BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027325
         (225 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3HTU|B Chain B, Crystal Structure Of The Human Vps25-Vps20 Subcomplex
 pdb|3HTU|D Chain D, Crystal Structure Of The Human Vps25-Vps20 Subcomplex
 pdb|3HTU|F Chain F, Crystal Structure Of The Human Vps25-Vps20 Subcomplex
 pdb|3HTU|H Chain H, Crystal Structure Of The Human Vps25-Vps20 Subcomplex
          Length = 39

 Score = 32.3 bits (72), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 25/35 (71%)

Query: 9  PKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEK 43
           ++T+ D+AIL LK QR KL QYQ+++   +E E+
Sbjct: 2  SRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERER 36


>pdb|3P88|A Chain A, Fxr Bound To Isoquinolinecarboxylic Acid
          Length = 229

 Score = 28.1 bits (61), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 121 VQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVP 174
           +  +MD   + +  Q+  N IL E+ SAE+  EIL E      Q+ V+   ++P
Sbjct: 10  LHFIMDSYNKQRMPQEITNKILKEEFSAEENFEILTEMATNHVQVLVEFTKKLP 63


>pdb|4DKD|A Chain A, Crystal Structure Of Human Interleukin-34 Bound To Human
           Csf-1r
 pdb|4DKD|B Chain B, Crystal Structure Of Human Interleukin-34 Bound To Human
           Csf-1r
          Length = 185

 Score = 27.3 bits (59), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 13/48 (27%), Positives = 30/48 (62%)

Query: 79  LINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMD 126
           L+NV+Q L D+E++ K ++V   L +    +K ++ +  L++  ++M+
Sbjct: 109 LLNVQQGLTDVEVSPKVESVLSLLNAPGPNLKLVRPKALLDNCFRVME 156


>pdb|4DKC|A Chain A, Crystal Structure Of Human Interleukin-34
 pdb|4DKC|B Chain B, Crystal Structure Of Human Interleukin-34
 pdb|4DKE|A Chain A, Crystal Structure Of Human Interleukin-34 Bound To Fab1.1
 pdb|4DKE|B Chain B, Crystal Structure Of Human Interleukin-34 Bound To Fab1.1
 pdb|4DKF|A Chain A, Crystal Structure Of Human Interleukin-34 Bound To Fab2
 pdb|4DKF|B Chain B, Crystal Structure Of Human Interleukin-34 Bound To Fab2
          Length = 190

 Score = 26.9 bits (58), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 13/48 (27%), Positives = 30/48 (62%)

Query: 79  LINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMD 126
           L+NV+Q L D+E++ K ++V   L +    +K ++ +  L++  ++M+
Sbjct: 109 LLNVQQGLTDVEVSPKVESVLSLLNAPGPNLKLVRPKALLDNCFRVME 156


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.308    0.127    0.329 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,074,883
Number of Sequences: 62578
Number of extensions: 173242
Number of successful extensions: 588
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 568
Number of HSP's gapped (non-prelim): 37
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 50 (23.9 bits)