BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027325
(225 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GXN6|VP201_ARATH Vacuolar protein sorting-associated protein 20 homolog 1
OS=Arabidopsis thaliana GN=VPS20.1 PE=1 SV=1
Length = 219
Score = 348 bits (894), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 181/225 (80%), Positives = 203/225 (90%), Gaps = 6/225 (2%)
Query: 1 MGNLFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALL 60
MGNLFVKKP+IT+VDRAILSLKTQRRKL QYQQ+L+ VIEAEKQAARDLIR+KRKDRALL
Sbjct: 1 MGNLFVKKPQITEVDRAILSLKTQRRKLGQYQQKLEKVIEAEKQAARDLIREKRKDRALL 60
Query: 61 ALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLED 120
AL+KKR QEELLKQVD W+INVEQQL DIEL SKQKAVFESLK G +AIKAIQSE++L+D
Sbjct: 61 ALRKKRTQEELLKQVDQWVINVEQQLTDIELTSKQKAVFESLKQGNSAIKAIQSELDLDD 120
Query: 121 VQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSE 180
VQKLMDDT +AKAYQDE+NAILGEKLSAEDEE+ILAEFDNLE+QL V EMPEVPT+ SE
Sbjct: 121 VQKLMDDTADAKAYQDELNAILGEKLSAEDEEDILAEFDNLESQLIVDEMPEVPTKE-SE 179
Query: 181 EQEKLDLPNVPTKVPVASRVVADDAEIAPAEASTKRRVMEEPLPA 225
E EKLDLP+VPTK PVAS +AEI PAE++TK +V+EEPLPA
Sbjct: 180 ESEKLDLPDVPTKTPVAS-----NAEITPAESATKTKVLEEPLPA 219
>sp|Q9FY89|VP202_ARATH Vacuolar protein sorting-associated protein 20 homolog 2
OS=Arabidopsis thaliana GN=VPS20.2 PE=1 SV=1
Length = 216
Score = 338 bits (866), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 181/226 (80%), Positives = 195/226 (86%), Gaps = 11/226 (4%)
Query: 1 MGNLFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALL 60
MGNLFVKKPKIT+VDRAILSLKTQRRKL QYQQQL+ VIEAEKQAARDLIR+KRKDRALL
Sbjct: 1 MGNLFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEKVIEAEKQAARDLIREKRKDRALL 60
Query: 61 ALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLED 120
ALKKKR QEELLKQVD WLINVEQQLADIEL SKQKAVFESLK G NAIKAIQSE+NL+D
Sbjct: 61 ALKKKRTQEELLKQVDQWLINVEQQLADIELTSKQKAVFESLKQGNNAIKAIQSEVNLDD 120
Query: 121 VQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVP-TEGPS 179
VQKLMDDT EAKAYQDE++AILGEKLSAEDEEEILAEFDNLE+ L V++MPEVP TE
Sbjct: 121 VQKLMDDTAEAKAYQDELSAILGEKLSAEDEEEILAEFDNLESLLIVEDMPEVPTTELMP 180
Query: 180 EEQEKLDLPNVPTKVPVASRVVADDAEIAPAEASTKRRVMEEPLPA 225
EE EK+DLP+VPTK PVAS STKR+V+EEPL A
Sbjct: 181 EEPEKMDLPDVPTKAPVASNET----------TSTKRKVLEEPLEA 216
>sp|Q54KZ4|CHMP6_DICDI Charged multivesicular body protein 6 OS=Dictyostelium discoideum
GN=chmp6 PE=3 SV=2
Length = 218
Score = 130 bits (328), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 126/197 (63%), Gaps = 20/197 (10%)
Query: 1 MGNLFV-------KKPKITDVDRAILSLKTQRRKLAQYQQQ-LDVVIEAEKQAARDLIRQ 52
MG LF K+ KI+ DRA+L+LK QR KL YQ Q L++ I A++ +
Sbjct: 1 MGILFSHCSGGREKEDKISKTDRAVLNLKIQRDKLKNYQTQVLEIAI------AKECSKA 54
Query: 53 KRKDRALLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAI 112
+K++ALLALKKK+ QE++L + L N+E+ +A++E A Q +FESLK G ++K I
Sbjct: 55 GKKNQALLALKKKKYQEKMLDESFANLQNIEELIANVEQAEIQVRIFESLKQGNESLKEI 114
Query: 113 QSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPE 172
Q E++LEDV+ LM++T EA YQ++I+ L K S E+E+++L E D +E QL Q+ P+
Sbjct: 115 QKEMSLEDVENLMEETAEAIQYQNDISEALSGKFSKEEEDDLLNELDEMEKQLNAQQYPK 174
Query: 173 VP-TEGPSEEQEKLDLP 188
VP T+ P K++LP
Sbjct: 175 VPETQLP-----KIELP 186
>sp|Q503V0|CHMP6_DANRE Charged multivesicular body protein 6 OS=Danio rerio GN=chmp6 PE=2
SV=3
Length = 206
Score = 123 bits (309), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 130/201 (64%), Gaps = 11/201 (5%)
Query: 1 MGNLFVKK--PKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRA 58
MGNLF KK ++T+ DRA+L LK QR KL QYQ+++ + ++ E+Q A+ L++ +KD+A
Sbjct: 1 MGNLFGKKKATRVTEQDRAVLQLKQQRDKLKQYQKRITLQMDKERQLAKQLLKDGKKDKA 60
Query: 59 LLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINL 118
LL LKKKR Q++LL++ + + N+E+ + DIE A + V E LK G + +K + +++
Sbjct: 61 LLLLKKKRYQDQLLEKTENQISNLERMVQDIEFAQIEMKVIEGLKVGNDCLKKMHEVLSI 120
Query: 119 EDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGP 178
E+V+K+MD+T +A YQ +I+ +L L+ EDEE +LAE + + A E+PEVP E
Sbjct: 121 EEVEKIMDETHDAIEYQKQIDEMLAGSLTQEDEEAVLAELEAITQGEADLELPEVPGE-- 178
Query: 179 SEEQEKLDLPNVPTKVPVASR 199
+LP VP + PV +
Sbjct: 179 -------ELPEVPEQEPVREK 192
>sp|Q96FZ7|CHMP6_HUMAN Charged multivesicular body protein 6 OS=Homo sapiens GN=CHMP6 PE=1
SV=3
Length = 201
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 120/202 (59%), Gaps = 14/202 (6%)
Query: 1 MGNLFVKK--PKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRA 58
MGNLF +K ++T+ D+AIL LK QR KL QYQ+++ +E E+ AR L+R RK+RA
Sbjct: 1 MGNLFGRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGRKERA 60
Query: 59 LLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINL 118
L LKKKR QE+LL + + + ++E + IE + V E L+ G + + +++
Sbjct: 61 KLLLKKKRYQEQLLDRTENQISSLEAMVQSIEFTQIEMKVMEGLQFGNECLNKMHQVMSI 120
Query: 119 EDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGP 178
E+V++++D+T+EA YQ +I+ +L + EDE+ IL E + + E+PEVP+E
Sbjct: 121 EEVERILDETQEAVEYQRQIDELLAGSFTQEDEDAILEELSAITQEQI--ELPEVPSE-- 176
Query: 179 SEEQEKLDLP-NVPTKVPVASR 199
LP +P VPV +R
Sbjct: 177 -------PLPEKIPENVPVKAR 191
>sp|Q5R861|CHMP6_PONAB Charged multivesicular body protein 6 OS=Pongo abelii GN=CHMP6 PE=2
SV=3
Length = 201
Score = 121 bits (304), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 120/202 (59%), Gaps = 14/202 (6%)
Query: 1 MGNLFVKK--PKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRA 58
MGNLF +K ++T+ D+AIL LK QR KL QYQ+++ +E E+ AR L+R RK+RA
Sbjct: 1 MGNLFGRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGRKERA 60
Query: 59 LLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINL 118
L LKKKR QE+LL + + + ++E + IE + V E L+ G + + +++
Sbjct: 61 KLLLKKKRYQEQLLDRTENQISSLEAMVQSIEFTQIEMKVMEGLQFGNECLNKMHQVMSI 120
Query: 119 EDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGP 178
E+V++++D+T+EA YQ +I+ +L + EDE+ IL E + + E+PEVP+E
Sbjct: 121 EEVERILDETQEAVEYQRQIDELLAGSFTQEDEDAILEELSAITQEQI--ELPEVPSE-- 176
Query: 179 SEEQEKLDLP-NVPTKVPVASR 199
LP +P VPV +R
Sbjct: 177 -------PLPEKIPEDVPVKAR 191
>sp|Q5ZL55|CHMP6_CHICK Charged multivesicular body protein 6 OS=Gallus gallus GN=CHMP6
PE=2 SV=3
Length = 200
Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 114/176 (64%), Gaps = 7/176 (3%)
Query: 1 MGNLFVKK--PKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRA 58
MGNLF +K ++T+ D+A+L LK QR KL QYQ+++ + +E E++ AR L+++ +K++A
Sbjct: 1 MGNLFGRKRRSRVTEQDKAVLQLKQQRDKLRQYQKRISLGLERERELARQLLKEGKKEKA 60
Query: 59 LLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINL 118
+L LKKKR QE+LL + D + N+E+ + DIE + V E LK G + + +++
Sbjct: 61 MLLLKKKRYQEQLLDKTDNQISNLERMVQDIEFTQIEMKVIEGLKIGNECLNKMHQVMSI 120
Query: 119 EDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVP 174
E+V++++ +T++A YQ +I+ IL L+ EDE+ IL E + + QE E+P
Sbjct: 121 EEVERIIGETQDAVEYQRQIDEILAGSLTEEDEDAILEELNAI-----TQEQLELP 171
>sp|P0C0A3|CHMP6_MOUSE Charged multivesicular body protein 6 OS=Mus musculus GN=Chmp6 PE=2
SV=2
Length = 200
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 112/178 (62%), Gaps = 4/178 (2%)
Query: 1 MGNLFVKK--PKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRA 58
MGNLF +K ++T+ DRAIL LK QR KL QYQ+++ +E E+ AR L+R RK+RA
Sbjct: 1 MGNLFGRKKQSRVTEQDRAILQLKQQRDKLRQYQKRVTQQLERERALARQLLRDGRKERA 60
Query: 59 LLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINL 118
L LKKKR +E+LL + + + ++E + IE + V E L+ G + + +++
Sbjct: 61 KLLLKKKRYREQLLDRTENQISSLEAMVQSIEFTQIEMKVMEGLQVGNECLNKMHQVMSI 120
Query: 119 EDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTE 176
E+V++++D+T+EA YQ +I+ +L + EDE+ IL E + + + E+PEVP+E
Sbjct: 121 EEVERILDETQEAVEYQRQIDELLAGNFTQEDEDAILEELNAITQEQM--ELPEVPSE 176
>sp|O94318|VPS20_SCHPO Vacuolar protein sorting-associated protein 20
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps20 PE=3 SV=1
Length = 226
Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 112/195 (57%)
Query: 4 LFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALK 63
+ V KI D DR+ILS+K QR KL +Y ++L+ + + E AR +R K AL ALK
Sbjct: 1 MGVNSSKINDKDRSILSIKEQRDKLLRYSKRLEKIEQLEIDIARKCLRDSDKRGALRALK 60
Query: 64 KKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQK 123
K+ L+ Q G L N+EQ L+ IE QK V L+ GTN I+ +Q+++ LE V +
Sbjct: 61 AKKLYSGLITQTYGQLGNIEQLLSTIEFTLIQKDVMFGLQEGTNLIRQLQADMPLERVGR 120
Query: 124 LMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSEEQE 183
+ +D +EA +Y DE+N +L ++S + E+EI E D+L + +++ ++ G +
Sbjct: 121 ICNDRDEAMSYVDEVNDMLQGRMSRDQEDEIQEELDSLIREQEDEKVKDLEKPGFTPSTG 180
Query: 184 KLDLPNVPTKVPVAS 198
LP+VP K + S
Sbjct: 181 VDVLPSVPLKNAIPS 195
>sp|Q6GMA4|CHM6A_XENLA Charged multivesicular body protein 6-A OS=Xenopus laevis
GN=chmp6-a PE=2 SV=3
Length = 200
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 100/149 (67%), Gaps = 2/149 (1%)
Query: 1 MGNLFVKK--PKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRA 58
MGNLF +K ++T+ D+A+L LK QR KL QYQ+++ + ++ E++ A+ L+ +K++A
Sbjct: 1 MGNLFARKRRSRVTEQDKAVLQLKQQRDKLKQYQKKITLQLQRERELAKQLLHDGKKEKA 60
Query: 59 LLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINL 118
L LKKKR QE+LL++ D + N+E+ + DIE A + V E LK G +K + +++
Sbjct: 61 KLLLKKKRYQEQLLEKTDNQISNLEKMVEDIEFAQIEMKVIEGLKVGNECLKKMHEVMSI 120
Query: 119 EDVQKLMDDTEEAKAYQDEINAILGEKLS 147
E+V+++MD+T+E YQ +I+ +L L+
Sbjct: 121 EEVERIMDETQEGIEYQRQIDEMLSGSLT 149
>sp|Q6NU11|CHM6B_XENLA Charged multivesicular body protein 6-B OS=Xenopus laevis
GN=chmp6-b PE=2 SV=3
Length = 200
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 100/149 (67%), Gaps = 2/149 (1%)
Query: 1 MGNLFVKK--PKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRA 58
MGNLF +K ++T+ D+A+L LK QR KL QYQ+++ + ++ E++ A+ L+ +K++A
Sbjct: 1 MGNLFARKRRSRVTEQDKAVLQLKQQRDKLKQYQKKITLQLQRERELAKQLLHDGKKEKA 60
Query: 59 LLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINL 118
L LKKKR QE+LL++ D + N+E+ + DIE A + V E LK G +K + +++
Sbjct: 61 KLLLKKKRYQEQLLEKTDNQISNLEKMVDDIEFAQIEMKVIEGLKVGNEWLKKMHEVMSI 120
Query: 119 EDVQKLMDDTEEAKAYQDEINAILGEKLS 147
E+V+K+M++T+E YQ +I+ +L L+
Sbjct: 121 EEVEKIMEETQEGIEYQRQIDEMLSGSLT 149
>sp|Q04272|VPS20_YEAST Vacuolar protein sorting-associated protein 20 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS20 PE=1
SV=3
Length = 221
Score = 83.6 bits (205), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 101/192 (52%), Gaps = 14/192 (7%)
Query: 8 KPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQ-----KRKDRALLAL 62
K IT DRAIL +K + ++ ++ ++ D +I EK +DLIR+ K + L
Sbjct: 7 KVHITKTDRAILEVKRSKDEIHKFTRRTDNLILVEKSQLKDLIRKNPENYKSNMKVRFLL 66
Query: 63 KKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQ 122
K+ QE LL+Q LIN+E ++ +E +K LK+G +K + E + +V
Sbjct: 67 KRIHYQEHLLQQASDQLINLENMVSTLEFKMVEKQFINGLKNGNEILKKLNKEFS--NVD 124
Query: 123 KLMDDTEEAKAYQDEINAILGEKL--SAEDEEEILAEFDNLEAQLAVQEMPEVPTEG-PS 179
+LMDD ++ AYQ+EIN L L ++ E+++ E D LE++L ++M PS
Sbjct: 125 ELMDDVQDQIAYQNEINETLSRSLVGTSNYEDDLDKELDALESELNPEKMNNAKVANMPS 184
Query: 180 EEQEKLDLPNVP 191
E LP++P
Sbjct: 185 TE----GLPSLP 192
>sp|Q6FW96|SNF7_CANGA Vacuolar-sorting protein SNF7 OS=Candida glabrata (strain ATCC 2001
/ CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SNF7
PE=3 SV=1
Length = 228
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 92/182 (50%), Gaps = 3/182 (1%)
Query: 16 RAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQV 75
+AI+ L+ L++ Q L I A++ AR + + K A ALKKK+ E L ++
Sbjct: 19 KAIIELREHINLLSKKQAHLQGQITAQENEARKFLTRGNKTMAKNALKKKKVYEGQLVKL 78
Query: 76 DGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQ 135
+ + ++EQQL IE A+ ++K G A+K+I S ++++ V + MD+ E
Sbjct: 79 ESQMDSLEQQLFSIESANLNLETMRAMKQGAKAMKSIHSGLDIDRVDETMDEIREQVELG 138
Query: 136 DEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPT--EGPSEEQEKLDLPNVP-T 192
+EI+ + L E E D LA + P+V T + E ++ L +PN+P T
Sbjct: 139 EEISDAISRPLYTGANEIDEDELDEELDMLAQETEPQVATKEQALPESKQALSMPNIPNT 198
Query: 193 KV 194
K+
Sbjct: 199 KI 200
>sp|P39929|SNF7_YEAST Vacuolar-sorting protein SNF7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SNF7 PE=1 SV=1
Length = 240
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 67/123 (54%)
Query: 16 RAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQV 75
+AI+ L+ L++ Q L I ++ AR + + K A ALKKK+ E+LL +V
Sbjct: 21 KAIVRLREHINLLSKKQSHLRTQITNQENEARIFLTKGNKVMAKNALKKKKTIEQLLSKV 80
Query: 76 DGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQ 135
+G + ++EQQL IE A+ +++ G A+K I S ++++ V + MD+ E
Sbjct: 81 EGTMESMEQQLFSIESANLNLETMRAMQEGAKAMKTIHSGLDIDKVDETMDEIREQVELG 140
Query: 136 DEI 138
DEI
Sbjct: 141 DEI 143
>sp|Q9SZE4|VP322_ARATH Vacuolar protein sorting-associated protein 32 homolog 2
OS=Arabidopsis thaliana GN=VPS32.2 PE=1 SV=1
Length = 219
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 41 AEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFE 100
AE + A++ R K K A+ LK+KR E ++Q+ + + + Q+ +E A +
Sbjct: 42 AEVEKAKEYSRAKNKRAAIQCLKRKRLYEGQVEQLGNFQLRIHDQMIMLEGAKATTETVD 101
Query: 101 SLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAE---DEEEILA 156
+L+SG +A+KA+Q N++DV K MD+ E +I L + A DE+E+ A
Sbjct: 102 ALRSGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALATPMGAAADFDEDELAA 160
>sp|O82197|VP321_ARATH Vacuolar protein sorting-associated protein 32 homolog 1
OS=Arabidopsis thaliana GN=VPS32.1 PE=1 SV=1
Length = 213
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 60/107 (56%), Gaps = 4/107 (3%)
Query: 41 AEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFE 100
E + A++ R K K A+ LK+KR E+ ++Q+ + + + Q+ +E A +
Sbjct: 43 GEVEKAKEFSRAKNKRAAIQCLKRKRLYEQQVEQLGNFQLRIHDQMIMLEGAKATTETVD 102
Query: 101 SLKSGTNAIKAIQSEINLEDVQKLMDD----TEEAKAYQDEINAILG 143
+L++G +A+KA+Q N++DV K MD+ TE K Q+ ++A G
Sbjct: 103 ALRTGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSAPFG 149
>sp|Q753W3|SNF7_ASHGO Vacuolar-sorting protein SNF7 OS=Ashbya gossypii (strain ATCC 10895
/ CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SNF7 PE=3
SV=1
Length = 237
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 71/124 (57%)
Query: 16 RAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQV 75
+AIL L+ + L++ Q L + +++++AR + + K+ A ALK+K+ E L ++
Sbjct: 20 KAILELREHIQLLSKKQAHLQTQMTSQEESARHFLSKGNKNMAKAALKRKKVFESQLLKI 79
Query: 76 DGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQ 135
D + ++EQQL IE A+ +++K G +A+K I +++E V + MD+ E
Sbjct: 80 DKQVDSLEQQLYSIENANLNLETMKAMKQGASAMKHIHEGLDVERVDETMDEIREQVELG 139
Query: 136 DEIN 139
+EI+
Sbjct: 140 EEIS 143
>sp|Q9P7F7|SNF7_SCHPO Vacuolar-sorting protein snf7 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=snf7 PE=3 SV=1
Length = 222
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 79/142 (55%), Gaps = 9/142 (6%)
Query: 58 ALLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEIN 117
AL ALK+K+ E L +++G N+EQQL I+ A+ ++++ G A+K+IQ ++
Sbjct: 60 ALTALKRKKMHENELVKIEGSRNNIEQQLFSIQNANLNFETLQAMRQGAEAMKSIQRGMD 119
Query: 118 LEDVQKLMDDTEEAKAYQDEINAILGE--KLSAE-DEEEILAEFDNLE-----AQLAVQE 169
+ V ++MD + + +EI+ ++ L+AE DE+E+ E D L+ +++ E
Sbjct: 120 ADKVDQIMDKIRDQQTISEEISTMISTPVGLNAEIDEDELANELDELQQMELDSKMLGAE 179
Query: 170 MPEVPTEG-PSEEQEKLDLPNV 190
P V T P+ + DLP++
Sbjct: 180 KPPVHTPAVPAVPSQVKDLPSI 201
>sp|Q6BSH2|SNF7_DEBHA Vacuolar-sorting protein SNF7 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=SNF7 PE=3 SV=2
Length = 226
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 12/192 (6%)
Query: 16 RAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQV 75
+AI+ L+ + L + + L+ I + AR I K A ALK+K+ E L ++
Sbjct: 19 KAIVELREHIQMLNKKRSHLESQIADQDALARKYIT-TNKALAKNALKRKKGYEANLMKI 77
Query: 76 DGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQ 135
+ + ++E QL IE A+ +++K G A+K I E +++ V+ MDD E
Sbjct: 78 ENQIDSLETQLTSIEGANLNLETMKAMKQGAQAMKQIHGEYDVDKVENTMDDIREQVELA 137
Query: 136 DEINAILGEKLSAE--DEEEILAEFDNLE-------AQLAVQEMPEVPTEGPSEEQEKLD 186
DEI+ + + E DE+E+ E L+ Q Q+ P P E+E D
Sbjct: 138 DEISEAISRPVGTEFVDEDELDEELAMLQEEEKEHKQQTPAQKAPVAKVSAP--EEEMPD 195
Query: 187 LPNVPTKVPVAS 198
P V P AS
Sbjct: 196 FPTVNKNKPAAS 207
>sp|Q86K93|CHMP7_DICDI Charged multivesicular body protein 7 OS=Dictyostelium discoideum
GN=chmp7 PE=3 SV=1
Length = 477
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 71/129 (55%)
Query: 11 ITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEE 70
I + D IL L+T L Q + +L IE ++ IR K+K+ ALL LKKK+ E
Sbjct: 243 IQETDFGILKLQTTYETLKQQESKLLTDIEEISNTIKESIRIKQKNHALLQLKKKKLLES 302
Query: 71 LLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEE 130
+L++ N+ + L IE A + + ESL +G + +K + EI+++ V ++DD ++
Sbjct: 303 ILEKRATASTNIHEILFSIESAKSNQQIIESLCTGVSTLKKVNQEISVDQVDSILDDYQD 362
Query: 131 AKAYQDEIN 139
A Q EI+
Sbjct: 363 AITNQREID 371
>sp|Q5ZHP5|CHM4B_CHICK Charged multivesicular body protein 4b OS=Gallus gallus GN=CHMP4B
PE=2 SV=1
Length = 227
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 1/135 (0%)
Query: 17 AILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVD 76
AI L+ L++ Q+ L+ IE E AAR K K AL ALK+K+ E+ L Q+D
Sbjct: 27 AIQRLRDTEEMLSKKQEFLEKKIEQELAAARKH-GTKNKRAALQALKRKKRYEKQLAQID 85
Query: 77 GWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQD 136
G L +E Q +E A+ V +++ A+KA ++++ V +LM D E + D
Sbjct: 86 GTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMDIDKVDELMQDIAEQQELAD 145
Query: 137 EINAILGEKLSAEDE 151
EI+ + + + +E
Sbjct: 146 EISTAISKPVGFGEE 160
>sp|Q5ZJB7|CHMP7_CHICK Charged multivesicular body protein 7 OS=Gallus gallus GN=CHMP7
PE=2 SV=1
Length = 448
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 3/162 (1%)
Query: 3 NLFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLAL 62
L K + DVD + L + L+Q + L E K AR R +K AL L
Sbjct: 224 GLHAKVSPMNDVDIGVYQLMQSEQLLSQKVESLSQEAEKCKDDARSACRAGKKQLALRCL 283
Query: 63 KKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQ 122
K KR E ++++ L V+ L I + + VF + ++G A+K ++ +E +
Sbjct: 284 KSKRRTERRIEELHSKLDAVQGILDRIYASQTDQMVFNAYQAGVGALKLSMKDVTVEKAE 343
Query: 123 KLMDDTEEAKAYQDEINAIL-GEKLSA--EDEEEILAEFDNL 161
L+D +E QDE+ L G ++ D EE+ E D+L
Sbjct: 344 NLVDQIQELCDTQDEVAQTLAGAGVNGLEMDSEELEKELDSL 385
>sp|Q86H98|CHMP4_DICDI Charged multivesicular body protein 4 OS=Dictyostelium discoideum
GN=chmp4 PE=3 SV=1
Length = 215
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 3/140 (2%)
Query: 4 LFVK-KPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLAL 62
LF K KPK D I L+ L + Q L +E E++ A+ L+ QKRK ALL L
Sbjct: 3 LFGKPKPK-QDTQETIGKLRLTLDMLEKRQTFLQDKLEKEQEKAKVLVSQKRKREALLCL 61
Query: 63 KKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQ 122
KK+ + + ++ G + QQ+ +E A + S++ G +++ + + ++ V
Sbjct: 62 KKRNNFQNEVTKLQGSYDTLNQQIFALENAKMNMEIMNSMRDGARSLRELHGHLTIDKVD 121
Query: 123 KLMDDTEEAKAYQDEI-NAI 141
++++ +E +EI NAI
Sbjct: 122 DVIEEIQEQMEIHEEISNAI 141
>sp|Q8WUX9|CHMP7_HUMAN Charged multivesicular body protein 7 OS=Homo sapiens GN=CHMP7 PE=1
SV=1
Length = 453
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 8/165 (4%)
Query: 5 FVKKPK-----ITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRAL 59
F + P+ + DVD + L + L++ + L E K+ AR R +K AL
Sbjct: 223 FARGPRAKVSPVNDVDVGVYQLMQSEQLLSRKVESLSQEAERCKEEARRACRAGKKQLAL 282
Query: 60 LALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLE 119
+LK K+ E+ ++ + L V+ L I + + VF + ++G A+K ++ +E
Sbjct: 283 RSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQMVFNAYQAGVGALKLSMKDVTVE 342
Query: 120 DVQKLMDDTEEAKAYQDEINAILGEKLSAE---DEEEILAEFDNL 161
+ L+D +E QDE++ L ++ D EE+ E D L
Sbjct: 343 KAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEELEKELDIL 387
>sp|Q9D8B3|CHM4B_MOUSE Charged multivesicular body protein 4b OS=Mus musculus GN=Chmp4b
PE=2 SV=2
Length = 224
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 1/135 (0%)
Query: 17 AILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVD 76
AI L+ L++ Q+ L+ IE E AA+ K K AL ALK+K+ E+ L Q+D
Sbjct: 25 AIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKH-GTKNKRAALQALKRKKRYEKQLAQID 83
Query: 77 GWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQD 136
G L +E Q +E A+ V +++ A+KA ++++ V +LM D + + +
Sbjct: 84 GTLSTIEFQREALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAE 143
Query: 137 EINAILGEKLSAEDE 151
EI+ + + + +E
Sbjct: 144 EISTAISKPVGFGEE 158
>sp|Q9H444|CHM4B_HUMAN Charged multivesicular body protein 4b OS=Homo sapiens GN=CHMP4B
PE=1 SV=1
Length = 224
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 1/135 (0%)
Query: 17 AILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVD 76
AI L+ L++ Q+ L+ IE E AA+ K K AL ALK+K+ E+ L Q+D
Sbjct: 25 AIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKH-GTKNKRAALQALKRKKRYEKQLAQID 83
Query: 77 GWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQD 136
G L +E Q +E A+ V +++ A+KA ++++ V +LM D + + +
Sbjct: 84 GTLSTIEFQREALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAE 143
Query: 137 EINAILGEKLSAEDE 151
EI+ + + + +E
Sbjct: 144 EISTAISKPVGFGEE 158
>sp|Q9VVI9|CHMP5_DROME Charged multivesicular body protein 5 OS=Drosophila melanogaster
GN=CG6259 PE=1 SV=2
Length = 226
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 95/207 (45%), Gaps = 32/207 (15%)
Query: 10 KITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQE 69
+ T+++ I +L+ + RK Y++Q+ + E A++ ++QK AL LK+K+A E
Sbjct: 27 RATNIEEKISNLEAELRK---YREQMSKMREG---PAKNSVKQK----ALRVLKQKKAYE 76
Query: 70 ELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTE 129
+ + + N+EQ + +A ++K G +K +IN++ ++ + DD
Sbjct: 77 QQAESLRNQSFNMEQANYAAQSLKDTQATVAAMKDGVKQMKTEYKKINIDQIEDIQDDMA 136
Query: 130 EAKAYQDEINAILGEKLSAE--DEEEILAEFDNLEAQLA----------VQEMPEVPTEG 177
+ DE+ LG D++++ AE D L ++A V + PE P+
Sbjct: 137 DMFEQADEVQEALGRTYGMPEVDDDDLQAELDALGDEIALDDDTSYLDDVVKAPEAPSRE 196
Query: 178 PSE----------EQEKLDLPNVPTKV 194
P E ++ LP +PT +
Sbjct: 197 PGADSIVPGKSTIETDEFGLPKIPTSL 223
>sp|Q5R812|CHMP7_PONAB Charged multivesicular body protein 7 OS=Pongo abelii GN=CHMP7 PE=2
SV=1
Length = 453
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 8/165 (4%)
Query: 5 FVKKPK-----ITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRAL 59
F + P + DVD + L + L++ + L E K+ AR R +K AL
Sbjct: 223 FARGPHAKVSPVNDVDVGVYQLMQSEQLLSRKVESLSQEAERCKEEARRACRAGKKQLAL 282
Query: 60 LALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLE 119
+LK K+ E+ ++ + L V+ L I + + VF + ++G A+K ++ +E
Sbjct: 283 RSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQMVFNAYQAGVGALKLSMKDVTVE 342
Query: 120 DVQKLMDDTEEAKAYQDEINAILGEKLSAE---DEEEILAEFDNL 161
+ L+D +E QDE++ L ++ D EE+ E D L
Sbjct: 343 KAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEELEKELDIL 387
>sp|Q5ABD0|SNF7_CANAL Vacuolar-sorting protein SNF7 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=SNF7 PE=3 SV=1
Length = 226
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 64/124 (51%)
Query: 16 RAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQV 75
+AI+ L+ + L + + L ++ + Q AR + K+ A ALK+K+ E L +V
Sbjct: 19 KAIVELREHIQTLNKKKNHLQQQMDDQDQLARKYVSSKQTTLAKSALKRKKGYESNLLKV 78
Query: 76 DGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQ 135
+ + +E QL IE A+ +++K G A+K I E +++ V+ MD+ E
Sbjct: 79 ENQIETLETQLISIEGANLNLETMKAMKQGAKAMKQIHGEYDVDKVEDTMDEIREQVELA 138
Query: 136 DEIN 139
DEI+
Sbjct: 139 DEIS 142
>sp|A2VDY3|CHM4A_BOVIN Charged multivesicular body protein 4a OS=Bos taurus GN=CHMP4A PE=2
SV=1
Length = 222
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 3/132 (2%)
Query: 1 MGNLFV--KKPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRA 58
+G LF KK K + AI LK + L + Q+ L+ IE E QAA+ K K A
Sbjct: 4 LGRLFGRGKKEKGPTPEEAIQKLKETEKILIKKQEFLEQKIEQELQAAKKH-GTKNKRAA 62
Query: 59 LLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINL 118
L AL++K+ E+ L Q DG L +E Q IE A+ V +++ +K ++++
Sbjct: 63 LQALRRKKRLEQQLAQTDGTLSTLEFQREAIENATTNAEVLRTMELAAQGLKKAYQDMDI 122
Query: 119 EDVQKLMDDTEE 130
+ V +LM D E
Sbjct: 123 DKVDELMADITE 134
>sp|Q9BY43|CHM4A_HUMAN Charged multivesicular body protein 4a OS=Homo sapiens GN=CHMP4A
PE=1 SV=3
Length = 222
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 95/200 (47%), Gaps = 4/200 (2%)
Query: 1 MGNLFVK--KPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRA 58
+G LF K K K + AI LK + L + Q+ L+ I+ E Q A+ K K A
Sbjct: 4 LGRLFGKGKKEKGPTPEEAIQKLKETEKILIKKQEFLEQKIQQELQTAKKY-GTKNKRAA 62
Query: 59 LLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINL 118
L AL++K+ E+ L Q DG L +E Q IE A+ V +++ ++K ++++
Sbjct: 63 LQALRRKKRFEQQLAQTDGTLSTLEFQREAIENATTNAEVLRTMELAAQSMKKAYQDMDI 122
Query: 119 EDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGP 178
+ V +LM D E + +I+ + + D+ + + LE + E+ G
Sbjct: 123 DKVDELMTDITEQQEVAQQISDAISRPMGFGDDVDEDELLEELEELEQEELAQELLNVGD 182
Query: 179 SEEQEKLDLPNVP-TKVPVA 197
EE+ + LP+VP T +P
Sbjct: 183 KEEEPSVKLPSVPSTHLPAG 202
>sp|Q5XGW6|CHM4B_XENLA Charged multivesicular body protein 4b OS=Xenopus laevis GN=chmp4b
PE=2 SV=1
Length = 222
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 91/195 (46%), Gaps = 9/195 (4%)
Query: 1 MGNLFV---KKPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDR 57
+G LF K K AI L+ LA+ Q+ L+ IE E A+ K K
Sbjct: 4 IGKLFGTGGKGAKGPSPQEAIQKLRDTEEMLAKKQEFLEKKIEQELVTAKKH-GTKNKRA 62
Query: 58 ALLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEIN 117
AL ALK+K+ E+ L Q+DG L +E Q +E A+ V +++ A+KA ++
Sbjct: 63 ALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMD 122
Query: 118 LEDVQKLMDDTEEAKAYQDEINAILGEKLS-AEDEEEILAEFDNLEAQLAVQEMPEVPTE 176
+E V +LM D + + EI+ + + + ED +E + E + + + +
Sbjct: 123 IEKVDELMQDIADQQELAQEISDAISKPVGFGEDFDEDELMAELEELEQEELDKNLLEVQ 182
Query: 177 GPSEEQEKLDLPNVP 191
GP E + LPNVP
Sbjct: 183 GP----ETVPLPNVP 193
>sp|Q6GL11|CHM4B_XENTR Charged multivesicular body protein 4b OS=Xenopus tropicalis
GN=chmp4b PE=2 SV=1
Length = 222
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 98/215 (45%), Gaps = 13/215 (6%)
Query: 1 MGNLFV---KKPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDR 57
+G LF K K AI L+ L + Q+ L+ IE E A+ K K
Sbjct: 4 IGKLFGTGGKGAKGPSPQEAIQKLRDTEEMLTKKQEFLEKKIEQELVTAKKH-GTKNKRA 62
Query: 58 ALLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEIN 117
AL ALK+K+ E+ L Q+DG L +E Q +E A+ V +++ A+KA ++
Sbjct: 63 ALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMD 122
Query: 118 LEDVQKLMDDTEEAKAYQDEINAILGEKLS-AEDEEEILAEFDNLEAQLAVQEMPEVPTE 176
+E V +LM D + + EI+ + + + ED +E + E + + + +
Sbjct: 123 IEKVDELMQDIADQQELAQEISDAISKPVGFGEDFDEDELMAELEELEQEELDKNLLEVQ 182
Query: 177 GPSEEQEKLDLPNVPTKV----PVASRVVADDAEI 207
GP E + LPNVP V PV + DD ++
Sbjct: 183 GP----ETVPLPNVPAAVLPAKPVKKKQEEDDDDM 213
>sp|Q8R1T1|CHMP7_MOUSE Charged multivesicular body protein 7 OS=Mus musculus GN=Chmp7 PE=1
SV=1
Length = 451
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 8/165 (4%)
Query: 5 FVKKPK-----ITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRAL 59
F + P + DVD + L + L++ + L E K+ AR R +K AL
Sbjct: 223 FARGPHAKVSPVNDVDVGVYQLMQSEQLLSRKVESLSQESERCKEEARRACRAGKKQLAL 282
Query: 60 LALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLE 119
+LK K+ E+ ++ + L V+ L I + + VF + ++G A+K ++ +E
Sbjct: 283 RSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQMVFNAYQAGVGALKLSMKDVTVE 342
Query: 120 DVQKLMDDTEEAKAYQDEINAILGEKLSAE---DEEEILAEFDNL 161
+ L+D +E QDE++ L ++ D EE+ E D L
Sbjct: 343 KAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEELEKELDIL 387
>sp|Q6GNN8|CHM4C_XENLA Charged multivesicular body protein 4c OS=Xenopus laevis GN=chmp4c
PE=2 SV=1
Length = 227
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 1/123 (0%)
Query: 17 AILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVD 76
A+ L+ L + Q+ L+ IE E A+ K K AL ALKKK+ E+ L Q+D
Sbjct: 29 ALFKLRETEEMLTKKQEYLEKKIELELATAKKH-GTKNKRAALQALKKKKRLEKQLAQID 87
Query: 77 GWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQD 136
G L +E Q +E + V +++ A+KA ++LE + LM D E +
Sbjct: 88 GTLSTIEFQREALENSHTNTEVLKNMGYAAKAMKAAHENMDLEKIDDLMQDIHEQQDVAQ 147
Query: 137 EIN 139
EI+
Sbjct: 148 EIS 150
>sp|Q9D7F7|CHM4C_MOUSE Charged multivesicular body protein 4c OS=Mus musculus GN=Chmp4c
PE=2 SV=1
Length = 232
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 12/177 (6%)
Query: 17 AILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVD 76
A+ L+ LA+ Q+ L+ I+ E A+ Q ++ AL ALK+K+ E+ L QVD
Sbjct: 25 ALARLRETEEMLAKKQEYLENRIQRELALAKKHGSQNKRA-ALQALKRKKRFEKQLTQVD 83
Query: 77 GWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQD 136
G L +E Q +E + V ++ A+KA+ ++L + LM D E +
Sbjct: 84 GTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKAVHDNMDLNKIDDLMQDITEQQDIAQ 143
Query: 137 EINAILGEKLSAEDEEEILAEF-DNLEAQLAVQEMPEVPTEGPSEEQEKLDLPNVPT 192
EI+ +++ +F D + + E+ E+ E +++ L+LPNVP+
Sbjct: 144 EISEAFSQRV----------QFADGFDEAELLAELEELEQEELNKKMTSLELPNVPS 190
>sp|P0CR54|SNF7_CRYNJ Vacuolar-sorting protein SNF7 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=SNF7 PE=3 SV=1
Length = 220
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 17 AILSLKTQRRKLAQYQQQLDVVIEAE-KQAARDLIRQKRKDRALLALKKKRAQEELLKQV 75
AI+ L+ Q L + ++ L IE E K+A + KR A+ AL++K+A E L ++
Sbjct: 21 AIVGLRQQLLMLEKKEEFLQKKIEEEMKKAKANATGNKR--LAMAALRQKKAHENELDRI 78
Query: 76 DGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEE 130
G + +E Q+ IE A+ ++K G +A+K I S + E V MD E
Sbjct: 79 AGTRLTLETQVNAIESANLNAETMVAMKKGADALKGIHSNLTAEGVDATMDKIRE 133
>sp|P0CR55|SNF7_CRYNB Vacuolar-sorting protein SNF7 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=SNF7 PE=3 SV=1
Length = 220
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 17 AILSLKTQRRKLAQYQQQLDVVIEAE-KQAARDLIRQKRKDRALLALKKKRAQEELLKQV 75
AI+ L+ Q L + ++ L IE E K+A + KR A+ AL++K+A E L ++
Sbjct: 21 AIVGLRQQLLMLEKKEEFLQKKIEEEMKKAKANATGNKR--LAMAALRQKKAHENELDRI 78
Query: 76 DGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEE 130
G + +E Q+ IE A+ ++K G +A+K I S + E V MD E
Sbjct: 79 AGTRLTLETQVNAIESANLNAETMVAMKKGADALKGIHSNLTAEGVDATMDKIRE 133
>sp|Q569C1|CHM4C_RAT Charged multivesicular body protein 4c OS=Rattus norvegicus
GN=Chmp4c PE=2 SV=1
Length = 232
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 12/166 (7%)
Query: 28 LAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLA 87
+A+ Q+ L+ I+ E A+ Q ++ AL ALK+K+ E+ L Q+DG L +E Q
Sbjct: 36 MAKKQEYLENRIQRELALAKKHGSQNKRA-ALQALKRKKRFEKQLTQIDGTLSTIEFQRE 94
Query: 88 DIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS 147
+E + V ++ A+KA+ ++L + LM D E + EI+ +++
Sbjct: 95 ALENSHTNTEVLRNMGFAAKAMKAVHENMDLNKIDDLMQDITEQQDIAQEISEAFSQRV- 153
Query: 148 AEDEEEILAEF-DNLEAQLAVQEMPEVPTEGPSEEQEKLDLPNVPT 192
+F D + + E+ E+ E +++ ++LPNVP+
Sbjct: 154 ---------QFADGFDEDELLAELEELEQEELNKKMTSMELPNVPS 190
>sp|Q6IQ73|CHM4C_DANRE Charged multivesicular body protein 4c OS=Danio rerio GN=chmp4c
PE=2 SV=1
Length = 224
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 1/123 (0%)
Query: 17 AILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVD 76
AI L+ LA+ Q L+ I+AE A+ K K AL ALK+K+ E+ L Q+D
Sbjct: 23 AIQKLRETEEMLAKKQDFLEKKIDAELLIAKK-NGTKNKRAALQALKRKKRYEKQLAQID 81
Query: 77 GWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQD 136
G L +E Q +E A+ V +++ A+K ++++ V LM D E +
Sbjct: 82 GTLSTIEFQREALENANTNTEVLKNMGFAAKAMKTAHENMDIDKVDDLMQDITEQQELAQ 141
Query: 137 EIN 139
EI+
Sbjct: 142 EIS 144
>sp|Q7ZVC4|CHM4B_DANRE Charged multivesicular body protein 4b OS=Danio rerio GN=chmp4b
PE=2 SV=1
Length = 220
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 1/123 (0%)
Query: 17 AILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVD 76
AI L+ L + Q+ L+ IE E A+ K K AL ALK+K+ E+ L Q+D
Sbjct: 23 AIQRLRETEEMLTKKQEFLEKKIEQELVTAKK-NGTKNKRAALQALKRKKRYEKQLAQID 81
Query: 77 GWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQD 136
G L +E Q +E A V +++ A+KA ++++ V +LM D E +
Sbjct: 82 GTLSTIEFQREALENAHTNTEVIKNMGYAAKAMKAAHDNMDIDKVDELMQDIIEQQELAQ 141
Query: 137 EIN 139
EI+
Sbjct: 142 EIS 144
>sp|Q4QQV8|CHMP5_RAT Charged multivesicular body protein 5 OS=Rattus norvegicus GN=Chmp5
PE=2 SV=1
Length = 219
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 29/197 (14%)
Query: 14 VDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLK 73
+D+ I L + L +Y+ Q+ + E A+++++QK AL LK+KR E+
Sbjct: 31 IDKKISRLDAE---LVKYKDQIKKMREG---PAKNMVKQK----ALRVLKQKRMYEQQRD 80
Query: 74 QVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKA 133
+ N+EQ I+ K +++K G +K E+ ++ ++ L D E+
Sbjct: 81 NLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAYKEVKIDQIEDLQDQLEDMME 140
Query: 134 YQDEINAILGEKLSAE--DEEEILAEFDNLEAQLAVQE----------MPEVPTEGPSEE 181
+EI LG DE+++ AE D L +L E P +P P++
Sbjct: 141 DANEIQEALGRSYGTPELDEDDLEAELDALGDELLADEDSSYLDEAASAPAIPEGVPTDT 200
Query: 182 QEK-------LDLPNVP 191
+ K LP +P
Sbjct: 201 KNKDGVLVDEFGLPQIP 217
>sp|Q9D7S9|CHMP5_MOUSE Charged multivesicular body protein 5 OS=Mus musculus GN=Chmp5 PE=2
SV=1
Length = 219
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 29/197 (14%)
Query: 14 VDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLK 73
+D+ I L + L +Y+ Q+ + E A+++++QK AL LK+KR E+
Sbjct: 31 IDKKISRLDAE---LVKYKDQIKKMREG---PAKNMVKQK----ALRVLKQKRMYEQQRD 80
Query: 74 QVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKA 133
+ N+EQ I+ K +++K G +K E+ ++ ++ L D E+
Sbjct: 81 NLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAYKEVKIDQIEDLQDQLEDMME 140
Query: 134 YQDEINAILGEKLSAE--DEEEILAEFDNLEAQLAVQE----------MPEVPTEGPSEE 181
+EI LG DE+++ AE D L +L E P +P P++
Sbjct: 141 DANEIQEALGRSYGTPELDEDDLEAELDALGDELLADEDSSYLDEAASAPAIPEGVPTDT 200
Query: 182 QEK-------LDLPNVP 191
+ K LP +P
Sbjct: 201 KNKDGVLVDEFGLPQIP 217
>sp|Q7T0X5|CHMP7_XENLA Charged multivesicular body protein 7 OS=Xenopus laevis GN=chmp7
PE=2 SV=1
Length = 422
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 82/182 (45%), Gaps = 24/182 (13%)
Query: 46 ARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSG 105
AR R K++AL L+K++ E + ++ N++ L I A + V + + G
Sbjct: 254 ARTYNRAGNKNQALRCLRKRKLVERRITELQNKQDNIQGILERISAAETDRKVVSAYQMG 313
Query: 106 TNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQL 165
+A+K ++ LE + ++D +E QD+++ L A+ + D+LE +L
Sbjct: 314 VSALKQALKDVTLEKAESIVDQIQEYCDLQDDLSQTLSSVTDAD------VDSDDLEREL 367
Query: 166 AVQEMPEVPTEGPSEEQEKLDLPNVPT-------KVPVASRVVADDAEIAPAEASTKRRV 218
E E+ +DLP+VP+ K P ++ D A +PA+ S R V
Sbjct: 368 ---------NEILQNEEMIIDLPDVPSGPVIISPKRPTEWKM--DQAAHSPADGSFLRSV 416
Query: 219 ME 220
E
Sbjct: 417 PE 418
>sp|Q6PBQ2|CHMP7_DANRE Charged multivesicular body protein 7 OS=Danio rerio GN=chmp7 PE=2
SV=1
Length = 457
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 84/185 (45%), Gaps = 9/185 (4%)
Query: 11 ITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEE 70
+++VD I L+ + L + + L E KQ A+ L+++ +K +AL L+ + E+
Sbjct: 225 VSEVDLGIYQLQCSEKLLEERVEALGHEAEKCKQQAKSLLKEGKKSQALRCLRGSKRVEK 284
Query: 71 LLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEE 130
++ L V+ L I + + V ++ ++G A++ + +E + L+D +E
Sbjct: 285 KADRLFAQLETVKGILDRIANSQTDRLVMQAYQAGVAALRISLKGVTVERAENLVDQIQE 344
Query: 131 AKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPE------VPTEGPSEEQEK 184
QDE+N L A D E + + L + +PE VPT P K
Sbjct: 345 LCDTQDEVNQTLAS--GAPDAGEDSEDLEEELKSLMEKSVPENDLFPAVPTH-PITPPRK 401
Query: 185 LDLPN 189
DLP+
Sbjct: 402 TDLPD 406
>sp|Q5FW14|CHMP7_XENTR Charged multivesicular body protein 7 OS=Xenopus tropicalis
GN=chmp7 PE=2 SV=1
Length = 468
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 92/212 (43%), Gaps = 38/212 (17%)
Query: 46 ARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSG 105
AR R K +AL L+K++ E + ++ V+ L I A + V + + G
Sbjct: 254 ARTYNRAGNKHQALRCLRKRKLLERRITELQNKQDTVQGILERIAAAETDRKVVSAYQMG 313
Query: 106 TNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAE-DEEEILAEF-DNLEA 163
+A+K ++ +E + ++D +E QD+++ L A+ D E++ E D L+
Sbjct: 314 VSALKLALKDVTMEKAESIVDQIQEYCDLQDDLSQTLASVSDADIDSEDLEKELNDILQN 373
Query: 164 QLAVQEMPEVPTEGP------------------SEEQEK------------LDLPNVPTK 193
+ + ++P+VP+ GP SE+ EK +DLP+VP+
Sbjct: 374 KEMIVDLPDVPS-GPVVISPQRPTEWETDQDIDSEDLEKELNDILQKEEMIVDLPDVPSG 432
Query: 194 VPVAS-----RVVADDAEIAPAEASTKRRVME 220
V S D A +PA+ S R V E
Sbjct: 433 PVVISPQRPTEWKTDQASRSPADGSFSRSVPE 464
>sp|Q96CF2|CHM4C_HUMAN Charged multivesicular body protein 4c OS=Homo sapiens GN=CHMP4C
PE=1 SV=1
Length = 233
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 1/135 (0%)
Query: 17 AILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVD 76
A++ L+ L + Q+ L+ I+ E A+ Q ++ AL ALK+K+ E+ L Q+D
Sbjct: 25 ALVRLRETEEMLGKKQEYLENRIQREIALAKKHGTQNKRA-ALQALKRKKRFEKQLTQID 83
Query: 77 GWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQD 136
G L +E Q +E + V ++ A+K++ ++L + LM + E +
Sbjct: 84 GTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKSVHENMDLNKIDDLMQEITEQQDIAQ 143
Query: 137 EINAILGEKLSAEDE 151
EI+ +++ D+
Sbjct: 144 EISEAFSQRVGFGDD 158
>sp|P59074|CG301_HUMAN Putative protein CGI-301 OS=Homo sapiens GN=CGI-301 PE=5 SV=1
Length = 171
Score = 38.1 bits (87), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%)
Query: 53 KRKDRALLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAI 112
K K AL ALK+K+ E+ L Q+DG L +E Q +E A+ V +++ S A KA
Sbjct: 20 KNKPAALQALKRKKRYEKQLAQIDGTLSTIEFQQQALENANTNTEVLKNMGSAAKAKKAA 79
Query: 113 QSEINLEDVQKLMDDTEEAKAYQDEINAIL 142
++++ V +LM D + + +EI+ +
Sbjct: 80 HDNMDIDKVDELMQDIADQQELGEEISTAI 109
>sp|Q5RBR3|CHMP5_PONAB Charged multivesicular body protein 5 OS=Pongo abelii GN=CHMP5 PE=2
SV=1
Length = 219
Score = 37.4 bits (85), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 29/197 (14%)
Query: 14 VDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLK 73
+D+ I L + L +Y+ Q+ + E A+++++QK AL LK+KR E+
Sbjct: 31 IDKKISRLDAE---LVKYKDQIKKMREG---PAKNMVKQK----ALRVLKQKRMYEQQRD 80
Query: 74 QVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKA 133
+ N+EQ I+ K +++K G +K ++ ++ ++ L D E+
Sbjct: 81 NLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAYKQVKIDQIEDLQDQLEDMME 140
Query: 134 YQDEINAILGEKLSAE--DEEEILAEFDNLEAQLAVQE----------MPEVPTEGPSEE 181
+EI L DE+++ AE D L +L E P +P P++
Sbjct: 141 DANEIQEALSRSYGTPELDEDDLEAELDALGDELLADEDSSYLDEAASAPAIPEGVPTDT 200
Query: 182 QEK-------LDLPNVP 191
+ K LP +P
Sbjct: 201 KNKDGVLVDEFGLPQIP 217
>sp|Q9NZZ3|CHMP5_HUMAN Charged multivesicular body protein 5 OS=Homo sapiens GN=CHMP5 PE=1
SV=1
Length = 219
Score = 37.4 bits (85), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 29/197 (14%)
Query: 14 VDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLK 73
+D+ I L + L +Y+ Q+ + E A+++++QK AL LK+KR E+
Sbjct: 31 IDKKISRLDAE---LVKYKDQIKKMREG---PAKNMVKQK----ALRVLKQKRMYEQQRD 80
Query: 74 QVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKA 133
+ N+EQ I+ K +++K G +K ++ ++ ++ L D E+
Sbjct: 81 NLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAYKQVKIDQIEDLQDQLEDMME 140
Query: 134 YQDEINAILGEKLSAE--DEEEILAEFDNLEAQLAVQE----------MPEVPTEGPSEE 181
+EI L DE+++ AE D L +L E P +P P++
Sbjct: 141 DANEIQEALSRSYGTPELDEDDLEAELDALGDELLADEDSSYLDEAASAPAIPEGVPTDT 200
Query: 182 QEK-------LDLPNVP 191
+ K LP +P
Sbjct: 201 KNKDGVLVDEFGLPQIP 217
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.127 0.327
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,749,865
Number of Sequences: 539616
Number of extensions: 3055787
Number of successful extensions: 18257
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 906
Number of HSP's that attempted gapping in prelim test: 17203
Number of HSP's gapped (non-prelim): 1792
length of query: 225
length of database: 191,569,459
effective HSP length: 113
effective length of query: 112
effective length of database: 130,592,851
effective search space: 14626399312
effective search space used: 14626399312
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.3 bits)