Citrus Sinensis ID: 027324


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
MRFFSSSSSFSLTKEQNSRGSNHALLYLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPGFIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLGSFCNCLLPESIQITAVAHLPDRPTYSDDDILESPASSITAESEEEEAAVHHLLTAPNSDGAFLKEKPVRRTKEAM
cccccccccccccHHccccccccccEEEEEEEccHHHHHHHHHcccccEEEEEEccEEEEEcccccccccEEEEcccccccccEEEEEEcccccccHHHHHHHHHHHccccccccccHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHcccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccc
ccccccccccccccccccccccccEEEEEEEEcccHHHHHHHcccEEEEccEEEEcEEEEEccccccccEEEEEcccccccEEEEEEEEEccccccHHHHHHHHHHHHHHcccccHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHcccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccHHHHHc
mrffsssssfsltkeqnsrgsnhaLLYLNVydltplnnyLYWFGLGifhsgieahgleygfgaheyrtsgvfevepkscpgfifrRSVLLGTTNLSRAEFRSFMEHlsgkyhgdtYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLGSfcncllpesIQITAVahlpdrptysdddilespassitaeSEEEEAAVHHLltapnsdgaflkekpvrrtkeam
mrffsssssfsltkeqnsrgsnHALLYLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPGFIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLGSFCNCLLPESIQITAVAHLPDRPTYSDDDILESPASSITAESEEEEAAVHHlltapnsdgaflkekpvrrtkeam
MRffsssssfsLTKEQNSRGSNHALLYLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPGFIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLGSFCNCLLPESIQITAVAHLPDRPTYSDDDILespassitaeseeeeaaVHHLLTAPNSDGAFLKEKPVRRTKEAM
**********************HALLYLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPGFIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLGSFCNCLLPESIQITAVAHLP*******************************************************
**************************YLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPGFIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLGSFCNCLLPESI*********************************************************RR*****
******************RGSNHALLYLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPGFIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLGSFCNCLLPESIQITAVAHLPDRPTYSDDDILESPA*************VHHLLTAPNSDGAFLKEKP********
*********************NHALLYLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPGFIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLGSFCNCLLPESIQIT***************************************TAPNSDGAFLKEKPVRRT***M
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRFFSSSSSFSLTKEQNSRGSNHALLYLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPGFIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLGSFCNCLLPESIQITAVAHLPDRPTYSDDDILESPASSITAESEEEEAAVHHLLTAPNSDGAFLKEKPVRRTKEAM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query225 2.2.26 [Sep-21-2011]
Q93VG8224 DeSI-like protein At4g174 no no 0.871 0.875 0.695 4e-82
Q9D291194 Desumoylating isopeptidas yes no 0.617 0.716 0.408 4e-26
Q5R456194 Desumoylating isopeptidas yes no 0.617 0.716 0.408 4e-26
Q9BSY9194 Desumoylating isopeptidas yes no 0.617 0.716 0.408 4e-26
A3QRX8194 Desumoylating isopeptidas yes no 0.617 0.716 0.408 5e-26
Q5XIT6194 Desumoylating isopeptidas yes no 0.617 0.716 0.408 6e-26
Q5ZIV7193 Desumoylating isopeptidas no no 0.6 0.699 0.408 9e-26
Q5PQ09192 Desumoylating isopeptidas N/A no 0.595 0.697 0.397 4e-25
Q6DC39196 Desumoylating isopeptidas no no 0.595 0.683 0.382 1e-24
Q8X1T0201 DeSI-like protein hag1 OS yes no 0.586 0.656 0.382 5e-21
>sp|Q93VG8|PPDEX_ARATH DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1 Back     alignment and function desciption
 Score =  303 bits (777), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 139/200 (69%), Positives = 171/200 (85%), Gaps = 4/200 (2%)

Query: 26  LYLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPGFIFR 85
           +YLNVYDLTP+NNYLYWFG+GIFHSGIEAH LEY +GAHEY TSGV+EVEP++CPGFIFR
Sbjct: 28  VYLNVYDLTPVNNYLYWFGIGIFHSGIEAHNLEYCYGAHEYPTSGVYEVEPRNCPGFIFR 87

Query: 86  RSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNR 145
           RSVLLGTT++SR++FRS+ME LS KYHGDTYHLIAKNCNHFTEEVC+QLTGK IPGW+NR
Sbjct: 88  RSVLLGTTSMSRSDFRSYMEKLSRKYHGDTYHLIAKNCNHFTEEVCLQLTGKPIPGWINR 147

Query: 146 MARLGSFCNCLLPESIQITAVAHLPDRPTYSDDDILESPASSITAESEEEEAAVHHLLTA 205
           +AR+GSFCNCLLPESIQ+TAV+ LP+R  +SD+D   S ASS++    +EE +  HL+  
Sbjct: 148 LARVGSFCNCLLPESIQLTAVSALPERLEFSDEDESNSEASSVS----DEEGSEQHLINV 203

Query: 206 PNSDGAFLKEKPVRRTKEAM 225
            + +  +L+ KPVR T+E +
Sbjct: 204 ADREIVYLQNKPVRLTREEI 223





Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: -EC: .EC: -
>sp|Q9D291|DESI2_MOUSE Desumoylating isopeptidase 2 OS=Mus musculus GN=Desi2 PE=2 SV=1 Back     alignment and function description
>sp|Q5R456|DESI2_PONAB Desumoylating isopeptidase 2 OS=Pongo abelii GN=DESI2 PE=2 SV=1 Back     alignment and function description
>sp|Q9BSY9|DESI2_HUMAN Desumoylating isopeptidase 2 OS=Homo sapiens GN=DESI2 PE=1 SV=1 Back     alignment and function description
>sp|A3QRX8|DESI2_PIG Desumoylating isopeptidase 2 OS=Sus scrofa GN=DESI2 PE=2 SV=1 Back     alignment and function description
>sp|Q5XIT6|DESI2_RAT Desumoylating isopeptidase 2 OS=Rattus norvegicus GN=Desi2 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZIV7|DESI2_CHICK Desumoylating isopeptidase 2 OS=Gallus gallus GN=DESI2 PE=2 SV=1 Back     alignment and function description
>sp|Q5PQ09|DESI2_XENLA Desumoylating isopeptidase 2 OS=Xenopus laevis GN=desi2 PE=2 SV=1 Back     alignment and function description
>sp|Q6DC39|DESI2_DANRE Desumoylating isopeptidase 2 OS=Danio rerio GN=desi2 PE=2 SV=1 Back     alignment and function description
>sp|Q8X1T0|HAG1_SCHPO DeSI-like protein hag1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hag1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query225
224138684227 predicted protein [Populus trichocarpa] 0.937 0.929 0.784 1e-94
255581319225 conserved hypothetical protein [Ricinus 0.924 0.924 0.773 3e-93
449469361226 PREDICTED: deSI-like protein At4g17486-l 0.991 0.986 0.763 1e-92
359806242224 uncharacterized protein LOC100797619 [Gl 0.995 1.0 0.671 3e-83
89257462243 hypothetical protein 25.t00041 [Brassica 0.991 0.917 0.655 5e-82
358249040224 uncharacterized protein LOC100809235 [Gl 0.995 1.0 0.666 1e-81
15238059245 PPPDE putative thiol peptidase family pr 0.933 0.857 0.680 9e-81
297794485245 hypothetical protein ARALYDRAFT_494250 [ 0.884 0.812 0.701 1e-80
30684058224 PPPDE putative thiol peptidase-like prot 0.871 0.875 0.695 2e-80
357482129288 hypothetical protein MTR_5g013040 [Medic 0.995 0.777 0.657 7e-80
>gi|224138684|ref|XP_002326664.1| predicted protein [Populus trichocarpa] gi|222833986|gb|EEE72463.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  351 bits (901), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 167/213 (78%), Positives = 188/213 (88%), Gaps = 2/213 (0%)

Query: 14  KEQNSRGSNHALLYLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFE 73
           KEQ++ GS+  +LYLN+YDLTP+NNYLYWFGLGIFHSGIE HG+EYGFGAHEY TSGVFE
Sbjct: 16  KEQSNGGSSRVMLYLNIYDLTPINNYLYWFGLGIFHSGIEVHGMEYGFGAHEYPTSGVFE 75

Query: 74  VEPKSCPGFIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQ 133
           VEP+SCPGFIFRRSVLLG+TN+SR+EFRSF+EHLS KYHGD YHLIAKNCNHFT+EVC +
Sbjct: 76  VEPRSCPGFIFRRSVLLGSTNMSRSEFRSFIEHLSAKYHGDNYHLIAKNCNHFTDEVCKR 135

Query: 134 LTGKCIPGWVNRMARLGSFCNCLLPESIQITAVAHLPDRPTYSDDDI-LESPASSITAES 192
           LTGK IPGWVNRMARLGSFCNCLLPESIQITAV HLPD PT+SDDD  LES  SS T+ S
Sbjct: 136 LTGKPIPGWVNRMARLGSFCNCLLPESIQITAVRHLPDHPTFSDDDDGLESVGSSTTSRS 195

Query: 193 EEEEAAVHHLLTAPNSDGAFLKEKPVRRTKEAM 225
            EEE + HHLLT+PN + AFLKEKPVR  +E +
Sbjct: 196 -EEEGSNHHLLTSPNGEVAFLKEKPVRLARELL 227




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581319|ref|XP_002531470.1| conserved hypothetical protein [Ricinus communis] gi|223528924|gb|EEF30920.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449469361|ref|XP_004152389.1| PREDICTED: deSI-like protein At4g17486-like [Cucumis sativus] gi|449488646|ref|XP_004158127.1| PREDICTED: deSI-like protein At4g17486-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359806242|ref|NP_001241211.1| uncharacterized protein LOC100797619 [Glycine max] gi|255639835|gb|ACU20210.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|89257462|gb|ABD64953.1| hypothetical protein 25.t00041 [Brassica oleracea] Back     alignment and taxonomy information
>gi|358249040|ref|NP_001239727.1| uncharacterized protein LOC100809235 [Glycine max] gi|255637029|gb|ACU18847.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|15238059|ref|NP_199542.1| PPPDE putative thiol peptidase family protein [Arabidopsis thaliana] gi|8809614|dbj|BAA97165.1| unnamed protein product [Arabidopsis thaliana] gi|29029104|gb|AAO64931.1| At5g47310 [Arabidopsis thaliana] gi|110743140|dbj|BAE99462.1| hypothetical protein [Arabidopsis thaliana] gi|332008114|gb|AED95497.1| PPPDE putative thiol peptidase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297794485|ref|XP_002865127.1| hypothetical protein ARALYDRAFT_494250 [Arabidopsis lyrata subsp. lyrata] gi|297310962|gb|EFH41386.1| hypothetical protein ARALYDRAFT_494250 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30684058|ref|NP_567528.2| PPPDE putative thiol peptidase-like protein [Arabidopsis thaliana] gi|57012715|sp|Q93VG8.1|PPDEX_ARATH RecName: Full=DeSI-like protein At4g17486 gi|14194147|gb|AAK56268.1|AF367279_1 AT4g17486/AT4g17486 [Arabidopsis thaliana] gi|15777887|gb|AAL05904.1| AT4g17486/AT4g17486 [Arabidopsis thaliana] gi|332658500|gb|AEE83900.1| PPPDE putative thiol peptidase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357482129|ref|XP_003611350.1| hypothetical protein MTR_5g013040 [Medicago truncatula] gi|355512685|gb|AES94308.1| hypothetical protein MTR_5g013040 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query225
TAIR|locus:2171524245 AT5G47310 "AT5G47310" [Arabido 0.933 0.857 0.676 2.7e-77
TAIR|locus:2129096224 AT4G17486 "AT4G17486" [Arabido 0.92 0.924 0.635 3.6e-73
TAIR|locus:2202452279 AT1G47740 "AT1G47740" [Arabido 0.697 0.562 0.624 2.8e-57
TAIR|locus:2146970218 AT5G25170 "AT5G25170" [Arabido 0.626 0.646 0.624 5.1e-51
TAIR|locus:2116667 680 AT4G31980 "AT4G31980" [Arabido 0.671 0.222 0.582 6.7e-49
TAIR|locus:2040204240 AT2G25190 "AT2G25190" [Arabido 0.635 0.595 0.601 2.9e-48
TAIR|locus:2025752227 AT1G80690 "AT1G80690" [Arabido 0.617 0.612 0.589 6e-48
UNIPROTKB|Q9BSY9194 DESI2 "Desumoylating isopeptid 0.617 0.716 0.414 1.2e-26
UNIPROTKB|A3QRX8194 DESI2 "Desumoylating isopeptid 0.617 0.716 0.414 1.2e-26
MGI|MGI:1926075194 Desi2 "desumoylating isopeptid 0.617 0.716 0.414 1.2e-26
TAIR|locus:2171524 AT5G47310 "AT5G47310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
 Identities = 144/213 (67%), Positives = 171/213 (80%)

Query:    14 KEQNSRGSNHALLYLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFE 73
             +E N  GS   + YLNVYDLTP+NNYLYWFGLGIFHSGIEAHG EYG+GAHEY +SGVFE
Sbjct:    19 EEINGEGSLTPV-YLNVYDLTPVNNYLYWFGLGIFHSGIEAHGFEYGYGAHEYSSSGVFE 77

Query:    74 VEPKSCPGFIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQ 133
             VEP+SCPGFIFRRSVLLGTT++SR++FRSFME LS KYHGDTYHLIAKNCNHFTEEVC+Q
Sbjct:    78 VEPRSCPGFIFRRSVLLGTTSMSRSDFRSFMEKLSRKYHGDTYHLIAKNCNHFTEEVCLQ 137

Query:   134 LTGKCIPGWVNRMARLGSFCNCLLPESIQITAVAHLPDRPTYSDD-DILXXXXXXXXXXX 192
             +TGK IPGW+NRMAR+GSFCNC+LPESIQ+++V H P+   +SDD D             
Sbjct:   138 VTGKPIPGWINRMARVGSFCNCILPESIQLSSVNH-PEALEFSDDNDGSEESVASSVSYE 196

Query:   193 XXXXXXVHHLLTAPNSDGAFLKEKPVRRTKEAM 225
                    HHL+TAPNSD A+L+++PVR  +E +
Sbjct:   197 TDGEGSDHHLITAPNSDIAYLQDRPVRLARELL 229




GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2129096 AT4G17486 "AT4G17486" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202452 AT1G47740 "AT1G47740" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2146970 AT5G25170 "AT5G25170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116667 AT4G31980 "AT4G31980" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040204 AT2G25190 "AT2G25190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025752 AT1G80690 "AT1G80690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BSY9 DESI2 "Desumoylating isopeptidase 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A3QRX8 DESI2 "Desumoylating isopeptidase 2" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1926075 Desi2 "desumoylating isopeptidase 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query225
pfam05903151 pfam05903, DUF862, PPPDE putative peptidase domain 6e-58
>gnl|CDD|218802 pfam05903, DUF862, PPPDE putative peptidase domain Back     alignment and domain information
 Score =  179 bits (457), Expect = 6e-58
 Identities = 74/147 (50%), Positives = 92/147 (62%), Gaps = 13/147 (8%)

Query: 26  LYLNVYDLTPLNN------YLYWFGL---GIFHSGIEAHGLEYGFGAHEYRTSGVFEVEP 76
           + LNVYDL+P+N            G    GIFH+G+E +G+EY FGAH Y  SG+FE  P
Sbjct: 3   VKLNVYDLSPINGGLARRYSPLLLGKQIEGIFHTGVEVYGVEYFFGAHTYEGSGIFECPP 62

Query: 77  KS-CPGFIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLT 135
              CPGF  R S+ LG T L+  EFR  +  LS +Y GDTY+LI+KNCNHFT+E+C  LT
Sbjct: 63  GRTCPGFTPRESIELGETELTEEEFREILNSLSEEYTGDTYNLISKNCNHFTDELCQFLT 122

Query: 136 GKCIPGWVNRMARLG---SFCNCLLPE 159
           GK IP W+NR+ R      F  CLLP 
Sbjct: 123 GKKIPSWINRLPREVLSTPFGQCLLPM 149


The PPPDE superfamily (after Permuted Papain fold Peptidases of DsRNA viruses and Eukaryotes), consists of predicted thiol peptidases with a circularly permuted papain-like fold. The inference of the likely DUB function of the PPPDE superfamily proteins is based on the fusions of the catalytic domain to Ub-binding PUG (PUB)/UBA domains and a novel alpha-helical Ub-associated domain (the PUL domain, after PLAP, Ufd3p and Lub1p). Length = 151

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 225
KOG0324214 consensus Uncharacterized conserved protein [Funct 100.0
PF05903151 Peptidase_C97: PPPDE putative peptidase domain; In 100.0
PF04970125 LRAT: Lecithin retinol acyltransferase; InterPro: 94.04
PF05608136 DUF778: Protein of unknown function (DUF778); Inte 91.42
>KOG0324 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
Probab=100.00  E-value=1.7e-59  Score=406.85  Aligned_cols=199  Identities=49%  Similarity=0.931  Sum_probs=180.7

Q ss_pred             CcceEEEEEeeCCCcchhhhhcccceeeeeeEEeCeEEeecccccCCCCeEeeCCCCCCCCceEEEEEeccccCCHHHHH
Q 027324           22 NHALLYLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPGFIFRRSVLLGTTNLSRAEFR  101 (225)
Q Consensus        22 ~~~~V~LnVYDLs~~n~~l~~lG~GI~HTGVeV~G~EY~FG~h~~~~sGI~~~~P~~~pg~~~r~sI~LG~T~ls~~e~~  101 (225)
                      ...+|+|||||+++.|.|++|+|+|||||||||||+||+||+|+++.+|||+++|++||+++||++|.||.|++++.+|+
T Consensus        12 ~~~~v~lnvyd~~~~n~y~~~lGlGIfHSgIeV~g~EyayG~h~~~~sGIfe~~P~~~~~f~fr~sI~lG~Td~~~~~v~   91 (214)
T KOG0324|consen   12 GRVPVYLNVYDLTPINKYLYWLGLGIFHSGIEVHGVEYAYGAHEYPSSGIFEVEPGNCPEFTFRKSILLGSTDLTEDDVR   91 (214)
T ss_pred             cceeeeeeeecceehhhhhhhhcceeEeeeEEEeceeeeccccccCCCCeEeeCCCCCCCCceeEEEEecCCCCCHHHHH
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCCCCCcccccccccchHHHHHHHHhcCCCCChHHHHhhhhc--cccccccCCcceecccccCCCCCCccCCC
Q 027324          102 SFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLG--SFCNCLLPESIQITAVAHLPDRPTYSDDD  179 (225)
Q Consensus       102 ~~l~~L~~~f~g~tYhLL~rNCNHFSd~lc~~L~Gk~IP~wInrlA~iG--s~~~cllP~~~~~~~v~~~~~~~~~~~~~  179 (225)
                      +||++|+++|+|++||||.|||||||+++|++|+||+||+||||||++|  .+|+|++|.....+++.+.+.-....+++
T Consensus        92 ~~le~L~~ey~G~~YhL~~kNCNHFsn~la~~Ltgk~IP~winrLa~~~~~~~~~~~~p~~~~~t~~~~~~~~~~~~~~~  171 (214)
T KOG0324|consen   92 RILEELSEEYRGNSYHLLTKNCNHFSNELALQLTGKKIPSWVNRLARAGLCSLCNCLLPMLQNLTPVVLASSVVERFDEE  171 (214)
T ss_pred             HHHHHHHhhcCCceehhhhhccchhHHHHHHHHcCCCccHHHHHHHHHhhhhHHhhcchhhhcCCccccccccccccCcc
Confidence            9999999999999999999999999999999999999999999999999  88999999999999999888877766666


Q ss_pred             CCCCCCCCCCccchhhhhhhcccccCCCCCceeccccCccccccc
Q 027324          180 ILESPASSITAESEEEEAAVHHLLTAPNSDGAFLKEKPVRRTKEA  224 (225)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  224 (225)
                      +.+.. ...+..+   +....+|+++++..+..++..+.+++|..
T Consensus       172 ~~~~~-~~~s~~s---~~~~~~~~s~s~~~~~~~~~~~~~~~~~~  212 (214)
T KOG0324|consen  172 ENSKK-KLASSGS---PSRSAPLLSASDSGLILLSGPSLKRERNT  212 (214)
T ss_pred             ccccc-cccccCC---CcccCCCCCcCcCccccccCccccccccc
Confidence            54222 1222233   26778999999999999998888888764



>PF05903 Peptidase_C97: PPPDE putative peptidase domain; InterPro: IPR008580 This domain consists of the N-terminal portion of several eukaryotic sequences Back     alignment and domain information
>PF04970 LRAT: Lecithin retinol acyltransferase; InterPro: IPR007053 This entry represents a conserved sequence region found in proteins from viruses, bacteria and eukaryotes Back     alignment and domain information
>PF05608 DUF778: Protein of unknown function (DUF778); InterPro: IPR008496 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query225
2wp7_A168 Crystal Structure Of Desumoylase(Duf862) Length = 1 7e-06
3ebq_A170 Crystal Structure Of Human Pppde1 Length = 170 1e-05
>pdb|2WP7|A Chain A, Crystal Structure Of Desumoylase(Duf862) Length = 168 Back     alignment and structure

Iteration: 1

Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 11/124 (8%) Query: 46 GIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPGFIFRRSVLLGTTNLSRAEFRSFME 105 GI+H+ I H E+ FG+ SG+ P V +G T ++ F ++ Sbjct: 35 GIWHTSIVVHKDEFFFGS-----SGISSCTPGGTLLGPPDSVVDVGNTEVTEEIFLEYLS 89 Query: 106 HLSGK-YHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMAR---LGSFCNCLLP--E 159 L + G+ Y+L NCN F+ EV LTG+ IP ++ + F L P + Sbjct: 90 SLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDLPSEVLSTPFGQALRPFLD 149 Query: 160 SIQI 163 SIQI Sbjct: 150 SIQI 153
>pdb|3EBQ|A Chain A, Crystal Structure Of Human Pppde1 Length = 170 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query225
2wp7_A168 PPPDE peptidase domain-containing protein 2; hydro 4e-45
>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A Length = 168 Back     alignment and structure
 Score =  147 bits (372), Expect = 4e-45
 Identities = 43/157 (27%), Positives = 63/157 (40%), Gaps = 19/157 (12%)

Query: 27  YLNVYDLTP-LNNYLYWFGLG-----IFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCP 80
            L VYDL+  L   L    LG     I+H+ I  H  E+ FG+      G+    P    
Sbjct: 10  KLYVYDLSKGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGSS-----GISSCTPGGTL 64

Query: 81  GFIFRRSVLLGTTNLSRAEFRSFMEHLSG-KYHGDTYHLIAKNCNHFTEEVCMQLTGKCI 139
                  V +G T ++   F  ++  L    + G+ Y+L   NCN F+ EV   LTG+ I
Sbjct: 65  LGPPDSVVDVGNTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKI 124

Query: 140 PGWVNRMAR------LGSFCNCLLPESIQITAVAHLP 170
           P ++  +         G      L +SIQI       
Sbjct: 125 PSYITDLPSEVLSTPFGQALRPFL-DSIQIQPPGGNS 160


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query225
2wp7_A168 PPPDE peptidase domain-containing protein 2; hydro 100.0
2lkt_A125 Retinoic acid receptor responder protein 3; TIG3, 91.55
4dot_A140 Group XVI phospholipase A2; alpha/beta fold, phosp 91.23
4dpz_X137 HRAS-like suppressor 2; alpha/beta fold, enzyme ph 89.97
>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A Back     alignment and structure
Probab=100.00  E-value=8.7e-51  Score=341.87  Aligned_cols=132  Identities=30%  Similarity=0.482  Sum_probs=123.9

Q ss_pred             cceEEEEEeeCCCcc-hhh--hhccc---ceeeeeeEEeCeEEeecccccCCCCeEeeCCCCCCCCceEEEEEeccccCC
Q 027324           23 HALLYLNVYDLTPLN-NYL--YWFGL---GIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPGFIFRRSVLLGTTNLS   96 (225)
Q Consensus        23 ~~~V~LnVYDLs~~n-~~l--~~lG~---GI~HTGVeV~G~EY~FG~h~~~~sGI~~~~P~~~pg~~~r~sI~LG~T~ls   96 (225)
                      +++|+||||||++++ +++  .|+|.   |||||||||||+||+||+     +||++++|+.+|.++||++|.||+|.++
T Consensus         6 ~~~V~LnVYDLs~g~a~~~s~~~lG~~i~Gi~HtgV~V~G~EY~FG~-----~GI~~~~Pg~~~~g~~resi~lG~T~~~   80 (168)
T 2wp7_A            6 LYPVKLYVYDLSKGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGS-----SGISSCTPGGTLLGPPDSVVDVGNTEVT   80 (168)
T ss_dssp             CEEEEEEEEETTTTHHHHHHHHHTSSCCCCCEEEEEEETTEEEEEET-----TEEEEESTTCSTTCSCSEEEEEEEECCC
T ss_pred             CcEEEEEEEECChHHHHHhhHHHhCCCcCcEEEEEEEECCEEEEEcC-----CCeEecCCCcCCCCCeEEEEECCCccCC
Confidence            489999999999974 443  48997   999999999999999996     5999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccC-CCCCcccccccccchHHHHHHHHhcCCCCChHHHHhhh------hccccccccCC
Q 027324           97 RAEFRSFMEHLSGK-YHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMAR------LGSFCNCLLPE  159 (225)
Q Consensus        97 ~~e~~~~l~~L~~~-f~g~tYhLL~rNCNHFSd~lc~~L~Gk~IP~wInrlA~------iGs~~~cllP~  159 (225)
                      +++|++||++|+++ |++++||||+|||||||+++|++|+||+||+||||||+      +|.++.|+|+.
T Consensus        81 ~~~~~~~l~~l~~~~~~g~~Y~Ll~~NCNhFs~~l~~~L~gk~IP~wInrl~~~vl~tp~G~~l~~~l~~  150 (168)
T 2wp7_A           81 EEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDLPSEVLSTPFGQALRPFLDS  150 (168)
T ss_dssp             HHHHHHHHHHHHTTTCSGGGCBTTTBSHHHHHHHHHHHHHSCCCCHHHHTHHHHHHTSHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhhccCCcccCchhhhccchhHHHHHHHhcCCCCcHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            99999999999998 99999999999999999999999999999999999999      68889999854



>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens} Back     alignment and structure
>4dot_A Group XVI phospholipase A2; alpha/beta fold, phospholipase/acyltransferase, phosphatidyl phosphatidylethanolamine, membrane, hydrolase; 1.96A {Homo sapiens} Back     alignment and structure
>4dpz_X HRAS-like suppressor 2; alpha/beta fold, enzyme phospholipid acyltransferase, hydrol transferase; 1.25A {Homo sapiens} PDB: 4fa0_A 2kyt_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00