-value=1.4e+02 Score=25.49 Aligned_cols=18 Identities=11% Similarity=0.235 Sum_probs=12.2
Q ss_pred HHHHHHHHHCCCeEEEcC
Q 027323 40 IQLGKQLVERNIDLVYGG 57 (225)
Q Consensus 40 ~~lG~~LA~~g~~lVtGG 57 (225)
..+++.|+++|+.|+.-+
T Consensus 22 ~aia~~l~~~G~~V~~~~ 39 (263)
T PRK08339 22 FGVARVLARAGADVILLS 39 (263)
T ss_pred HHHHHHHHHCCCEEEEEe
Confidence 456777777888766443
No 304
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=21.97 E-value=2.2e+02 Score=22.94 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=8.2
Q ss_pred HHHHHHHHHhcCCcEEEEe
Q 027323 63 MGLVSQAVYDGGRHVLGVI 81 (225)
Q Consensus 63 M~a~a~gA~~~GG~viGi~ 81 (225)
|+.+.+-..+.|..++|-.
T Consensus 100 ~~~l~~~l~~~G~~~ig~~ 118 (167)
T TIGR01752 100 MGILYDKIKARGAKVVGFW 118 (167)
T ss_pred HHHHHHHHHHcCCeEEcee
Confidence 3333333334455555543
No 305
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=21.93 E-value=1.2e+02 Score=25.89 Aligned_cols=124 Identities=21% Similarity=0.255 Sum_probs=56.4
Q ss_pred HHHHHHHHHHCCCeEE-EcCCCcchHHHHHHHHHhcCCcEEEEecCcc----ccCCCCCCCCceEEecCCHHHHHHHHHH
Q 027323 39 AIQLGKQLVERNIDLV-YGGGSIGLMGLVSQAVYDGGRHVLGVIPKTL----MPREITGDTVGEVKAVSGMHQRKAEMAR 113 (225)
Q Consensus 39 A~~lG~~LA~~g~~lV-tGGG~~GlM~a~a~gA~~~GG~viGi~P~~~----~~~e~~~~~~~~~i~~~~m~~Rk~~mv~ 113 (225)
|-.|+++==+.|=.|+ -|+|. |-+..-.- ..--.+++++|--+.. ..+....-.+..+.+..+-. -+.+-.
T Consensus 24 al~ls~L~~~~g~~l~DIGaGt-Gsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~A--p~~L~~ 99 (187)
T COG2242 24 ALTLSKLRPRPGDRLWDIGAGT-GSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDA--PEALPD 99 (187)
T ss_pred HHHHHhhCCCCCCEEEEeCCCc-cHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccc--hHhhcC
Confidence 4445554444555555 57775 65543332 3345679999931100 00000011122233322111 112223
Q ss_pred h--cCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCC
Q 027323 114 Q--ADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFI 172 (225)
Q Consensus 114 ~--sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i 172 (225)
. -| .|+++|| |+++|+++++ |..+..-+ -++.|-- --+.+...++.+.+.|+.
T Consensus 100 ~~~~d-aiFIGGg-~~i~~ile~~-~~~l~~gg--rlV~nai-tlE~~~~a~~~~~~~g~~ 154 (187)
T COG2242 100 LPSPD-AIFIGGG-GNIEEILEAA-WERLKPGG--RLVANAI-TLETLAKALEALEQLGGR 154 (187)
T ss_pred CCCCC-EEEECCC-CCHHHHHHHH-HHHcCcCC--eEEEEee-cHHHHHHHHHHHHHcCCc
Confidence 3 34 4556666 9999999987 44332111 3444532 123333444555565653
No 306
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=21.93 E-value=3.9e+02 Score=22.44 Aligned_cols=69 Identities=19% Similarity=0.214 Sum_probs=40.0
Q ss_pred HHHHHHHhcCeEEEec--CCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEEcC
Q 027323 107 RKAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQ 184 (225)
Q Consensus 107 Rk~~mv~~sDa~Ivlp--GG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 184 (225)
...-+...||++|.-. .|+|+ =+.|+++ .++|+|..+..|+ .+++.+ .. .++.-+
T Consensus 274 ~~~~~~~~adv~v~ps~~e~~~~--~~~Eama------~G~PvI~~~~~~~----~~~~~~--~~---------~~~~~~ 330 (375)
T cd03821 274 DKAAALADADLFVLPSHSENFGI--VVAEALA------CGTPVVTTDKVPW----QELIEY--GC---------GWVVDD 330 (375)
T ss_pred HHHHHHhhCCEEEeccccCCCCc--HHHHHHh------cCCCEEEcCCCCH----HHHhhc--Cc---------eEEeCC
Confidence 3444567799877643 45665 3566664 5799999876542 222221 12 234455
Q ss_pred CHHHHHHHHHhhcC
Q 027323 185 TAHELICKLEEYVP 198 (225)
Q Consensus 185 d~ee~~~~l~~~~~ 198 (225)
+++++.+.|.+...
T Consensus 331 ~~~~~~~~i~~l~~ 344 (375)
T cd03821 331 DVDALAAALRRALE 344 (375)
T ss_pred ChHHHHHHHHHHHh
Confidence 66777777776543
No 307
>PRK05867 short chain dehydrogenase; Provisional
Probab=21.89 E-value=4.3e+02 Score=21.93 Aligned_cols=54 Identities=15% Similarity=0.206 Sum_probs=0.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCcEEEE
Q 027323 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (225)
Q Consensus 19 ~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi 80 (225)
+++-|.|+++. ...++.+.|+++|+.|+..+....-.+...+...+.++++..+
T Consensus 10 k~vlVtGas~g--------IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~ 63 (253)
T PRK05867 10 KRALITGASTG--------IGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPV 63 (253)
T ss_pred CEEEEECCCch--------HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEE
No 308
>PRK07109 short chain dehydrogenase; Provisional
Probab=21.88 E-value=3.2e+02 Score=24.44 Aligned_cols=54 Identities=13% Similarity=0.143 Sum_probs=32.1
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCcEEEE
Q 027323 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (225)
Q Consensus 19 ~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi 80 (225)
++|.|.|+|+- ....+++.|+++|+.|+.-+...--.+.+.+...+.|+++..+
T Consensus 9 k~vlITGas~g--------IG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v 62 (334)
T PRK07109 9 QVVVITGASAG--------VGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAV 62 (334)
T ss_pred CEEEEECCCCH--------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEE
Confidence 56777766542 2456888888999998765533222233334444556666655
No 309
>PF09929 DUF2161: Uncharacterized conserved protein (DUF2161); InterPro: IPR018679 This family of various hypothetical prokaryotic proteins has no known function.
Probab=21.87 E-value=2e+02 Score=22.72 Aligned_cols=17 Identities=24% Similarity=0.432 Sum_probs=8.3
Q ss_pred hHHHHHHHHHHHHHHHC
Q 027323 33 PSYQLAAIQLGKQLVER 49 (225)
Q Consensus 33 ~~~~~~A~~lG~~LA~~ 49 (225)
..|.+.|-..+..|+++
T Consensus 55 TAYRQ~Al~~A~~L~~~ 71 (118)
T PF09929_consen 55 TAYRQDALRCAAALAEH 71 (118)
T ss_pred hhhHHHHHHHHHHHHHc
Confidence 44555555555555543
No 310
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=21.81 E-value=5.5e+02 Score=22.55 Aligned_cols=30 Identities=23% Similarity=0.269 Sum_probs=20.1
Q ss_pred CCeEEEcCCCcchHHHHHHHHHhcCC-cEEEEe
Q 027323 50 NIDLVYGGGSIGLMGLVSQAVYDGGR-HVLGVI 81 (225)
Q Consensus 50 g~~lVtGGG~~GlM~a~a~gA~~~GG-~viGi~ 81 (225)
...+|+|+| ++=.++..-|+..|. +++.+.
T Consensus 174 ~~vlI~g~g--~vG~~a~q~a~~~G~~~v~~~~ 204 (351)
T cd08233 174 DTALVLGAG--PIGLLTILALKAAGASKIIVSE 204 (351)
T ss_pred CEEEEECCC--HHHHHHHHHHHHcCCCEEEEEC
Confidence 466788764 444556777888887 677764
No 311
>PRK08105 flavodoxin; Provisional
Probab=21.73 E-value=1.9e+02 Score=23.06 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=21.1
Q ss_pred HHHHHHHHHHC-------CCeEEEcCCC------cchHHHHHHHHHhcCCcEEE
Q 027323 39 AIQLGKQLVER-------NIDLVYGGGS------IGLMGLVSQAVYDGGRHVLG 79 (225)
Q Consensus 39 A~~lG~~LA~~-------g~~lVtGGG~------~GlM~a~a~gA~~~GG~viG 79 (225)
+.++-+.|.+. .|. |.|-|. .+.+..+.+-..+.|+..++
T Consensus 68 ~~~f~~~l~~~~~~l~~~~~a-vfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~ 120 (149)
T PRK08105 68 IVPLFQALKDTAGYQPNLRYG-VIALGDSSYDNFCGAGKQFDALLQEQGAKRVG 120 (149)
T ss_pred HHHHHHHHHhcCcccCCCEEE-EEeeecCCHHHHHHHHHHHHHHHHHCCCeEee
Confidence 44555555442 344 556665 33444444445557777776
No 312
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=21.72 E-value=2.9e+02 Score=24.35 Aligned_cols=8 Identities=25% Similarity=0.684 Sum_probs=3.7
Q ss_pred EEEecCCC
Q 027323 118 FIALPGGY 125 (225)
Q Consensus 118 ~IvlpGG~ 125 (225)
.|++.||-
T Consensus 84 ~ilvSGg~ 91 (239)
T PRK10834 84 YLLLSGDN 91 (239)
T ss_pred EEEEeCCC
Confidence 34444443
No 313
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=21.67 E-value=3e+02 Score=22.41 Aligned_cols=46 Identities=15% Similarity=0.235 Sum_probs=29.2
Q ss_pred HHHHHhhcCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027323 9 QAAAALKSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (225)
Q Consensus 9 ~~~~~~~~~~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lV 54 (225)
...+..+-+-++|++|+-+....++.|.+...+-.+.+...+..++
T Consensus 58 ~~~fl~~l~~KkV~lF~T~G~~~~s~~~~~~~~~~~~~~~~~~~~l 103 (160)
T PF12641_consen 58 MKEFLKKLKGKKVALFGTAGAGPDSEYAKKILKNVEALLPKGNEIL 103 (160)
T ss_pred HHHHHHHccCCeEEEEEecCCCCchHHHHHHHHHHHHhhccCCeec
Confidence 3445555566789999777666677777666655555555554443
No 314
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=21.61 E-value=1.6e+02 Score=26.22 Aligned_cols=40 Identities=30% Similarity=0.605 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHH-HHHHHHc
Q 027323 127 TLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSF-IDKAVDE 169 (225)
Q Consensus 127 TL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~-l~~~~~~ 169 (225)
|++.+++.+.-..-.....|++++. ||+++..+ ++.++++
T Consensus 70 ~~~~~~~~~~~ir~~~~~~pivlm~---Y~N~i~~~G~e~F~~~ 110 (259)
T PF00290_consen 70 TLEKIFELVKEIRKKEPDIPIVLMT---YYNPIFQYGIERFFKE 110 (259)
T ss_dssp -HHHHHHHHHHHHHHCTSSEEEEEE----HHHHHHH-HHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCCCEEEEe---eccHHhccchHHHHHH
No 315
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=21.58 E-value=1.4e+02 Score=27.84 Aligned_cols=42 Identities=24% Similarity=0.115 Sum_probs=22.3
Q ss_pred cCcceEEE-EcCCCCCC-----C-hHHHHHHHHHHHHHHHCCC--eEEEcCC
Q 027323 16 SRFKRVCV-FCGSSPGK-----S-PSYQLAAIQLGKQLVERNI--DLVYGGG 58 (225)
Q Consensus 16 ~~~~~I~V-fggS~~~~-----~-~~~~~~A~~lG~~LA~~g~--~lVtGGG 58 (225)
+.+++|.| ||||.... + +...+.|+++.++. ++|+ .||+||+
T Consensus 3 ~~~kriVIKiGgs~L~~~~~~l~~~~i~~la~~I~~l~-~~G~~vvlVsSGa 53 (368)
T PRK13402 3 SNWKRIVVKVGSSLLTPHHQGCSSHYLLGLVQQIVYLK-DQGHQVVLVSSGA 53 (368)
T ss_pred CCCcEEEEEEchhhccCCCCCcCHHHHHHHHHHHHHHH-HCCCEEEEEeCCh
Confidence 34556666 77666542 2 23333444444332 5565 5678886
No 316
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=21.57 E-value=66 Score=28.55 Aligned_cols=116 Identities=14% Similarity=0.154 Sum_probs=57.9
Q ss_pred hcCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCcEEEEecCccccCCCCCCC
Q 027323 15 KSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDT 94 (225)
Q Consensus 15 ~~~~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~ 94 (225)
....-++=|.+....-- |.-.+ ..+-.+.|.+.||.+.-=..+ .-.+++--.++|..++ .|-.- | +..+
T Consensus 90 ~t~wIKLEVi~D~~~L~-PD~~e-tl~Aae~Lv~eGF~VlPY~~~---D~v~akrL~d~Gcaav--MPlgs-P--IGSg- 158 (247)
T PF05690_consen 90 GTNWIKLEVIGDDKTLL-PDPIE-TLKAAEILVKEGFVVLPYCTD---DPVLAKRLEDAGCAAV--MPLGS-P--IGSG- 158 (247)
T ss_dssp S-SEEEE--BS-TTT---B-HHH-HHHHHHHHHHTT-EEEEEE-S----HHHHHHHHHTT-SEB--EEBSS-S--TTT--
T ss_pred CCCeEEEEEeCCCCCcC-CChhH-HHHHHHHHHHCCCEEeecCCC---CHHHHHHHHHCCCCEE--Eeccc-c--cccC-
Confidence 33444566665544321 22222 346677888888888722222 3456676777776643 33211 1 1111
Q ss_pred CceEEecCCHHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEec
Q 027323 95 VGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 152 (225)
Q Consensus 95 ~~~~i~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~ 152 (225)
.-+ .+ ..--+++++.++.-|++-+|+||.++..+++.+ +-=-+|+|.
T Consensus 159 --~Gi--~n-~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMEl------G~daVLvNT 205 (247)
T PF05690_consen 159 --RGI--QN-PYNLRIIIERADVPVIVDAGIGTPSDAAQAMEL------GADAVLVNT 205 (247)
T ss_dssp ----S--ST-HHHHHHHHHHGSSSBEEES---SHHHHHHHHHT------T-SEEEESH
T ss_pred --cCC--CC-HHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHc------CCceeehhh
Confidence 000 01 233566778889999999999999999999864 344456664
No 317
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=21.53 E-value=1.2e+02 Score=27.10 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=11.3
Q ss_pred HHHHHHHHHCCCeEEEc
Q 027323 40 IQLGKQLVERNIDLVYG 56 (225)
Q Consensus 40 ~~lG~~LA~~g~~lVtG 56 (225)
+.+++.||++|+.||..
T Consensus 24 ~a~A~~la~~Ga~Vvv~ 40 (299)
T PRK06300 24 WGIAKALAEAGATILVG 40 (299)
T ss_pred HHHHHHHHHCCCEEEEE
Confidence 45666677777777763
No 318
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.49 E-value=1.3e+02 Score=24.73 Aligned_cols=31 Identities=13% Similarity=0.188 Sum_probs=17.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 027323 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (225)
Q Consensus 19 ~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGG 57 (225)
+++.|.|+++. ....+++.|+++|+.++.-.
T Consensus 6 ~~~lItG~~g~--------iG~~~a~~l~~~G~~vi~~~ 36 (253)
T PRK08217 6 KVIVITGGAQG--------LGRAMAEYLAQKGAKLALID 36 (253)
T ss_pred CEEEEECCCch--------HHHHHHHHHHHCCCEEEEEe
Confidence 35666655432 13456666677777665443
No 319
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=21.49 E-value=3.1e+02 Score=23.15 Aligned_cols=67 Identities=15% Similarity=0.033 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHh-CCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEEcC
Q 027323 106 QRKAEMARQADAFIALPGGYGTLEELLEVITWAQL-GIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQ 184 (225)
Q Consensus 106 ~Rk~~mv~~sDa~IvlpGG~GTL~El~~~~~~~ql-g~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 184 (225)
++....++.+|.+|+++ -.++.. -++.+... ...+.|++++|.+.-.- + ....+.+..
T Consensus 156 ~~~~~~~~~~dl~lvlG-Tsl~v~---p~~~l~~~~~~~~~~~i~iN~~~~~~---------------~--~~~~~~i~g 214 (224)
T cd01412 156 LEAVEALAKADLFLVIG-TSGVVY---PAAGLPEEAKERGARVIEINPEPTPL---------------S--PIADFAFRG 214 (224)
T ss_pred HHHHHHHHcCCEEEEEC-cCccch---hHHHHHHHHHHCCCeEEEECCCCCCC---------------C--CcCCEEEEC
Confidence 34444557899888865 334333 22222221 13578999999763211 1 223467778
Q ss_pred CHHHHHHHH
Q 027323 185 TAHELICKL 193 (225)
Q Consensus 185 d~ee~~~~l 193 (225)
|..++++.|
T Consensus 215 ~~~~~l~~l 223 (224)
T cd01412 215 KAGEVLPAL 223 (224)
T ss_pred CHHHHHHHh
Confidence 899888765
No 320
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=21.47 E-value=1.2e+02 Score=27.58 Aligned_cols=28 Identities=21% Similarity=0.131 Sum_probs=22.0
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHH
Q 027323 20 RVCVFCGSSPGKSPSYQLAAIQLGKQLV 47 (225)
Q Consensus 20 ~I~VfggS~~~~~~~~~~~A~~lG~~LA 47 (225)
+|+|||||=.+.+--+...|++..+.+.
T Consensus 2 ~i~i~gGsFdP~H~GHl~la~~a~~~~~ 29 (342)
T PRK07152 2 KIAIFGGSFDPIHKGHINIAKKAIKKLK 29 (342)
T ss_pred eEEEEeeCCCCcCHHHHHHHHHHHHHhC
Confidence 6999999998888778777776666554
No 321
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.46 E-value=4.6e+02 Score=25.80 Aligned_cols=64 Identities=14% Similarity=0.101 Sum_probs=40.3
Q ss_pred HhhcCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE------------------------------EcCCCcch
Q 027323 13 ALKSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV------------------------------YGGGSIGL 62 (225)
Q Consensus 13 ~~~~~~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lV------------------------------tGGG~~Gl 62 (225)
..+++.++|+|+. +.. .+...+.+.++.++|.++|+.+. +=||. |-
T Consensus 285 ~w~~~~~~i~iv~--~~~-~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGD-GT 360 (569)
T PRK14076 285 KWRIKPTKFGIVS--RID-NEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIISIGGD-GT 360 (569)
T ss_pred hcccCCcEEEEEc--CCC-CHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEEECCc-HH
Confidence 3466778899993 322 35566778888888866664222 22344 66
Q ss_pred HHHHHHHHHhcCCcEEEE
Q 027323 63 MGLVSQAVYDGGRHVLGV 80 (225)
Q Consensus 63 M~a~a~gA~~~GG~viGi 80 (225)
|--+++-....+-.++||
T Consensus 361 ~L~aa~~~~~~~~PilGi 378 (569)
T PRK14076 361 VLRASKLVNGEEIPIICI 378 (569)
T ss_pred HHHHHHHhcCCCCCEEEE
Confidence 666666555556677887
No 322
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=21.29 E-value=5e+02 Score=22.85 Aligned_cols=57 Identities=14% Similarity=0.062 Sum_probs=33.5
Q ss_pred hcCeEEE-ecCCC-CcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEEcCCHHHHHH
Q 027323 114 QADAFIA-LPGGY-GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELIC 191 (225)
Q Consensus 114 ~sDa~Iv-lpGG~-GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~ 191 (225)
..|++|. =.|+. |+.+-+.-+.. .+.||+++..- ........++|++|+++
T Consensus 197 ~i~~lVtK~SG~~Gg~~eKi~AA~~------lgi~vivI~RP---------------------~~~~~~~~~~~~~el~~ 249 (256)
T TIGR00715 197 RIDAVVTKASGEQGGELEKVKAAEA------LGINVIRIARP---------------------QTIPGVAIFDDISQLNQ 249 (256)
T ss_pred CCCEEEEcCCCCccchHHHHHHHHH------cCCcEEEEeCC---------------------CCCCCCccCCCHHHHHH
Confidence 4565555 35777 44444433332 36888887532 11111355789999999
Q ss_pred HHHhhc
Q 027323 192 KLEEYV 197 (225)
Q Consensus 192 ~l~~~~ 197 (225)
++++..
T Consensus 250 ~l~~~~ 255 (256)
T TIGR00715 250 FVARLL 255 (256)
T ss_pred HHHHhc
Confidence 998754
No 323
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=21.23 E-value=1.1e+02 Score=22.79 Aligned_cols=47 Identities=11% Similarity=0.306 Sum_probs=30.6
Q ss_pred ecCccchhHHHHHHHHHHcCCCCcccccceEEc-----CCHHHHHHHHHhhcCCCC
Q 027323 151 NVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA-----QTAHELICKLEEYVPKHS 201 (225)
Q Consensus 151 ~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~-----~d~ee~~~~l~~~~~~~~ 201 (225)
..+.+.+.++..+...++. |.-.++|+.- ++|+.+++.+++++....
T Consensus 28 ~~ee~~d~lv~hF~~iteH----P~gSDLIfYP~~~~edsPegIv~~vKeWRa~nG 79 (85)
T PF01320_consen 28 KTEEEHDELVDHFEKITEH----PDGSDLIFYPEDGREDSPEGIVKEVKEWRASNG 79 (85)
T ss_dssp SSCHHHHHHHHHHHHHH------TTTTHHHHS-STTSTSSHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcCCC----CCCCceeeeCCCCCCCCHHHHHHHHHHHHHHcC
Confidence 3445777777777666542 3334555543 589999999999886654
No 324
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=21.21 E-value=2.3e+02 Score=23.48 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=26.7
Q ss_pred HHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecC
Q 027323 111 MARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD 153 (225)
Q Consensus 111 mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~ 153 (225)
+-...|++|+.|--...+.++.+-+. ..+.||++++..
T Consensus 52 i~~~~d~Iiv~~~~~~~~~~~l~~~~-----~~gIpvv~~d~~ 89 (257)
T PF13407_consen 52 ISQGVDGIIVSPVDPDSLAPFLEKAK-----AAGIPVVTVDSD 89 (257)
T ss_dssp HHTTESEEEEESSSTTTTHHHHHHHH-----HTTSEEEEESST
T ss_pred HHhcCCEEEecCCCHHHHHHHHHHHh-----hcCceEEEEecc
Confidence 34567999999888766666665543 246899888765
No 325
>PRK12367 short chain dehydrogenase; Provisional
Probab=21.13 E-value=1.4e+02 Score=25.54 Aligned_cols=15 Identities=7% Similarity=-0.013 Sum_probs=9.5
Q ss_pred CCHHHHHHHHHhhcC
Q 027323 184 QTAHELICKLEEYVP 198 (225)
Q Consensus 184 ~d~ee~~~~l~~~~~ 198 (225)
-+|+++.+.+.....
T Consensus 196 ~~~~~vA~~i~~~~~ 210 (245)
T PRK12367 196 MSADFVAKQILDQAN 210 (245)
T ss_pred CCHHHHHHHHHHHHh
Confidence 367877777665443
No 326
>PRK09291 short chain dehydrogenase; Provisional
Probab=21.10 E-value=1.4e+02 Score=24.91 Aligned_cols=32 Identities=13% Similarity=0.177 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC
Q 027323 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGG 58 (225)
Q Consensus 19 ~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGGG 58 (225)
++|.|.|+++. ....+.+.|+++|+.++....
T Consensus 3 ~~vlVtGasg~--------iG~~ia~~l~~~G~~v~~~~r 34 (257)
T PRK09291 3 KTILITGAGSG--------FGREVALRLARKGHNVIAGVQ 34 (257)
T ss_pred CEEEEeCCCCH--------HHHHHHHHHHHCCCEEEEEeC
Confidence 46888876652 245678888889999886553
No 327
>PRK07062 short chain dehydrogenase; Provisional
Probab=21.05 E-value=1.3e+02 Score=25.26 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=18.8
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 027323 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (225)
Q Consensus 19 ~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGG 57 (225)
+.+-|.|+|+. ..+++++.|+++|+.|+.-+
T Consensus 9 k~~lItGas~g--------iG~~ia~~l~~~G~~V~~~~ 39 (265)
T PRK07062 9 RVAVVTGGSSG--------IGLATVELLLEAGASVAICG 39 (265)
T ss_pred CEEEEeCCCch--------HHHHHHHHHHHCCCeEEEEe
Confidence 45666655442 23457777778888876444
No 328
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=20.99 E-value=2e+02 Score=24.50 Aligned_cols=33 Identities=18% Similarity=0.404 Sum_probs=23.9
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027323 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (225)
Q Consensus 18 ~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lV 54 (225)
|++|+|+ + .-+.... -.|..|+..||+.|+.++
T Consensus 1 m~~iav~-~-KGGvGKT--T~~~nLA~~La~~G~kVl 33 (270)
T cd02040 1 MRQIAIY-G-KGGIGKS--TTTQNLSAALAEMGKKVM 33 (270)
T ss_pred CcEEEEE-e-CCcCCHH--HHHHHHHHHHHhCCCeEE
Confidence 5679998 4 4455543 357899999999998554
No 329
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=20.96 E-value=3.9e+02 Score=23.76 Aligned_cols=66 Identities=14% Similarity=0.155 Sum_probs=36.6
Q ss_pred HHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEe-cCccchhHHHHHHHHHHcCCCCcccccceEEcCC
Q 027323 107 RKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN-VDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT 185 (225)
Q Consensus 107 Rk~~mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~-~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d 185 (225)
+...++..||++|. +.| +. +.|++. .++|++... .++. ..+ ++.| ..+.+..|
T Consensus 267 ~~~~~l~~ad~vv~-~Sg--~~--~~EA~a------~g~PvI~~~~~~~~-~e~-------~~~g-------~~~lv~~d 320 (365)
T TIGR00236 267 DFLNLAANSHLILT-DSG--GV--QEEAPS------LGKPVLVLRDTTER-PET-------VEAG-------TNKLVGTD 320 (365)
T ss_pred HHHHHHHhCCEEEE-CCh--hH--HHHHHH------cCCCEEECCCCCCC-hHH-------HhcC-------ceEEeCCC
Confidence 34445677887654 433 22 344553 479999863 3332 221 1111 12334569
Q ss_pred HHHHHHHHHhhcC
Q 027323 186 AHELICKLEEYVP 198 (225)
Q Consensus 186 ~ee~~~~l~~~~~ 198 (225)
++++.+.+.+.+.
T Consensus 321 ~~~i~~ai~~ll~ 333 (365)
T TIGR00236 321 KENITKAAKRLLT 333 (365)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998887653
No 330
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=20.96 E-value=1.3e+02 Score=25.86 Aligned_cols=48 Identities=17% Similarity=0.313 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCeEEEecCC----CCcHHHHHHHHHHHHhCCCCCceE-EEe-cCccch
Q 027323 106 QRKAEMARQADAFIALPGG----YGTLEELLEVITWAQLGIHDKPVG-LLN-VDGYYN 157 (225)
Q Consensus 106 ~Rk~~mv~~sDa~IvlpGG----~GTL~El~~~~~~~qlg~~~kPii-ll~-~~g~w~ 157 (225)
+.-..+++... +++++|+ +.|=|+++..++. .+ ...-++ +-+ .+|.|+
T Consensus 112 ~~i~~ll~~g~-VpV~~g~~g~~~~s~D~~a~~lA~-~l--~a~~li~~td~VdGvy~ 165 (233)
T TIGR02075 112 RKAIKHLEKGK-VVIFSGGTGNPFFTTDTAAALRAI-EI--NADVILKGTNGVDGVYT 165 (233)
T ss_pred HHHHHHHHCCC-EEEEECCCCCCCCCchHHHHHHHH-Hc--CCCEEEEeecccCeEEc
Confidence 33334445545 4566565 4555666655542 22 233343 457 777765
No 331
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=20.94 E-value=63 Score=30.61 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCC----------cchHHHHHHHHHhcCCcEEE
Q 027323 37 LAAIQLGKQLVERNIDLVYGGGS----------IGLMGLVSQAVYDGGRHVLG 79 (225)
Q Consensus 37 ~~A~~lG~~LA~~g~~lVtGGG~----------~GlM~a~a~gA~~~GG~viG 79 (225)
+.|+.|++.|.++|+.|++||=. .|+-+..+.-+++.-|.++-
T Consensus 307 ~NAk~La~~L~~~G~~v~~ggTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~vn 359 (399)
T PF00464_consen 307 KNAKALAEALQERGFKVVTGGTDNHQVLVDLRSFGIDGKEAEKALEEAGIIVN 359 (399)
T ss_dssp HHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-E
T ss_pred HHHHHHHHHHhhCCcEEEECCCCCCeEEEEecccccchHHHHHHHHhcCeeec
Confidence 45677888888999999987621 25556666667766665554
No 332
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=20.91 E-value=1.6e+02 Score=25.79 Aligned_cols=30 Identities=17% Similarity=0.393 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 027323 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL 53 (225)
Q Consensus 19 ~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~l 53 (225)
++|.|+||+...-.+- .-++|.|.++|+.+
T Consensus 61 ~~V~VlcG~GNNGGDG-----lv~AR~L~~~G~~V 90 (246)
T PLN03050 61 PRVLLVCGPGNNGGDG-----LVAARHLAHFGYEV 90 (246)
T ss_pred CeEEEEECCCCCchhH-----HHHHHHHHHCCCeE
Confidence 5799999986532233 35788888888865
No 333
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=20.91 E-value=4.2e+02 Score=20.86 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=31.9
Q ss_pred HHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCcEEEE
Q 027323 40 IQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (225)
Q Consensus 40 ~~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi 80 (225)
.-+...|..+||.++|-|-. =-.+.+.+.|.+.+-.++++
T Consensus 21 ~iv~~~lr~~G~eVi~LG~~-vp~e~i~~~a~~~~~d~V~l 60 (137)
T PRK02261 21 KILDRALTEAGFEVINLGVM-TSQEEFIDAAIETDADAILV 60 (137)
T ss_pred HHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEE
Confidence 34556667799999999853 34688888899999999999
No 334
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.85 E-value=4.8e+02 Score=23.16 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=17.8
Q ss_pred CCeEEEcCCCcchHHHHHHHHHhcCCcEEEE
Q 027323 50 NIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (225)
Q Consensus 50 g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi 80 (225)
.+.++.|| . |.|-.+++ ....+-.++||
T Consensus 59 d~vi~iGG-D-GTlL~a~~-~~~~~~pi~gI 86 (277)
T PRK03708 59 DFIIAIGG-D-GTILRIEH-KTKKDIPILGI 86 (277)
T ss_pred CEEEEEeC-c-HHHHHHHH-hcCCCCeEEEE
Confidence 45555555 5 88876666 55555566666
No 335
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=20.82 E-value=5.3e+02 Score=23.23 Aligned_cols=85 Identities=13% Similarity=0.069 Sum_probs=38.9
Q ss_pred HHHHHhcCCcEEEEecCcc--ccCCCC------CCCCceEEecCCH-HHHHHHHHHhcCeEEEecCCCC--cHHHHHHHH
Q 027323 67 SQAVYDGGRHVLGVIPKTL--MPREIT------GDTVGEVKAVSGM-HQRKAEMARQADAFIALPGGYG--TLEELLEVI 135 (225)
Q Consensus 67 a~gA~~~GG~viGi~P~~~--~~~e~~------~~~~~~~i~~~~m-~~Rk~~mv~~sDa~IvlpGG~G--TL~El~~~~ 135 (225)
-.++.+.||.++.+-|+.. ...|.. -..+.|+++..+. +.--..+.+.|+.-|+-.|+.+ =..-|..++
T Consensus 62 e~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~~l~~~~D~iv~R~~~~~~~~~~a~~~~vPVINag~~~~HPtQaL~Dl~ 141 (304)
T PRK00779 62 EVGMAQLGGHAIFLSPRDTQLGRGEPIEDTARVLSRYVDAIMIRTFEHETLEELAEYSTVPVINGLTDLSHPCQILADLL 141 (304)
T ss_pred HHHHHHcCCcEEEECcccccCCCCcCHHHHHHHHHHhCCEEEEcCCChhHHHHHHHhCCCCEEeCCCCCCChHHHHHHHH
Confidence 3456678888888854321 001100 0112344443333 3334445566666655555421 123444555
Q ss_pred HHHH-hC-CCCCceEEEe
Q 027323 136 TWAQ-LG-IHDKPVGLLN 151 (225)
Q Consensus 136 ~~~q-lg-~~~kPiill~ 151 (225)
|+.. .| ..++-|.+++
T Consensus 142 Ti~e~~g~l~gl~i~~vG 159 (304)
T PRK00779 142 TIYEHRGSLKGLKVAWVG 159 (304)
T ss_pred HHHHHhCCcCCcEEEEEe
Confidence 5543 34 3445555554
No 336
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=20.75 E-value=1.5e+02 Score=25.57 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=16.2
Q ss_pred EcCCCCCCChHHHHHHHHHHHHHHH
Q 027323 24 FCGSSPGKSPSYQLAAIQLGKQLVE 48 (225)
Q Consensus 24 fggS~~~~~~~~~~~A~~lG~~LA~ 48 (225)
||||...+.+.+.+.++.+.++...
T Consensus 6 ~GGs~l~~~~~~~~~~~~I~~~~~~ 30 (244)
T cd04260 6 FGGTSVSTKERREQVAKKVKQAVDE 30 (244)
T ss_pred ECchhcCCHHHHHHHHHHHHHHHHC
Confidence 8888876555566666666655543
No 337
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=20.73 E-value=5.7e+02 Score=22.30 Aligned_cols=72 Identities=18% Similarity=0.179 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCcEEEEecCccccC-------CCCCCCCceEEecCCHHHHHHHHH--HhcCeEEEecCCCCcHHHHH-
Q 027323 63 MGLVSQAVYDGGRHVLGVIPKTLMPR-------EITGDTVGEVKAVSGMHQRKAEMA--RQADAFIALPGGYGTLEELL- 132 (225)
Q Consensus 63 M~a~a~gA~~~GG~viGi~P~~~~~~-------e~~~~~~~~~i~~~~m~~Rk~~mv--~~sDa~IvlpGG~GTL~El~- 132 (225)
-=|.+-+|+.-||++|-|+|+..... +.......|+++.+.- ..+|. ...| |+++-.. .+|..
T Consensus 58 tiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~---e~~~~~~~~iD-F~vVDc~---~~d~~~ 130 (218)
T PF07279_consen 58 TIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAP---EEVMPGLKGID-FVVVDCK---REDFAA 130 (218)
T ss_pred HHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCH---HHHHhhccCCC-EEEEeCC---chhHHH
Confidence 44667778889999999999865321 2222334555654432 22332 3456 6666655 45555
Q ss_pred HHHHHHHhC
Q 027323 133 EVITWAQLG 141 (225)
Q Consensus 133 ~~~~~~qlg 141 (225)
.++...+++
T Consensus 131 ~vl~~~~~~ 139 (218)
T PF07279_consen 131 RVLRAAKLS 139 (218)
T ss_pred HHHHHhccC
Confidence 555444444
No 338
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=20.73 E-value=6e+02 Score=22.58 Aligned_cols=69 Identities=14% Similarity=0.162 Sum_probs=41.9
Q ss_pred hcCcceEEEEcCCCCCC---ChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHH--HHHHHhcCCcEEEEecCcc
Q 027323 15 KSRFKRVCVFCGSSPGK---SPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLV--SQAVYDGGRHVLGVIPKTL 85 (225)
Q Consensus 15 ~~~~~~I~VfggS~~~~---~~~~~~~A~~lG~~LA~~g~~lVtGGG~~GlM~a~--a~gA~~~GG~viGi~P~~~ 85 (225)
.....-|.|.|+++... .++..+..+.+.+. +.....|+.|.|. ..-+++ ++-|.+.|..-+-++|..+
T Consensus 39 ~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~-~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~~pP~y 112 (303)
T PRK03620 39 PYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVET-TAGRVPVIAGAGG-GTAQAIEYAQAAERAGADGILLLPPYL 112 (303)
T ss_pred HcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHH-hCCCCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 34555677777666543 34444444444443 3445778888875 776666 4556677888777777654
No 339
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=20.72 E-value=2.5e+02 Score=23.95 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=18.2
Q ss_pred EcCCCCCCChHHHHHHHHHHHHHHHCC--CeEEEcCC
Q 027323 24 FCGSSPGKSPSYQLAAIQLGKQLVERN--IDLVYGGG 58 (225)
Q Consensus 24 fggS~~~~~~~~~~~A~~lG~~LA~~g--~~lVtGGG 58 (225)
||||...+.+...+.++.+..+ .+.| ..||.||+
T Consensus 6 ~GGs~l~~~~~~~~~~~~i~~l-~~~g~~~vvV~sg~ 41 (239)
T cd04261 6 FGGTSVASIERIKRVAERIKKR-KKKGNQVVVVVSAM 41 (239)
T ss_pred ECCcccCCHHHHHHHHHHHHHH-HHcCCCEEEEECCC
Confidence 7777664434444445554443 3344 45667764
No 340
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=20.65 E-value=4.9e+02 Score=24.79 Aligned_cols=81 Identities=17% Similarity=0.247 Sum_probs=48.6
Q ss_pred EEecCCHHH-HHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCccc
Q 027323 98 VKAVSGMHQ-RKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAA 176 (225)
Q Consensus 98 ~i~~~~m~~-Rk~~mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~ 176 (225)
++..+++.. +..-+...||+++-..=|-|-..=+.++. .|++||+-++.. + .+ .-++.+
T Consensus 330 vvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~------~~G~pI~afd~t-~-~~----------~~~i~~-- 389 (438)
T TIGR02919 330 VKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAF------EYNLLILGFEET-A-HN----------RDFIAS-- 389 (438)
T ss_pred cEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHH------HcCCcEEEEecc-c-CC----------cccccC--
Confidence 444455433 66677788888777654444444444444 378999988754 1 11 112222
Q ss_pred ccceEEcCCHHHHHHHHHhhcCC
Q 027323 177 RYIIVSAQTAHELICKLEEYVPK 199 (225)
Q Consensus 177 ~~~i~~~~d~ee~~~~l~~~~~~ 199 (225)
..++-.++++++++.|.+.+..
T Consensus 390 -g~l~~~~~~~~m~~~i~~lL~d 411 (438)
T TIGR02919 390 -ENIFEHNEVDQLISKLKDLLND 411 (438)
T ss_pred -CceecCCCHHHHHHHHHHHhcC
Confidence 4567788899998888876543
No 341
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=20.64 E-value=1.6e+02 Score=25.40 Aligned_cols=83 Identities=22% Similarity=0.304 Sum_probs=40.2
Q ss_pred CCeEEEcCCCcchHHHHHHHHHhcCCc-EEEEecCccccCCCCC-CCCceEEecCCHHHHHHHHH--HhcCeEEEecCCC
Q 027323 50 NIDLVYGGGSIGLMGLVSQAVYDGGRH-VLGVIPKTLMPREITG-DTVGEVKAVSGMHQRKAEMA--RQADAFIALPGGY 125 (225)
Q Consensus 50 g~~lVtGGG~~GlM~a~a~gA~~~GG~-viGi~P~~~~~~e~~~-~~~~~~i~~~~m~~Rk~~mv--~~sDa~IvlpGG~ 125 (225)
...+|+|+|..|++ ++.-|+..|.. ++.+-.... ..+... -..+.++......+....+. ...|.+|=..|+.
T Consensus 122 ~~VlV~G~G~vG~~--~~~~ak~~G~~~Vi~~~~~~~-r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~ 198 (280)
T TIGR03366 122 RRVLVVGAGMLGLT--AAAAAAAAGAARVVAADPSPD-RRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGAT 198 (280)
T ss_pred CEEEEECCCHHHHH--HHHHHHHcCCCEEEEECCCHH-HHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCCh
Confidence 46788888766655 34556677876 666622111 111100 01122222222211111111 1358887777777
Q ss_pred CcHHHHHHHH
Q 027323 126 GTLEELLEVI 135 (225)
Q Consensus 126 GTL~El~~~~ 135 (225)
.++++....+
T Consensus 199 ~~~~~~~~~l 208 (280)
T TIGR03366 199 AAVRACLESL 208 (280)
T ss_pred HHHHHHHHHh
Confidence 7777776554
No 342
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=20.60 E-value=6.9e+02 Score=23.19 Aligned_cols=82 Identities=22% Similarity=0.351 Sum_probs=50.8
Q ss_pred ChHHHHHHHHHHHHHHH--CCCe--EE---EcCCC-cchHHHHHHHHHhcCCcEEEEe--cCccccCCCCCCCCceEEec
Q 027323 32 SPSYQLAAIQLGKQLVE--RNID--LV---YGGGS-IGLMGLVSQAVYDGGRHVLGVI--PKTLMPREITGDTVGEVKAV 101 (225)
Q Consensus 32 ~~~~~~~A~~lG~~LA~--~g~~--lV---tGGG~-~GlM~a~a~gA~~~GG~viGi~--P~~~~~~e~~~~~~~~~i~~ 101 (225)
++...+.|++--+.+.+ .|.. .| .|||. .|.---+++.|.+.|-.|++|. |-.+ |. . ...
T Consensus 75 P~vG~~aAee~~~~I~~~l~g~dmvfitaG~GGGTGtGaaPVvakiake~g~ltvavvt~Pf~~---EG--~-----~r~ 144 (338)
T COG0206 75 PEVGRAAAEESIEEIEEALKGADMVFVTAGMGGGTGTGAAPVVAEIAKELGALTVAVVTLPFSF---EG--S-----PRM 144 (338)
T ss_pred cHHHHHHHHHHHHHHHHHhccCCeEEEEeeecCCccccccHHHHHHHHhcCCcEEEEEEecchh---cC--c-----hHH
Confidence 34556666666666655 3544 33 24443 3566678999999999999984 3221 10 0 111
Q ss_pred CCHHHHHHHHHHhcCeEEEecC
Q 027323 102 SGMHQRKAEMARQADAFIALPG 123 (225)
Q Consensus 102 ~~m~~Rk~~mv~~sDa~IvlpG 123 (225)
..-......|.+.+|-+|++|-
T Consensus 145 ~~A~~gi~~L~~~~DtlIvi~N 166 (338)
T COG0206 145 ENAEEGIEELREVVDTLIVIPN 166 (338)
T ss_pred HHHHHHHHHHHHhCCcEEEEec
Confidence 2225677788899999999985
No 343
>PRK04155 chaperone protein HchA; Provisional
Probab=20.59 E-value=97 Score=27.90 Aligned_cols=34 Identities=32% Similarity=0.275 Sum_probs=20.9
Q ss_pred eEEEecCCCCcHHHHHHHHHHHHh----CCCCCceEEE
Q 027323 117 AFIALPGGYGTLEELLEVITWAQL----GIHDKPVGLL 150 (225)
Q Consensus 117 a~IvlpGG~GTL~El~~~~~~~ql----g~~~kPiill 150 (225)
..|++|||.|.+..|.+--.+.++ ...+|||..+
T Consensus 149 DaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAI 186 (287)
T PRK04155 149 AAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITL 186 (287)
T ss_pred cEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEE
Confidence 577899999997765432222221 1357888665
No 344
>PRK08589 short chain dehydrogenase; Validated
Probab=20.58 E-value=1.4e+02 Score=25.55 Aligned_cols=53 Identities=8% Similarity=-0.019 Sum_probs=30.1
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCcEEEE
Q 027323 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (225)
Q Consensus 19 ~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi 80 (225)
+++-|.|+++. ..+.+++.|+++|+.|+.-+.. .--+...+...+.++++..+
T Consensus 7 k~vlItGas~g--------IG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~ 59 (272)
T PRK08589 7 KVAVITGASTG--------IGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAY 59 (272)
T ss_pred CEEEEECCCch--------HHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEE
Confidence 46777765542 2467888888899998866533 11122233333445565555
No 345
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=20.57 E-value=1.2e+02 Score=25.92 Aligned_cols=46 Identities=11% Similarity=0.075 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCc
Q 027323 105 HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 154 (225)
Q Consensus 105 ~~Rk~~mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g 154 (225)
.++....++.+|.+|++ ||--.+.-++.+.+...++.|++++|.+.
T Consensus 162 ~~~~~~~~~~~Dlllvi----GTSl~v~p~~~l~~~~~~~~~~i~iN~~~ 207 (225)
T cd01411 162 IEEAIQAIEKADLLVIV----GTSFVVYPFAGLIDYRQAGANLIAINKEP 207 (225)
T ss_pred HHHHHHHHhcCCEEEEE----CcCCeehhHHHHHHHHhCCCeEEEECCCC
Confidence 35566667789977773 34334433343333223578999999753
No 346
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=20.50 E-value=7.4e+02 Score=23.95 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=24.1
Q ss_pred CCCeEEEcCCCcchHHHHHHHHHhc-----C-CcEEEEe
Q 027323 49 RNIDLVYGGGSIGLMGLVSQAVYDG-----G-RHVLGVI 81 (225)
Q Consensus 49 ~g~~lVtGGG~~GlM~a~a~gA~~~-----G-G~viGi~ 81 (225)
-...|||+||+.-.|-++.+++... + .+++||.
T Consensus 88 ~~iaIvT~GG~~PGlN~vIr~iv~~~~~~~~v~~V~Gi~ 126 (459)
T PTZ00286 88 VKAGIVTCGGLCPGLNVVIRELVMNLINNYGVKTIYGAK 126 (459)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 4678899999988888777765542 3 3788884
No 347
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=20.49 E-value=5.8e+02 Score=22.31 Aligned_cols=63 Identities=24% Similarity=0.252 Sum_probs=39.4
Q ss_pred HHHHHHHHh--cCeEEE-ecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCcccccceEE
Q 027323 106 QRKAEMARQ--ADAFIA-LPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVS 182 (225)
Q Consensus 106 ~Rk~~mv~~--sDa~Iv-lpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~ 182 (225)
+-+..|++. +|++|. =.|+.|+.+-+.-+.. .+.||+++..- .......+
T Consensus 184 e~n~al~~~~~i~~lVtK~SG~~g~~eKi~AA~~------lgi~vivI~RP---------------------~~~~~~~~ 236 (249)
T PF02571_consen 184 ELNRALFRQYGIDVLVTKESGGSGFDEKIEAARE------LGIPVIVIKRP---------------------PEPYGDPV 236 (249)
T ss_pred HHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHH------cCCeEEEEeCC---------------------CCCCCCcc
Confidence 445555554 455555 3688888777766653 36899988532 11122344
Q ss_pred cCCHHHHHHHHHh
Q 027323 183 AQTAHELICKLEE 195 (225)
Q Consensus 183 ~~d~ee~~~~l~~ 195 (225)
++|++|+++++++
T Consensus 237 ~~~~~e~l~~l~~ 249 (249)
T PF02571_consen 237 VETIEELLDWLEQ 249 (249)
T ss_pred cCCHHHHHHHHhC
Confidence 7899999998863
No 348
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=20.46 E-value=1.7e+02 Score=26.88 Aligned_cols=41 Identities=12% Similarity=0.226 Sum_probs=31.1
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 027323 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGS 59 (225)
Q Consensus 19 ~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGGG~ 59 (225)
+.|.++|.++....--+..+...|++.|.+.|+.+++=+.+
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~ 41 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQ 41 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEeccc
Confidence 46788887776655445556789999999999998876654
No 349
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=20.44 E-value=1.9e+02 Score=24.17 Aligned_cols=32 Identities=3% Similarity=-0.062 Sum_probs=16.7
Q ss_pred EEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 027323 21 VCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (225)
Q Consensus 21 I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lV 54 (225)
|+|+..+- .++-+.+....+-+.+.+.|+.++
T Consensus 2 igvi~~~~--~~~~~~~~~~gi~~~~~~~g~~~~ 33 (275)
T cd06320 2 YGVVLKTL--SNEFWRSLKEGYENEAKKLGVSVD 33 (275)
T ss_pred eeEEEecC--CCHHHHHHHHHHHHHHHHhCCeEE
Confidence 66665332 245454444555555555666654
No 350
>COG1402 Uncharacterized protein, putative amidase [General function prediction only]
Probab=20.41 E-value=1.9e+02 Score=25.57 Aligned_cols=45 Identities=16% Similarity=0.252 Sum_probs=35.3
Q ss_pred CChHHHHHHHHHHHHHHHCCC---eEEEc-CCCcchHHHHHHHHHhcCC
Q 027323 31 KSPSYQLAAIQLGKQLVERNI---DLVYG-GGSIGLMGLVSQAVYDGGR 75 (225)
Q Consensus 31 ~~~~~~~~A~~lG~~LA~~g~---~lVtG-GG~~GlM~a~a~gA~~~GG 75 (225)
..+.+.+.-.++++.|++.|+ .+|.| ||+.-+|+.+++......+
T Consensus 84 ~~~t~~~~~~~~~~Sl~~~Gfrk~v~vNgHGGN~~~l~~v~~el~~~~~ 132 (250)
T COG1402 84 SPETLIALLVELVESLARHGFRKFVIVNGHGGNSAALEIVARELRAELG 132 (250)
T ss_pred cHHHHHHHHHHHHHHHHhcCccEEEEEecCCCcHHHHHHHHHHHHHhcc
Confidence 356777888899999999888 34444 5677899999999887766
No 351
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=20.27 E-value=2.1e+02 Score=26.46 Aligned_cols=89 Identities=20% Similarity=0.191 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCcEEEEecCccccCCCCCCC-CceEEecC--CHHHHHHHH
Q 027323 35 YQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDT-VGEVKAVS--GMHQRKAEM 111 (225)
Q Consensus 35 ~~~~A~~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~-~~~~i~~~--~m~~Rk~~m 111 (225)
..+..+.+++..-...+.||.|+|..| ..+++.-.+.|-.++.|-.+...-.+..... -..++..+ +...-++.-
T Consensus 217 l~~~~~~~~~~~~~~~~iiIiG~G~~g--~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~ 294 (453)
T PRK09496 217 IRAVMSEFGRLEKPVKRVMIVGGGNIG--YYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEG 294 (453)
T ss_pred HHHHHHHhCccCCCCCEEEEECCCHHH--HHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcC
Confidence 333444444433235788899997644 4466655556777777732211000000000 01223222 333444445
Q ss_pred HHhcCeEEEecCCC
Q 027323 112 ARQADAFIALPGGY 125 (225)
Q Consensus 112 v~~sDa~IvlpGG~ 125 (225)
+..+|++|++.+.-
T Consensus 295 ~~~a~~vi~~~~~~ 308 (453)
T PRK09496 295 IDEADAFIALTNDD 308 (453)
T ss_pred CccCCEEEECCCCc
Confidence 67889999887764
No 352
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=20.24 E-value=2.1e+02 Score=24.55 Aligned_cols=40 Identities=20% Similarity=0.387 Sum_probs=23.0
Q ss_pred HhcCeEEE--e-cCCCCcHHHHHHHHHHHHhCCCCCceEEEecC
Q 027323 113 RQADAFIA--L-PGGYGTLEELLEVITWAQLGIHDKPVGLLNVD 153 (225)
Q Consensus 113 ~~sDa~Iv--l-pGG~GTL~El~~~~~~~qlg~~~kPiill~~~ 153 (225)
..+|.+|= | -|-.|.+.|-+..+ ..+++...+||+-++.-
T Consensus 118 ~~~dvIVDalfG~G~~g~lrep~a~~-Ie~iN~~~~pivAVDiP 160 (203)
T COG0062 118 ESADVIVDALFGTGLSGPLREPFASL-IEAINASGKPIVAVDIP 160 (203)
T ss_pred ccCCEEEEeceecCCCCCCccHHHHH-HHHHHhcCCceEEEeCC
Confidence 45565542 2 35567666664332 23445678999988753
No 353
>PRK07775 short chain dehydrogenase; Provisional
Probab=20.18 E-value=5.4e+02 Score=21.82 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=23.4
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC
Q 027323 17 RFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGG 58 (225)
Q Consensus 17 ~~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGGG 58 (225)
..++|.|.|+++. ....+.+.|+++|+.|+....
T Consensus 9 ~~~~vlVtGa~g~--------iG~~la~~L~~~G~~V~~~~r 42 (274)
T PRK07775 9 DRRPALVAGASSG--------IGAATAIELAAAGFPVALGAR 42 (274)
T ss_pred CCCEEEEECCCch--------HHHHHHHHHHHCCCEEEEEeC
Confidence 3457888876542 246788888899998865443
No 354
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=20.13 E-value=1.4e+02 Score=27.72 Aligned_cols=34 Identities=29% Similarity=0.372 Sum_probs=26.0
Q ss_pred cCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEe
Q 027323 115 ADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN 151 (225)
Q Consensus 115 sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~ 151 (225)
.|+|||.. |.-||+|....+.+.. . .+|||||.+
T Consensus 106 ~~GiVVtH-GTDTme~tA~~Lsl~l-~-~~kPVVlTG 139 (349)
T TIGR00520 106 YDGIVITH-GTDTLEETAYFLDLTV-K-SDKPVVIVG 139 (349)
T ss_pred CCEEEEeC-CcccHHHHHHHHHHHc-C-CCCCEEEEC
Confidence 47777776 4799999998887643 2 489999985
Done!