Query 027325
Match_columns 225
No_of_seqs 193 out of 870
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 08:15:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027325.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027325hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2910 Uncharacterized conser 100.0 1E-45 2.2E-50 302.9 25.7 198 1-199 1-199 (209)
2 PTZ00446 vacuolar sorting prot 100.0 2.6E-41 5.6E-46 282.0 24.1 170 1-170 1-182 (191)
3 KOG1656 Protein involved in gl 100.0 2.4E-41 5.2E-46 279.6 22.6 198 1-206 4-212 (221)
4 PTZ00464 SNF-7-like protein; P 100.0 1.9E-39 4.1E-44 275.5 26.2 189 1-197 1-203 (211)
5 KOG1655 Protein involved in va 100.0 1.7E-31 3.8E-36 219.9 24.1 176 1-177 1-189 (218)
6 PF03357 Snf7: Snf7; InterPro 100.0 3.4E-30 7.5E-35 210.4 9.2 167 16-194 1-170 (171)
7 KOG2911 Uncharacterized conser 100.0 6.7E-27 1.4E-31 212.6 21.6 159 9-167 226-388 (439)
8 KOG3230 Vacuolar assembly/sort 99.7 7.5E-15 1.6E-19 121.6 19.6 163 1-168 1-169 (224)
9 KOG3229 Vacuolar sorting prote 99.6 8.3E-13 1.8E-17 110.4 21.9 173 4-176 3-183 (227)
10 KOG3231 Predicted assembly/vac 99.4 1.4E-11 3.1E-16 99.9 18.1 165 2-167 1-167 (208)
11 KOG3232 Vacuolar assembly/sort 98.9 3.5E-06 7.6E-11 69.2 22.8 147 14-168 7-162 (203)
12 PF04012 PspA_IM30: PspA/IM30 98.5 2.3E-05 5E-10 66.9 18.7 148 13-162 41-202 (221)
13 PRK10698 phage shock protein P 98.4 0.0002 4.3E-09 61.7 21.9 150 16-165 45-217 (222)
14 TIGR02977 phageshock_pspA phag 98.3 0.00053 1.1E-08 58.8 21.2 127 16-142 45-185 (219)
15 PTZ00464 SNF-7-like protein; P 98.1 0.00045 9.7E-09 59.1 18.3 98 20-117 15-115 (211)
16 COG1842 PspA Phage shock prote 98.0 0.0021 4.5E-08 55.6 19.7 144 19-163 48-205 (225)
17 KOG3230 Vacuolar assembly/sort 97.9 0.0072 1.6E-07 50.9 20.0 150 13-176 20-184 (224)
18 KOG1655 Protein involved in va 97.6 0.0042 9.1E-08 52.2 14.2 135 20-155 16-159 (218)
19 PF03357 Snf7: Snf7; InterPro 97.2 0.00058 1.3E-08 55.3 5.4 153 14-176 6-169 (171)
20 KOG1656 Protein involved in gl 96.7 0.17 3.7E-06 43.0 15.9 136 45-200 62-209 (221)
21 PTZ00446 vacuolar sorting prot 95.5 1.3 2.8E-05 37.5 16.2 45 65-109 83-127 (191)
22 COG5491 VPS24 Conserved protei 95.2 1.8 3.8E-05 37.0 17.2 61 74-134 46-107 (204)
23 KOG2910 Uncharacterized conser 94.0 3.3 7.2E-05 35.0 16.7 101 18-125 11-116 (209)
24 PF05852 DUF848: Gammaherpesvi 92.3 3.7 8.1E-05 33.2 11.4 27 117-143 87-113 (146)
25 KOG2911 Uncharacterized conser 91.7 11 0.00024 35.6 15.2 125 10-144 219-352 (439)
26 KOG3229 Vacuolar sorting prote 91.1 9 0.0002 32.8 14.3 145 20-176 29-186 (227)
27 KOG3231 Predicted assembly/vac 90.7 7.5 0.00016 32.2 11.6 152 16-176 22-183 (208)
28 COG5491 VPS24 Conserved protei 90.1 11 0.00024 32.2 15.9 137 21-165 5-148 (204)
29 PRK04778 septation ring format 89.8 4.6 0.0001 39.4 11.6 105 57-166 152-266 (569)
30 smart00685 DM14 Repeats in fly 88.7 2.5 5.3E-05 29.0 6.3 44 33-76 2-45 (59)
31 PF06160 EzrA: Septation ring 88.5 26 0.00056 34.2 16.2 38 58-95 149-186 (560)
32 PF07743 HSCB_C: HSCB C-termin 87.0 7.3 0.00016 27.4 8.3 50 26-75 27-76 (78)
33 PRK14162 heat shock protein Gr 86.5 13 0.00028 31.5 10.8 104 14-121 37-141 (194)
34 PF04100 Vps53_N: Vps53-like, 84.3 35 0.00076 31.7 15.9 41 93-133 131-171 (383)
35 PRK14143 heat shock protein Gr 81.4 35 0.00075 29.8 11.6 100 15-118 66-167 (238)
36 PRK14146 heat shock protein Gr 81.4 25 0.00054 30.2 10.6 54 68-121 103-156 (215)
37 PRK14140 heat shock protein Gr 80.8 32 0.00069 29.0 10.8 18 69-86 87-104 (191)
38 PF04065 Not3: Not1 N-terminal 79.8 15 0.00033 31.9 8.8 94 14-135 120-213 (233)
39 KOG0994 Extracellular matrix g 79.7 77 0.0017 34.1 14.8 132 11-150 1407-1542(1758)
40 PRK14160 heat shock protein Gr 77.6 45 0.00098 28.6 11.8 30 17-46 55-84 (211)
41 PF08651 DASH_Duo1: DASH compl 76.7 18 0.0004 26.0 7.1 63 68-145 3-65 (78)
42 PRK14148 heat shock protein Gr 75.1 50 0.0011 27.9 11.3 49 69-117 90-138 (195)
43 PHA03161 hypothetical protein; 73.9 47 0.001 27.0 12.8 58 118-175 88-147 (150)
44 PF10506 MCC-bdg_PDZ: PDZ doma 73.8 28 0.00061 24.4 9.3 64 20-83 2-66 (67)
45 PRK14163 heat shock protein Gr 73.3 60 0.0013 28.0 10.9 42 81-122 95-136 (214)
46 PRK14158 heat shock protein Gr 73.2 56 0.0012 27.6 12.0 104 11-119 35-139 (194)
47 smart00502 BBC B-Box C-termina 73.0 35 0.00077 25.2 13.4 39 12-50 17-55 (127)
48 PRK01773 hscB co-chaperone Hsc 72.2 55 0.0012 27.1 9.9 56 28-83 116-171 (173)
49 PRK14159 heat shock protein Gr 71.4 59 0.0013 27.1 10.3 56 67-122 71-126 (176)
50 PF11068 YlqD: YlqD protein; 71.4 49 0.0011 26.2 9.3 66 25-90 22-87 (131)
51 PRK05014 hscB co-chaperone Hsc 71.0 57 0.0012 26.8 10.0 55 28-82 115-169 (171)
52 PRK14154 heat shock protein Gr 70.1 70 0.0015 27.4 11.2 19 69-87 102-120 (208)
53 TIGR00714 hscB Fe-S protein as 70.1 35 0.00076 27.6 8.2 53 27-79 101-153 (157)
54 PRK14155 heat shock protein Gr 69.6 71 0.0015 27.3 11.0 55 67-121 61-118 (208)
55 PF05659 RPW8: Arabidopsis bro 67.8 63 0.0014 26.0 11.1 69 45-114 77-145 (147)
56 PRK03578 hscB co-chaperone Hsc 65.7 59 0.0013 26.9 8.8 55 28-82 119-174 (176)
57 PRK14153 heat shock protein Gr 65.6 83 0.0018 26.6 9.8 13 73-85 87-99 (194)
58 PRK14149 heat shock protein Gr 65.4 83 0.0018 26.6 9.7 54 68-121 85-138 (191)
59 PF06248 Zw10: Centromere/kine 65.2 1.4E+02 0.0031 29.1 15.5 38 77-114 80-117 (593)
60 PF01025 GrpE: GrpE; InterPro 64.2 12 0.00025 30.1 4.2 46 72-117 64-109 (165)
61 PF02403 Seryl_tRNA_N: Seryl-t 62.6 61 0.0013 24.0 8.8 38 16-53 29-66 (108)
62 PF03962 Mnd1: Mnd1 family; I 62.3 92 0.002 26.0 13.9 32 18-49 64-95 (188)
63 PF11285 DUF3086: Protein of u 61.5 71 0.0015 28.4 8.7 68 15-82 3-70 (283)
64 PF14282 FlxA: FlxA-like prote 60.3 58 0.0013 24.6 7.2 27 63-89 51-77 (106)
65 cd00632 Prefoldin_beta Prefold 60.0 70 0.0015 23.8 10.5 93 65-165 8-100 (105)
66 PF05377 FlaC_arch: Flagella a 59.9 51 0.0011 22.3 6.0 40 11-50 2-41 (55)
67 PF03908 Sec20: Sec20; InterP 59.8 65 0.0014 23.4 8.5 61 59-119 8-69 (92)
68 PRK14145 heat shock protein Gr 59.6 1.1E+02 0.0024 26.0 11.8 47 68-117 94-140 (196)
69 PF03961 DUF342: Protein of un 58.8 1.3E+02 0.0029 28.3 10.9 74 16-89 334-408 (451)
70 PRK09343 prefoldin subunit bet 58.7 12 0.00025 29.1 3.2 37 17-53 79-115 (121)
71 PF00804 Syntaxin: Syntaxin; 58.2 46 0.001 23.7 6.3 48 119-166 7-55 (103)
72 COG0576 GrpE Molecular chapero 58.1 1.1E+02 0.0024 25.6 11.3 57 65-121 82-139 (193)
73 PRK11020 hypothetical protein; 58.0 87 0.0019 24.3 7.7 51 28-78 3-53 (118)
74 PF09325 Vps5: Vps5 C terminal 57.8 1.1E+02 0.0024 25.5 12.0 36 8-43 16-51 (236)
75 PF10458 Val_tRNA-synt_C: Valy 57.8 58 0.0013 22.3 7.3 18 24-41 5-22 (66)
76 PRK10869 recombination and rep 57.8 1.9E+02 0.0042 28.2 14.7 10 153-162 328-337 (553)
77 PF04065 Not3: Not1 N-terminal 57.6 1.2E+02 0.0026 26.4 9.5 28 118-145 165-192 (233)
78 PRK14144 heat shock protein Gr 57.0 1.2E+02 0.0027 25.7 10.4 50 68-118 94-143 (199)
79 PRK14147 heat shock protein Gr 55.8 1.2E+02 0.0025 25.1 10.6 50 68-119 67-116 (172)
80 COG1730 GIM5 Predicted prefold 55.7 92 0.002 25.1 8.0 38 13-50 91-128 (145)
81 PRK14151 heat shock protein Gr 55.3 1.2E+02 0.0026 25.2 10.1 18 69-86 70-87 (176)
82 PRK11637 AmiB activator; Provi 55.0 1.8E+02 0.004 27.1 18.5 18 95-112 168-185 (428)
83 PF08651 DASH_Duo1: DASH compl 55.0 77 0.0017 22.8 8.8 44 67-110 16-60 (78)
84 cd07637 BAR_ACAP3 The Bin/Amph 54.2 1.3E+02 0.0029 25.3 9.5 31 24-54 3-33 (200)
85 PF10146 zf-C4H2: Zinc finger- 53.9 1.5E+02 0.0032 25.7 18.4 75 17-93 2-76 (230)
86 PF03670 UPF0184: Uncharacteri 53.0 86 0.0019 23.0 6.7 39 16-54 26-64 (83)
87 PRK05431 seryl-tRNA synthetase 51.8 1.6E+02 0.0035 27.7 10.2 33 17-49 29-61 (425)
88 COG5415 Predicted integral mem 50.8 90 0.0019 27.0 7.4 38 1-41 1-40 (251)
89 COG1382 GimC Prefoldin, chaper 50.1 30 0.00065 27.1 4.2 37 13-49 74-110 (119)
90 PF04012 PspA_IM30: PspA/IM30 50.0 1.5E+02 0.0033 24.8 18.6 121 19-139 54-188 (221)
91 PF09340 NuA4: Histone acetylt 49.6 48 0.001 23.9 4.9 30 59-88 5-34 (80)
92 PRK01356 hscB co-chaperone Hsc 49.5 1.3E+02 0.0028 24.6 8.1 50 27-76 110-159 (166)
93 TIGR02338 gimC_beta prefoldin, 48.5 1.1E+02 0.0025 22.9 9.7 91 66-164 13-103 (110)
94 KOG0804 Cytoplasmic Zn-finger 47.3 2.7E+02 0.0058 26.8 15.4 71 20-90 329-402 (493)
95 TIGR00634 recN DNA repair prot 47.2 2.8E+02 0.0061 27.0 16.9 15 98-112 249-263 (563)
96 PRK10929 putative mechanosensi 47.1 3.9E+02 0.0085 28.7 13.1 115 10-131 334-455 (1109)
97 COG3078 Uncharacterized protei 46.5 53 0.0012 26.8 5.2 15 148-162 150-164 (169)
98 PF10458 Val_tRNA-synt_C: Valy 46.5 93 0.002 21.2 6.5 27 14-40 2-28 (66)
99 KOG2180 Late Golgi protein sor 46.3 3.4E+02 0.0074 27.7 15.0 107 14-131 77-184 (793)
100 PLN02678 seryl-tRNA synthetase 45.6 2.8E+02 0.0061 26.5 13.5 21 154-174 90-112 (448)
101 COG5665 NOT5 CCR4-NOT transcri 45.1 2.8E+02 0.006 26.3 13.1 26 108-133 153-179 (548)
102 PF04977 DivIC: Septum formati 45.0 37 0.00081 23.4 3.8 31 12-42 20-50 (80)
103 PRK14141 heat shock protein Gr 44.8 2E+02 0.0043 24.6 10.1 17 70-86 82-98 (209)
104 PRK14139 heat shock protein Gr 43.2 2E+02 0.0043 24.1 11.4 22 18-39 34-55 (185)
105 PRK00888 ftsB cell division pr 43.1 57 0.0012 24.7 4.7 40 4-43 20-61 (105)
106 KOG3584 cAMP response element 43.0 88 0.0019 28.3 6.5 32 53-84 298-329 (348)
107 PF09726 Macoilin: Transmembra 42.1 3.9E+02 0.0084 27.1 15.3 18 125-142 621-638 (697)
108 PF05667 DUF812: Protein of un 42.0 3.6E+02 0.0078 26.8 13.3 28 119-146 505-532 (594)
109 PRK00294 hscB co-chaperone Hsc 41.9 2E+02 0.0043 23.7 10.0 50 33-82 117-171 (173)
110 TIGR00414 serS seryl-tRNA synt 41.6 3E+02 0.0065 25.8 10.3 34 16-49 30-63 (418)
111 cd00187 TOP4c DNA Topoisomeras 41.4 2.4E+02 0.0051 27.0 9.6 17 149-165 405-421 (445)
112 PF10212 TTKRSYEDQ: Predicted 41.4 3.5E+02 0.0076 26.4 12.3 58 29-86 419-478 (518)
113 PF09728 Taxilin: Myosin-like 41.3 2.7E+02 0.0059 25.1 16.8 78 56-136 50-127 (309)
114 PRK14157 heat shock protein Gr 41.2 2.4E+02 0.0052 24.5 9.2 12 24-35 85-96 (227)
115 PTZ00419 valyl-tRNA synthetase 41.1 1.2E+02 0.0027 31.7 8.3 24 20-43 926-949 (995)
116 PLN02943 aminoacyl-tRNA ligase 41.0 1E+02 0.0023 32.2 7.7 28 19-46 885-912 (958)
117 PF04100 Vps53_N: Vps53-like, 40.4 3.1E+02 0.0067 25.5 13.9 77 16-95 18-103 (383)
118 KOG0972 Huntingtin interacting 40.1 2.9E+02 0.0064 25.2 12.1 28 118-145 307-334 (384)
119 COG5124 Protein predicted to b 40.0 2.3E+02 0.005 23.9 8.6 65 21-85 87-152 (209)
120 KOG3501 Molecular chaperone Pr 39.1 49 0.0011 25.4 3.7 37 13-49 71-107 (114)
121 cd00446 GrpE GrpE is the adeni 38.9 1.9E+02 0.004 22.6 7.9 46 70-115 36-81 (137)
122 TIGR03687 pupylate_cterm ubiqu 38.8 45 0.00097 20.1 2.7 18 119-136 3-20 (33)
123 COG0172 SerS Seryl-tRNA synthe 38.6 3.3E+02 0.0071 26.0 9.9 68 17-85 30-97 (429)
124 KOG3192 Mitochondrial J-type c 38.6 2.2E+02 0.0047 23.6 7.6 45 28-72 117-161 (168)
125 PF10593 Z1: Z1 domain; Inter 38.1 62 0.0013 28.1 4.8 10 1-10 172-181 (239)
126 PF06160 EzrA: Septation ring 37.7 4E+02 0.0086 26.0 18.1 44 120-165 380-423 (560)
127 PF12761 End3: Actin cytoskele 37.6 2.2E+02 0.0047 24.2 7.8 31 11-41 91-121 (195)
128 TIGR02338 gimC_beta prefoldin, 37.1 65 0.0014 24.3 4.3 34 13-46 64-97 (110)
129 PRK04778 septation ring format 36.8 4.1E+02 0.0089 25.9 21.3 47 117-165 377-427 (569)
130 PF10475 DUF2450: Protein of u 36.7 3E+02 0.0065 24.3 16.2 71 62-132 107-177 (291)
131 PF06148 COG2: COG (conserved 35.7 33 0.00072 26.7 2.5 40 11-50 64-103 (133)
132 PLN02678 seryl-tRNA synthetase 35.1 4.1E+02 0.0089 25.4 10.2 33 16-48 33-65 (448)
133 PF09726 Macoilin: Transmembra 34.7 5E+02 0.011 26.3 16.7 68 63-144 545-612 (697)
134 PF01452 Rota_NSP4: Rotavirus 34.4 75 0.0016 26.1 4.3 13 3-15 81-93 (173)
135 PRK14127 cell division protein 34.3 85 0.0018 24.1 4.4 30 106-135 13-42 (109)
136 TIGR03185 DNA_S_dndD DNA sulfu 34.0 4.8E+02 0.01 25.8 14.7 113 20-135 388-502 (650)
137 TIGR00293 prefoldin, archaeal 33.5 2.1E+02 0.0046 21.6 9.5 31 62-92 5-35 (126)
138 KOG0933 Structural maintenance 33.5 6.3E+02 0.014 27.1 15.9 30 118-147 359-388 (1174)
139 TIGR01063 gyrA DNA gyrase, A s 33.4 2.1E+02 0.0045 29.4 8.3 95 59-167 351-445 (800)
140 PRK05729 valS valyl-tRNA synth 33.2 1.6E+02 0.0035 30.3 7.6 26 20-45 808-833 (874)
141 PF06476 DUF1090: Protein of u 33.0 2.3E+02 0.005 21.8 7.1 59 11-71 45-109 (115)
142 PHA02562 46 endonuclease subun 32.8 4.4E+02 0.0096 25.1 16.7 126 7-145 290-415 (562)
143 cd04779 HTH_MerR-like_sg4 Heli 32.1 2.5E+02 0.0054 22.0 9.3 53 60-112 78-130 (134)
144 COG1579 Zn-ribbon protein, pos 31.3 3.6E+02 0.0078 23.6 17.7 29 65-93 54-82 (239)
145 TIGR03752 conj_TIGR03752 integ 29.8 5.2E+02 0.011 25.0 10.7 15 71-85 117-131 (472)
146 PF06305 DUF1049: Protein of u 29.7 80 0.0017 21.2 3.4 23 19-41 44-66 (68)
147 PF02388 FemAB: FemAB family; 29.4 4.3E+02 0.0093 24.6 9.2 55 15-85 241-295 (406)
148 COG0172 SerS Seryl-tRNA synthe 29.4 5.1E+02 0.011 24.7 13.8 14 150-163 90-103 (429)
149 PRK14161 heat shock protein Gr 29.3 3.3E+02 0.0072 22.6 10.4 20 98-117 100-119 (178)
150 TIGR01062 parC_Gneg DNA topois 28.9 4.8E+02 0.01 26.7 9.9 45 120-166 425-469 (735)
151 KOG1151 Tousled-like protein k 28.8 1.7E+02 0.0036 28.6 6.2 58 10-68 248-305 (775)
152 cd00890 Prefoldin Prefoldin is 28.4 2.6E+02 0.0055 20.9 6.5 40 61-100 4-43 (129)
153 PRK04863 mukB cell division pr 28.2 8.7E+02 0.019 27.1 22.0 16 148-163 434-449 (1486)
154 CHL00019 atpF ATP synthase CF0 28.2 3.3E+02 0.0072 22.2 15.2 9 101-109 148-156 (184)
155 TIGR01061 parC_Gpos DNA topois 28.2 3.2E+02 0.0069 27.9 8.5 95 59-167 351-445 (738)
156 PF12958 DUF3847: Protein of u 27.8 2.5E+02 0.0054 20.6 8.6 54 19-72 4-57 (86)
157 PRK10547 chemotaxis protein Ch 27.7 2.4E+02 0.0051 28.4 7.5 68 66-133 5-72 (670)
158 PF13166 AAA_13: AAA domain 27.2 6.2E+02 0.013 25.0 14.3 18 20-37 367-384 (712)
159 PF14712 Snapin_Pallidin: Snap 26.5 2.4E+02 0.0053 20.1 9.8 33 9-41 14-46 (92)
160 KOG4648 Uncharacterized conser 26.5 5.5E+02 0.012 24.3 9.0 62 56-117 136-209 (536)
161 cd00632 Prefoldin_beta Prefold 26.4 2.7E+02 0.0058 20.6 6.4 34 13-46 60-93 (105)
162 PRK08032 fliD flagellar cappin 26.3 4.5E+02 0.0097 25.0 8.8 16 26-41 409-424 (462)
163 COG2919 Septum formation initi 26.1 82 0.0018 24.2 3.2 32 14-45 55-86 (117)
164 PRK14156 heat shock protein Gr 26.1 3.8E+02 0.0083 22.3 10.4 18 69-86 77-94 (177)
165 PRK09631 DNA topoisomerase IV 26.0 6.9E+02 0.015 25.1 11.5 48 115-167 400-447 (635)
166 KOG0018 Structural maintenance 25.9 8.5E+02 0.018 26.2 11.4 118 8-134 724-845 (1141)
167 PF08946 Osmo_CC: Osmosensory 25.9 1.8E+02 0.0038 18.9 4.1 25 21-45 10-34 (46)
168 PF08006 DUF1700: Protein of u 25.7 2.2E+02 0.0047 23.1 5.9 41 109-158 10-50 (181)
169 PF08569 Mo25: Mo25-like; Int 25.6 1.7E+02 0.0037 26.8 5.6 49 1-51 1-53 (335)
170 PF10475 DUF2450: Protein of u 25.6 4.7E+02 0.01 23.0 15.5 22 20-41 32-53 (291)
171 TIGR03504 FimV_Cterm FimV C-te 25.5 86 0.0019 19.9 2.7 21 44-64 4-24 (44)
172 PF00231 ATP-synt: ATP synthas 25.3 4.6E+02 0.01 23.0 8.3 52 81-143 2-53 (290)
173 KOG2211 Predicted Golgi transp 25.2 7.5E+02 0.016 25.3 17.4 125 12-144 64-201 (797)
174 KOG0971 Microtubule-associated 25.2 8.5E+02 0.018 25.9 15.6 129 18-161 370-502 (1243)
175 PTZ00233 variable surface prot 24.5 1.3E+02 0.0029 29.2 4.9 55 1-56 1-66 (509)
176 PRK13979 DNA topoisomerase IV 24.3 4.5E+02 0.0097 27.8 8.9 95 59-167 370-464 (957)
177 PRK02224 chromosome segregatio 24.2 7.7E+02 0.017 25.1 19.0 22 117-138 644-665 (880)
178 PRK13423 F0F1 ATP synthase sub 24.2 3.2E+02 0.007 24.1 7.1 49 81-129 3-57 (288)
179 PLN02381 valyl-tRNA synthetase 24.1 2.6E+02 0.0056 29.8 7.3 24 20-43 994-1017(1066)
180 PF04977 DivIC: Septum formati 24.1 2.4E+02 0.0052 19.1 5.6 34 16-49 17-50 (80)
181 KOG2150 CCR4-NOT transcription 23.7 7.3E+02 0.016 24.6 14.5 30 108-137 163-193 (575)
182 PRK03947 prefoldin subunit alp 23.5 3.5E+02 0.0076 20.9 11.6 39 59-97 9-47 (140)
183 PRK13848 conjugal transfer pro 23.5 3.2E+02 0.007 20.5 5.8 51 119-169 10-64 (98)
184 PRK14150 heat shock protein Gr 23.5 4.5E+02 0.0097 22.1 11.2 7 33-39 44-50 (193)
185 TIGR02169 SMC_prok_A chromosom 23.0 8.6E+02 0.019 25.2 18.6 20 17-36 675-694 (1164)
186 PLN02943 aminoacyl-tRNA ligase 22.6 2.9E+02 0.0062 29.0 7.2 42 14-55 887-930 (958)
187 PF06008 Laminin_I: Laminin Do 22.5 5.1E+02 0.011 22.4 17.9 88 24-114 46-141 (264)
188 PF13758 Prefoldin_3: Prefoldi 22.0 3.1E+02 0.0067 20.8 5.5 37 4-40 55-92 (99)
189 PRK14066 exodeoxyribonuclease 22.0 1.6E+02 0.0036 20.9 3.8 43 75-117 6-49 (75)
190 PF07200 Mod_r: Modifier of ru 21.8 3.9E+02 0.0085 20.8 13.8 110 20-147 11-120 (150)
191 PRK14068 exodeoxyribonuclease 21.7 1.8E+02 0.004 20.7 4.1 43 75-117 8-51 (76)
192 PF10359 Fmp27_WPPW: RNA pol I 21.7 4.6E+02 0.01 25.0 8.0 26 22-47 162-187 (475)
193 PF05816 TelA: Toxic anion res 21.6 6E+02 0.013 22.9 12.7 125 1-125 75-220 (333)
194 PRK08026 flagellin; Validated 21.6 7.7E+02 0.017 24.2 10.1 17 149-165 107-123 (529)
195 PF00521 DNA_topoisoIV: DNA gy 21.6 4.2E+02 0.0092 24.8 7.6 93 59-167 317-409 (426)
196 PF08700 Vps51: Vps51/Vps67; 21.3 2.9E+02 0.0064 19.2 9.5 64 25-89 21-84 (87)
197 PF07195 FliD_C: Flagellar hoo 21.3 4.7E+02 0.01 22.2 7.3 13 75-87 223-235 (239)
198 PF06698 DUF1192: Protein of u 21.2 2.8E+02 0.0061 18.9 5.0 19 25-43 23-41 (59)
199 PRK07737 fliD flagellar cappin 20.9 5.5E+02 0.012 24.7 8.4 13 28-40 446-458 (501)
200 PRK14070 exodeoxyribonuclease 20.7 1.3E+02 0.0027 21.2 3.0 38 80-117 2-40 (69)
201 PRK06771 hypothetical protein; 20.6 3.7E+02 0.0081 20.1 6.7 21 44-64 57-77 (93)
202 PF09006 Surfac_D-trimer: Lung 20.3 2.6E+02 0.0056 18.2 4.7 25 18-42 1-25 (46)
203 PRK14475 F0F1 ATP synthase sub 20.2 4.6E+02 0.01 21.0 16.7 10 101-110 134-143 (167)
204 PF10392 COG5: Golgi transport 20.2 4.1E+02 0.009 20.5 13.4 62 20-89 30-91 (132)
205 PF12443 AKNA: AT-hook-contain 20.2 1.5E+02 0.0033 22.7 3.5 32 9-40 45-76 (106)
206 PRK14164 heat shock protein Gr 20.1 5.7E+02 0.012 22.0 8.3 12 73-84 124-135 (218)
No 1
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=100.00 E-value=1e-45 Score=302.88 Aligned_cols=198 Identities=62% Similarity=0.860 Sum_probs=186.1
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 1 MGNLFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLI 80 (225)
Q Consensus 1 M~~lFg~k~~ite~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~ 80 (225)
||++||++++||++|+||+.||.++++|.+|++++++.++..+..||.|++.|+|++|+.+||+|+++|..|.++++|+.
T Consensus 1 MG~lfsK~~~Itd~DrAIL~lK~QRdkl~qyqkR~e~~le~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~ 80 (209)
T KOG2910|consen 1 MGNLFSKKSRITDQDRAILSLKTQRDKLKQYQKRLEKQLEAERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLI 80 (209)
T ss_pred CCccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHH
Q 027325 81 NVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDN 160 (225)
Q Consensus 81 nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~~~DedELe~EL~~ 160 (225)
||++++..||++...+.|+++|+.||.+||++|..|++|+|+++||+.+|.+++++||+++|++.++..|+|+|++||++
T Consensus 81 nlEqmvsdiEft~vqk~V~~gLk~GN~~lkkl~~~~~ideV~rimddt~ea~~YQ~Ein~~L~~~ls~~dEddi~~Elda 160 (209)
T KOG2910|consen 81 NLEQMVSDIEFTQVQKKVMEGLKQGNEALKKLQQEFDIDEVDRIMDDTQEAIEYQDEINAILSGSLSAEDEDDILAELDA 160 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh-hcCCCCCCCCCCcccccCCCCCCCCCCCCCcc
Q 027325 161 LEAQLAV-QEMPEVPTEGPSEEQEKLDLPNVPTKVPVASR 199 (225)
Q Consensus 161 L~~e~~~-~~~~~vp~~~~~~~~~~~~lP~vp~~~p~~~~ 199 (225)
|+.+... .++|+||++. +.......+|++|...|+...
T Consensus 161 Lese~~~e~e~PevPs~e-p~lPek~~~~~~~~k~~~~~~ 199 (209)
T KOG2910|consen 161 LESELEVEAELPEVPSTE-PELPEKEDLEDVPEKEPAASE 199 (209)
T ss_pred HHHHhhhhhhcCCCCCCC-CCcccccccccccccccchhh
Confidence 9998766 5789999874 222334567888888877654
No 2
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=100.00 E-value=2.6e-41 Score=281.96 Aligned_cols=170 Identities=26% Similarity=0.350 Sum_probs=160.4
Q ss_pred CCCCCCCC--CC---------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 027325 1 MGNLFVKK--PK---------ITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQE 69 (225)
Q Consensus 1 M~~lFg~k--~~---------ite~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e 69 (225)
|++|||++ +| .|...+||++|+.+++.|.+|+.+|+.+|+++...||+++++|++.+|+.||||||+||
T Consensus 1 m~~~fgk~~~~~~~~~~~~~~~~~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~LkrKK~~E 80 (191)
T PTZ00446 1 MRFWFGKKKNSSECSDNKKKNNDEIYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRKKLYE 80 (191)
T ss_pred CccccCCCCCCCcchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 78899986 22 34689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CC
Q 027325 70 ELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKL-SA 148 (225)
Q Consensus 70 ~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~-~~ 148 (225)
++|++++++++||++++++||++++|..||.||+.|+++||.+|+.|++|+|+++||+|+|++++++||+++|++++ ++
T Consensus 81 ~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~~~ 160 (191)
T PTZ00446 81 QEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLLNN 160 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999874 57
Q ss_pred CCHHHHHHHHHHHHHHHhhhcC
Q 027325 149 EDEEEILAEFDNLEAQLAVQEM 170 (225)
Q Consensus 149 ~DedELe~EL~~L~~e~~~~~~ 170 (225)
+||+||++||++|+.+..+..+
T Consensus 161 ~DEdELe~ELe~Le~e~l~~~l 182 (191)
T PTZ00446 161 VDDDEIDKELDLLKEQTMEEKL 182 (191)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988766543
No 3
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-41 Score=279.62 Aligned_cols=198 Identities=29% Similarity=0.438 Sum_probs=171.4
Q ss_pred CCCCCCCC--CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 1 MGNLFVKK--PKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQA-ARDLIRQKRKDRALLALKKKRAQEELLKQVDG 77 (225)
Q Consensus 1 M~~lFg~k--~~ite~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~-ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~ 77 (225)
||||||+. ...+..+.+|.+|+.+...|.|+++.|+++|...... |+.|..+ ||+.|+.||||||.||+||.++++
T Consensus 4 ~~~~FG~~k~~~~~t~~eaI~kLrEteemL~KKqe~Le~ki~~e~e~~A~k~~tk-NKR~AlqaLkrKK~~E~qL~qidG 82 (221)
T KOG1656|consen 4 FSRLFGGMKQEAKPTPQEAIQKLRETEEMLEKKQEFLEKKIEQEVENNARKYGTK-NKRMALQALKRKKRYEKQLAQIDG 82 (221)
T ss_pred HHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 68999975 2333467899999999999999999999999988665 7888655 888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCC---CCCHHHH
Q 027325 78 WLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS---AEDEEEI 154 (225)
Q Consensus 78 ~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~---~~DedEL 154 (225)
.+.+|+.+...||+|++|.+|+.+|+.|+++||++|+.||||+|+++||+|.|+.+.++||+++||.+++ ++|||||
T Consensus 83 ~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL 162 (221)
T KOG1656|consen 83 TLSTIEFQREALENANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDEL 162 (221)
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999985 6999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCcccccCCCCCCCCCC-CCC----ccccccccc
Q 027325 155 LAEFDNLEAQLAVQEMPEVPTEGPSEEQEKLDLPNVPTKV-PVA----SRVVADDAE 206 (225)
Q Consensus 155 e~EL~~L~~e~~~~~~~~vp~~~~~~~~~~~~lP~vp~~~-p~~----~~~~~~~~~ 206 (225)
.+||+.|+++..+.++-+++.. .+.||+||+.. |.. +.+.|||.+
T Consensus 163 ~~ELdeLeqeeld~~ll~~~~p-------~v~LP~vPs~~lPa~~~~~~~a~E~d~~ 212 (221)
T KOG1656|consen 163 MAELDELEQEELDKELLDIRAP-------PVPLPDVPSIALPAKPASRPKAEEDDDD 212 (221)
T ss_pred HHHHHHHHHHHHHHHHhccCCC-------CCCCCCCCccccCcccccCCCcchhhhH
Confidence 9999999999888776443322 23688888543 432 444455544
No 4
>PTZ00464 SNF-7-like protein; Provisional
Probab=100.00 E-value=1.9e-39 Score=275.51 Aligned_cols=189 Identities=23% Similarity=0.323 Sum_probs=156.1
Q ss_pred CCCCCCCC---CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHH
Q 027325 1 MGNLFVKK---PKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQ-------KRKDRALLALKKKRAQEE 70 (225)
Q Consensus 1 M~~lFg~k---~~ite~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~-------~~k~~A~~~Lr~KK~~e~ 70 (225)
||||||++ |++| .+.+|..|+.....|.+++.+|+.++. .+|+++++ +.|++|+.|||+||+||+
T Consensus 1 M~rlFG~~k~~p~~t-~~d~~~~l~~r~~~l~kKi~~ld~E~~----~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ 75 (211)
T PTZ00464 1 MNRLFGKKNKTPKPT-LEDASKRIGGRSEVVDARINKIDAELM----KLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQN 75 (211)
T ss_pred CccccCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHH
Confidence 99999975 5677 556779999999999999987776665 45555442 258999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCC---
Q 027325 71 LLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS--- 147 (225)
Q Consensus 71 ~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~--- 147 (225)
+++++.++++||++++++|++++++..||.||+.|+++||++|+.|++|+|+++||+|+|++++++||+++|+++++
T Consensus 76 ql~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~ 155 (211)
T PTZ00464 76 QQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPD 155 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999873
Q ss_pred CCCHHHHHHHHHHHHHHHhhhcCCCCCCCCCCcc-cccCCCCCCCCCCCCC
Q 027325 148 AEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSEE-QEKLDLPNVPTKVPVA 197 (225)
Q Consensus 148 ~~DedELe~EL~~L~~e~~~~~~~~vp~~~~~~~-~~~~~lP~vp~~~p~~ 197 (225)
++||+||++||++|+.++.. ..+|+|+++.+ .+...||++|...|..
T Consensus 156 ~~DEdELe~ELe~Le~e~~~---e~~~~~l~~~~~~p~~~~~~~~~~~~~~ 203 (211)
T PTZ00464 156 DIDEDEMLGELDALDFDMEK---EADASYLADALAVPGTKLPDVPTDEKQQ 203 (211)
T ss_pred CCCHHHHHHHHHHHHHHHhc---cccchhhhccccCCCCCCCCCCCccccc
Confidence 68999999999999998643 23455653211 1112455555554443
No 5
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-31 Score=219.91 Aligned_cols=176 Identities=24% Similarity=0.316 Sum_probs=153.3
Q ss_pred CCCCCCCC---CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHH
Q 027325 1 MGNLFVKK---PKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQK-----RKDRALLALKKKRAQEELL 72 (225)
Q Consensus 1 M~~lFg~k---~~ite~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~-----~k~~A~~~Lr~KK~~e~~L 72 (225)
|+|+||++ .+......+|..+...-+.++++|.+|+.++.+++..+++. +.| -|++|+++||+||+||+|+
T Consensus 1 MnRiFG~~k~k~p~psL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~-R~gpaq~~~KqrAlrVLkQKK~yE~q~ 79 (218)
T KOG1655|consen 1 MNRIFGRGKPKEPPPSLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKT-RPGPAQNALKQRALRVLKQKKMYENQK 79 (218)
T ss_pred CcccccCCCCCCCChhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc-CCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 89999986 23345677888888888899999999998888887766544 333 3679999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCC--CCC
Q 027325 73 KQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS--AED 150 (225)
Q Consensus 73 ~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~--~~D 150 (225)
+.+++|.||+++..+++++.+.+..+|.||+.|++.||+.++.|+||+|+++.|+|.+.++..+||+++|+++|+ ++|
T Consensus 80 d~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~peid 159 (218)
T KOG1655|consen 80 DSLDQQSFNMEQANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTPDID 159 (218)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999886 689
Q ss_pred HHHHHHHHHHHHHHHhhhc---CCCCCCCC
Q 027325 151 EEEILAEFDNLEAQLAVQE---MPEVPTEG 177 (225)
Q Consensus 151 edELe~EL~~L~~e~~~~~---~~~vp~~~ 177 (225)
+++|++||++|.+|..... --..|+|+
T Consensus 160 e~dL~aELdaL~~E~d~~~~~~~~~~psyl 189 (218)
T KOG1655|consen 160 EADLDAELDALGQELDMLEEDENYLMPSYL 189 (218)
T ss_pred HHHHHHHHHHHHhHhhcccccccccchhhh
Confidence 9999999999977643221 12367775
No 6
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=99.96 E-value=3.4e-30 Score=210.39 Aligned_cols=167 Identities=35% Similarity=0.517 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 16 RAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQ 95 (225)
Q Consensus 16 ~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE~a~~n 95 (225)
.+|++|+.+++.|.+++.+|+.+|..+...|++++++|++..|+.|||++|.++++++++.+++.+|++++.+|+++..+
T Consensus 1 eai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~ 80 (171)
T PF03357_consen 1 EAILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSN 80 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccC---CCCCHHHHHHHHHHHHHHHhhhcCCC
Q 027325 96 KAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKL---SAEDEEEILAEFDNLEAQLAVQEMPE 172 (225)
Q Consensus 96 ~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~---~~~DedELe~EL~~L~~e~~~~~~~~ 172 (225)
..|+.+|+.|+++|+++++.|++++|+++|++|.+.++.+++|+++|++.+ +++|++||++||++|..+...+..
T Consensus 81 ~~v~~al~~~~~~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~~~~~~~dd~ele~eL~~l~~e~~~~~~-- 158 (171)
T PF03357_consen 81 QQVVKALKQSSKALKKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDSMDQVDDVDDEELEEELEQLEDEIEEEEE-- 158 (171)
T ss_dssp HHHSSS----SHHHHHHHHSTTSCCHHHHHHHHHHHHHHHTS----------------TTSTTCHHHHHHHCCCTTS---
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHhhhhh--
Confidence 999999999999999999999999999999999999999999999999987 468999999999999988654432
Q ss_pred CCCCCCCcccccCCCCCCCCCC
Q 027325 173 VPTEGPSEEQEKLDLPNVPTKV 194 (225)
Q Consensus 173 vp~~~~~~~~~~~~lP~vp~~~ 194 (225)
+ ...||+||+++
T Consensus 159 -~---------~~~lp~~P~~~ 170 (171)
T PF03357_consen 159 -E---------KQQLPSVPSTE 170 (171)
T ss_dssp -----------SS-SS---HH-
T ss_pred -c---------cccCCcCCCCC
Confidence 1 12688888753
No 7
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=6.7e-27 Score=212.62 Aligned_cols=159 Identities=28% Similarity=0.391 Sum_probs=151.7
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 9 PKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLAD 88 (225)
Q Consensus 9 ~~ite~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~ 88 (225)
.+||+.|.+|++|+.++..|.++++.|+++|+++...++.+++.|.|+.|+++||+||+.|+.++++..++.||++++.+
T Consensus 226 ~~it~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~ 305 (439)
T KOG2911|consen 226 SIITEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQ 305 (439)
T ss_pred cCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHHHHhcccC-C--CCCHHHHHHHHHHHHHH
Q 027325 89 IELASKQKAVFESLKSGTNAIKAIQSE-INLEDVQKLMDDTEEAKAYQDEINAILGEKL-S--AEDEEEILAEFDNLEAQ 164 (225)
Q Consensus 89 iE~a~~n~~vv~alk~~~~aLK~i~~~-~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~-~--~~DedELe~EL~~L~~e 164 (225)
|.+|++|+.|+.||+.|+.|||.+++. .+.|+|+++||++.|.++.++||+++|+.+. + +++|++||+||+.|+.+
T Consensus 306 Id~s~~nkvvl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~~~d~~de~lEkEL~~L~~D 385 (439)
T KOG2911|consen 306 IDNSQTNKVVLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALASYNVNNIDFEDEDLEKELEDLEAD 385 (439)
T ss_pred HHhhcccHHHHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCccchHHHHHHHHHHHhc
Confidence 999999999999999999999999995 5699999999999999999999999999864 3 68999999999999987
Q ss_pred Hhh
Q 027325 165 LAV 167 (225)
Q Consensus 165 ~~~ 167 (225)
...
T Consensus 386 ~~k 388 (439)
T KOG2911|consen 386 EKK 388 (439)
T ss_pred ccc
Confidence 544
No 8
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=7.5e-15 Score=121.63 Aligned_cols=163 Identities=19% Similarity=0.285 Sum_probs=126.4
Q ss_pred CCCCCCCCCCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHHH
Q 027325 1 MGNLFVKKPKITDV-DRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKD----RALLALKKKRAQEELLKQV 75 (225)
Q Consensus 1 M~~lFg~k~~ite~-D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~----~A~~~Lr~KK~~e~~L~~~ 75 (225)
|. +||+++.+-+. -..-..|....+.|+.....|+.+-.++...+|+..++|+-. .|+.+.|.|. ++.+.
T Consensus 1 m~-lFgk~~tp~e~Lr~nqRal~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~----~i~kf 75 (224)
T KOG3230|consen 1 MD-LFGKKKTPAELLRENQRALNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRR----YIKKF 75 (224)
T ss_pred CC-cccCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH----HHHHH
Confidence 55 99998554321 011122333444455555555555555566777888888765 5555665555 55888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-CCHHHH
Q 027325 76 DGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSA-EDEEEI 154 (225)
Q Consensus 76 ~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~~-~DedEL 154 (225)
.+...+|+.+...|...+++..+..+|+.++++|..+|+.|++..+.++|.+|+.+.+.++...++|+..+++ .++++-
T Consensus 76 ~~~kaqiqaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~ed 155 (224)
T KOG3230|consen 76 QNMKAQIQAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDED 155 (224)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988764 456667
Q ss_pred HHHHHHHHHHHhhh
Q 027325 155 LAEFDNLEAQLAVQ 168 (225)
Q Consensus 155 e~EL~~L~~e~~~~ 168 (225)
|+|-+.|..+++++
T Consensus 156 EEEtd~lvnqVLDE 169 (224)
T KOG3230|consen 156 EEETDDLVNQVLDE 169 (224)
T ss_pred hHHHHHHHHHHHHH
Confidence 88999999888775
No 9
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=8.3e-13 Score=110.36 Aligned_cols=173 Identities=18% Similarity=0.229 Sum_probs=147.3
Q ss_pred CCCCCCCCC--hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 4 LFVKKPKIT--DVDRA-ILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLI 80 (225)
Q Consensus 4 lFg~k~~it--e~D~a-I~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~ 80 (225)
+||+.+..+ +.-+- -..|+.....|.+++..|++.-.+....+|+++++|+++.++.+-|.--...+...+++....
T Consensus 3 l~~~~~~pdPKEq~r~wq~kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~sKA 82 (227)
T KOG3229|consen 3 LFGKTPGPDPKEQVREWQSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYESKA 82 (227)
T ss_pred ccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 899864433 44333 357888888999999999998888889999999999988777666666666666799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCC---C--CCHHHHH
Q 027325 81 NVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS---A--EDEEEIL 155 (225)
Q Consensus 81 nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~---~--~DedELe 155 (225)
+|..+.+.+..+-....++..|..++++||.+|.-+.+..+..+|.+|.-.+.++.-|.+++...+. | .++++.+
T Consensus 83 qlnSv~M~l~eqla~~r~~G~lqkStevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eemeEe~d 162 (227)
T KOG3229|consen 83 QLNSVSMQLKEQLATLRVAGSLQKSTEVMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEMEEEAD 162 (227)
T ss_pred HHhhHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987663 2 3667788
Q ss_pred HHHHHHHHHHhhhcCCCCCCC
Q 027325 156 AEFDNLEAQLAVQEMPEVPTE 176 (225)
Q Consensus 156 ~EL~~L~~e~~~~~~~~vp~~ 176 (225)
.|.+.+..++..+.++.+|..
T Consensus 163 eEVdkIL~~it~~~~~~~p~a 183 (227)
T KOG3229|consen 163 EEVDKILTEITGEKAGEAPLA 183 (227)
T ss_pred HHHHHHHHHHhccccccCCcc
Confidence 888999999888888877754
No 10
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=1.4e-11 Score=99.94 Aligned_cols=165 Identities=12% Similarity=0.144 Sum_probs=129.5
Q ss_pred CCCCCCCCCCChHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 2 GNLFVKKPKITDVDRA-ILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLI 80 (225)
Q Consensus 2 ~~lFg~k~~ite~D~a-I~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~ 80 (225)
.|+||++ .+.++.+. -..|+.+-+.|+.....++++-.++...+|+....|+.+.++.+-++-..+.+|..+.++...
T Consensus 1 ~niF~Kk-tvke~~ren~ReLRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s~ 79 (208)
T KOG3231|consen 1 ANIFKKK-TVKEVIRENNRELRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRKQKTRTFAVSS 79 (208)
T ss_pred CCcccCC-CHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 4799988 33333332 235666666666666666666666666778888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC-CHHHHHHHHH
Q 027325 81 NVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAE-DEEEILAEFD 159 (225)
Q Consensus 81 nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~~~-DedELe~EL~ 159 (225)
.+..+..+....+.+..+..||....++|+.+|+.|+++++-.+|.+|+-...+++...++|...++++ |...-++|-+
T Consensus 80 ki~s~~~QnK~M~s~~km~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~anmKMemTeEMiNDTLDdild~sgDeeEs~ 159 (208)
T KOG3231|consen 80 KITSMSTQNKVMNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQKANMKMEMTEEMINDTLDDILDGSGDEEESQ 159 (208)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHhcCCCcHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998877531 2222234444
Q ss_pred HHHHHHhh
Q 027325 160 NLEAQLAV 167 (225)
Q Consensus 160 ~L~~e~~~ 167 (225)
++..++++
T Consensus 160 aiVNqVLD 167 (208)
T KOG3231|consen 160 AIVNQVLD 167 (208)
T ss_pred HHHHHHHH
Confidence 55544444
No 11
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=3.5e-06 Score=69.21 Aligned_cols=147 Identities=20% Similarity=0.280 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 14 VDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALL----ALKKKRAQEELLKQVDGWLINVEQQLADI 89 (225)
Q Consensus 14 ~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~----~Lr~KK~~e~~L~~~~~~l~nLe~~~~~i 89 (225)
....+++||-+-..|++.-.+.++.-..+..++|+++.+|+.+.|+. +.|+|... -++......+..+...+
T Consensus 7 le~~lf~LkF~sk~L~r~a~kceKeEK~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne~----~n~LrlssRvDAVaaRv 82 (203)
T KOG3232|consen 7 LENHLFDLKFTSKQLQRQAKKCEKEEKAEKAKLKKAIQKGNMDVARIYAENAIRKKNEA----VNYLRLSSRVDAVAARV 82 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 45678899999999999999988888888899999999999988775 45555433 34455566788888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-----CCCHHHHHHHHHHHHHH
Q 027325 90 ELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS-----AEDEEEILAEFDNLEAQ 164 (225)
Q Consensus 90 E~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~-----~~DedELe~EL~~L~~e 164 (225)
.+|-+...|...|...-+.|-+..+.|++++|-.+||.|..+-+..+--...+...++ ..+.+++ +.|.++
T Consensus 83 qTavtmr~Vt~sM~gVvK~md~alktmNLekis~~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~~V----d~Lmq~ 158 (203)
T KOG3232|consen 83 QTAVTMRKVTKSMAGVVKSMDSALKTMNLEKISQLMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQGDV----DSLMQQ 158 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHHHHhccCcccccCChhHH----HHHHHH
Confidence 9999999999999999999999999999999999999999999987655555543332 3444443 445555
Q ss_pred Hhhh
Q 027325 165 LAVQ 168 (225)
Q Consensus 165 ~~~~ 168 (225)
+.++
T Consensus 159 vADe 162 (203)
T KOG3232|consen 159 VADE 162 (203)
T ss_pred HHHH
Confidence 5444
No 12
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=98.50 E-value=2.3e-05 Score=66.90 Aligned_cols=148 Identities=17% Similarity=0.212 Sum_probs=110.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q 027325 13 DVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQ-------- 84 (225)
Q Consensus 13 e~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~-------- 84 (225)
....++.........|++++..++..+......|..++..|+-+.|+.+|.+|..++.++..+..++..+..
T Consensus 41 ~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~ 120 (221)
T PF04012_consen 41 KARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQ 120 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666778889999999999999999999999999999999999999999988877666654444
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHH
Q 027325 85 ---QLADIELASKQKAVFESLKSGTNAIKAIQSE---INLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEF 158 (225)
Q Consensus 85 ---~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~---~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~~~DedELe~EL 158 (225)
+-.+|...+....++.+-..+.++-++++.. +++......++.|.+.++..+--.++.....+ +...++.+|
T Consensus 121 l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~ea~a~a~~el~~--~~~~~e~~l 198 (221)
T PF04012_consen 121 LEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEMEARAEASAELAD--SDQDLEAEL 198 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHHHHHHHHhcc--CcccHHHHH
Confidence 4445566777888888888888888887764 45677777777777777776666666654322 222266777
Q ss_pred HHHH
Q 027325 159 DNLE 162 (225)
Q Consensus 159 ~~L~ 162 (225)
+++.
T Consensus 199 ~~~~ 202 (221)
T PF04012_consen 199 EELE 202 (221)
T ss_pred HHhc
Confidence 7665
No 13
>PRK10698 phage shock protein PspA; Provisional
Probab=98.39 E-value=0.0002 Score=61.69 Aligned_cols=150 Identities=13% Similarity=0.185 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH
Q 027325 16 RAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINV-----------EQ 84 (225)
Q Consensus 16 ~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nL-----------e~ 84 (225)
.++..+......++++...++..+......|+.++.+|+-+.|+.+|.+|+.+...+..+..++... ..
T Consensus 45 ~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~ 124 (222)
T PRK10698 45 STSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGE 124 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444556778888888999999999999999999999999999999999988877666555444 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHHHHhccc----CC----C-CCHH
Q 027325 85 QLADIELASKQKAVFESLKSGTNAIKAIQSEIN---LEDVQKLMDDTEEAKAYQDEINAILGEK----LS----A-EDEE 152 (225)
Q Consensus 85 ~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~---id~Ve~lmde~~e~~e~~~EI~e~Ls~~----~~----~-~Ded 152 (225)
+-.+|+.++....++.|=..+..+.++++..++ .+.--.-++.|.+-++..+--.++++.+ ++ . ..++
T Consensus 125 L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea~aea~~~~~~~~l~~e~~~le~~~ 204 (222)
T PRK10698 125 LENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAESHGFGKQKSLDQQFAELKADD 204 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhHhhccCCCCHHHHHHHhhccc
Confidence 445567888899999999999999999888654 3333344455666666655555554321 11 0 1234
Q ss_pred HHHHHHHHHHHHH
Q 027325 153 EILAEFDNLEAQL 165 (225)
Q Consensus 153 ELe~EL~~L~~e~ 165 (225)
++++||.+|-..+
T Consensus 205 ~ve~ELa~LK~~~ 217 (222)
T PRK10698 205 EISEQLAALKAKM 217 (222)
T ss_pred hHHHHHHHHHHHh
Confidence 5777777776654
No 14
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=98.25 E-value=0.00053 Score=58.81 Aligned_cols=127 Identities=14% Similarity=0.157 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q 027325 16 RAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLA-------- 87 (225)
Q Consensus 16 ~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~-------- 87 (225)
.++..+......+++++..+...+......|+.++..|+-+.|+.+|.+|+.++.+...+..++..+...+.
T Consensus 45 ~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~ 124 (219)
T TIGR02977 45 TTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAK 124 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455668888888999999999999999999999999999999999999998777766655554443
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027325 88 ---DIELASKQKAVFESLKSGTNAIKAIQSE---INLEDVQKLMDDTEEAKAYQDEINAIL 142 (225)
Q Consensus 88 ---~iE~a~~n~~vv~alk~~~~aLK~i~~~---~~id~Ve~lmde~~e~~e~~~EI~e~L 142 (225)
+|+.++....++.|=..+..+.+.++.. ++.+.--..++.|.+.++..+--.++.
T Consensus 125 L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~~ea~aea~ 185 (219)
T TIGR02977 125 LQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDELEAQAESY 185 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666656677776666654 455555555555555555544444444
No 15
>PTZ00464 SNF-7-like protein; Provisional
Probab=98.14 E-value=0.00045 Score=59.14 Aligned_cols=98 Identities=12% Similarity=0.104 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH--HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 20 SLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDR--ALLALKKK-RAQEELLKQVDGWLINVEQQLADIELASKQK 96 (225)
Q Consensus 20 ~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~--A~~~Lr~K-K~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~ 96 (225)
.++.++..|..+...|+++|.++......|-+.-.+.+ +....|+| +.+-+..-.+.+++.++.+.+++++...+..
T Consensus 15 t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~i 94 (211)
T PTZ00464 15 TLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTT 94 (211)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777654444333321111110 01111211 1222344455677777888888888777777
Q ss_pred HHHHHHHHHHHHHHHHHccCC
Q 027325 97 AVFESLKSGTNAIKAIQSEIN 117 (225)
Q Consensus 97 ~vv~alk~~~~aLK~i~~~~~ 117 (225)
+....=...-.+|+.-++.+.
T Consensus 95 e~a~~~~~vv~amk~g~kaLK 115 (211)
T PTZ00464 95 ESVKDTKVQVDAMKQAAKTLK 115 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777766666677776666554
No 16
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=97.99 E-value=0.0021 Score=55.57 Aligned_cols=144 Identities=16% Similarity=0.170 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH
Q 027325 19 LSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQ-----------QLA 87 (225)
Q Consensus 19 ~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~-----------~~~ 87 (225)
.++......++++...+...+.+....|+.++..|+-..|+.+|.++..|++++..+..++..+.. +-.
T Consensus 48 A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~ 127 (225)
T COG1842 48 AQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQ 127 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344557777777778888888899999999999999999999999999988777665554444 344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHH
Q 027325 88 DIELASKQKAVFESLKSGTNAIKAIQSE---INLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEA 163 (225)
Q Consensus 88 ~iE~a~~n~~vv~alk~~~~aLK~i~~~---~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~~~DedELe~EL~~L~~ 163 (225)
+|...+..+.++.+=..+.++-.++++. ++.+.--..++.|++-++..+.-.++.+.- .....++++.|+.++..
T Consensus 128 Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~fer~e~kiee~ea~a~~~~el-~~~~~~dl~~e~a~~~~ 205 (225)
T COG1842 128 KIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERMEEKIEEREARAEAAAEL-AEGSGDDLDKEFAQAGA 205 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhHHh-hccCcccHHHHHHHhcc
Confidence 4567778888888888887777777764 455566666667777666666666666531 01133445666666553
No 17
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.0072 Score=50.88 Aligned_cols=150 Identities=21% Similarity=0.323 Sum_probs=103.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 13 DVDRAILSLKTQRRKLAQYQQQLDVVIEAEK---------QAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVE 83 (225)
Q Consensus 13 e~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~---------~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe 83 (225)
..++++..|...+..|+.+.++|-..|.+.- -.||.++ +-+++ .+.+.....++.+....++
T Consensus 20 al~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLv------RtR~~---i~kf~~~kaqiqaVSl~iQ 90 (224)
T KOG3230|consen 20 ALNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLV------RTRRY---IKKFQNMKAQIQAVSLRIQ 90 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH------HHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4567888899999999999998888886543 2233333 22333 2334456678888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHcc-CCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHH
Q 027325 84 QQLADIELASKQKAVFESLKSGTNAIK--AIQSE-INLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDN 160 (225)
Q Consensus 84 ~~~~~iE~a~~n~~vv~alk~~~~aLK--~i~~~-~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~~~DedELe~EL~~ 160 (225)
++..+-..++.-+-+.+||..-|+.|. ++.+- +.+++--.+||--.|.+. +-|+++|+ ++.||+|-++=..+
T Consensus 91 tlkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~--daIDdal~---~~edEEEtd~lvnq 165 (224)
T KOG3230|consen 91 TLKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMD--DAIDDALG---DDEDEEETDDLVNQ 165 (224)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhc---ccchhHHHHHHHHH
Confidence 999999999999999999999998876 44443 357787888876666443 34556655 25677777776677
Q ss_pred HHHHHhh---hcCCCCCCC
Q 027325 161 LEAQLAV---QEMPEVPTE 176 (225)
Q Consensus 161 L~~e~~~---~~~~~vp~~ 176 (225)
...|+.. .++.+.|+.
T Consensus 166 VLDEiGvdl~~qL~~~P~~ 184 (224)
T KOG3230|consen 166 VLDEIGVDLASQLSSLPSA 184 (224)
T ss_pred HHHHHcccHHHHhccCccc
Confidence 7766642 345666663
No 18
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.0042 Score=52.24 Aligned_cols=135 Identities=16% Similarity=0.167 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 20 SLKTQRRKLAQYQQQLDVVIEAEKQAARDL---IRQKRKDRALLALKKKRAQ-EELLKQVDGWLINVEQQLADIELASKQ 95 (225)
Q Consensus 20 ~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~---~k~~~k~~A~~~Lr~KK~~-e~~L~~~~~~l~nLe~~~~~iE~a~~n 95 (225)
.|..+++.+.++...++.+|.++.....+| +++-+-.-|+.+||+|.+- -+|.-...+|..+|.++.+.++.|...
T Consensus 16 sL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t 95 (218)
T KOG1655|consen 16 SLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFT 95 (218)
T ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 577889999999999999999999888766 3332334689999988763 477788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHccCC----HHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCCHHHHH
Q 027325 96 KAVFESLKSGTNAIKAIQSEIN----LEDVQKLMDDTEEAKAYQDEINAILGEKLS-AEDEEEIL 155 (225)
Q Consensus 96 ~~vv~alk~~~~aLK~i~~~~~----id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~-~~DedELe 155 (225)
.+-++--...-.|||.-++.|. -=+|++ +++++++|++.=+..+=|...++ ..+.-+|+
T Consensus 96 ~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~-IedlQDem~Dlmd~a~EiQE~Lgr~y~~peid 159 (218)
T KOG1655|consen 96 AESLKDTQATVAAMKDTNKEMKKQYKKVNIDK-IEDLQDEMEDLMDQADEIQEVLGRNYNTPDID 159 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCHHH-HHHHHHHHHHHHHHHHHHHHHHhhccCCCCcC
Confidence 9888888888889998888765 334544 35566666665555555555565 45665543
No 19
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=97.23 E-value=0.00058 Score=55.29 Aligned_cols=153 Identities=20% Similarity=0.324 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 14 VDRAILSLKTQRRKLAQYQQQLDVVIEAEKQ-----AARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLAD 88 (225)
Q Consensus 14 ~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~-----~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~ 88 (225)
...++..|...+..|+++++.+..++..+.. .|+.|++ ..+.+=+....+..++.++...+.+|+.....
T Consensus 6 Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk-----~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~ 80 (171)
T PF03357_consen 6 LKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLK-----RKKRLEKQLEKLLNQLSNLESVLLQIETAQSN 80 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777888888888887777765543 2333332 12222223333445556667777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHHHHhc--ccCC-CCCHHHHHHHHHHHHH
Q 027325 89 IELASKQKAVFESLKSGTNAIKAIQSEIN--LEDVQKLMDDTEEAKAYQDEINAILG--EKLS-AEDEEEILAEFDNLEA 163 (225)
Q Consensus 89 iE~a~~n~~vv~alk~~~~aLK~i~~~~~--id~Ve~lmde~~e~~e~~~EI~e~Ls--~~~~-~~DedELe~EL~~L~~ 163 (225)
......=.....+|+..++.+. + ..+. ++++.+.++.+.+ .++-+++.++ ...+ +.=+.||++=+.....
T Consensus 81 ~~v~~al~~~~~~Lk~~~~~i~-~-~~v~~~~d~~~e~~e~~~e---i~~~l~~~~~~~~~~dd~ele~eL~~l~~e~~~ 155 (171)
T PF03357_consen 81 QQVVKALKQSSKALKKINKQIN-L-DKVEKLMDDFQEEMEDQDE---ISEALSDSMDQVDDVDDEELEEELEQLEDEIEE 155 (171)
T ss_dssp HHHSSS----SHHHHHHHHSTT-S-CCHHHHHHHHHHHHHHHTS-------------------TTSTTCHHHHHHHCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHhhh-h-hhHHHHHHHHHHHHHHHHH---HHHHHHccccCCCCCCHHHHHHHHHHHHHHHhh
Confidence 7766666677777776665553 1 1121 3444444444443 3444444441 3333 2223344433333333
Q ss_pred HH-hhhcCCCCCCC
Q 027325 164 QL-AVQEMPEVPTE 176 (225)
Q Consensus 164 e~-~~~~~~~vp~~ 176 (225)
+. ....+|.||+.
T Consensus 156 ~~~~~~~lp~~P~~ 169 (171)
T PF03357_consen 156 EEEEKQQLPSVPST 169 (171)
T ss_dssp TS--SS-SS---HH
T ss_pred hhhccccCCcCCCC
Confidence 22 24567777753
No 20
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.17 Score=42.97 Aligned_cols=136 Identities=16% Similarity=0.278 Sum_probs=82.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHccCC-HHHH
Q 027325 45 AARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIK--AIQSEIN-LEDV 121 (225)
Q Consensus 45 ~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK--~i~~~~~-id~V 121 (225)
.|.+|++. =+.+=+.--.+..-+.++..|+..|++.-...|...+-..-.+|||..-..|- +++.-|+ |.+-
T Consensus 62 ~AlqaLkr-----KK~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQ 136 (221)
T KOG1656|consen 62 MALQALKR-----KKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQ 136 (221)
T ss_pred HHHHHHHH-----HHHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHH
Confidence 44555542 23344455567788888888888999888888888888888888888877765 4444443 4444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc--ccCCCCCHHHHHHHHH--HHHHHHhhh-----cCCCCCCCCCCcccccCCCCCCCC
Q 027325 122 QKLMDDTEEAKAYQDEINAILG--EKLSAEDEEEILAEFD--NLEAQLAVQ-----EMPEVPTEGPSEEQEKLDLPNVPT 192 (225)
Q Consensus 122 e~lmde~~e~~e~~~EI~e~Ls--~~~~~~DedELe~EL~--~L~~e~~~~-----~~~~vp~~~~~~~~~~~~lP~vp~ 192 (225)
..++++| ++-|+.=++ ..+++.+=..=.+||+ .|..++... .+|+||+. .||+.|.
T Consensus 137 qe~a~eI------seAiS~Pvg~~a~~DEDEL~~ELdeLeqeeld~~ll~~~~p~v~LP~vPs~---------~lPa~~~ 201 (221)
T KOG1656|consen 137 QEVAEEI------SEAISAPVGFGADFDEDELMAELDELEQEELDKELLDIRAPPVPLPDVPSI---------ALPAKPA 201 (221)
T ss_pred HHHHHHH------HHHHhCccccccccCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcc---------ccCcccc
Confidence 4444444 445666554 3466432222234444 445555443 25666654 6888876
Q ss_pred CCCCCccc
Q 027325 193 KVPVASRV 200 (225)
Q Consensus 193 ~~p~~~~~ 200 (225)
+.|.....
T Consensus 202 ~~~~a~E~ 209 (221)
T KOG1656|consen 202 SRPKAEED 209 (221)
T ss_pred cCCCcchh
Confidence 66655443
No 21
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=95.53 E-value=1.3 Score=37.46 Aligned_cols=45 Identities=13% Similarity=-0.017 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 65 KRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAI 109 (225)
Q Consensus 65 KK~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aL 109 (225)
.-.+..++.++..++++|+......+....-..-..||+..++-|
T Consensus 83 l~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~~k~~ 127 (191)
T PTZ00446 83 IENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNNEI 127 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334445555555555555555555555555555555555555444
No 22
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=95.17 E-value=1.8 Score=36.98 Aligned_cols=61 Identities=8% Similarity=0.066 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHHHHH
Q 027325 74 QVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEIN-LEDVQKLMDDTEEAKAY 134 (225)
Q Consensus 74 ~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~-id~Ve~lmde~~e~~e~ 134 (225)
++..+...|+..+..+.+.......--+|.....-+......++ ++.|.++++.+.-+...
T Consensus 46 ~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a~~~mnel~~i~ri~~~~et~~~~ 107 (204)
T COG5491 46 KLRKARSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQFLA 107 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333333344444444444444444 55666666555544433
No 23
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=94.02 E-value=3.3 Score=34.99 Aligned_cols=101 Identities=15% Similarity=0.144 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--HHHHH---HHHHHHHHHHHHHHHHHH
Q 027325 18 ILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQE--ELLKQ---VDGWLINVEQQLADIELA 92 (225)
Q Consensus 18 I~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e--~~L~~---~~~~l~nLe~~~~~iE~a 92 (225)
|-.-...+-.|..+.++|.+=..+.. + +-...+..|+.|+|..+--. -.|-+ ...-+.+..+.+..||+.
T Consensus 11 Itd~DrAIL~lK~QRdkl~qyqkR~e----~-~le~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlEqm 85 (209)
T KOG2910|consen 11 ITDQDRAILSLKTQRDKLKQYQKRLE----K-QLEAERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLEQM 85 (209)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666555543332211 1 12345778999998433211 11222 134566777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHH
Q 027325 93 SKQKAVFESLKSGTNAIKAIQSEINLEDVQKLM 125 (225)
Q Consensus 93 ~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lm 125 (225)
.++.++...-+..-.-||.=|..+. +++..|
T Consensus 86 vsdiEft~vqk~V~~gLk~GN~~lk--kl~~~~ 116 (209)
T KOG2910|consen 86 VSDIEFTQVQKKVMEGLKQGNEALK--KLQQEF 116 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhc
Confidence 7777777666666666665544443 555544
No 24
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=92.34 E-value=3.7 Score=33.21 Aligned_cols=27 Identities=33% Similarity=0.298 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027325 117 NLEDVQKLMDDTEEAKAYQDEINAILG 143 (225)
Q Consensus 117 ~id~Ve~lmde~~e~~e~~~EI~e~Ls 143 (225)
.++.++++.|.+.|..+..+..-+.++
T Consensus 87 kv~~~E~L~d~v~eLkeel~~el~~l~ 113 (146)
T PF05852_consen 87 KVEDLEKLTDRVEELKEELEFELERLQ 113 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 488899999888886655544444443
No 25
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.72 E-value=11 Score=35.64 Aligned_cols=125 Identities=23% Similarity=0.193 Sum_probs=72.6
Q ss_pred CCChHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHH--HHHHHHHHHHHHHHHH
Q 027325 10 KITDVDRA-ILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALK---KKRA--QEELLKQVDGWLINVE 83 (225)
Q Consensus 10 ~ite~D~a-I~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr---~KK~--~e~~L~~~~~~l~nLe 83 (225)
.++..|-. |-.+...+-.|.+-+.+|.++|+.+.+.++++- ..|+.++| ++-. |-+.+-.+..-+....
T Consensus 219 ~i~~~~~~~it~~D~~V~~L~~~~~~L~kqie~L~qeie~~~-----~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~ 293 (439)
T KOG2911|consen 219 QIPSQDASIITEIDGSVADLIQARAKLAKQIEFLEQEIEKSK-----EKLRQALKEGKKQIAITYLRARKLLEKDLERKV 293 (439)
T ss_pred cCCcccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHH
Confidence 34444444 678888899999999999999999988888773 44555555 3222 3334444555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHH---HHHHHHHHHHHHHHHhcc
Q 027325 84 QQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMD---DTEEAKAYQDEINAILGE 144 (225)
Q Consensus 84 ~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmd---e~~e~~e~~~EI~e~Ls~ 144 (225)
..+.++++..++......=+..-.|+|. +.+-+..++- -....-+..++|.+.+.+
T Consensus 294 ~~l~~l~~vl~~Id~s~~nkvvl~Ayks-----Gs~alK~il~~~~s~ekVed~Ldev~et~d~ 352 (439)
T KOG2911|consen 294 SSLNNLETVLSQIDNSQTNKVVLQAYKS-----GSEALKAILAQGGSTEKVEDVLDEVNETLDR 352 (439)
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHH-----hHHHHHHHHhccCChhhHHHHHHHHHHHHhh
Confidence 6666666666665555444444444443 2233334443 111122345666666654
No 26
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.13 E-value=9 Score=32.81 Aligned_cols=145 Identities=19% Similarity=0.283 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 20 SLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELL---KQVDGWLINVEQQLADIELASKQK 96 (225)
Q Consensus 20 ~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L---~~~~~~l~nLe~~~~~iE~a~~n~ 96 (225)
+|..++..|+...++.++.|. ..||+.-...-+-.|+.+.+.+|.+-... .++.+-...|..++..+-.+.+-.
T Consensus 29 ~ldrqir~iqree~kv~~~iK---~aAKknD~~t~~iLAKEiv~srk~v~Rly~sKAqlnSv~M~l~eqla~~r~~G~lq 105 (227)
T KOG3229|consen 29 QLDRQIRDIQREEEKVQKSIK---QAAKKNDKDTCRILAKEIVQSRKAVKRLYESKAQLNSVSMQLKEQLATLRVAGSLQ 105 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHhhHH
Confidence 344444444444444444443 23444433344556666666666554433 455666677777776665554443
Q ss_pred HHHHHHHHHH---------HHHHHHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHh
Q 027325 97 AVFESLKSGT---------NAIKAIQSEI-NLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLA 166 (225)
Q Consensus 97 ~vv~alk~~~---------~aLK~i~~~~-~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~~~DedELe~EL~~L~~e~~ 166 (225)
.....|+..+ .+|..+.++| ..-=|+.+.|+.-+..+..+|+.+- -++|++.=|-++..+..
T Consensus 106 kStevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eemeEe--------~deEVdkIL~~it~~~~ 177 (227)
T KOG3229|consen 106 KSTEVMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEMEEE--------ADEEVDKILTEITGEKA 177 (227)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHH--------HHHHHHHHHHHHhcccc
Confidence 3334444333 3455555554 3445667777777766666664433 34567777777766643
Q ss_pred hhcCCCCCCC
Q 027325 167 VQEMPEVPTE 176 (225)
Q Consensus 167 ~~~~~~vp~~ 176 (225)
...|.+|..
T Consensus 178 -~~~p~a~~~ 186 (227)
T KOG3229|consen 178 -GEAPLAVTA 186 (227)
T ss_pred -ccCCcchHH
Confidence 344666654
No 27
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.71 E-value=7.5 Score=32.24 Aligned_cols=152 Identities=13% Similarity=0.224 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 027325 16 RAILSLKTQRRKLAQYQQQLDVVIEAEKQAA-RDLIRQKRKDRALLALKKKRAQEELL---KQVDGWLINVEQQLADIEL 91 (225)
Q Consensus 16 ~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~a-k~~~k~~~k~~A~~~Lr~KK~~e~~L---~~~~~~l~nLe~~~~~iE~ 91 (225)
.+-..|..-+..++++.+.|+..|.+.-... ..++ +-.|+++..-||.-.... .++.+...+=.-+-..+..
T Consensus 22 kt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAc----r~LAKQLV~lRkQKtrt~a~s~ki~s~~~QnK~M~s~~km 97 (208)
T KOG3231|consen 22 KTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDAC----RVLAKQLVHLRKQKTRTFAVSSKITSMSTQNKVMNSQMKM 97 (208)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHH----HHHHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 3445677888899999999999998654333 2223 556666555444433322 2333222222223333333
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCCHHHHHHHHHHHHHHHhhh
Q 027325 92 ASKQKAVFESLKSGTNAIK--AIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS-AEDEEEILAEFDNLEAQLAVQ 168 (225)
Q Consensus 92 a~~n~~vv~alk~~~~aLK--~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~-~~DedELe~EL~~L~~e~~~~ 168 (225)
+..---++++|+.-|+.|. ++...|--=.....--++-| +.|++.|..-++ .-|++|-.+=.++...|+.-+
T Consensus 98 ~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~anmKMemTe-----EMiNDTLDdild~sgDeeEs~aiVNqVLDEIGIE 172 (208)
T KOG3231|consen 98 AGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQKANMKMEMTE-----EMINDTLDDILDGSGDEEESQAIVNQVLDEIGIE 172 (208)
T ss_pred HHHhchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhhHH-----HHHHhhHHHHhcCCCcHHHHHHHHHHHHHHhhhh
Confidence 3333344455555454432 11111100001111111111 223444443333 236666666666666666543
Q ss_pred ---cCCCCCCC
Q 027325 169 ---EMPEVPTE 176 (225)
Q Consensus 169 ---~~~~vp~~ 176 (225)
.+..+|+.
T Consensus 173 isgKma~~P~a 183 (208)
T KOG3231|consen 173 ISGKMAKAPSA 183 (208)
T ss_pred hcchhccCCcc
Confidence 45666764
No 28
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=90.13 E-value=11 Score=32.19 Aligned_cols=137 Identities=12% Similarity=0.069 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 21 LKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFE 100 (225)
Q Consensus 21 Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~ 100 (225)
+..+..++....+...+.........+.... ..+..|..+++-++ +..+++..+..|+.+...+........+..
T Consensus 5 ~~~~~~k~~~~~k~~~~~~~~~~n~~~~~~~-~~~~l~~~~~~~~~----~~srL~~~~sRLqs~~~~~~e~~~m~~v~~ 79 (204)
T COG5491 5 LERQAKKLVRELKQEAKKGQVLLNEIAKKAP-NRRRLAEELYKLRK----ARSRLDASISRLQSLDTMLFEKVVMRQVSG 79 (204)
T ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHhccchh-HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444444444444433333332221 22334555555444 458899999999999999988888999999
Q ss_pred HHHHHHHHHHHHHccCC----HHHHHHHHHHHHHHHHHHHHHHHHhcccCC---CCCHHHHHHHHHHHHHHH
Q 027325 101 SLKSGTNAIKAIQSEIN----LEDVQKLMDDTEEAKAYQDEINAILGEKLS---AEDEEEILAEFDNLEAQL 165 (225)
Q Consensus 101 alk~~~~aLK~i~~~~~----id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~---~~DedELe~EL~~L~~e~ 165 (225)
.|..++..|..+..-.. ++.+...|+-.+- ..+.+.+.+....+ ..+.+++++++..+..|.
T Consensus 80 ~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~---~le~m~e~~~v~~~~~v~~~l~~lde~v~~v~pEi 148 (204)
T COG5491 80 DMAKAAMYMNELESIRRIMQLFETQFLALELVQL---RLETMDELMDVVVGDPVLEDLEELDELVNKVLPEI 148 (204)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhccCccchhhhhHHHHHHHHHhhchhh
Confidence 99999999886655333 2222222222222 33455555555444 124444555555444443
No 29
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=89.79 E-value=4.6 Score=39.38 Aligned_cols=105 Identities=16% Similarity=0.273 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-----HHHHHHHHHHHHHH
Q 027325 57 RALLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEIN-----LEDVQKLMDDTEEA 131 (225)
Q Consensus 57 ~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~-----id~Ve~lmde~~e~ 131 (225)
.=+.+|-.+..|-.-+..+..++.+++......+....+-+.+.| ...+.++...++ +++|=.+..+++..
T Consensus 152 ~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A----~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~ 227 (569)
T PRK04778 152 LRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEA----REILDQLEEELAALEQIMEEIPELLKELQTE 227 (569)
T ss_pred HHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556566667777777777777766666555443333 233333322221 22333333333332
Q ss_pred H-HHHHHHHH----HhcccCCCCCHHHHHHHHHHHHHHHh
Q 027325 132 K-AYQDEINA----ILGEKLSAEDEEEILAEFDNLEAQLA 166 (225)
Q Consensus 132 ~-e~~~EI~e----~Ls~~~~~~DedELe~EL~~L~~e~~ 166 (225)
. +..+++.+ |...+| .++..+++.++..|..++.
T Consensus 228 ~P~ql~el~~gy~~m~~~gy-~~~~~~i~~~i~~l~~~i~ 266 (569)
T PRK04778 228 LPDQLQELKAGYRELVEEGY-HLDHLDIEKEIQDLKEQID 266 (569)
T ss_pred hhHHHHHHHHHHHHHHHcCC-CCCCCChHHHHHHHHHHHH
Confidence 2 23333333 333444 3455567777777766553
No 30
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=88.66 E-value=2.5 Score=29.03 Aligned_cols=44 Identities=23% Similarity=0.194 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 027325 33 QQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVD 76 (225)
Q Consensus 33 ~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~ 76 (225)
+.|+.+...+...|.++-..|+...|+.++|--|.|+..+....
T Consensus 2 ~~L~~R~~~yk~Aa~~AK~~gd~~kAr~~~R~~K~~~~~I~~~~ 45 (59)
T smart00685 2 ALLQQRQEQYKQAALQAKRAGDEEKARRHLRIAKQFDDAIKAAR 45 (59)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhHHHHHHHHH
Confidence 45777888888888888889999999999999999988776543
No 31
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=88.49 E-value=26 Score=34.23 Aligned_cols=38 Identities=13% Similarity=0.201 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 58 ALLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQ 95 (225)
Q Consensus 58 A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE~a~~n 95 (225)
=+.+|..+..|-..+..+..++.+++......+....+
T Consensus 149 rk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~ 186 (560)
T PF06160_consen 149 RKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTEN 186 (560)
T ss_pred HHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 33455555566666666667777777766666655554
No 32
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=87.02 E-value=7.3 Score=27.44 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 027325 26 RKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQV 75 (225)
Q Consensus 26 ~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~ 75 (225)
..|..-...+..++..+......+...++...|+.++++-+++.+.++.+
T Consensus 27 ~~L~~l~~~~~~~~~~~~~~l~~~f~~~d~~~A~~~~~kLky~~kl~~~i 76 (78)
T PF07743_consen 27 AELEELKKEIEERIKELIKELAEAFDAKDWEEAKEALRKLKYLQKLLEEI 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh
Confidence 45666667777777778888888888899999999999999998877665
No 33
>PRK14162 heat shock protein GrpE; Provisional
Probab=86.49 E-value=13 Score=31.53 Aligned_cols=104 Identities=13% Similarity=0.093 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 14 VDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALK-KKRAQEELLKQVDGWLINVEQQLADIELA 92 (225)
Q Consensus 14 ~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr-~KK~~e~~L~~~~~~l~nLe~~~~~iE~a 92 (225)
.+..+..|+..+..|.+++..+..+.-+.......+- |+.++..-. ++...++.+..+...++||+-.+......
T Consensus 37 ~~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~r----kR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~ 112 (194)
T PRK14162 37 KQNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQ----NRYAKERAQLIKYESQSLAKDVLPAMDNLERALAVKADD 112 (194)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccc
Confidence 3445556666666666666666555543333332221 222332222 22234455566666666666665443322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCHHHH
Q 027325 93 SKQKAVFESLKSGTNAIKAIQSEINLEDV 121 (225)
Q Consensus 93 ~~n~~vv~alk~~~~aLK~i~~~~~id~V 121 (225)
.....++.+++..-+.|.++....++..|
T Consensus 113 ~~~~~l~~Gvemi~k~l~~vL~~~GV~~I 141 (194)
T PRK14162 113 EAAKQLKKGVQMTLDHLVKALKDHGVTEI 141 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHCCCEEe
Confidence 33345666666666666666665554443
No 34
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=84.32 E-value=35 Score=31.72 Aligned_cols=41 Identities=7% Similarity=0.172 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Q 027325 93 SKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKA 133 (225)
Q Consensus 93 ~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e 133 (225)
+.-.+++..|......+.....-.+++.|..+...+.....
T Consensus 131 r~Y~e~a~~L~av~~L~~~F~~yksi~~I~~L~~~i~~l~~ 171 (383)
T PF04100_consen 131 RQYKEIASLLQAVKELLEHFKPYKSIPQIAELSKRIDQLQN 171 (383)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHH
Confidence 33467777777777777666666678888877777766444
No 35
>PRK14143 heat shock protein GrpE; Provisional
Probab=81.42 E-value=35 Score=29.82 Aligned_cols=100 Identities=10% Similarity=0.082 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 027325 15 DRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALK-KKRAQEELLKQVDGWLINVEQQLADIEL-A 92 (225)
Q Consensus 15 D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr-~KK~~e~~L~~~~~~l~nLe~~~~~iE~-a 92 (225)
+..+..|+..+..|.++++.+..+.-++......+- |+..+..-. ++...++.+..+.-.+.||+-.+..+.. .
T Consensus 66 ~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~R----KR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~~~ 141 (238)
T PRK14143 66 AARLAQLEQELESLKQELEELNSQYMRIAADFDNFR----KRTSREQEDLRLQLKCNTLSEILPVVDNFERARQQLKPEG 141 (238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccccc
Confidence 334556666666666665555554433333322222 222221111 2233445555555555555555443211 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCH
Q 027325 93 SKQKAVFESLKSGTNAIKAIQSEINL 118 (225)
Q Consensus 93 ~~n~~vv~alk~~~~aLK~i~~~~~i 118 (225)
.....+..++...-+.|.++.+..++
T Consensus 142 ~~~~~l~~Gve~i~k~l~~~L~k~GV 167 (238)
T PRK14143 142 EEAQALHRSYQGLYKQLVDVLKRLGV 167 (238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 11123344444444444444444443
No 36
>PRK14146 heat shock protein GrpE; Provisional
Probab=81.36 E-value=25 Score=30.24 Aligned_cols=54 Identities=15% Similarity=0.070 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHH
Q 027325 68 QEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDV 121 (225)
Q Consensus 68 ~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~V 121 (225)
.++.+..+...++||+-.+...........++.+++..-+.|.++.+..++..|
T Consensus 103 ~e~~~~~lLpv~DnlerAl~~~~~~~~~~~l~~Gv~mi~k~l~~~L~k~Gv~~i 156 (215)
T PRK14146 103 VKSLVSGFLNPIDNLERVGATQNQSEELKPFVEGVKMILKEFYSVLEKSNVIRF 156 (215)
T ss_pred HHHHHHHHhhHHhHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHCcCeee
Confidence 445555555666666655443222222244556666666666666555554433
No 37
>PRK14140 heat shock protein GrpE; Provisional
Probab=80.75 E-value=32 Score=29.04 Aligned_cols=18 Identities=28% Similarity=0.211 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027325 69 EELLKQVDGWLINVEQQL 86 (225)
Q Consensus 69 e~~L~~~~~~l~nLe~~~ 86 (225)
++.+..+...++||+-.+
T Consensus 87 ~~~~~~LLpvlDnLerAl 104 (191)
T PRK14140 87 QSLASDLLPALDNFERAL 104 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 38
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=79.76 E-value=15 Score=31.92 Aligned_cols=94 Identities=17% Similarity=0.174 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 14 VDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLADIELAS 93 (225)
Q Consensus 14 ~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE~a~ 93 (225)
-..++.=|..+++.|..+++.++..++.+...-++- +.+. .--.+.-.++..+++..-.+.+|+.++-.++
T Consensus 120 k~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~~~kKk-k~~~-----~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~--- 190 (233)
T PF04065_consen 120 KEEARDWLKDSIDELNRQIEQLEAEIESLSSQKKKK-KKDS-----TKQERIEELESRIERHKFHIEKLELLLRLLD--- 190 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ccCc-----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 445566788889999999999999988655432211 1111 1112223344444555555555665554443
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Q 027325 94 KQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQ 135 (225)
Q Consensus 94 ~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~ 135 (225)
|..++++.|++|-+++.--++..
T Consensus 191 -------------------N~~l~~e~V~~ikedieyYve~n 213 (233)
T PF04065_consen 191 -------------------NDELDPEQVEDIKEDIEYYVESN 213 (233)
T ss_pred -------------------cCCCCHHHHHHHHHHHHHHHHcC
Confidence 44689999999999988877754
No 39
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=79.68 E-value=77 Score=34.07 Aligned_cols=132 Identities=14% Similarity=0.178 Sum_probs=72.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 11 ITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLADIE 90 (225)
Q Consensus 11 ite~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE 90 (225)
+|-.+.|...-+.....|.......+.-+.... .||... ..-++.|..+|-+-+.+..+.+... ..|+.++.+|.
T Consensus 1407 ~t~A~~A~~~A~~~~~~l~~~~ae~eq~~~~v~-ea~~~a-seA~~~Aq~~~~~a~as~~q~~~s~---~el~~Li~~v~ 1481 (1758)
T KOG0994|consen 1407 VTRAGGALLMAGDADTQLRSKLAEAEQTLSMVR-EAKLSA-SEAQQSAQRALEQANASRSQMEESN---RELRNLIQQVR 1481 (1758)
T ss_pred hcccchHHHHhhhHHHHHHHHHHHHHHHHHHHH-HHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 444445554444444444444444444433221 122111 1124567777766666554444444 44444444444
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 027325 91 LASKQ----KAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAED 150 (225)
Q Consensus 91 ~a~~n----~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~~~D 150 (225)
+..++ -..++. .++++|.. -=..+.+.|..++++|++.++....|+.+|+++.+|++
T Consensus 1482 ~Flt~~~adp~si~~--vA~~vL~l-~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ 1542 (1758)
T KOG0994|consen 1482 DFLTQPDADPDSIEE--VAEEVLAL-ELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIA 1542 (1758)
T ss_pred HHhcCCCCCHHHHHH--HHHHHHhc-cCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHH
Confidence 43332 222222 23444432 12457999999999999999999999999998766543
No 40
>PRK14160 heat shock protein GrpE; Provisional
Probab=77.59 E-value=45 Score=28.62 Aligned_cols=30 Identities=30% Similarity=0.345 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 17 AILSLKTQRRKLAQYQQQLDVVIEAEKQAA 46 (225)
Q Consensus 17 aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~a 46 (225)
.+..|+.....|...+..|+.++..+....
T Consensus 55 ~~~~l~~e~~~l~~~l~~l~~e~~elkd~~ 84 (211)
T PRK14160 55 KIEELKDENNKLKEENKKLENELEALKDRL 84 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666554444
No 41
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=76.75 E-value=18 Score=26.02 Aligned_cols=63 Identities=16% Similarity=0.140 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 027325 68 QEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEK 145 (225)
Q Consensus 68 ~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~ 145 (225)
+++.|+.+......|+.+...|+.+..++..| +.. ++.-..++|-.-.-+..++-+.++|..+
T Consensus 3 L~kEL~~Lr~IN~~ie~~~~~L~~a~~~~~~v-------------~~~--~~~t~~LLd~w~~IlSQte~~~~Ll~dp 65 (78)
T PF08651_consen 3 LEKELEQLRKINPVIEGLIETLRSAKSNMNRV-------------QET--VESTNTLLDKWIRILSQTEHTQRLLLDP 65 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHH--HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45556666665666666666555555544433 332 2355666777777777888889999765
No 42
>PRK14148 heat shock protein GrpE; Provisional
Probab=75.10 E-value=50 Score=27.95 Aligned_cols=49 Identities=16% Similarity=0.116 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 027325 69 EELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEIN 117 (225)
Q Consensus 69 e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~ 117 (225)
++.+..+...+++|+..+...........++.+++..-+.|.++....+
T Consensus 90 ~~~~~~LLpV~DnlerAl~~~~~~~~~~~l~~Gv~mi~k~l~~vL~k~G 138 (195)
T PRK14148 90 EKFAKELLPVIDSIEQALKHEVKLEEAIAMKEGIELTAKMLVDILKKNG 138 (195)
T ss_pred HHHHHHHhhHHhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3444444444455544443322111122344444444444444444433
No 43
>PHA03161 hypothetical protein; Provisional
Probab=73.94 E-value=47 Score=27.03 Aligned_cols=58 Identities=21% Similarity=0.220 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCC--CCCHHHHHHHHHHHHHHHhhhcCCCCCC
Q 027325 118 LEDVQKLMDDTEEAKAYQDEINAILGEKLS--AEDEEEILAEFDNLEAQLAVQEMPEVPT 175 (225)
Q Consensus 118 id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~--~~DedELe~EL~~L~~e~~~~~~~~vp~ 175 (225)
++.++++.|.+.|..+....=-+.+...-+ ...+...+.+++....++..+.+|.+|+
T Consensus 88 l~~~E~L~drv~eLkeel~~ELe~l~~~q~~~~~~~~~~~~~~~dtI~~WRLE~lPrcP~ 147 (150)
T PHA03161 88 LSAAEDLQDKILELKEDIHFEIEALNHGQPSSQEEENSSENSIPDTIMQWRIEALPRVPS 147 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCccCchhhHHHHHHHhhCCCCCC
Confidence 566666666666654433322233322111 1122223334444455555555555554
No 44
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=73.80 E-value=28 Score=24.43 Aligned_cols=64 Identities=20% Similarity=0.224 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 20 SLKTQRRKLAQYQQQLDVVIEAEKQAARDL-IRQKRKDRALLALKKKRAQEELLKQVDGWLINVE 83 (225)
Q Consensus 20 ~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~-~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe 83 (225)
+|+..++.|.-..+.|....+.....+-.. +.-|+...+..+||-++.|......+++++..|.
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~alrlal~ys~r~~e~~~~llal~ 66 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATALRLALKYSERCKEAYEVLLALV 66 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356667777777777777776666555444 4457778888899999999988888888877653
No 45
>PRK14163 heat shock protein GrpE; Provisional
Probab=73.26 E-value=60 Score=27.95 Aligned_cols=42 Identities=14% Similarity=0.257 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHH
Q 027325 81 NVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQ 122 (225)
Q Consensus 81 nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve 122 (225)
.|-.++..++.|..+..++.+++..-+.|.++.+..++..|+
T Consensus 95 ~LLpVlDnLerAl~~~~l~~Gv~mi~k~l~~~L~k~Gv~~I~ 136 (214)
T PRK14163 95 ELLPVLDDVGRAREHGELVGGFKSVAESLETTVAKLGLQQFG 136 (214)
T ss_pred HHhhhHhHHHHHHhchhHHHHHHHHHHHHHHHHHHCCCEEeC
Confidence 333444444444444457777777777777777766655443
No 46
>PRK14158 heat shock protein GrpE; Provisional
Probab=73.20 E-value=56 Score=27.63 Aligned_cols=104 Identities=12% Similarity=0.028 Sum_probs=49.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 11 ITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALK-KKRAQEELLKQVDGWLINVEQQLADI 89 (225)
Q Consensus 11 ite~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr-~KK~~e~~L~~~~~~l~nLe~~~~~i 89 (225)
.+..+..+..|+..+..|..++..+..+.-+.....-.+- |+..+..-. ++-..++.+..+...++||+..+...
T Consensus 35 ~~~~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~R----kR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~ 110 (194)
T PRK14158 35 PVAAADRIKELEEALAAKEAEAAANWDKYLRERADLENYR----KRVQKEKEELLKYGNESLILEILPAVDNMERALDHA 110 (194)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhcc
Confidence 4455566777777777777777666655544333333222 122221111 22233444455555555555544332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCHH
Q 027325 90 ELASKQKAVFESLKSGTNAIKAIQSEINLE 119 (225)
Q Consensus 90 E~a~~n~~vv~alk~~~~aLK~i~~~~~id 119 (225)
.. .....++.+++..-+.|.++....++.
T Consensus 111 ~~-~~~~~i~~Gv~mi~k~l~~vLek~Gv~ 139 (194)
T PRK14158 111 DE-ESMSAIIEGIRMTLSMLLSTLKKFGVT 139 (194)
T ss_pred Cc-chHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 11 112345555555555555555544443
No 47
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=73.03 E-value=35 Score=25.22 Aligned_cols=39 Identities=13% Similarity=0.265 Sum_probs=20.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 12 TDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLI 50 (225)
Q Consensus 12 te~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~ 50 (225)
.....++..|......+..........|...-.....++
T Consensus 17 ~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L 55 (127)
T smart00502 17 AELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNAL 55 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555444444444
No 48
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=72.18 E-value=55 Score=27.06 Aligned_cols=56 Identities=9% Similarity=0.083 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 28 LAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVE 83 (225)
Q Consensus 28 L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe 83 (225)
|..-...+...+..+.....+++..++...|+.++++-+++.+..+.+......|.
T Consensus 116 L~~l~~~v~~~~~~~~~~l~~~~~~~d~~~A~~~~~rL~y~~kl~~ei~~~~~~l~ 171 (173)
T PRK01773 116 LTAFSKEIKQEQQAILTELSTALNSQQWQQASQINDRLRFIKKLIIEIERVEEKLF 171 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444556666666667777777788889999999999999888877776655543
No 49
>PRK14159 heat shock protein GrpE; Provisional
Probab=71.43 E-value=59 Score=27.08 Aligned_cols=56 Identities=11% Similarity=0.014 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHH
Q 027325 67 AQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQ 122 (225)
Q Consensus 67 ~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve 122 (225)
..++.+..+.-.+.||+-.+...........++.+++..-+.|.++.+..++..|+
T Consensus 71 a~~~~~~~LLpV~DnlerAl~~~~~~~~~~~l~~Gv~mi~k~l~~vL~k~Gv~~I~ 126 (176)
T PRK14159 71 ANESFAKDLLDVLDALEAAVNVECHDEISLKIKEGVQNTLDLFLKKLEKHGVALIK 126 (176)
T ss_pred HHHHHHHHHhhHHhHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHCcCEecC
Confidence 34455556666666666665443322233456777777777777777766655443
No 50
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=71.41 E-value=49 Score=26.20 Aligned_cols=66 Identities=18% Similarity=0.159 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 25 RRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLADIE 90 (225)
Q Consensus 25 ~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE 90 (225)
...|...+..++.++..+.-.+++.++...+..+-.+-.-+..+++...++..+..+|...+..++
T Consensus 22 ~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv~ 87 (131)
T PF11068_consen 22 LQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQVQ 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666777777777777777777776654443323333344455555555555555555554443
No 51
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=71.03 E-value=57 Score=26.79 Aligned_cols=55 Identities=13% Similarity=0.185 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 28 LAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINV 82 (225)
Q Consensus 28 L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nL 82 (225)
|..-...+..++..+.....+++..++...|+.++++-+++.+....+......|
T Consensus 115 l~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~~Lky~~kl~~ei~~~~~~l 169 (171)
T PRK05014 115 LESFIKRVKKMFKTRLQQMVEQLDNEAWDAAADTVRKLKFLDKLRSEVEQLEEKL 169 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444555555555666777777888999999999999988777776655444
No 52
>PRK14154 heat shock protein GrpE; Provisional
Probab=70.14 E-value=70 Score=27.41 Aligned_cols=19 Identities=11% Similarity=0.064 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027325 69 EELLKQVDGWLINVEQQLA 87 (225)
Q Consensus 69 e~~L~~~~~~l~nLe~~~~ 87 (225)
++.+..+...++||+-.+.
T Consensus 102 e~~~~~LLpVlDnLeRAL~ 120 (208)
T PRK14154 102 KQLITDLLPVADSLIHGLE 120 (208)
T ss_pred HHHHHHHhhHHhHHHHHHh
Confidence 3334444444555554443
No 53
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=70.09 E-value=35 Score=27.64 Aligned_cols=53 Identities=11% Similarity=0.139 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 27 KLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWL 79 (225)
Q Consensus 27 ~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l 79 (225)
.|..-...+..++..+.....++...++...|+.++++-+++.+....+....
T Consensus 101 ~L~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kLky~~kl~~~i~~~~ 153 (157)
T TIGR00714 101 RLESFIKRVKKMFQTRHQLLVEQLDNQTWAAAADYTRKLRFLDKLRSSAEQLE 153 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666777777777777788888889999999999999988777766544
No 54
>PRK14155 heat shock protein GrpE; Provisional
Probab=69.61 E-value=71 Score=27.31 Aligned_cols=55 Identities=11% Similarity=0.075 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHccCCHHHH
Q 027325 67 AQEELLKQVDGWLINVEQQLADIELA---SKQKAVFESLKSGTNAIKAIQSEINLEDV 121 (225)
Q Consensus 67 ~~e~~L~~~~~~l~nLe~~~~~iE~a---~~n~~vv~alk~~~~aLK~i~~~~~id~V 121 (225)
..++.+..+...+.||+..+..+... .....++.+++..-+.|.++....++..|
T Consensus 61 a~~~~~~~LLpV~DnLerAl~~~~~~~~~~~~~~i~~Gvemi~k~~~~~L~k~GV~~I 118 (208)
T PRK14155 61 AIQKFARDLLGAADNLGRATAASPKDSADPAVKNFIIGVEMTEKELLGAFERNGLKKI 118 (208)
T ss_pred HHHHHHHHHhhHHhhHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHCCCcee
Confidence 34555566666666666665544211 11234555666655555555555554443
No 55
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=67.75 E-value=63 Score=25.98 Aligned_cols=69 Identities=13% Similarity=0.136 Sum_probs=47.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 027325 45 AARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQS 114 (225)
Q Consensus 45 ~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~ 114 (225)
.+++++.+-.+-.=.+++ +|-.|.+.+.+++..+...-++...+....+.+.+..-|..-+.-|+.+..
T Consensus 77 ~g~~LV~k~sk~~r~n~~-kk~~y~~Ki~~le~~l~~f~~v~~q~~~~~D~~~l~~~~~e~~~kl~~i~~ 145 (147)
T PF05659_consen 77 KGKELVEKCSKVRRWNLY-KKPRYARKIEELEESLRRFIQVDLQLHQLRDIKELLAKMSEMNTKLDDITR 145 (147)
T ss_pred HHHHHHHHhccccHHHHH-hhHhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444333333333344 444578888999999999888888888888888888888777777776653
No 56
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=65.74 E-value=59 Score=26.91 Aligned_cols=55 Identities=13% Similarity=0.087 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 28 LAQYQQQLDVVIEAEKQAARDLIRQ-KRKDRALLALKKKRAQEELLKQVDGWLINV 82 (225)
Q Consensus 28 L~k~~~~Le~~i~~~~~~ak~~~k~-~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nL 82 (225)
|..-...+..++..+...+.+++.. ++...|..++++-+++.+....+......|
T Consensus 119 L~~l~~e~~~~~~~~~~~l~~~~~~~~d~~~A~~~~~kL~y~~kl~~ei~~~~~~l 174 (176)
T PRK03578 119 LDALLAELRDERRERYAELGALLDSRGDDQAAAEAVRQLMFIEKLAQEIGAAIERL 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566677777777777777766 678899999999999988877776555444
No 57
>PRK14153 heat shock protein GrpE; Provisional
Probab=65.59 E-value=83 Score=26.62 Aligned_cols=13 Identities=15% Similarity=-0.077 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 027325 73 KQVDGWLINVEQQ 85 (225)
Q Consensus 73 ~~~~~~l~nLe~~ 85 (225)
..+.-.+++|+-.
T Consensus 87 ~~LLpv~DnLerA 99 (194)
T PRK14153 87 LDLLEVTDNFERA 99 (194)
T ss_pred HHHhhHHhHHHHH
Confidence 3333334444433
No 58
>PRK14149 heat shock protein GrpE; Provisional
Probab=65.36 E-value=83 Score=26.58 Aligned_cols=54 Identities=11% Similarity=0.122 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHH
Q 027325 68 QEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDV 121 (225)
Q Consensus 68 ~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~V 121 (225)
.++.+..+...+.+|+-.+...........++.+++..-+.|.++.+..++..|
T Consensus 85 ~~~~~~~LLpVlDnLerAl~~~~~~~~~~~l~~Gv~mi~k~l~~vL~k~GV~~I 138 (191)
T PRK14149 85 YEKIALDLLPVIDALLGALKSAAEVDKESALTKGLELTMEKLHEVLARHGIEGI 138 (191)
T ss_pred HHHHHHHHhhHHhHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHCCCEEe
Confidence 334445555555666555543322222244666666666666666665554443
No 59
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=65.16 E-value=1.4e+02 Score=29.14 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 027325 77 GWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQS 114 (225)
Q Consensus 77 ~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~ 114 (225)
.....+..+...++....-..+++.+..-...++.++.
T Consensus 80 ~a~~e~~~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~ 117 (593)
T PF06248_consen 80 DAAEELQELKRELEENEQLLEVLEQLQEIDELLEEVEE 117 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444445555555555555554443
No 60
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=64.16 E-value=12 Score=30.14 Aligned_cols=46 Identities=20% Similarity=0.227 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 027325 72 LKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEIN 117 (225)
Q Consensus 72 L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~ 117 (225)
+..+...+.+|+..+...........+..++....+.|..+....+
T Consensus 64 ~~~ll~v~D~l~~a~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~G 109 (165)
T PF01025_consen 64 LKDLLPVLDNLERALEAAKSNEEEESLLEGLEMILKQLEDILEKNG 109 (165)
T ss_dssp HHHHHHHHHHHHHHHCC-SHHCTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3444444444444443332111223445555555555555554444
No 61
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=62.61 E-value=61 Score=24.04 Aligned_cols=38 Identities=21% Similarity=0.268 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027325 16 RAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQK 53 (225)
Q Consensus 16 ~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~ 53 (225)
..|..|...+..+....+.|..+.......+..+.+.|
T Consensus 29 d~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~ 66 (108)
T PF02403_consen 29 DEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG 66 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc
Confidence 34667777777777777777777766655555555544
No 62
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=62.33 E-value=92 Score=26.01 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 18 ILSLKTQRRKLAQYQQQLDVVIEAEKQAARDL 49 (225)
Q Consensus 18 I~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~ 49 (225)
...++.....|.+.+..+..+|..+...+-.+
T Consensus 64 ~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 64 KQKRQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666655555444
No 63
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=61.51 E-value=71 Score=28.38 Aligned_cols=68 Identities=16% Similarity=0.102 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 15 DRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINV 82 (225)
Q Consensus 15 D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nL 82 (225)
..+...|...+..|+..+++|+++-++.....+.....-....|+++=-=|.|+-..|.-+...-.+|
T Consensus 3 ~~~L~eL~qrk~~Lq~eIe~LerR~~ri~~EmrtsFaG~Sq~lA~RVqGFkdYLvGsLQDLa~saEqL 70 (283)
T PF11285_consen 3 QEALKELEQRKQALQIEIEQLERRRERIEKEMRTSFAGQSQDLAIRVQGFKDYLVGSLQDLAQSAEQL 70 (283)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Confidence 45778899999999999999999999988888877654456677776666666655555444444443
No 64
>PF14282 FlxA: FlxA-like protein
Probab=60.25 E-value=58 Score=24.60 Aligned_cols=27 Identities=11% Similarity=0.223 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 63 KKKRAQEELLKQVDGWLINVEQQLADI 89 (225)
Q Consensus 63 r~KK~~e~~L~~~~~~l~nLe~~~~~i 89 (225)
.+++.+..++..+..++..|+.....-
T Consensus 51 ~q~q~Lq~QI~~LqaQI~qlq~q~~~~ 77 (106)
T PF14282_consen 51 QQIQLLQAQIQQLQAQIAQLQSQQAEQ 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777778888888877776665443
No 65
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=59.95 E-value=70 Score=23.82 Aligned_cols=93 Identities=13% Similarity=0.114 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027325 65 KRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGE 144 (225)
Q Consensus 65 KK~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~ 144 (225)
-..|++++..+..++..|+..+.-.+.+......+ ..+..+.+.+-.-+=.-.++++...+.+.++..+.--.-+..
T Consensus 8 ~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l---~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~ 84 (105)
T cd00632 8 LQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKL---ADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLER 84 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666665555554443333333 244555555544322234555555555555554444444433
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q 027325 145 KLSAEDEEEILAEFDNLEAQL 165 (225)
Q Consensus 145 ~~~~~DedELe~EL~~L~~e~ 165 (225)
.-+++..++..+..++
T Consensus 85 -----~~~~l~~~~~elk~~l 100 (105)
T cd00632 85 -----QEEDLQEKLKELQEKI 100 (105)
T ss_pred -----HHHHHHHHHHHHHHHH
Confidence 3355666666666554
No 66
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=59.93 E-value=51 Score=22.26 Aligned_cols=40 Identities=10% Similarity=0.341 Sum_probs=27.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 11 ITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLI 50 (225)
Q Consensus 11 ite~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~ 50 (225)
+++...-+-++...+..+.+++..|...++......|..+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll 41 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDLL 41 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777788888888887777776666655443
No 67
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=59.78 E-value=65 Score=23.44 Aligned_cols=61 Identities=10% Similarity=0.083 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHccCCHH
Q 027325 59 LLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFE-SLKSGTNAIKAIQSEINLE 119 (225)
Q Consensus 59 ~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~-alk~~~~aLK~i~~~~~id 119 (225)
-.+.|.+++....+++-...+..|.+.-.++........-+. .++.+.+.++++.+.--.|
T Consensus 8 ~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D 69 (92)
T PF03908_consen 8 ESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTD 69 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346677788888888888888888888888888777655444 7888999999887754333
No 68
>PRK14145 heat shock protein GrpE; Provisional
Probab=59.61 E-value=1.1e+02 Score=25.96 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 027325 68 QEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEIN 117 (225)
Q Consensus 68 ~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~ 117 (225)
.++.+..+.-.++||+-.+.. ......++.+++..-+-|.++....+
T Consensus 94 ~e~~~~~LLpV~DnLerAl~~---~~~~~~l~~Gv~mi~k~l~~vL~k~G 140 (196)
T PRK14145 94 KEQVILELLPVMDNFERALAS---SGDYNSLKEGIELIYRQFKKILDKFG 140 (196)
T ss_pred HHHHHHHHHhHHhHHHHHHhc---cccHHHHHHHHHHHHHHHHHHHHHCC
Confidence 444445555555555554432 11122344444444444444444444
No 69
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=58.75 E-value=1.3e+02 Score=28.33 Aligned_cols=74 Identities=16% Similarity=0.222 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 16 RAILSLKTQRRKLAQYQQQLDVVIEAEKQAARD-LIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLADI 89 (225)
Q Consensus 16 ~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~-~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~i 89 (225)
..+..|+..+..+..++.+|+..+.......+. .+....+.....+.+.++.+...+..+...+..|+..+...
T Consensus 334 ~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 334 EKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444444444444332221110 01112334555666666677777777777766666655443
No 70
>PRK09343 prefoldin subunit beta; Provisional
Probab=58.73 E-value=12 Score=29.13 Aligned_cols=37 Identities=11% Similarity=0.183 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027325 17 AILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQK 53 (225)
Q Consensus 17 aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~ 53 (225)
.+--+...+..|+++.+.|+.++.+.....++++..+
T Consensus 79 r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 79 RKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333344444455555555555555555555554443
No 71
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=58.17 E-value=46 Score=23.70 Aligned_cols=48 Identities=23% Similarity=0.444 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCC-CHHHHHHHHHHHHHHHh
Q 027325 119 EDVQKLMDDTEEAKAYQDEINAILGEKLSAE-DEEEILAEFDNLEAQLA 166 (225)
Q Consensus 119 d~Ve~lmde~~e~~e~~~EI~e~Ls~~~~~~-DedELe~EL~~L~~e~~ 166 (225)
+.|+.+-..|.......++|...-...+... ++.++..|++.|..++.
T Consensus 7 ~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~ 55 (103)
T PF00804_consen 7 DEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIK 55 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHH
Confidence 3455555555555555556665555544322 34588899999987753
No 72
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=58.07 E-value=1.1e+02 Score=25.64 Aligned_cols=57 Identities=21% Similarity=0.269 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccCCHHHH
Q 027325 65 KRAQEELLKQVDGWLINVEQQLADIELASKQ-KAVFESLKSGTNAIKAIQSEINLEDV 121 (225)
Q Consensus 65 KK~~e~~L~~~~~~l~nLe~~~~~iE~a~~n-~~vv~alk~~~~aLK~i~~~~~id~V 121 (225)
+..+++.+..+...++||+..+..+...... +.++.++....+.|.++....++..|
T Consensus 82 k~a~e~~~~dlLpviDnlerAl~~~~~~~d~~~~l~~Gvem~~~~l~~~L~k~Gv~~i 139 (193)
T COG0576 82 KYAIEKFAKDLLPVIDNLERALEAAEDDKDPEKALLEGVEMTLDQLLDALEKLGVEEI 139 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHCCCEEe
Confidence 5566777778888888888877765544222 35666666666666666665554433
No 73
>PRK11020 hypothetical protein; Provisional
Probab=58.04 E-value=87 Score=24.34 Aligned_cols=51 Identities=10% Similarity=0.012 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 28 LAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGW 78 (225)
Q Consensus 28 L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~ 78 (225)
+...++.|..+++.++.+.-.+...|+...-..+.+.+-.+++.+.++-++
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~ 53 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEV 53 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666777766666666777788777777777777777777666543
No 74
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=57.82 E-value=1.1e+02 Score=25.52 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=28.0
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 8 KPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEK 43 (225)
Q Consensus 8 k~~ite~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~ 43 (225)
.+++.+.|.-....+...+.|+.+.+.+.+......
T Consensus 16 ~~~~~e~D~~F~~~~~~~~~le~~Lk~l~~~~~~l~ 51 (236)
T PF09325_consen 16 SPKMKEPDEWFEEIKDYVDKLEEQLKKLYKSLERLV 51 (236)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477788888888888888888888888777665443
No 75
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=57.79 E-value=58 Score=22.26 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027325 24 QRRKLAQYQQQLDVVIEA 41 (225)
Q Consensus 24 ~~~~L~k~~~~Le~~i~~ 41 (225)
.+.+|.+.+.+++..|..
T Consensus 5 E~~rL~Kel~kl~~~i~~ 22 (66)
T PF10458_consen 5 EIERLEKELEKLEKEIER 22 (66)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455555444443
No 76
>PRK10869 recombination and repair protein; Provisional
Probab=57.78 E-value=1.9e+02 Score=28.21 Aligned_cols=10 Identities=30% Similarity=0.594 Sum_probs=5.3
Q ss_pred HHHHHHHHHH
Q 027325 153 EILAEFDNLE 162 (225)
Q Consensus 153 ELe~EL~~L~ 162 (225)
++..||+.|.
T Consensus 328 ~l~~eL~~L~ 337 (553)
T PRK10869 328 QLLEEQQQLD 337 (553)
T ss_pred HHHHHHHHhh
Confidence 4455665543
No 77
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=57.60 E-value=1.2e+02 Score=26.42 Aligned_cols=28 Identities=7% Similarity=0.159 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 027325 118 LEDVQKLMDDTEEAKAYQDEINAILGEK 145 (225)
Q Consensus 118 id~Ve~lmde~~e~~e~~~EI~e~Ls~~ 145 (225)
++.++..++...-++...+-|-.+|...
T Consensus 165 ~~~l~~~ierhk~Hi~kLE~lLR~L~N~ 192 (233)
T PF04065_consen 165 IEELESRIERHKFHIEKLELLLRLLDND 192 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5667777777777777777777777653
No 78
>PRK14144 heat shock protein GrpE; Provisional
Probab=56.97 E-value=1.2e+02 Score=25.73 Aligned_cols=50 Identities=14% Similarity=0.137 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH
Q 027325 68 QEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINL 118 (225)
Q Consensus 68 ~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~i 118 (225)
.++.+..+...+.||+-.+...... .+..++.++...-+.|.++....++
T Consensus 94 ~~~~~~~LLpV~DnLerAl~~~~~~-~~~~i~~Gv~mi~k~l~~~L~k~GV 143 (199)
T PRK14144 94 VEKLISALLPVVDSLEQALQLADKN-SDPSMHEGLELTMKLFLDALQKFDV 143 (199)
T ss_pred HHHHHHHHhhHHhHHHHHHHccccc-chhHHHHHHHHHHHHHHHHHHHCCC
Confidence 3444455555555555554432211 1234455555555555555444443
No 79
>PRK14147 heat shock protein GrpE; Provisional
Probab=55.82 E-value=1.2e+02 Score=25.12 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHH
Q 027325 68 QEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLE 119 (225)
Q Consensus 68 ~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id 119 (225)
.++.+..+...+.||+..+..... ....++.++...-+-|.++.+..++.
T Consensus 67 ~~~~~~~lLpv~DnlerAl~~~~~--~~~~l~~Gv~mi~k~l~~~L~~~Gv~ 116 (172)
T PRK14147 67 NEKLLGELLPVFDSLDAGLTAAGT--EPSPLRDGLELTYKQLLKVAADNGLT 116 (172)
T ss_pred HHHHHHHHhhhhhHHHHHHhcccc--hHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 344445555555555555433211 11334555555555555555544433
No 80
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=55.73 E-value=92 Score=25.14 Aligned_cols=38 Identities=24% Similarity=0.231 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 13 DVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLI 50 (225)
Q Consensus 13 e~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~ 50 (225)
+.|.||-.|+..++.|.+.+..++..|.+....+....
T Consensus 91 ~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~ 128 (145)
T COG1730 91 SADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLE 128 (145)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999888888876665554443
No 81
>PRK14151 heat shock protein GrpE; Provisional
Probab=55.35 E-value=1.2e+02 Score=25.15 Aligned_cols=18 Identities=17% Similarity=0.147 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027325 69 EELLKQVDGWLINVEQQL 86 (225)
Q Consensus 69 e~~L~~~~~~l~nLe~~~ 86 (225)
++.+..+...++||+-.+
T Consensus 70 ~~~~~~LLpv~DnlerAl 87 (176)
T PRK14151 70 EKFAGDLLPVVDSLERGL 87 (176)
T ss_pred HHHHHHHhhHHhHHHHHH
Confidence 344444444444544444
No 82
>PRK11637 AmiB activator; Provisional
Probab=54.96 E-value=1.8e+02 Score=27.10 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027325 95 QKAVFESLKSGTNAIKAI 112 (225)
Q Consensus 95 n~~vv~alk~~~~aLK~i 112 (225)
+..+++.+...-..|...
T Consensus 168 d~~~l~~l~~~~~~L~~~ 185 (428)
T PRK11637 168 RQETIAELKQTREELAAQ 185 (428)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444433
No 83
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=54.96 E-value=77 Score=22.77 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 027325 67 AQEELLKQVDGWLINVEQQLADIELASKQKAVFE-SLKSGTNAIK 110 (225)
Q Consensus 67 ~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~-alk~~~~aLK 110 (225)
.++...+.+.+...+++.+..+++++..=...+- -|.++...-+
T Consensus 16 ~ie~~~~~L~~a~~~~~~v~~~~~~t~~LLd~w~~IlSQte~~~~ 60 (78)
T PF08651_consen 16 VIEGLIETLRSAKSNMNRVQETVESTNTLLDKWIRILSQTEHTQR 60 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666777777777766665555544 3344443333
No 84
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=54.16 E-value=1.3e+02 Score=25.34 Aligned_cols=31 Identities=3% Similarity=0.110 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027325 24 QRRKLAQYQQQLDVVIEAEKQAARDLIRQKR 54 (225)
Q Consensus 24 ~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~ 54 (225)
++..++.-+..|+.++++....++.++..|+
T Consensus 3 ~~~~~E~~~~~le~~l~kl~K~~~~~~d~g~ 33 (200)
T cd07637 3 TIDEVETDVVEIEAKLDKLVKLCSGMIEAGK 33 (200)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777777766553
No 85
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=53.92 E-value=1.5e+02 Score=25.74 Aligned_cols=75 Identities=13% Similarity=0.201 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 17 AILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLADIELAS 93 (225)
Q Consensus 17 aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE~a~ 93 (225)
+|.+|+.....|++....|-..++...... .++..= +..--.++..|..+...|-.+..-+..|+.++...+..+
T Consensus 2 ~i~~ir~K~~~lek~k~~i~~e~~~~e~ee-~~L~e~-~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er 76 (230)
T PF10146_consen 2 KIKEIRNKTLELEKLKNEILQEVESLENEE-KCLEEY-RKEMEELLQERMAHVEELRQINQDINTLENIIKQAESER 76 (230)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888777776655554 233221 223335666777777888888888888887776665443
No 86
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=53.03 E-value=86 Score=22.99 Aligned_cols=39 Identities=10% Similarity=0.192 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027325 16 RAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKR 54 (225)
Q Consensus 16 ~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~ 54 (225)
.-+..|..+.+.|......|+.+-+.+....+.++..++
T Consensus 26 ~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnr 64 (83)
T PF03670_consen 26 EEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNR 64 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 346788999999999999999999999999988886654
No 87
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=51.77 E-value=1.6e+02 Score=27.71 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 17 AILSLKTQRRKLAQYQQQLDVVIEAEKQAARDL 49 (225)
Q Consensus 17 aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~ 49 (225)
.|+.|......|..+++.|..+.......++..
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~ 61 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQA 61 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777787888888888887777666555543
No 88
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=50.78 E-value=90 Score=27.00 Aligned_cols=38 Identities=24% Similarity=0.320 Sum_probs=21.7
Q ss_pred CCCCCCCC--CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 1 MGNLFVKK--PKITDVDRAILSLKTQRRKLAQYQQQLDVVIEA 41 (225)
Q Consensus 1 M~~lFg~k--~~ite~D~aI~~Lk~~~~~L~k~~~~Le~~i~~ 41 (225)
|||+|.++ .+.+ ....+|..++..++..+++++...++
T Consensus 1 mG~~f~K~~~~~~~---~~L~rle~qi~q~~~~~~~~qs~l~~ 40 (251)
T COG5415 1 MGSRFDKDFVTKYT---ADLSRLESQIHQLDVALKKSQSILSQ 40 (251)
T ss_pred CCccccccccccch---hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999887 3333 23445555555555555555554443
No 89
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=50.09 E-value=30 Score=27.07 Aligned_cols=37 Identities=11% Similarity=0.222 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 13 DVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDL 49 (225)
Q Consensus 13 e~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~ 49 (225)
+.+..+-.|...+..|+++.++++.+++++...+..+
T Consensus 74 eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 74 ELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444444333
No 90
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=49.98 E-value=1.5e+02 Score=24.77 Aligned_cols=121 Identities=12% Similarity=0.147 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 027325 19 LSLKTQRRKLAQYQQQLDVVIEAEK-----QAARDLIRQKRK--DRALLALKKKRAQEELLKQVD----GWLINVEQQLA 87 (225)
Q Consensus 19 ~~Lk~~~~~L~k~~~~Le~~i~~~~-----~~ak~~~k~~~k--~~A~~~Lr~KK~~e~~L~~~~----~~l~nLe~~~~ 87 (225)
..++..++.+...+..++.+..... ..|+.++..... ..+-.+-.....+..+.+++. .....|..+..
T Consensus 54 ~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~ 133 (221)
T PF04012_consen 54 KRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKS 133 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666667777776665443 455666543321 222223333333333333333 33344445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHHHHHHHHH
Q 027325 88 DIELASKQKAVFESLKSGTNAIKAIQSEI---NLEDVQKLMDDTEEAKAYQDEIN 139 (225)
Q Consensus 88 ~iE~a~~n~~vv~alk~~~~aLK~i~~~~---~id~Ve~lmde~~e~~e~~~EI~ 139 (225)
..+.......+..+-...+.++..+...= .++.++.=.+.+.-..+-..++.
T Consensus 134 k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~ea~a~a~~el~ 188 (221)
T PF04012_consen 134 KREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEMEARAEASAELA 188 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55566666677777777777776665322 24555555555554444444444
No 91
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=49.56 E-value=48 Score=23.91 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 59 LLALKKKRAQEELLKQVDGWLINVEQQLAD 88 (225)
Q Consensus 59 ~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~ 88 (225)
+.++.+|+.++..|..+..++..+|+....
T Consensus 5 ~~l~~~k~~Le~~L~~lE~qIy~~Et~YL~ 34 (80)
T PF09340_consen 5 KELLQKKKKLEKDLAALEKQIYDKETSYLE 34 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999998888888887765
No 92
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=49.55 E-value=1.3e+02 Score=24.60 Aligned_cols=50 Identities=12% Similarity=0.249 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 027325 27 KLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVD 76 (225)
Q Consensus 27 ~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~ 76 (225)
.|..-...++.++..+......+...++...|+.++++-+++.+....+.
T Consensus 110 ~L~~l~~~~~~~~~~~~~~l~~~f~~~d~~~A~~~~~~L~y~~kl~~~i~ 159 (166)
T PRK01356 110 DLEKIKNKYELMYKNEIDSLKQAFEEQNLSDATIKTSKLKYIGTLLNKLQ 159 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666777777778878888999999999999987776554
No 93
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=48.52 E-value=1.1e+02 Score=22.90 Aligned_cols=91 Identities=21% Similarity=0.224 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 027325 66 RAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEK 145 (225)
Q Consensus 66 K~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~ 145 (225)
..+.+++..+..++..|+..+. ........+..+..++.+.+.+-+-+=.-+++++..++.+.++..+.--..+..
T Consensus 13 q~~q~~~~~l~~q~~~le~~~~---E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek- 88 (110)
T TIGR02338 13 QQLQQQLQAVATQKQQVEAQLK---EAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQR- 88 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3344444444444444444333 334444555566667777777655433345677777777776666555444443
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 027325 146 LSAEDEEEILAEFDNLEAQ 164 (225)
Q Consensus 146 ~~~~DedELe~EL~~L~~e 164 (225)
-.+.|...+..++..
T Consensus 89 ----~~~~l~~~l~e~q~~ 103 (110)
T TIGR02338 89 ----QEERLREQLKELQEK 103 (110)
T ss_pred ----HHHHHHHHHHHHHHH
Confidence 234455555555544
No 94
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=47.26 E-value=2.7e+02 Score=26.81 Aligned_cols=71 Identities=23% Similarity=0.245 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 20 SLKTQRRKLAQYQQQLDV-VIEAEKQAARDLIRQKR--KDRALLALKKKRAQEELLKQVDGWLINVEQQLADIE 90 (225)
Q Consensus 20 ~Lk~~~~~L~k~~~~Le~-~i~~~~~~ak~~~k~~~--k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE 90 (225)
+|..++.-.+.+...+++ +++..+......+.... +..-..+...|+..|+.+.++...+..++..+..+.
T Consensus 329 qleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 329 QLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666655555555555 45444444433332211 222334556677777777777777776666666554
No 95
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=47.18 E-value=2.8e+02 Score=26.96 Aligned_cols=15 Identities=20% Similarity=0.388 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 027325 98 VFESLKSGTNAIKAI 112 (225)
Q Consensus 98 vv~alk~~~~aLK~i 112 (225)
++..+..+...|..+
T Consensus 249 ~~~~l~~~~~~l~~~ 263 (563)
T TIGR00634 249 LLEGLGEAQLALASV 263 (563)
T ss_pred HHHHHHHHHHHHHHh
Confidence 344555555555554
No 96
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=47.14 E-value=3.9e+02 Score=28.68 Aligned_cols=115 Identities=17% Similarity=0.212 Sum_probs=56.5
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 10 KITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALK-KKRAQEELLKQVDGWLINVEQQLAD 88 (225)
Q Consensus 10 ~ite~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr-~KK~~e~~L~~~~~~l~nLe~~~~~ 88 (225)
.+...+..|.+++..+-.++.+.+++.. ++..............++.-..+|+ ||.++.+.+..+.+++..+-.+
T Consensus 334 ~~~~l~~~IAdlRl~~f~~~q~~~~l~~-i~~~~~~~~~~~t~~~~~~l~~ll~~rr~LL~~L~~~~~~~l~~l~~L--- 409 (1109)
T PRK10929 334 KPQQLDTEMAQLRVQRLRYEDLLNKQPQ-LRQIRQADGQPLTAEQNRILDAQLRTQRELLNSLLSGGDTLILELTKL--- 409 (1109)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhh-hHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3456677788888888888777777654 4332221111111112222223455 4444444444444444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HccCCHHHHHHHHHHHHHH
Q 027325 89 IELASKQKAVFESLKSGTNAIKAI------QSEINLEDVQKLMDDTEEA 131 (225)
Q Consensus 89 iE~a~~n~~vv~alk~~~~aLK~i------~~~~~id~Ve~lmde~~e~ 131 (225)
+-+ +.++.++...-..++... |+-||++-+.++..++...
T Consensus 410 -~~~--q~QL~~~~~~l~~~L~~~lFWv~s~~Pi~l~w~~~~~~~l~~l 455 (1109)
T PRK10929 410 -KVA--NSQLEDALKEVNEATHRYLFWVADVSPISLSYPLEIAQDLRRL 455 (1109)
T ss_pred -HHH--HHHHHHHHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHHH
Confidence 322 223333333333333322 2347888887777766654
No 97
>COG3078 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.48 E-value=53 Score=26.76 Aligned_cols=15 Identities=13% Similarity=0.344 Sum_probs=10.5
Q ss_pred CCCHHHHHHHHHHHH
Q 027325 148 AEDEEEILAEFDNLE 162 (225)
Q Consensus 148 ~~DedELe~EL~~L~ 162 (225)
+.|||+|+.+..++.
T Consensus 150 dddEdDl~~~~~q~D 164 (169)
T COG3078 150 DDDEDDLERDEKQED 164 (169)
T ss_pred CCchHHHHHHHHHHH
Confidence 456778888777654
No 98
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=46.47 E-value=93 Score=21.23 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 14 VDRAILSLKTQRRKLAQYQQQLDVVIE 40 (225)
Q Consensus 14 ~D~aI~~Lk~~~~~L~k~~~~Le~~i~ 40 (225)
.+.-+.+|...+..+++.+..++.+++
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~ 28 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLS 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455677888888888888888888875
No 99
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.30 E-value=3.4e+02 Score=27.71 Aligned_cols=107 Identities=8% Similarity=0.159 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 14 VDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDL-IRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLADIELA 92 (225)
Q Consensus 14 ~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~-~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE~a 92 (225)
...+|..|-..+..+..+-++-+..|.+....+|++ +.++|-.-+...|.+-+++-.-.+++. .++. -
T Consensus 77 a~~ai~eL~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~MLv~~vesL~-------~l~~----k 145 (793)
T KOG2180|consen 77 AQAAIEELFQKIQEIKSVAESTEAMVQEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVESLN-------ALLS----K 145 (793)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHH-------HHHh----h
Confidence 334444444444444444444444444444444444 223344455555555555433222221 1111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Q 027325 93 SKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEA 131 (225)
Q Consensus 93 ~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~ 131 (225)
+.-.+++.-|+....++.-..+-.++|+|..+...+.+.
T Consensus 146 r~y~e~a~~lqai~~ll~~F~~Yk~v~~I~~Ls~si~~~ 184 (793)
T KOG2180|consen 146 RSYGEAASPLQAILQLLNHFIAYKSVDEIANLSESIDKL 184 (793)
T ss_pred ccHHHHHhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 233567777777777777666667777777766655543
No 100
>PLN02678 seryl-tRNA synthetase
Probab=45.58 E-value=2.8e+02 Score=26.51 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhhh--cCCCCC
Q 027325 154 ILAEFDNLEAQLAVQ--EMPEVP 174 (225)
Q Consensus 154 Le~EL~~L~~e~~~~--~~~~vp 174 (225)
++.++..++.++... .+|++|
T Consensus 90 le~~~~~~~~~l~~~~~~iPNi~ 112 (448)
T PLN02678 90 KEAEVQEAKAALDAKLKTIGNLV 112 (448)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCC
Confidence 455555555554322 245544
No 101
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=45.07 E-value=2.8e+02 Score=26.30 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=17.4
Q ss_pred HHHHHHc-cCCHHHHHHHHHHHHHHHH
Q 027325 108 AIKAIQS-EINLEDVQKLMDDTEEAKA 133 (225)
Q Consensus 108 aLK~i~~-~~~id~Ve~lmde~~e~~e 133 (225)
+|+++.+ +|+.+-|+++.++|.=-++
T Consensus 153 i~~~l~n~~~~pe~v~~~q~di~yyve 179 (548)
T COG5665 153 ILKKLQNNEMDPEPVEEFQDDIKYYVE 179 (548)
T ss_pred HHHHHhccCCChhhHHHHHHHHHHHhh
Confidence 4555544 6888888888887754433
No 102
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=45.03 E-value=37 Score=23.37 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=16.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 12 TDVDRAILSLKTQRRKLAQYQQQLDVVIEAE 42 (225)
Q Consensus 12 te~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~ 42 (225)
......+..|+..+..+.+..+.|+.+++..
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555555555543
No 103
>PRK14141 heat shock protein GrpE; Provisional
Probab=44.84 E-value=2e+02 Score=24.62 Aligned_cols=17 Identities=12% Similarity=0.089 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027325 70 ELLKQVDGWLINVEQQL 86 (225)
Q Consensus 70 ~~L~~~~~~l~nLe~~~ 86 (225)
+.+..+...+.+|+..+
T Consensus 82 ~~~~dLLpViDnLerAl 98 (209)
T PRK14141 82 GFARDMLSVSDNLRRAL 98 (209)
T ss_pred HHHHHHhhhHhHHHHHH
Confidence 33344444444444443
No 104
>PRK14139 heat shock protein GrpE; Provisional
Probab=43.24 E-value=2e+02 Score=24.13 Aligned_cols=22 Identities=9% Similarity=0.058 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027325 18 ILSLKTQRRKLAQYQQQLDVVI 39 (225)
Q Consensus 18 I~~Lk~~~~~L~k~~~~Le~~i 39 (225)
+..|+..+..|++++..|..+.
T Consensus 34 ~~~l~~~l~~le~e~~elkd~~ 55 (185)
T PRK14139 34 APALEAELAEAEAKAAELQDSF 55 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554444
No 105
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=43.05 E-value=57 Score=24.67 Aligned_cols=40 Identities=23% Similarity=0.185 Sum_probs=22.9
Q ss_pred CCCCC--CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 4 LFVKK--PKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEK 43 (225)
Q Consensus 4 lFg~k--~~ite~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~ 43 (225)
|||.. ........-+..++.....|..+...|..+|..+.
T Consensus 20 ~~g~~G~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 20 WFGKNGILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45654 23445555556666666666666666666666443
No 106
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=43.05 E-value=88 Score=28.33 Aligned_cols=32 Identities=22% Similarity=0.177 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 53 KRKDRALLALKKKRAQEELLKQVDGWLINVEQ 84 (225)
Q Consensus 53 ~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~ 84 (225)
+|+..|+.|=|+||.|-+=|++.-..|.|=..
T Consensus 298 KNREAARECRRKKKEYVKCLENRVAVLENQNK 329 (348)
T KOG3584|consen 298 KNREAARECRRKKKEYVKCLENRVAVLENQNK 329 (348)
T ss_pred hhHHHHHHHHHhHhHHHHHHHhHHHHHhcccH
Confidence 56889999999999999999888877766433
No 107
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=42.11 E-value=3.9e+02 Score=27.13 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 027325 125 MDDTEEAKAYQDEINAIL 142 (225)
Q Consensus 125 mde~~e~~e~~~EI~e~L 142 (225)
+--+.+.....+..+..|
T Consensus 621 fsaLg~akrq~ei~~~~~ 638 (697)
T PF09726_consen 621 FSALGDAKRQLEIAQGQL 638 (697)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 108
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=42.01 E-value=3.6e+02 Score=26.78 Aligned_cols=28 Identities=21% Similarity=0.449 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 027325 119 EDVQKLMDDTEEAKAYQDEINAILGEKL 146 (225)
Q Consensus 119 d~Ve~lmde~~e~~e~~~EI~e~Ls~~~ 146 (225)
++|++|+.|.+...-..+-+..-|.++|
T Consensus 505 ~eI~KIl~DTr~lQkeiN~l~gkL~RtF 532 (594)
T PF05667_consen 505 EEIEKILSDTRELQKEINSLTGKLDRTF 532 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4666667776666666666666665554
No 109
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=41.86 E-value=2e+02 Score=23.73 Aligned_cols=50 Identities=10% Similarity=0.173 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 33 QQLDVVIEAEKQAARDLIRQ-----KRKDRALLALKKKRAQEELLKQVDGWLINV 82 (225)
Q Consensus 33 ~~Le~~i~~~~~~ak~~~k~-----~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nL 82 (225)
..+..+|..+.......+.. ++...|..++++-+++.+....+......|
T Consensus 117 ~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~A~~~v~kl~f~~kl~~ei~~~~~~l 171 (173)
T PRK00294 117 ATFKRRLKAAQDELNESFAACWDDAARREEAERLMRRMQFLDKLAQEVRQLEERL 171 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555554444444332 346899999999999988777766555443
No 110
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=41.60 E-value=3e+02 Score=25.84 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 16 RAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDL 49 (225)
Q Consensus 16 ~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~ 49 (225)
..|+.|...+..+..+.+.|..+.......++..
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~ 63 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKA 63 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888777666666553
No 111
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=41.42 E-value=2.4e+02 Score=26.95 Aligned_cols=17 Identities=35% Similarity=0.647 Sum_probs=8.3
Q ss_pred CCHHHHHHHHHHHHHHH
Q 027325 149 EDEEEILAEFDNLEAQL 165 (225)
Q Consensus 149 ~DedELe~EL~~L~~e~ 165 (225)
.+-+.|.+|+++|..++
T Consensus 405 ~e~~kL~~E~~~l~~ei 421 (445)
T cd00187 405 LEREKLLKELKELEAEI 421 (445)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34445555555555443
No 112
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=41.39 E-value=3.5e+02 Score=26.45 Aligned_cols=58 Identities=21% Similarity=0.220 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 29 AQYQQQLDVVIEAEKQAARDLIRQKRK--DRALLALKKKRAQEELLKQVDGWLINVEQQL 86 (225)
Q Consensus 29 ~k~~~~Le~~i~~~~~~ak~~~k~~~k--~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~ 86 (225)
..++..|-.++.....++..+....+. .+-...-+.|+.....|....+.+..|+.-+
T Consensus 419 ~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL 478 (518)
T PF10212_consen 419 MSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDEL 478 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666665555555544332211 1122223344444444444444444444333
No 113
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=41.28 E-value=2.7e+02 Score=25.11 Aligned_cols=78 Identities=15% Similarity=0.105 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Q 027325 56 DRALLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQ 135 (225)
Q Consensus 56 ~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~ 135 (225)
..+..+.+.+..+...+.++......|+.+---+. +.|..+.+-.......-..-...+ .++++.++.+|+..++..
T Consensus 50 Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQ--k~Nk~lkeE~~~~~~eee~kR~el-~~kFq~~L~dIq~~~ee~ 126 (309)
T PF09728_consen 50 KKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQ--KQNKKLKEESKRRAREEEEKRKEL-SEKFQATLKDIQAQMEEQ 126 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhc
Confidence 45566677777777778888888888887766554 334444444443333333333333 245555555555555544
Q ss_pred H
Q 027325 136 D 136 (225)
Q Consensus 136 ~ 136 (225)
+
T Consensus 127 ~ 127 (309)
T PF09728_consen 127 S 127 (309)
T ss_pred c
Confidence 4
No 114
>PRK14157 heat shock protein GrpE; Provisional
Probab=41.24 E-value=2.4e+02 Score=24.51 Aligned_cols=12 Identities=0% Similarity=-0.092 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 027325 24 QRRKLAQYQQQL 35 (225)
Q Consensus 24 ~~~~L~k~~~~L 35 (225)
.+..|++++..+
T Consensus 85 ~l~~le~e~~e~ 96 (227)
T PRK14157 85 PLGQAKKEAAEY 96 (227)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 115
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=41.11 E-value=1.2e+02 Score=31.74 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 20 SLKTQRRKLAQYQQQLDVVIEAEK 43 (225)
Q Consensus 20 ~Lk~~~~~L~k~~~~Le~~i~~~~ 43 (225)
++...+.+|+|++.+++.+|++..
T Consensus 926 d~~~E~~rL~K~l~kl~~ei~~~~ 949 (995)
T PTZ00419 926 DLKKELAKLEKKLAKLQKSLESYL 949 (995)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555566666666666665443
No 116
>PLN02943 aminoacyl-tRNA ligase
Probab=40.97 E-value=1e+02 Score=32.20 Aligned_cols=28 Identities=7% Similarity=0.175 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 19 LSLKTQRRKLAQYQQQLDVVIEAEKQAA 46 (225)
Q Consensus 19 ~~Lk~~~~~L~k~~~~Le~~i~~~~~~a 46 (225)
.++...+.+|+|++.+++.+|++...+.
T Consensus 885 iD~~~E~~rL~K~l~klekei~~~~~kL 912 (958)
T PLN02943 885 VDISAEVERLSKRLSKMQTEYDALAARL 912 (958)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666667777777777776544443
No 117
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=40.40 E-value=3.1e+02 Score=25.50 Aligned_cols=77 Identities=12% Similarity=0.170 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 16 RAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRK-----DR----ALLALKKKRAQEELLKQVDGWLINVEQQL 86 (225)
Q Consensus 16 ~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k-----~~----A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~ 86 (225)
.++.+|..-+..+..++..|+..|.... +.....|.. .. -..++.+-......=++......+|-.=+
T Consensus 18 ~SL~~ld~~i~~l~~~i~~ld~eI~~~v---~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dI 94 (383)
T PF04100_consen 18 QSLSNLDELIAKLRKEIRELDEEIKELV---REQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDI 94 (383)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666667777766665322 222211211 11 12344444444445566666667777777
Q ss_pred HHHHHHHHH
Q 027325 87 ADIELASKQ 95 (225)
Q Consensus 87 ~~iE~a~~n 95 (225)
-.++.|+.|
T Consensus 95 k~LD~AKrN 103 (383)
T PF04100_consen 95 KQLDNAKRN 103 (383)
T ss_pred HHHHHHHHH
Confidence 777777766
No 118
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=40.06 E-value=2.9e+02 Score=25.19 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 027325 118 LEDVQKLMDDTEEAKAYQDEINAILGEK 145 (225)
Q Consensus 118 id~Ve~lmde~~e~~e~~~EI~e~Ls~~ 145 (225)
...++.+|+++.-.-+.+++-...++.+
T Consensus 307 T~~L~eVm~e~E~~KqemEe~G~~msDG 334 (384)
T KOG0972|consen 307 TETLDEVMDEIEQLKQEMEEQGAKMSDG 334 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCC
Confidence 4567788888887777777777777653
No 119
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=39.98 E-value=2.3e+02 Score=23.92 Aligned_cols=65 Identities=20% Similarity=0.236 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 21 LKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRAL-LALKKKRAQEELLKQVDGWLINVEQQ 85 (225)
Q Consensus 21 Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~-~~Lr~KK~~e~~L~~~~~~l~nLe~~ 85 (225)
|+..++.+...+..+...|+.+...-++.-..|.+..-. .+|..||.-..++.+-.+.+...+-+
T Consensus 87 l~~~~~~~kqdi~t~~e~i~~ek~~r~k~~Te~~~n~~~~~Ll~~~k~eqd~~k~~l~~l~~~~pi 152 (209)
T COG5124 87 LKKKIQEVKQDIATYKEEIDKEKATRRKKFTEGQKNYNREALLEKRKKEQDEIKKKLNSLQKIEPI 152 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHhccccccCch
Confidence 444444444455555555554433333333334333222 23333333334444333434333333
No 120
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=39.06 E-value=49 Score=25.36 Aligned_cols=37 Identities=16% Similarity=0.269 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 13 DVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDL 49 (225)
Q Consensus 13 e~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~ 49 (225)
..+.-.-..+..+..|+++...|++.+.+.....++.
T Consensus 71 ~leak~k~see~IeaLqkkK~YlEk~v~eaE~nLrel 107 (114)
T KOG3501|consen 71 HLEAKMKSSEEKIEALQKKKTYLEKTVSEAEQNLREL 107 (114)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444445555555555555554444443333
No 121
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=38.94 E-value=1.9e+02 Score=22.56 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 027325 70 ELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSE 115 (225)
Q Consensus 70 ~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~ 115 (225)
+.+..+...+++|+..+...........++.+++.--+-|.++...
T Consensus 36 ~~~~~ll~v~D~le~a~~~~~~~~~~~~~~~g~~~i~~~l~~~L~~ 81 (137)
T cd00446 36 KFAKDLLPVLDNLERALEAAKKEEELKNLVEGVEMTLKQLLDVLEK 81 (137)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443322212233444444444444443333
No 122
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=38.75 E-value=45 Score=20.09 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027325 119 EDVQKLMDDTEEAKAYQD 136 (225)
Q Consensus 119 d~Ve~lmde~~e~~e~~~ 136 (225)
+.+++++|+|.+.++..-
T Consensus 3 ~~~D~lLDeId~vLe~NA 20 (33)
T TIGR03687 3 EGVDDLLDEIDGVLESNA 20 (33)
T ss_pred chHHHHHHHHHHHHHHhH
Confidence 467888888887777543
No 123
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=38.57 E-value=3.3e+02 Score=25.98 Aligned_cols=68 Identities=19% Similarity=0.256 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 17 AILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQ 85 (225)
Q Consensus 17 aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~ 85 (225)
.++.|...+..+....+.|..+.......+.+..+.|.+ .|..++...+.+-..+..+...+..++.-
T Consensus 30 ~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~-~~~~l~~e~~~l~~~l~~~e~~~~~~~~~ 97 (429)
T COG0172 30 KLLELDEERRKLLRELEELQAERNELSKEIGRALKRGED-DAEELIAEVKELKEKLKELEAALDELEAE 97 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch-hHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 456667777777777777666666544444333333332 34445555455555554444444444333
No 124
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=38.57 E-value=2.2e+02 Score=23.56 Aligned_cols=45 Identities=29% Similarity=0.214 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 027325 28 LAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELL 72 (225)
Q Consensus 28 L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L 72 (225)
|..-...++.+|.++.....++.-.++...|+.+.-+.+++....
T Consensus 117 l~~lk~q~q~ri~q~~~qlge~~esk~~~~Al~~i~rlrY~~~~~ 161 (168)
T KOG3192|consen 117 LKQLKSQNQERIAQCKQQLGEAFESKKYDEALKKILRLRYWYELR 161 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 666667788888888888888887888899998888888775543
No 125
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=38.14 E-value=62 Score=28.07 Aligned_cols=10 Identities=40% Similarity=0.710 Sum_probs=8.2
Q ss_pred CCCCCCCCCC
Q 027325 1 MGNLFVKKPK 10 (225)
Q Consensus 1 M~~lFg~k~~ 10 (225)
||||||..+.
T Consensus 172 mgRwFGYR~g 181 (239)
T PF10593_consen 172 MGRWFGYRPG 181 (239)
T ss_pred HhhcccCCcc
Confidence 8999998743
No 126
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=37.72 E-value=4e+02 Score=26.03 Aligned_cols=44 Identities=27% Similarity=0.425 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHH
Q 027325 120 DVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQL 165 (225)
Q Consensus 120 ~Ve~lmde~~e~~e~~~EI~e~Ls~~~~~~DedELe~EL~~L~~e~ 165 (225)
.+..+.+.+.+--+.+.++.+.|.+-. .||.+.-+.|..+...+
T Consensus 380 ~l~~~~~~l~~ie~~q~~~~~~l~~L~--~dE~~Ar~~l~~~~~~l 423 (560)
T PF06160_consen 380 ELEEIEEQLEEIEEEQEEINESLQSLR--KDEKEAREKLQKLKQKL 423 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 334444444444444555555554421 25555556666666554
No 127
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=37.58 E-value=2.2e+02 Score=24.22 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=23.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 11 ITDVDRAILSLKTQRRKLAQYQQQLDVVIEA 41 (225)
Q Consensus 11 ite~D~aI~~Lk~~~~~L~k~~~~Le~~i~~ 41 (225)
....|--+..|+.....|+..+.+.+.....
T Consensus 91 ~~~~dwEevrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 91 TEGTDWEEVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456777788888888888888887776653
No 128
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=37.06 E-value=65 Score=24.27 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 13 DVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAA 46 (225)
Q Consensus 13 e~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~a 46 (225)
+.+.++-.|+..++.++..++.|+.++.......
T Consensus 64 ~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l 97 (110)
T TIGR02338 64 DKEEAIQELKEKKETLELRVKTLQRQEERLREQL 97 (110)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666666665444333
No 129
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=36.83 E-value=4.1e+02 Score=25.93 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHHHH----HHHHHHHHhcccCCCCCHHHHHHHHHHHHHHH
Q 027325 117 NLEDVQKLMDDTEEAKA----YQDEINAILGEKLSAEDEEEILAEFDNLEAQL 165 (225)
Q Consensus 117 ~id~Ve~lmde~~e~~e----~~~EI~e~Ls~~~~~~DedELe~EL~~L~~e~ 165 (225)
....|.+-++++.+.++ .+.+|.+.|..- .-++.+....|..+...+
T Consensus 377 ~ysel~e~leel~e~leeie~eq~ei~e~l~~L--rk~E~eAr~kL~~~~~~L 427 (569)
T PRK04778 377 AYSELQEELEEILKQLEEIEKEQEKLSEMLQGL--RKDELEAREKLERYRNKL 427 (569)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 34455555555444444 455555555431 124444555555555443
No 130
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=36.71 E-value=3e+02 Score=24.28 Aligned_cols=71 Identities=14% Similarity=0.085 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Q 027325 62 LKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAK 132 (225)
Q Consensus 62 Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~ 132 (225)
+.+||..-..+......+..+.+....|+..-...+...|+..-...-+.+..--.+-=|..+-..+++..
T Consensus 107 ~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~~L~e~~ 177 (291)
T PF10475_consen 107 LQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSSQLQETL 177 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhHHHHHHH
Confidence 33444444455666667778888888888888888888888877777666643223334444444444433
No 131
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=35.65 E-value=33 Score=26.67 Aligned_cols=40 Identities=10% Similarity=0.228 Sum_probs=16.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 11 ITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLI 50 (225)
Q Consensus 11 ite~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~ 50 (225)
+...+..|..|+.....+..++......+......+...+
T Consensus 64 L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l 103 (133)
T PF06148_consen 64 LVGMDEKIEELRKPLSQFREEVESVRDELDNTQEEIEDKL 103 (133)
T ss_dssp ----------HHHHHHHHHHHHHHHHHS-STTHHHHHHHH
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666766666666666666655554444443333
No 132
>PLN02678 seryl-tRNA synthetase
Probab=35.12 E-value=4.1e+02 Score=25.40 Aligned_cols=33 Identities=9% Similarity=0.108 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 16 RAILSLKTQRRKLAQYQQQLDVVIEAEKQAARD 48 (225)
Q Consensus 16 ~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~ 48 (225)
..|+.|...+..+..+++.|..+.......++.
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~ 65 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAK 65 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888888887766555544
No 133
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=34.71 E-value=5e+02 Score=26.32 Aligned_cols=68 Identities=19% Similarity=0.296 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027325 63 KKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAIL 142 (225)
Q Consensus 63 r~KK~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~L 142 (225)
.|++.+|..+.++...+-.-+..+..+|.-. ..|....+. +-.+++.+|-.++-..+++.-...-|
T Consensus 545 ~r~~~lE~E~~~lr~elk~kee~~~~~e~~~-------------~~lr~~~~e-~~~~~e~L~~aL~amqdk~~~LE~sL 610 (697)
T PF09726_consen 545 QRRRQLESELKKLRRELKQKEEQIRELESEL-------------QELRKYEKE-SEKDTEVLMSALSAMQDKNQHLENSL 610 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3666677777777666666666665554322 334443233 44577888888888777877777777
Q ss_pred cc
Q 027325 143 GE 144 (225)
Q Consensus 143 s~ 144 (225)
+.
T Consensus 611 sa 612 (697)
T PF09726_consen 611 SA 612 (697)
T ss_pred hH
Confidence 64
No 134
>PF01452 Rota_NSP4: Rotavirus non structural protein; InterPro: IPR002107 This entry contains rotaviral non-structural protein 4 (NSP4) as well as related proteins: NSP5, NS28, and NCVP5. The final steps in the assembly of rotavirus occur in the lumen of the endoplasmic reticulum (ER). Targeting of the immature inner capsid particle (ICP) to this compartment is mediated by the cytoplasmic tail of NSP4, located in the ER membrane [, ].; PDB: 2O1J_D 1G1J_B 1G1I_B 2O1K_B 3MIW_A.
Probab=34.44 E-value=75 Score=26.06 Aligned_cols=13 Identities=38% Similarity=0.279 Sum_probs=0.0
Q ss_pred CCCCCCCCCChHH
Q 027325 3 NLFVKKPKITDVD 15 (225)
Q Consensus 3 ~lFg~k~~ite~D 15 (225)
+|||+|..+|..|
T Consensus 81 klaGykeqittkD 93 (173)
T PF01452_consen 81 KLAGYKEQITTKD 93 (173)
T ss_dssp -------------
T ss_pred HHhcccccCCcHH
Confidence 6899998888665
No 135
>PRK14127 cell division protein GpsB; Provisional
Probab=34.25 E-value=85 Score=24.12 Aligned_cols=30 Identities=17% Similarity=0.224 Sum_probs=22.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Q 027325 106 TNAIKAIQSEINLEDVQKLMDDTEEAKAYQ 135 (225)
Q Consensus 106 ~~aLK~i~~~~~id~Ve~lmde~~e~~e~~ 135 (225)
++..+.-..+.+.++|+..+|++.+..+..
T Consensus 13 ~KeF~~~~RGYd~~EVD~FLd~V~~dye~l 42 (109)
T PRK14127 13 EKEFKTSMRGYDQDEVDKFLDDVIKDYEAF 42 (109)
T ss_pred hCccCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 344444456889999999999999866654
No 136
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=34.00 E-value=4.8e+02 Score=25.84 Aligned_cols=113 Identities=10% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 027325 20 SLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAV- 98 (225)
Q Consensus 20 ~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~v- 98 (225)
..+.....+..++..++.+++........+.. ......+..++..+++.+.++...+..+...+..+........-
T Consensus 388 ~~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~---~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~ 464 (650)
T TIGR03185 388 ELQDAKSQLLKELRELEEELAEVDKKISTIPS---EEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKT 464 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHHHHHH
Q 027325 99 FESLKSGTNAIKAIQSEIN-LEDVQKLMDDTEEAKAYQ 135 (225)
Q Consensus 99 v~alk~~~~aLK~i~~~~~-id~Ve~lmde~~e~~e~~ 135 (225)
+.-+.......+.+...+. .+++..++.++...+...
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 502 (650)
T TIGR03185 465 LDEKTKQKINAFELERAITIADKAKKTLKEFREKLLER 502 (650)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 137
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=33.53 E-value=2.1e+02 Score=21.64 Aligned_cols=31 Identities=10% Similarity=0.213 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 62 LKKKRAQEELLKQVDGWLINVEQQLADIELA 92 (225)
Q Consensus 62 Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE~a 92 (225)
..+...|..+++.+..++..|...+..++.+
T Consensus 5 ~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~ 35 (126)
T TIGR00293 5 AAELQILQQQVESLQAQIAALRALIAELETA 35 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666666666555555444
No 138
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=33.53 E-value=6.3e+02 Score=27.06 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 027325 118 LEDVQKLMDDTEEAKAYQDEINAILGEKLS 147 (225)
Q Consensus 118 id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~ 147 (225)
...+.+-+.+.....+..++.-+.|..+.+
T Consensus 359 ~~~~ke~~~~~s~~~e~~e~~~eslt~G~S 388 (1174)
T KOG0933|consen 359 YEKLKEAFQEDSKLLEKAEELVESLTAGLS 388 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 345666667777777888887788877665
No 139
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=33.42 E-value=2.1e+02 Score=29.42 Aligned_cols=95 Identities=13% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHH
Q 027325 59 LLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEI 138 (225)
Q Consensus 59 ~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI 138 (225)
+.++++|+.| .|.++...++-|+.++..+.+...-..++..-+....+.+.+...+++.+ ...+.|
T Consensus 351 ~~~~~~r~~~--~l~~~~~~~~~~~g~~~~~~~~d~vi~~ir~~~~~~~~~~~L~~~~~~~~------------~qa~~i 416 (800)
T TIGR01063 351 KDVITRRTIF--ELRKAEERAHILEGLLIALDNIDEVIALIRASQNTEEAKTRLVERFSLSE------------IQAQAI 416 (800)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHhcCCCH------------HHHHHH
Q ss_pred HHHhcccCCCCCHHHHHHHHHHHHHHHhh
Q 027325 139 NAILGEKLSAEDEEEILAEFDNLEAQLAV 167 (225)
Q Consensus 139 ~e~Ls~~~~~~DedELe~EL~~L~~e~~~ 167 (225)
-++==..+...+-+.|..|++.|..++..
T Consensus 417 l~m~L~~Lt~~e~~kl~~e~~~l~~ei~~ 445 (800)
T TIGR01063 417 LDMRLQRLTGLEREKLQEEYKELLELIAD 445 (800)
T ss_pred HHhHHHHHhHHHHHHHHHHHHHHHHHHHH
No 140
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=33.22 E-value=1.6e+02 Score=30.32 Aligned_cols=26 Identities=15% Similarity=0.241 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 20 SLKTQRRKLAQYQQQLDVVIEAEKQA 45 (225)
Q Consensus 20 ~Lk~~~~~L~k~~~~Le~~i~~~~~~ 45 (225)
++...+.+|++++.+++..++....+
T Consensus 808 d~~~e~~rL~K~l~kl~~ei~~~~~k 833 (874)
T PRK05729 808 DVEAELARLEKELAKLEKEIERVEKK 833 (874)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666544433
No 141
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=32.95 E-value=2.3e+02 Score=21.83 Aligned_cols=59 Identities=10% Similarity=0.190 Sum_probs=38.5
Q ss_pred CChHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 027325 11 ITDVDRAILSLKTQ------RRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEEL 71 (225)
Q Consensus 11 ite~D~aI~~Lk~~------~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~ 71 (225)
|+...+++..++.. ......++...+.+|.+.....+++...|+. -+..-|++|+.+.+
T Consensus 45 v~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G~~--~KI~K~~~KL~ea~ 109 (115)
T PF06476_consen 45 VAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEAQAKGDS--DKIAKRQKKLAEAK 109 (115)
T ss_pred HHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHH
Confidence 44455555555544 4466777778888888888888888888875 44555566655543
No 142
>PHA02562 46 endonuclease subunit; Provisional
Probab=32.78 E-value=4.4e+02 Score=25.08 Aligned_cols=126 Identities=13% Similarity=0.195 Sum_probs=0.0
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 7 KKPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQL 86 (225)
Q Consensus 7 ~k~~ite~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~ 86 (225)
++..+.+....+..|...+..|+.+.+.++..+..+.....++ ......+-..+..+....+.+.........+.
T Consensus 290 C~~~~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~-----~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~ 364 (562)
T PHA02562 290 CTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEF-----NEQSKKLLELKNKISTNKQSLITLVDKAKKVK 364 (562)
T ss_pred CCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 027325 87 ADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEK 145 (225)
Q Consensus 87 ~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~ 145 (225)
..|+..... .......|+.+...++ ++..-..++.......+.+.+.+.++
T Consensus 365 ~ei~~l~~~------~~~~~~~l~~l~~~l~--~~~~~~~~~~ke~~~~~~i~~~~~~~ 415 (562)
T PHA02562 365 AAIEELQAE------FVDNAEELAKLQDELD--KIVKTKSELVKEKYHRGIVTDLLKDS 415 (562)
T ss_pred HHHHHHHhh------hhchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhh
No 143
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=32.12 E-value=2.5e+02 Score=22.05 Aligned_cols=53 Identities=9% Similarity=0.070 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 60 LALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAI 112 (225)
Q Consensus 60 ~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i 112 (225)
.+.++...+..++..+...+..|......++.+.-+....+..-.|..++.++
T Consensus 78 ~~~~~~~~l~~~i~~Le~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 130 (134)
T cd04779 78 EVAQEVQLVCDQIDGLEHRLKQLKPIASQTDRAQRMKMTKELSQQVLTLIQSL 130 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHhHHHHHHH
Confidence 45566777888889999999999999999999888888888877777666654
No 144
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=31.32 E-value=3.6e+02 Score=23.60 Aligned_cols=29 Identities=10% Similarity=0.147 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 65 KRAQEELLKQVDGWLINVEQQLADIELAS 93 (225)
Q Consensus 65 KK~~e~~L~~~~~~l~nLe~~~~~iE~a~ 93 (225)
..-++++..++..-+..+..-+...+...
T Consensus 54 ~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 54 LEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333
No 145
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=29.83 E-value=5.2e+02 Score=24.99 Aligned_cols=15 Identities=7% Similarity=-0.002 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 027325 71 LLKQVDGWLINVEQQ 85 (225)
Q Consensus 71 ~L~~~~~~l~nLe~~ 85 (225)
+.+++.+.+..++.+
T Consensus 117 ~~~ql~~~~~~~~~~ 131 (472)
T TIGR03752 117 EIEQLKSERQQLQGL 131 (472)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 146
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=29.75 E-value=80 Score=21.19 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027325 19 LSLKTQRRKLAQYQQQLDVVIEA 41 (225)
Q Consensus 19 ~~Lk~~~~~L~k~~~~Le~~i~~ 41 (225)
.+++.+..+++++++++++++++
T Consensus 44 ~~~r~~~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 44 LRLRRRIRRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666677777777777776654
No 147
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=29.41 E-value=4.3e+02 Score=24.56 Aligned_cols=55 Identities=20% Similarity=0.227 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 15 DRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQ 85 (225)
Q Consensus 15 D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~ 85 (225)
+..+..|+..+..|++++..|+.++++.. ..-++++.+++++......+..++.+
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~----------------k~~~k~~~~~~q~~~~~k~~~~~~~~ 295 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNP----------------KKKNKLKELEEQLASLEKRIEEAEEL 295 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-T----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc----------------chhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555444221 22233444555555555555555544
No 148
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.36 E-value=5.1e+02 Score=24.72 Aligned_cols=14 Identities=36% Similarity=0.392 Sum_probs=8.6
Q ss_pred CHHHHHHHHHHHHH
Q 027325 150 DEEEILAEFDNLEA 163 (225)
Q Consensus 150 DedELe~EL~~L~~ 163 (225)
..++++.+++.+..
T Consensus 90 ~~~~~~~~l~~~ll 103 (429)
T COG0172 90 ALDELEAELDTLLL 103 (429)
T ss_pred HHHHHHHHHHHHHH
Confidence 45566677666654
No 149
>PRK14161 heat shock protein GrpE; Provisional
Probab=29.27 E-value=3.3e+02 Score=22.58 Aligned_cols=20 Identities=0% Similarity=0.185 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHccCC
Q 027325 98 VFESLKSGTNAIKAIQSEIN 117 (225)
Q Consensus 98 vv~alk~~~~aLK~i~~~~~ 117 (225)
++.+++..-+.|.++.+..+
T Consensus 100 ~~~Gv~mi~k~l~~vL~~~G 119 (178)
T PRK14161 100 IIAGVQMTKDELDKVFHKHH 119 (178)
T ss_pred HHHHHHHHHHHHHHHHHHCC
Confidence 44444444444444444333
No 150
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=28.87 E-value=4.8e+02 Score=26.66 Aligned_cols=45 Identities=13% Similarity=0.200 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHh
Q 027325 120 DVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLA 166 (225)
Q Consensus 120 ~Ve~lmde~~e~~e~~~EI~e~Ls~~~~~~DedELe~EL~~L~~e~~ 166 (225)
+..++..|..+.....+++..+|++.- .=-.-|-.||.++.....
T Consensus 425 e~~~i~~E~~~l~~e~~~l~~~L~~~~--~~~~~i~~el~~~~~~~g 469 (735)
T TIGR01062 425 EEHAIIDEQSELEKERAILEKILKSER--ELNQLVKKEIQADATKYG 469 (735)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHhC
Confidence 344555566666666666666665420 011224456666655543
No 151
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=28.81 E-value=1.7e+02 Score=28.65 Aligned_cols=58 Identities=21% Similarity=0.253 Sum_probs=42.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 027325 10 KITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQ 68 (225)
Q Consensus 10 ~ite~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~ 68 (225)
.|.+.-+++-+|+.+++.+++..++...+..+|....|+++-.+++ .-+.++|-|-+.
T Consensus 248 riddllRancDlRRQIdEqqk~LEkyKerlnkcv~msKkLLIeKs~-qEk~a~RdKsmq 305 (775)
T KOG1151|consen 248 RIDDLLRANCDLRRQIDEQQKMLEKYKERLNKCVTMSKKLLIEKSK-QEKMACRDKSMQ 305 (775)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHhhhhhhhh
Confidence 4556667788888999988888888888888888888888776655 344556666554
No 152
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=28.35 E-value=2.6e+02 Score=20.95 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 61 ALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFE 100 (225)
Q Consensus 61 ~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~ 100 (225)
+......|+.++..+..++..|...+..++.+......+.
T Consensus 4 l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~ 43 (129)
T cd00890 4 LAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLK 43 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556677888888888888888888888877766555554
No 153
>PRK04863 mukB cell division protein MukB; Provisional
Probab=28.19 E-value=8.7e+02 Score=27.07 Aligned_cols=16 Identities=6% Similarity=0.086 Sum_probs=9.1
Q ss_pred CCCHHHHHHHHHHHHH
Q 027325 148 AEDEEEILAEFDNLEA 163 (225)
Q Consensus 148 ~~DedELe~EL~~L~~ 163 (225)
+.++++|+..++....
T Consensus 434 ~~SdEeLe~~LenF~a 449 (1486)
T PRK04863 434 DLTADNAEDWLEEFQA 449 (1486)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4566666655555543
No 154
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=28.16 E-value=3.3e+02 Score=22.22 Aligned_cols=9 Identities=11% Similarity=0.349 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 027325 101 SLKSGTNAI 109 (225)
Q Consensus 101 alk~~~~aL 109 (225)
|+..+.++|
T Consensus 148 av~~A~kil 156 (184)
T CHL00019 148 ALQRALGTL 156 (184)
T ss_pred HHHHHHHHH
Confidence 333333333
No 155
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=28.16 E-value=3.2e+02 Score=27.88 Aligned_cols=95 Identities=15% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHH
Q 027325 59 LLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEI 138 (225)
Q Consensus 59 ~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI 138 (225)
+.++++|+.| .|.++...++-|+.++..++....-..++..-+....+.+.+...+++.+. ..+.|
T Consensus 351 ~~~~~rr~~~--~l~k~~~r~~il~g~~~~~~~id~~i~iir~~~~~~~~~~~l~~~f~~~~~------------q~~~i 416 (738)
T TIGR01061 351 HEVIINRSKY--ELEKASKRLEIVEGLIKAISIIDEIIKLIRSSEDKSDAKENLIDNFKFTEN------------QAEAI 416 (738)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhhHhHHHHcCCCHHHHHHHHHHhcCCCHH------------HHHHH
Q ss_pred HHHhcccCCCCCHHHHHHHHHHHHHHHhh
Q 027325 139 NAILGEKLSAEDEEEILAEFDNLEAQLAV 167 (225)
Q Consensus 139 ~e~Ls~~~~~~DedELe~EL~~L~~e~~~ 167 (225)
-+|==..+...+-+.|..|+..|..++..
T Consensus 417 l~m~l~~lt~~e~~kl~~e~~~l~~~i~~ 445 (738)
T TIGR01061 417 VSLRLYRLTNTDIFELKEEQNELEKKIIS 445 (738)
T ss_pred HhhHHHHHhHHHHHHHHHHHHHHHHHHHH
No 156
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=27.77 E-value=2.5e+02 Score=20.64 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 027325 19 LSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELL 72 (225)
Q Consensus 19 ~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L 72 (225)
-.|+..+....+.+...+.++..+....|...+..+|.+..++..+=-.+|+.+
T Consensus 4 e~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~k~eRK~RtHRLi~rGa~lEsi~ 57 (86)
T PF12958_consen 4 EELQAEIEKAEKKLEQAEHKIKQLENRKKKLEKKERKERTHRLIERGAILESIF 57 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 355666666666666666666666666666665445555555555555555444
No 157
>PRK10547 chemotaxis protein CheA; Provisional
Probab=27.74 E-value=2.4e+02 Score=28.44 Aligned_cols=68 Identities=13% Similarity=0.173 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Q 027325 66 RAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKA 133 (225)
Q Consensus 66 K~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e 133 (225)
.+++-.++.....+..|++.+..+|..-.+.+.++++=.+..++|..-+-++++.+..+.-.+++.++
T Consensus 5 ~~l~~F~~Ea~E~l~~le~~Ll~LE~~p~d~e~in~lFRa~HTiKG~a~~~g~~~i~~l~H~~E~lld 72 (670)
T PRK10547 5 DFYQTFFDEADELLADMEQHLLVLDPEAPDAEQLNAIFRAAHSIKGGAGTFGFTVLQETTHLMENLLD 72 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhhHHhhcCchHHHHHHHHHHHHHH
Confidence 45566778888889999999999998878899999999999999999888887765555444444444
No 158
>PF13166 AAA_13: AAA domain
Probab=27.22 E-value=6.2e+02 Score=25.00 Aligned_cols=18 Identities=11% Similarity=0.158 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027325 20 SLKTQRRKLAQYQQQLDV 37 (225)
Q Consensus 20 ~Lk~~~~~L~k~~~~Le~ 37 (225)
.+...+..+...+.....
T Consensus 367 ~l~~~i~~~n~~i~~~n~ 384 (712)
T PF13166_consen 367 ELNSIIDELNELIEEHNE 384 (712)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 159
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=26.51 E-value=2.4e+02 Score=20.08 Aligned_cols=33 Identities=18% Similarity=0.412 Sum_probs=19.3
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 9 PKITDVDRAILSLKTQRRKLAQYQQQLDVVIEA 41 (225)
Q Consensus 9 ~~ite~D~aI~~Lk~~~~~L~k~~~~Le~~i~~ 41 (225)
|.+...+..+..|...-..|...++.+...+..
T Consensus 14 P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~ 46 (92)
T PF14712_consen 14 PDLDRLDQQLQELRQSQEELLQQIDRLNEKLKE 46 (92)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666655555555555555543
No 160
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=26.50 E-value=5.5e+02 Score=24.29 Aligned_cols=62 Identities=21% Similarity=0.176 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 027325 56 DRALLALKKKRAQEEL------------LKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEIN 117 (225)
Q Consensus 56 ~~A~~~Lr~KK~~e~~------------L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~ 117 (225)
.+|+.+||.|+..... .-+.++.+..-..-+..++.|+-+.+.+=+|.--+..||++...+.
T Consensus 136 NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~ 209 (536)
T KOG4648|consen 136 NRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARIN 209 (536)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhc
Confidence 4888899998875432 2334555666666777788889999999999888999998888765
No 161
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=26.37 E-value=2.7e+02 Score=20.57 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 13 DVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAA 46 (225)
Q Consensus 13 e~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~a 46 (225)
+.+.++-.|...+..+...++.++..+.......
T Consensus 60 ~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~ 93 (105)
T cd00632 60 EKEEARTELKERLETIELRIKRLERQEEDLQEKL 93 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666676666666666666666665444443
No 162
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=26.32 E-value=4.5e+02 Score=25.00 Aligned_cols=16 Identities=13% Similarity=0.096 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 027325 26 RKLAQYQQQLDVVIEA 41 (225)
Q Consensus 26 ~~L~k~~~~Le~~i~~ 41 (225)
+.|..+++.|+.+|+.
T Consensus 409 ~~l~~~i~~l~~~i~~ 424 (462)
T PRK08032 409 DGVNKTLKKLTKQYNA 424 (462)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 163
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=26.14 E-value=82 Score=24.17 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 14 VDRAILSLKTQRRKLAQYQQQLDVVIEAEKQA 45 (225)
Q Consensus 14 ~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ 45 (225)
....|...+...+.|......|+.+|..++..
T Consensus 55 l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 55 LQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33444466666666666666666666655444
No 164
>PRK14156 heat shock protein GrpE; Provisional
Probab=26.12 E-value=3.8e+02 Score=22.25 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027325 69 EELLKQVDGWLINVEQQL 86 (225)
Q Consensus 69 e~~L~~~~~~l~nLe~~~ 86 (225)
++.+..+.--++||+..+
T Consensus 77 ~~~~~~LLpVlDnLerAl 94 (177)
T PRK14156 77 QDLAKAILPSLDNLERAL 94 (177)
T ss_pred HHHHHHHhhHHhHHHHHH
Confidence 333444444444444443
No 165
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=26.03 E-value=6.9e+02 Score=25.14 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=30.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHhh
Q 027325 115 EINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAV 167 (225)
Q Consensus 115 ~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~~~DedELe~EL~~L~~e~~~ 167 (225)
.++--+++++..++.+......++...|+. + -+=+-.||.+|...-.+
T Consensus 400 rlt~~e~~k~~~e~~~l~~~i~~~~~~L~~-~----~~~~~~el~~l~~kyg~ 447 (635)
T PRK09631 400 RISLFDIDKNQKEIRILNKELKSVEKNLKS-I----KGYAINFIDKLLAKYSK 447 (635)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHhCC
Confidence 344445666667777777777777777766 1 23456777777766543
No 166
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=25.89 E-value=8.5e+02 Score=26.18 Aligned_cols=118 Identities=15% Similarity=0.224 Sum_probs=0.0
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 8 KPKITDVDRAILSLKTQRRKLAQYQQQLDVVI--EAEKQAARDLIRQ-KRKDRALLALKKKRAQEELLKQVDGWLINVEQ 84 (225)
Q Consensus 8 k~~ite~D~aI~~Lk~~~~~L~k~~~~Le~~i--~~~~~~ak~~~k~-~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~ 84 (225)
+|.|++..+-+.+...+++.|+++...++.+| +-|....-. ++. ......-..-+++..+++|+.++..++.=..+
T Consensus 724 ~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~-ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~ 802 (1141)
T KOG0018|consen 724 GPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVR-IREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQ 802 (1141)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCee-eehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheec
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Q 027325 85 QLADIELASKQKAVFE-SLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAY 134 (225)
Q Consensus 85 ~~~~iE~a~~n~~vv~-alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~ 134 (225)
...+..++.+. ..+.....++.+.+ +.+.....++++ +.++.
T Consensus 803 -----~d~~~~ve~~~~~v~~~~~~~~~~~~--~e~~~~k~i~e~-~~~e~ 845 (1141)
T KOG0018|consen 803 -----KDTQRRVERWERSVEDLEKEIEGLKK--DEEAAEKIIAEI-EELEK 845 (1141)
T ss_pred -----ccHHHHHHHHHHHHHHHHHhHHhhHH--HHHHHHHHHhhH-HHHHH
No 167
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=25.88 E-value=1.8e+02 Score=18.93 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 21 LKTQRRKLAQYQQQLDVVIEAEKQA 45 (225)
Q Consensus 21 Lk~~~~~L~k~~~~Le~~i~~~~~~ 45 (225)
|....+.++++++.++.+|..+..+
T Consensus 10 Lqe~~d~IEqkiedid~qIaeLe~K 34 (46)
T PF08946_consen 10 LQEHYDNIEQKIEDIDEQIAELEAK 34 (46)
T ss_dssp -----THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHhHHHHHHHHHHHHHH
Confidence 5566677777777777777655433
No 168
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=25.72 E-value=2.2e+02 Score=23.14 Aligned_cols=41 Identities=24% Similarity=0.348 Sum_probs=27.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHH
Q 027325 109 IKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEF 158 (225)
Q Consensus 109 LK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~~~DedELe~EL 158 (225)
|++..+.++.++.++++++.+|..++..+ ++.+|+|+-+||
T Consensus 10 L~~~L~~lp~~e~~e~l~~Y~e~f~d~~~---------~G~sEeeii~~L 50 (181)
T PF08006_consen 10 LEKYLKKLPEEEREEILEYYEEYFDDAGE---------EGKSEEEIIAEL 50 (181)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhhh---------CCCCHHHHHHHc
Confidence 44444568899999999999887775432 123556666665
No 169
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=25.62 E-value=1.7e+02 Score=26.80 Aligned_cols=49 Identities=29% Similarity=0.365 Sum_probs=22.0
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 027325 1 MGNLFVKKPKITDVDRAILSLKTQRRKL----AQYQQQLDVVIEAEKQAARDLIR 51 (225)
Q Consensus 1 M~~lFg~k~~ite~D~aI~~Lk~~~~~L----~k~~~~Le~~i~~~~~~ak~~~k 51 (225)
|..|||++++ |+ ..-+..++.....| ....++....+.+.....|..+-
T Consensus 1 M~FlF~k~~K-tP-~ElVr~l~e~L~~L~~~~~~~~~k~~eeisK~L~~mK~IL~ 53 (335)
T PF08569_consen 1 MSFLFKKKPK-TP-AELVRSLREALEKLDSKSDKKREKAQEEISKYLQQMKEILY 53 (335)
T ss_dssp ------------H-HHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCCCCC-CH-HHHHHHHHHHHHHhccccCcchhhHHHHHHHHHHHHHHHhc
Confidence 8899999655 33 24566677777666 35555555556666566665543
No 170
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=25.55 E-value=4.7e+02 Score=23.03 Aligned_cols=22 Identities=14% Similarity=0.354 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027325 20 SLKTQRRKLAQYQQQLDVVIEA 41 (225)
Q Consensus 20 ~Lk~~~~~L~k~~~~Le~~i~~ 41 (225)
.+.....+|..|.+-.+.++..
T Consensus 32 ~i~~~~ekLs~~ldvVe~~L~~ 53 (291)
T PF10475_consen 32 DIEELQEKLSHYLDVVEKKLSR 53 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666666666665543
No 171
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=25.45 E-value=86 Score=19.93 Aligned_cols=21 Identities=24% Similarity=0.172 Sum_probs=17.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHH
Q 027325 44 QAARDLIRQKRKDRALLALKK 64 (225)
Q Consensus 44 ~~ak~~~k~~~k~~A~~~Lr~ 64 (225)
..|+.|+..|++..|+.+|..
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~e 24 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEE 24 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHH
Confidence 468899999999999988864
No 172
>PF00231 ATP-synt: ATP synthase This Pfam entry corresponds to chain g; InterPro: IPR000131 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The ATPase F1 complex gamma subunit forms the central shaft that connects the F0 rotary motor to the F1 catalytic core. The gamma subunit functions as a rotary motor inside the cylinder formed by the alpha(3)beta(3) subunits in the F1 complex []. The best-conserved region of the gamma subunit is its C terminus, which seems to be essential for assembly and catalysis. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 3OFN_G 3FKS_P 3OEE_Y 2HLD_Y 3OEH_Y 2XOK_G 3ZRY_G 3OE7_P 2WPD_G 3OAA_e ....
Probab=25.31 E-value=4.6e+02 Score=22.99 Aligned_cols=52 Identities=17% Similarity=0.293 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027325 81 NVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILG 143 (225)
Q Consensus 81 nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls 143 (225)
+|..+..+|.+.+....+++||+.-+.+ ++.+....+.....+.+.|..++.
T Consensus 2 ~lk~ik~RI~sv~~i~kIt~aMkmvA~s-----------klrk~~~~~~~~~~y~~~i~~~l~ 53 (290)
T PF00231_consen 2 SLKEIKRRIKSVKSIQKITKAMKMVAAS-----------KLRKAQKALEAARPYAETIEEILA 53 (290)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888888888888888888876654 444455555555556666555554
No 173
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.17 E-value=7.5e+02 Score=25.28 Aligned_cols=125 Identities=15% Similarity=0.114 Sum_probs=62.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 027325 12 TDVDRAILSLKTQRRKLAQYQQQLDVVIEAEK-----QAARDLIRQKRKDRALLALKKKR-AQEELLKQVDGWLINVEQQ 85 (225)
Q Consensus 12 te~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~-----~~ak~~~k~~~k~~A~~~Lr~KK-~~e~~L~~~~~~l~nLe~~ 85 (225)
|..-.+-..+-++++.|.+.++.+.+++.... ...-++--.+.-+.+++.|+.|+ .+...+.++-+...+.-+.
T Consensus 64 tSas~~s~~ia~q~~~L~q~lr~ldrqLh~qv~~Rh~allaQat~~~~~d~~l~sl~~~v~~lqs~i~riknd~~epyk~ 143 (797)
T KOG2211|consen 64 TSASKESNRIATQCDDLTQKLRELDRQLHAQVLKRHMALLAQATEELFEDLELRSLLVKVAELQSEIKRIKNDNKEPYKI 143 (797)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 34444445667788888888888887765321 11222223345677887777554 3444455554444443333
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027325 86 LADIELASKQKAVFES-------LKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGE 144 (225)
Q Consensus 86 ~~~iE~a~~n~~vv~a-------lk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~ 144 (225)
+..--..-++..|+.- .-.-++-|+.++..++.| +...-...+|++.++..
T Consensus 144 i~~kt~vl~rLhva~~lLrrsgr~l~LskkL~~l~~~~~~d--------~traaq~lneLd~l~e~ 201 (797)
T KOG2211|consen 144 IWLKTMVLTRLHVAENLLRRSGRALELSKKLASLNSSMVVD--------ATRAAQTLNELDSLLEV 201 (797)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHh--------HHHHHHHHHHHHHHHHH
Confidence 3222222222222221 122234455666666544 33444455555555543
No 174
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=25.16 E-value=8.5e+02 Score=25.93 Aligned_cols=129 Identities=22% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 18 ILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIR--QKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQ 95 (225)
Q Consensus 18 I~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k--~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE~a~~n 95 (225)
..+|..+-.+|..-.-+|..-.........++.+ ...+..--.+-|.|-.+..+++...+.+.-|..++.+-
T Consensus 370 fkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAA------ 443 (1243)
T KOG0971|consen 370 FKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAA------ 443 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Q ss_pred HHHHHHHHHHHHHHHHHHc--cCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHH
Q 027325 96 KAVFESLKSGTNAIKAIQS--EINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNL 161 (225)
Q Consensus 96 ~~vv~alk~~~~aLK~i~~--~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~~~DedELe~EL~~L 161 (225)
.|+++|-.... .+++++==.++.+--..++-.++|++-|.. ....-+-+|-+||+.+
T Consensus 444 --------lGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~E-sn~ele~DLreEld~~ 502 (1243)
T KOG0971|consen 444 --------LGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQE-SNRELELDLREELDMA 502 (1243)
T ss_pred --------hcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
No 175
>PTZ00233 variable surface protein Vir18; Provisional
Probab=24.49 E-value=1.3e+02 Score=29.23 Aligned_cols=55 Identities=11% Similarity=0.114 Sum_probs=27.3
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhhhHH
Q 027325 1 MGNLFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEK-----------QAARDLIRQKRKD 56 (225)
Q Consensus 1 M~~lFg~k~~ite~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~-----------~~ak~~~k~~~k~ 56 (225)
|.|||++-..+...=+.. .=-..+..-.++...++++|+.+. ..++++|.+++..
T Consensus 1 M~~~~~~~~~~~n~yq~~-~~~~Cin~Y~~~K~EIEqkId~f~k~~~~nFykew~~I~k~I~~KN~E 66 (509)
T PTZ00233 1 MAWPFRGFNRIINLYQTY-KTAPCMNTYSTLKSDIEQKIDDFNKATHTNIYTQWDQLNKYIITKDAE 66 (509)
T ss_pred CCcccccchhHHHHHHhh-cccchhHhHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhhhh
Confidence 899998754433221111 111234455555555566665444 3455566555543
No 176
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=24.29 E-value=4.5e+02 Score=27.77 Aligned_cols=95 Identities=15% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHH
Q 027325 59 LLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEI 138 (225)
Q Consensus 59 ~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI 138 (225)
+.+++||..| .|.+....++-|+.++..+.+.-.-..++..=+....|-..+...+++.+. +++.|
T Consensus 370 ~~~~~rr~~~--~l~k~~~r~~i~eGl~~a~~~id~vi~~ir~s~~~~~a~~~l~~~f~~s~~------------qa~aI 435 (957)
T PRK13979 370 KEVVTRRTKK--ELEIAEKRFHIVEGFIKAIGIMDEIIKTIRSSKSKKDASENLIEKFGFTDE------------QAEAI 435 (957)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhCCCHH------------HHHHH
Q ss_pred HHHhcccCCCCCHHHHHHHHHHHHHHHhh
Q 027325 139 NAILGEKLSAEDEEEILAEFDNLEAQLAV 167 (225)
Q Consensus 139 ~e~Ls~~~~~~DedELe~EL~~L~~e~~~ 167 (225)
-+|==+.+...+-+.|.+|+++|..++..
T Consensus 436 l~mrL~~Lt~le~~kl~~E~~eL~~~I~~ 464 (957)
T PRK13979 436 LELMLYRLTGLEIVAFEKEYKELEKLIKK 464 (957)
T ss_pred HhCcHHhhhhhHHHHHHHHHHHHHHHHHH
No 177
>PRK02224 chromosome segregation protein; Provisional
Probab=24.22 E-value=7.7e+02 Score=25.09 Aligned_cols=22 Identities=18% Similarity=0.471 Sum_probs=8.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q 027325 117 NLEDVQKLMDDTEEAKAYQDEI 138 (225)
Q Consensus 117 ~id~Ve~lmde~~e~~e~~~EI 138 (225)
+.+..+.+.+++.......+.+
T Consensus 644 ~~~~~e~l~~~~~~~~~~~~~l 665 (880)
T PRK02224 644 DEARIEEAREDKERAEEYLEQV 665 (880)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444443333333333
No 178
>PRK13423 F0F1 ATP synthase subunit gamma; Provisional
Probab=24.17 E-value=3.2e+02 Score=24.15 Aligned_cols=49 Identities=8% Similarity=0.186 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHccC----C-HHHHHHHHHHHH
Q 027325 81 NVEQQLADIELASKQKAVFESLKSGTNA-IKAIQSEI----N-LEDVQKLMDDTE 129 (225)
Q Consensus 81 nLe~~~~~iE~a~~n~~vv~alk~~~~a-LK~i~~~~----~-id~Ve~lmde~~ 129 (225)
++..+..+|.+.+....+++||+.-+.+ |++..+.+ . .+.|.+++.++.
T Consensus 3 ~l~~ik~RI~Sv~~t~kItkAMkmvAaaklrka~~~~~~~~~y~~~i~~~~~~l~ 57 (288)
T PRK13423 3 SLKDIKKRIVSVKNTRQITKAMKMVSAAKLRRAQENVVAARPYAAKLGEVLGSLA 57 (288)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 4667888888888889999999876544 44443332 1 455555555543
No 179
>PLN02381 valyl-tRNA synthetase
Probab=24.14 E-value=2.6e+02 Score=29.77 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 20 SLKTQRRKLAQYQQQLDVVIEAEK 43 (225)
Q Consensus 20 ~Lk~~~~~L~k~~~~Le~~i~~~~ 43 (225)
++...+.+|.+++.+++.+|+...
T Consensus 994 D~~~E~~rL~K~l~klekei~~~~ 1017 (1066)
T PLN02381 994 NAEAELEKLRNKMDEIQKQQEKLE 1017 (1066)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666665443
No 180
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=24.09 E-value=2.4e+02 Score=19.15 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 16 RAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDL 49 (225)
Q Consensus 16 ~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~ 49 (225)
..+.+++..+..|++++..+..+++.+......+
T Consensus 17 ~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 17 SRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777777777777777777777665555433
No 181
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=23.68 E-value=7.3e+02 Score=24.62 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=21.6
Q ss_pred HHHHH-HccCCHHHHHHHHHHHHHHHHHHHH
Q 027325 108 AIKAI-QSEINLEDVQKLMDDTEEAKAYQDE 137 (225)
Q Consensus 108 aLK~i-~~~~~id~Ve~lmde~~e~~e~~~E 137 (225)
+|+.+ |.+++.+.|.++.|++..-.+....
T Consensus 163 iLr~L~N~E~~pe~v~~vqDdi~yyVe~nqd 193 (575)
T KOG2150|consen 163 ILRLLDNDELDPEAVNKVQDDITYYVESNQD 193 (575)
T ss_pred HHHHhhccccCHHHHhhhhHHHHHHHHhccC
Confidence 34433 4468899999999999887776543
No 182
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=23.54 E-value=3.5e+02 Score=20.90 Aligned_cols=39 Identities=8% Similarity=0.113 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 59 LLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKA 97 (225)
Q Consensus 59 ~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~ 97 (225)
-.+......|..+++.+..++..|...+..+..+.....
T Consensus 9 ~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~ 47 (140)
T PRK03947 9 EELAAQLQALQAQIEALQQQLEELQASINELDTAKETLE 47 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666777777777777777777666655553333
No 183
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=23.46 E-value=3.2e+02 Score=20.48 Aligned_cols=51 Identities=25% Similarity=0.406 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHH-HhcccCC--CCCHHHHHHHHHHHHHHHhhhc
Q 027325 119 EDVQKLMDDTEEAKAYQDE-INA-ILGEKLS--AEDEEEILAEFDNLEAQLAVQE 169 (225)
Q Consensus 119 d~Ve~lmde~~e~~e~~~E-I~e-~Ls~~~~--~~DedELe~EL~~L~~e~~~~~ 169 (225)
+.|+.+.+.+....-...| |.. +|-..+. +++|+||..+++.|-.......
T Consensus 10 ~eI~kLqe~lk~~e~keAERigRiAlKAGLgeieI~d~eL~~aFeeiAaRFR~g~ 64 (98)
T PRK13848 10 EEIAKLQEQLKQAETREAERIGRIALKAGLGEIEIEEAELQAAFEELAKRFRGGK 64 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCHHHHHHHHHHHHHHHhcCC
Confidence 4566666666665554333 333 3334555 6899999999999998765433
No 184
>PRK14150 heat shock protein GrpE; Provisional
Probab=23.46 E-value=4.5e+02 Score=22.07 Aligned_cols=7 Identities=14% Similarity=0.458 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 027325 33 QQLDVVI 39 (225)
Q Consensus 33 ~~Le~~i 39 (225)
..|+.++
T Consensus 44 ~~l~~~l 50 (193)
T PRK14150 44 AELEAQL 50 (193)
T ss_pred HHHHHHH
Confidence 3333333
No 185
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=23.01 E-value=8.6e+02 Score=25.24 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027325 17 AILSLKTQRRKLAQYQQQLD 36 (225)
Q Consensus 17 aI~~Lk~~~~~L~k~~~~Le 36 (225)
.+..+...+..|......+.
T Consensus 675 ~l~~l~~~l~~l~~~l~~l~ 694 (1164)
T TIGR02169 675 ELQRLRERLEGLKRELSSLQ 694 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 186
>PLN02943 aminoacyl-tRNA ligase
Probab=22.61 E-value=2.9e+02 Score=29.01 Aligned_cols=42 Identities=10% Similarity=0.101 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhH
Q 027325 14 VDRAILSLKTQRRKLAQYQQQLDVVIEA--EKQAARDLIRQKRK 55 (225)
Q Consensus 14 ~D~aI~~Lk~~~~~L~k~~~~Le~~i~~--~~~~ak~~~k~~~k 55 (225)
.+.-+.+|...+..+++++.+++++++. ...+|-..+....+
T Consensus 887 ~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~ 930 (958)
T PLN02943 887 ISAEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVR 930 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHH
Confidence 4566778888888888888888888874 33555555544433
No 187
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=22.49 E-value=5.1e+02 Score=22.37 Aligned_cols=88 Identities=13% Similarity=0.236 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH
Q 027325 24 QRRKLAQYQQQLDVVIEAEKQAARDLIRQKRK--DRALLALKKKRAQEELLKQVDGWLINVEQQLADIELA------SKQ 95 (225)
Q Consensus 24 ~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k--~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE~a------~~n 95 (225)
.+..+++....|...++.+..++......|.+ ..+...+.+=+.+...+. ....++..++..+... -.+
T Consensus 46 ~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~---~l~~~i~~l~~~~~~l~~~~~~~~~ 122 (264)
T PF06008_consen 46 QLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQ---NLQDNIQELIEQVESLNENGDQLPS 122 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCcccCCCCH
Confidence 34455555666666666666666666555543 233344444444444333 3344444444444332 345
Q ss_pred HHHHHHHHHHHHHHHHHHc
Q 027325 96 KAVFESLKSGTNAIKAIQS 114 (225)
Q Consensus 96 ~~vv~alk~~~~aLK~i~~ 114 (225)
..+-.+++.+...|+.|.+
T Consensus 123 ~~l~~~l~ea~~mL~emr~ 141 (264)
T PF06008_consen 123 EDLQRALAEAQRMLEEMRK 141 (264)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 6677788888888887755
No 188
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=22.05 E-value=3.1e+02 Score=20.75 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=16.7
Q ss_pred CCCCCCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 4 LFVKKPKIT-DVDRAILSLKTQRRKLAQYQQQLDVVIE 40 (225)
Q Consensus 4 lFg~k~~it-e~D~aI~~Lk~~~~~L~k~~~~Le~~i~ 40 (225)
+||.+..|+ ..+..|--|...++-..+-+..|+++++
T Consensus 55 ilG~~~~i~Rt~~Qvv~~l~RRiDYV~~Ni~tleKql~ 92 (99)
T PF13758_consen 55 ILGEGQGITRTREQVVDVLSRRIDYVQQNIETLEKQLE 92 (99)
T ss_pred HhCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456553332 2334444444444444444444444444
No 189
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=21.99 E-value=1.6e+02 Score=20.90 Aligned_cols=43 Identities=9% Similarity=0.192 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccCC
Q 027325 75 VDGWLINVEQQLADIELASKQ-KAVFESLKSGTNAIKAIQSEIN 117 (225)
Q Consensus 75 ~~~~l~nLe~~~~~iE~a~~n-~~vv~alk~~~~aLK~i~~~~~ 117 (225)
....+..|++++..+|+-... -..+..|+.|.+.++..++.++
T Consensus 6 fEeal~~LE~IV~~LE~g~l~Leesl~lyeeG~~L~k~C~~~L~ 49 (75)
T PRK14066 6 FETALKKLEEVVKKLEGGELSLDDSLKAFEEGVKHAAFCSKKLD 49 (75)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777665554 3577888888888888877654
No 190
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=21.80 E-value=3.9e+02 Score=20.82 Aligned_cols=110 Identities=18% Similarity=0.207 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 20 SLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVF 99 (225)
Q Consensus 20 ~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv 99 (225)
.|-..-+.+..++..+..-.. ....+..+...+...|...|...-.++....++......+..+........
T Consensus 11 ~Ll~d~~~l~~~v~~l~~~~~--~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~------ 82 (150)
T PF07200_consen 11 ELLSDEEKLDAFVKSLPQVQE--LQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKE------ 82 (150)
T ss_dssp HHHHH-HHHHHHGGGGS--HH--HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHcCHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 444455566666666544222 234455666778889998888888888777777766666666554443222
Q ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 027325 100 ESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS 147 (225)
Q Consensus 100 ~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~ 147 (225)
.-+..+...++.+ .+..-++..+..+++-++.|...+.
T Consensus 83 -------~~~~~l~~~~s~~---~l~~~L~~~~~e~eeeSe~lae~fl 120 (150)
T PF07200_consen 83 -------QQQDELSSNYSPD---ALLARLQAAASEAEEESEELAEEFL 120 (150)
T ss_dssp -------HHHHHHHHCHHHH---HHHHHHHHHHHHHHHHHHHHC-S-S
T ss_pred -------HHHHHHHccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2333444455443 4566688888899999999987663
No 191
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=21.72 E-value=1.8e+02 Score=20.71 Aligned_cols=43 Identities=9% Similarity=0.221 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccCC
Q 027325 75 VDGWLINVEQQLADIELASKQ-KAVFESLKSGTNAIKAIQSEIN 117 (225)
Q Consensus 75 ~~~~l~nLe~~~~~iE~a~~n-~~vv~alk~~~~aLK~i~~~~~ 117 (225)
....+..|++++..+++-... -+.+..|+.|.+.++..+..++
T Consensus 8 fEeal~~Le~IV~~LE~gdl~Leesl~lyeeG~~L~k~C~~~L~ 51 (76)
T PRK14068 8 FEEMMQELEQIVQKLDNETVSLEESLDLYQRGMKLSAACDTTLK 51 (76)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777665544 3577888888888888766553
No 192
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=21.71 E-value=4.6e+02 Score=25.03 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 22 KTQRRKLAQYQQQLDVVIEAEKQAAR 47 (225)
Q Consensus 22 k~~~~~L~k~~~~Le~~i~~~~~~ak 47 (225)
+.+..-++.|+..|+.+|........
T Consensus 162 ~vQ~~L~~~Rl~~L~~qi~~~~~~l~ 187 (475)
T PF10359_consen 162 RVQIELIQERLDELEEQIEKHEEKLG 187 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455566666666666655444443
No 193
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=21.62 E-value=6e+02 Score=22.92 Aligned_cols=125 Identities=18% Similarity=0.205 Sum_probs=0.0
Q ss_pred CCCCCCCC------------CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 027325 1 MGNLFVKK------------PKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQ 68 (225)
Q Consensus 1 M~~lFg~k------------~~ite~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~ 68 (225)
+|+|||+. +--+.+|.-+..|....+.|.+-+..|+...+......+++-..=---..+...-....+
T Consensus 75 l~klf~k~~~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ag~~~~~~l~~~~~ 154 (333)
T PF05816_consen 75 LGKLFGKAKNSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIAAGELKLEELEAELL 154 (333)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---HHHHHHHH
Q 027325 69 EELLKQVD------GWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEIN---LEDVQKLM 125 (225)
Q Consensus 69 e~~L~~~~------~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~---id~Ve~lm 125 (225)
......-. ..+..++..+..++.-..+..+..+...-+-..=.+-..-| +++|+.+.
T Consensus 155 ~~~~~~~~~d~~~~q~~~~~~~~l~~leqRi~DL~~~~~va~Q~~pqir~iq~nN~~Li~ki~~a~ 220 (333)
T PF05816_consen 155 PALQADAEGDQMDAQELADLEQALFRLEQRIQDLQLSRQVAIQTAPQIRMIQNNNRELIEKIQSAI 220 (333)
T ss_pred HHHhhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHH
No 194
>PRK08026 flagellin; Validated
Probab=21.57 E-value=7.7e+02 Score=24.16 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=8.5
Q ss_pred CCHHHHHHHHHHHHHHH
Q 027325 149 EDEEEILAEFDNLEAQL 165 (225)
Q Consensus 149 ~DedELe~EL~~L~~e~ 165 (225)
.|-.-|..|+.+|..++
T Consensus 107 ~DR~aiq~Ei~qL~~eI 123 (529)
T PRK08026 107 SDLDSIQDEIKSRLDEI 123 (529)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555555444
No 195
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=21.56 E-value=4.2e+02 Score=24.83 Aligned_cols=93 Identities=18% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHH
Q 027325 59 LLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEI 138 (225)
Q Consensus 59 ~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI 138 (225)
+.++++|+.+ .+.++...+.-++.++..+..+..-..|++.=...+.+-+.+.+.++- ...+.|
T Consensus 317 ~~~~~kR~~~--~l~kl~~~l~il~gl~~~~~~idfIi~vI~~s~~~~~~k~~L~~~L~~--------------~q~~yL 380 (426)
T PF00521_consen 317 LEYYQKRKQY--LLEKLEERLHILEGLIKALNKIDFIIEVIRGSIDKNKAKKDLIEELSE--------------EQADYL 380 (426)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSHHHHHHHHHHHHCH--------------HHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccchHHHHHHHhhchH--------------HHHHHH
Q ss_pred HHHhcccCCCCCHHHHHHHHHHHHHHHhh
Q 027325 139 NAILGEKLSAEDEEEILAEFDNLEAQLAV 167 (225)
Q Consensus 139 ~e~Ls~~~~~~DedELe~EL~~L~~e~~~ 167 (225)
-+|=-..+...+-+.|.+|++.+..++..
T Consensus 381 L~m~L~~LT~~e~~kL~~e~~~l~~ei~~ 409 (426)
T PF00521_consen 381 LSMPLRRLTKEEIEKLQKEIKELEKEIEE 409 (426)
T ss_dssp HTSBGGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhchHHHhhHHHHHHHHHHHHHHHHHHHH
No 196
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=21.29 E-value=2.9e+02 Score=19.19 Aligned_cols=64 Identities=17% Similarity=0.268 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 25 RRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLADI 89 (225)
Q Consensus 25 ~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~i 89 (225)
+..+......|...|.......|..+-.+ ...-..+-+.-..++..+..+.+.+..+...+..+
T Consensus 21 ~~~i~~~~~~L~~~i~~~~~eLr~~V~~n-Y~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l 84 (87)
T PF08700_consen 21 IKEIRQLENKLRQEIEEKDEELRKLVYEN-YRDFIEASDEISSMENDLSELRNLLSELQQSIQSL 84 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666777777777777777777777443 33333333444444455555555555555544443
No 197
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=21.26 E-value=4.7e+02 Score=22.25 Aligned_cols=13 Identities=8% Similarity=0.138 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 027325 75 VDGWLINVEQQLA 87 (225)
Q Consensus 75 ~~~~l~nLe~~~~ 87 (225)
+..|...|+.++.
T Consensus 223 l~~qf~~me~~i~ 235 (239)
T PF07195_consen 223 LRKQFSAMESLIS 235 (239)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444433
No 198
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=21.23 E-value=2.8e+02 Score=18.91 Aligned_cols=19 Identities=16% Similarity=0.116 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027325 25 RRKLAQYQQQLDVVIEAEK 43 (225)
Q Consensus 25 ~~~L~k~~~~Le~~i~~~~ 43 (225)
.+.|+.||..|+..|.++.
T Consensus 23 v~EL~~RIa~L~aEI~R~~ 41 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLE 41 (59)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456666666666665443
No 199
>PRK07737 fliD flagellar capping protein; Validated
Probab=20.89 E-value=5.5e+02 Score=24.72 Aligned_cols=13 Identities=15% Similarity=0.373 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 027325 28 LAQYQQQLDVVIE 40 (225)
Q Consensus 28 L~k~~~~Le~~i~ 40 (225)
|.++++.++.+|+
T Consensus 446 l~~~i~~l~~~i~ 458 (501)
T PRK07737 446 IGKDLNQIETQID 458 (501)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 200
>PRK14070 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.66 E-value=1.3e+02 Score=21.20 Aligned_cols=38 Identities=8% Similarity=0.172 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccCC
Q 027325 80 INVEQQLADIELASKQ-KAVFESLKSGTNAIKAIQSEIN 117 (225)
Q Consensus 80 ~nLe~~~~~iE~a~~n-~~vv~alk~~~~aLK~i~~~~~ 117 (225)
..|++++..+|+-... -+.+..|+.|.+.++..++.++
T Consensus 2 ~~LEeIV~~LE~gel~Leesl~lyeeG~~L~k~C~~~L~ 40 (69)
T PRK14070 2 KELEEIVNRLENEDLPLEESIKLFERGVELYRKCKEILQ 40 (69)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777766555 3567888899988888877654
No 201
>PRK06771 hypothetical protein; Provisional
Probab=20.61 E-value=3.7e+02 Score=20.09 Aligned_cols=21 Identities=14% Similarity=0.305 Sum_probs=17.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHH
Q 027325 44 QAARDLIRQKRKDRALLALKK 64 (225)
Q Consensus 44 ~~ak~~~k~~~k~~A~~~Lr~ 64 (225)
...+++++.|++-.|....|.
T Consensus 57 ~e~~~Li~~Gkki~AIK~~Re 77 (93)
T PRK06771 57 KELRQLMEEGQTVTAVKRVRE 77 (93)
T ss_pred HHHHHHHHcCCchHHHHHHHH
Confidence 577889999999888877764
No 202
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=20.32 E-value=2.6e+02 Score=18.18 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 18 ILSLKTQRRKLAQYQQQLDVVIEAE 42 (225)
Q Consensus 18 I~~Lk~~~~~L~k~~~~Le~~i~~~ 42 (225)
|..|+.+...|+.+++.|+......
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~y 25 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQY 25 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888888888888887777644
No 203
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=20.24 E-value=4.6e+02 Score=21.03 Aligned_cols=10 Identities=0% Similarity=0.199 Sum_probs=5.9
Q ss_pred HHHHHHHHHH
Q 027325 101 SLKSGTNAIK 110 (225)
Q Consensus 101 alk~~~~aLK 110 (225)
|+..+.++|+
T Consensus 134 Av~~A~kil~ 143 (167)
T PRK14475 134 AAQAAETVLA 143 (167)
T ss_pred HHHHHHHHHH
Confidence 5666666653
No 204
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=20.23 E-value=4.1e+02 Score=20.49 Aligned_cols=62 Identities=19% Similarity=0.225 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 20 SLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLADI 89 (225)
Q Consensus 20 ~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~i 89 (225)
.+...+.+|..-++.++++|. ..+..+.... +......+.++..++.+...+.+|..-...|
T Consensus 30 d~~~~l~kL~~~i~eld~~i~-------~~v~~~~~~L-L~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL 91 (132)
T PF10392_consen 30 DISTPLKKLNFDIQELDKRIR-------SQVTSNHEDL-LSQASSIEELESVLQAVRSSVESLQSSYERL 91 (132)
T ss_pred cHHHHHHHHHHHHHHHHHHHH-------HHHHhCHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555554 3443332222 3334444445555555555555555555444
No 205
>PF12443 AKNA: AT-hook-containing transcription factor; InterPro: IPR022150 This domain family is found in eukaryotes, and is approximately 110 amino acids in length. This family contains a transcription factor which regulates the expression of the costimulatory molecules on lymphocytes.
Probab=20.21 E-value=1.5e+02 Score=22.69 Aligned_cols=32 Identities=28% Similarity=0.317 Sum_probs=27.5
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 9 PKITDVDRAILSLKTQRRKLAQYQQQLDVVIE 40 (225)
Q Consensus 9 ~~ite~D~aI~~Lk~~~~~L~k~~~~Le~~i~ 40 (225)
.++++.+.-|.+|+.+.+.|..+++...++|+
T Consensus 45 ~~~~ege~~~qkL~eqteeLK~kvqe~sk~i~ 76 (106)
T PF12443_consen 45 DKIREGEQMIQKLGEQTEELKDKVQEFSKRIE 76 (106)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHhcCcC
Confidence 46788888899999999999999988888876
No 206
>PRK14164 heat shock protein GrpE; Provisional
Probab=20.07 E-value=5.7e+02 Score=22.01 Aligned_cols=12 Identities=8% Similarity=0.022 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 027325 73 KQVDGWLINVEQ 84 (225)
Q Consensus 73 ~~~~~~l~nLe~ 84 (225)
..+.-.+.||+-
T Consensus 124 ~~LLpVlDnLer 135 (218)
T PRK14164 124 TDLLPILDDLDL 135 (218)
T ss_pred HHHhhHHhHHHH
Confidence 333334444433
Done!