Query 027325
Match_columns 225
No_of_seqs 193 out of 870
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 13:29:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027325.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027325hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gd5_A Charged multivesicular 99.8 8.4E-21 2.9E-25 156.7 5.0 160 4-167 2-166 (179)
2 4abm_A Charged multivesicular 99.7 3.1E-16 1.1E-20 112.9 11.0 77 13-90 3-79 (79)
3 3frt_A Charged multivesicular 99.7 2.1E-16 7.1E-21 134.0 9.5 159 18-176 16-179 (218)
4 3um3_B Charged multivesicular 99.6 6.9E-16 2.4E-20 116.4 9.7 75 114-194 1-78 (104)
5 2luh_B Vacuolar protein-sortin 99.1 3.5E-11 1.2E-15 80.8 1.7 50 116-165 1-55 (59)
6 2lxm_B Charged multivesicular 98.6 4.3E-09 1.5E-13 70.4 0.6 54 132-192 1-56 (57)
7 3htu_B Vacuolar protein-sortin 98.2 1.7E-06 5.7E-11 53.6 5.0 38 8-45 1-38 (39)
8 3uly_B Charged multivesicular 97.9 1.3E-05 4.6E-10 55.3 4.7 45 148-199 7-51 (69)
9 2gd5_A Charged multivesicular 97.2 0.00021 7E-09 58.3 3.9 149 13-175 18-178 (179)
10 3frt_A Charged multivesicular 96.4 0.0052 1.8E-07 51.6 6.4 92 15-109 20-114 (218)
11 3na7_A HP0958; flagellar bioge 85.4 15 0.00052 30.7 16.9 28 14-41 16-43 (256)
12 3hho_A CO-chaperone protein HS 70.7 30 0.001 27.2 9.2 53 28-80 118-170 (174)
13 3ghg_A Fibrinogen alpha chain; 66.7 62 0.0021 30.3 11.4 30 60-89 92-122 (562)
14 3ghg_A Fibrinogen alpha chain; 60.0 66 0.0023 30.1 10.3 17 73-89 124-140 (562)
15 1oxz_A ADP-ribosylation factor 58.2 25 0.00084 28.4 6.4 41 122-165 106-147 (186)
16 2lch_A Protein OR38; structura 58.0 40 0.0014 24.1 7.2 66 67-132 7-72 (113)
17 3uo3_A J-type CO-chaperone JAC 58.0 44 0.0015 26.5 7.9 50 27-76 122-171 (181)
18 2dfs_A Myosin-5A; myosin-V, in 57.3 1.7E+02 0.0057 29.7 14.8 18 23-40 921-938 (1080)
19 3frr_A Uncharacterized protein 57.2 48 0.0016 26.8 8.0 56 2-60 1-56 (191)
20 3um3_B Charged multivesicular 56.7 35 0.0012 24.9 6.5 15 169-192 70-84 (104)
21 1fpo_A HSC20, chaperone protei 56.6 48 0.0016 25.9 7.9 50 28-77 114-163 (171)
22 2ke4_A CDC42-interacting prote 56.2 53 0.0018 23.6 8.5 26 16-41 15-40 (98)
23 3kyj_A CHEA3, putative histidi 55.5 66 0.0022 24.4 8.4 67 67-133 12-78 (144)
24 3bvo_A CO-chaperone protein HS 54.3 54 0.0019 26.6 8.0 51 27-77 152-202 (207)
25 3qne_A Seryl-tRNA synthetase, 53.6 1E+02 0.0035 28.4 10.6 22 153-174 89-112 (485)
26 1wle_A Seryl-tRNA synthetase; 52.7 1.3E+02 0.0045 27.7 11.3 69 17-85 71-145 (501)
27 2dq0_A Seryl-tRNA synthetase; 49.5 78 0.0027 28.8 9.1 70 16-87 31-100 (455)
28 1naf_A ADP-ribosylation factor 49.1 24 0.00082 27.7 4.8 40 123-165 91-131 (158)
29 4ani_A Protein GRPE; chaperone 49.0 37 0.0013 27.9 6.2 13 28-40 64-76 (213)
30 3lss_A Seryl-tRNA synthetase; 46.3 1.6E+02 0.0056 27.0 10.7 32 17-48 38-69 (484)
31 1tqg_A Chemotaxis protein CHEA 45.8 74 0.0025 22.2 7.8 66 67-132 6-71 (105)
32 3qne_A Seryl-tRNA synthetase, 44.5 1.4E+02 0.0047 27.5 9.9 70 16-87 33-102 (485)
33 2lw1_A ABC transporter ATP-bin 44.3 77 0.0026 21.9 9.4 67 19-85 18-85 (89)
34 3na7_A HP0958; flagellar bioge 41.4 1.5E+02 0.0051 24.4 16.7 23 21-43 16-38 (256)
35 2ld6_A Chemotaxis protein CHEA 41.2 89 0.003 23.2 6.9 66 67-132 5-70 (139)
36 4abm_A Charged multivesicular 40.3 87 0.003 21.5 9.7 70 21-95 4-77 (79)
37 2yy0_A C-MYC-binding protein; 38.7 41 0.0014 21.4 3.9 27 19-45 22-48 (53)
38 1ses_A Seryl-tRNA synthetase; 37.2 1.6E+02 0.0056 26.2 9.1 67 16-86 28-94 (421)
39 2pnv_A Small conductance calci 35.6 76 0.0026 19.4 5.0 28 17-44 10-37 (43)
40 1i5n_A Chemotaxis protein CHEA 34.7 71 0.0024 24.1 5.5 64 67-130 8-71 (146)
41 2lf0_A Uncharacterized protein 34.7 85 0.0029 23.5 5.6 50 28-77 8-57 (123)
42 2dq0_A Seryl-tRNA synthetase; 33.7 2.7E+02 0.0092 25.1 12.2 22 153-174 87-110 (455)
43 2inr_A DNA topoisomerase 4 sub 33.4 1.6E+02 0.0054 27.4 8.4 87 78-166 405-499 (514)
44 3ilw_A DNA gyrase subunit A; D 32.7 87 0.003 28.8 6.5 92 72-165 361-460 (470)
45 2lp4_A Chemotaxis protein CHEA 32.0 2E+02 0.0067 23.1 11.8 66 67-132 8-73 (225)
46 2kjg_A Archaeal protein SSO690 30.8 46 0.0016 23.7 3.3 35 108-142 11-45 (99)
47 3rh3_A Uncharacterized DUF3829 30.3 2.5E+02 0.0086 23.8 16.5 53 17-73 81-133 (264)
48 2zqm_A Prefoldin beta subunit 30.0 1.3E+02 0.0045 21.2 6.0 34 13-46 67-100 (117)
49 1i6z_A BAG-family molecular ch 28.6 1.9E+02 0.0067 21.9 8.3 18 5-23 8-25 (135)
50 1o3x_A ADP-ribosylation factor 28.2 23 0.0008 27.2 1.6 40 123-165 82-122 (140)
51 3m91_B Prokaryotic ubiquitin-l 27.9 36 0.0012 21.0 2.1 19 117-135 12-30 (44)
52 2aze_B Transcription factor E2 26.0 1.2E+02 0.0041 22.0 5.1 35 16-50 6-40 (106)
53 2l5g_B Putative uncharacterize 25.4 1.2E+02 0.0041 18.4 5.2 26 22-47 8-33 (42)
54 3mq9_A Bone marrow stromal ant 23.8 3.7E+02 0.013 23.6 11.4 6 35-40 402-407 (471)
55 1ez3_A Syntaxin-1A; three heli 23.4 1.3E+02 0.0044 21.6 5.0 16 151-166 45-60 (127)
56 3oee_G ATP synthase subunit ga 23.3 3E+02 0.01 23.1 7.9 53 81-144 2-54 (278)
57 2inr_A DNA topoisomerase 4 sub 23.2 4.5E+02 0.015 24.3 11.2 21 146-166 451-471 (514)
58 1wrd_A TOM1, target of MYB pro 22.6 80 0.0027 22.7 3.6 73 82-165 8-82 (103)
59 1i84_S Smooth muscle myosin he 22.1 6.2E+02 0.021 25.6 12.9 23 16-38 857-879 (1184)
60 3ter_A Mammalian stromal inter 21.7 1.2E+02 0.004 23.3 4.4 35 3-37 77-118 (136)
61 1zvu_A Topoisomerase IV subuni 20.7 1.4E+02 0.0048 28.9 5.8 92 59-167 329-420 (716)
62 2xcs_B DNA gyrase subunit B, D 20.4 2.4E+02 0.0082 27.2 7.3 95 59-167 561-655 (692)
63 3ilw_A DNA gyrase subunit A; D 20.0 5.1E+02 0.017 23.7 12.8 88 59-166 340-433 (470)
No 1
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=99.81 E-value=8.4e-21 Score=156.72 Aligned_cols=160 Identities=18% Similarity=0.245 Sum_probs=122.2
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 027325 4 LFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKD----RALLALKKKRAQEELLKQVDGWL 79 (225)
Q Consensus 4 lFg~k~~ite~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~----~A~~~Lr~KK~~e~~L~~~~~~l 79 (225)
+|+++.|-.....+...|+.+...|.+++.+|+..-.++...+|+++++|++. .|+.++|.||+ ..+++...
T Consensus 2 ~~~~~~p~e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~----~~~l~~~~ 77 (179)
T 2gd5_A 2 AMAEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKA----VSKLYASK 77 (179)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 57666444567888999999999999999999999999999999999999875 67888888876 57788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-CCHHHHHHHH
Q 027325 80 INVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSA-EDEEEILAEF 158 (225)
Q Consensus 80 ~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~~-~DedELe~EL 158 (225)
.+|+.+.+.++++.++..|+.+|+.++++|+.+|+.|++++|..+|++|.++++++++|+++|++++++ .|+++.++|.
T Consensus 78 a~l~~v~~~lqt~~~~~~v~~am~~~~~~M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~ 157 (179)
T 2gd5_A 78 AHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEA 157 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCCCCSHHHHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998864 2445555666
Q ss_pred HHHHHHHhh
Q 027325 159 DNLEAQLAV 167 (225)
Q Consensus 159 ~~L~~e~~~ 167 (225)
+.+...+.+
T Consensus 158 d~~v~kVl~ 166 (179)
T 2gd5_A 158 EMEIDRILF 166 (179)
T ss_dssp TTHHHHTTC
T ss_pred HHHHHHHHH
Confidence 666555543
No 2
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=99.68 E-value=3.1e-16 Score=112.93 Aligned_cols=77 Identities=36% Similarity=0.380 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 13 DVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLADIE 90 (225)
Q Consensus 13 e~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE 90 (225)
....||.+|+.+++.|.+|+++|+.+|+.+...||+++ .++|.+|+.|||+||+||++|++++++++||++++.+||
T Consensus 3 ~~~~AI~~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~-~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~iE 79 (79)
T 4abm_A 3 MEQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG-TKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALE 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35789999999999999999999999999999999999 677889999999999999999999999999999999885
No 3
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=99.66 E-value=2.1e-16 Score=133.97 Aligned_cols=159 Identities=18% Similarity=0.249 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 18 ILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKA 97 (225)
Q Consensus 18 I~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~ 97 (225)
-..|+.+.+.|.+.+.+|+..=.+....+|+++++|+...|+.+.|.--...++..+++....+|+.+.+.+.++.++..
T Consensus 16 ~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s~~~ 95 (218)
T 3frt_A 16 SLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLR 95 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888888888888999999999998766655555555555668899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-----CCHHHHHHHHHHHHHHHhhhcCCC
Q 027325 98 VFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSA-----EDEEEILAEFDNLEAQLAVQEMPE 172 (225)
Q Consensus 98 vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~~-----~DedELe~EL~~L~~e~~~~~~~~ 172 (225)
|..+|+.++++|+.+|+.|++++|..+|++|..++++++-+.+++...+++ .+++|.+.+.+++..|+....++.
T Consensus 96 v~~sM~~st~~M~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d~~v~kVldEi~~~~l~~ 175 (218)
T 3frt_A 96 VAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGK 175 (218)
T ss_dssp ---CCCCCHHHHHHHHHSTTSHHHHHHHHHHHHHHHHHSCC----------------CTTSTTTHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHhHhHhhc
Confidence 999999999999999999999999999999999999998888888877652 245566777777777776666777
Q ss_pred CCCC
Q 027325 173 VPTE 176 (225)
Q Consensus 173 vp~~ 176 (225)
+|+.
T Consensus 176 ~p~~ 179 (218)
T 3frt_A 176 APSK 179 (218)
T ss_dssp ----
T ss_pred CCCC
Confidence 7753
No 4
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=99.64 E-value=6.9e-16 Score=116.37 Aligned_cols=75 Identities=25% Similarity=0.519 Sum_probs=64.0
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCC---CCCHHHHHHHHHHHHHHHhhhcCCCCCCCCCCcccccCCCCCC
Q 027325 114 SEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS---AEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSEEQEKLDLPNV 190 (225)
Q Consensus 114 ~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~---~~DedELe~EL~~L~~e~~~~~~~~vp~~~~~~~~~~~~lP~v 190 (225)
++|+||+|+++||+++|++++++||+++|+++++ ++|++||++||++|+.+.....+..++... .+.||+|
T Consensus 1 ~~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~l~~~~l~~~~~~------~~~LP~v 74 (104)
T 3um3_B 1 DNMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLLEISGPE------TVPLPNV 74 (104)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCC------CCCCCCC
Confidence 3689999999999999999999999999999873 689999999999999998888776655321 2469999
Q ss_pred CCCC
Q 027325 191 PTKV 194 (225)
Q Consensus 191 p~~~ 194 (225)
|++.
T Consensus 75 P~~~ 78 (104)
T 3um3_B 75 PSIA 78 (104)
T ss_pred CCCc
Confidence 9765
No 5
>2luh_B Vacuolar protein-sorting-associated protein 60; VTA1, VPS60, ESCRT, MVB, novel MIT recognition mode, protein transport, endocytosis; NMR {Saccharomyces cerevisiae}
Probab=99.06 E-value=3.5e-11 Score=80.82 Aligned_cols=50 Identities=24% Similarity=0.361 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-----CCCHHHHHHHHHHHHHHH
Q 027325 116 INLEDVQKLMDDTEEAKAYQDEINAILGEKLS-----AEDEEEILAEFDNLEAQL 165 (225)
Q Consensus 116 ~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~-----~~DedELe~EL~~L~~e~ 165 (225)
|+|++|++++|+|.+.++.++||+++||++|+ ++|+++|++||++|..+.
T Consensus 1 inIDkIedlqDem~Dl~e~~nEIQE~L~rsy~~pe~DdiDE~eL~aELdaL~de~ 55 (59)
T 2luh_B 1 INIDKLQDMQDEMLDLIEQGDELQEVLAMNNNSGELDDISDAELDAELDALAQED 55 (59)
T ss_dssp CHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHTTCCGGGTTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccCCHHHHHHHHHHhhccc
Confidence 57999999999999999999999999999864 489999999999999873
No 6
>2lxm_B Charged multivesicular BODY protein 5; MIT, protein transport; NMR {Homo sapiens}
Probab=98.64 E-value=4.3e-09 Score=70.35 Aligned_cols=54 Identities=26% Similarity=0.337 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhcccCC--CCCHHHHHHHHHHHHHHHhhhcCCCCCCCCCCcccccCCCCCCCC
Q 027325 132 KAYQDEINAILGEKLS--AEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSEEQEKLDLPNVPT 192 (225)
Q Consensus 132 ~e~~~EI~e~Ls~~~~--~~DedELe~EL~~L~~e~~~~~~~~vp~~~~~~~~~~~~lP~vp~ 192 (225)
++.++||+++|+++++ ++||+||++||++|+++... ..+|+|+.+ .+..|++|+
T Consensus 1 ~e~a~EIqealsr~~g~~diDEdEL~aELe~LeqE~~~---~~~~syL~~----~~~ap~~p~ 56 (57)
T 2lxm_B 1 MEDANEINEALSRSYGTPELDEDDLEAELDALGDELLA---DEDSSYLDE----AASAPAIPE 56 (57)
T ss_dssp ---------------CCCCCCHHHHHHHHHHHHHHHHH---CSCCHHHHH----HHHC-----
T ss_pred CchHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHhh---cccchHHHH----hhhccCCCC
Confidence 4678999999999875 69999999999999988643 467888632 235788885
No 7
>3htu_B Vacuolar protein-sorting-associated protein 20; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=98.24 E-value=1.7e-06 Score=53.61 Aligned_cols=38 Identities=42% Similarity=0.650 Sum_probs=32.9
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 8 KPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQA 45 (225)
Q Consensus 8 k~~ite~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ 45 (225)
+++||+.|+||++||.++++|..|+++++..++.+...
T Consensus 1 ~skiT~qDrAIL~LK~QRDkL~qyqkri~~~~~rE~ei 38 (39)
T 3htu_B 1 GSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERAL 38 (39)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CCcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhc
Confidence 37899999999999999999999999999999876544
No 8
>3uly_B Charged multivesicular BODY protein 5; beta-hairpin, ESCRT-III, CHMPS, membrane protein-transport P complex, BROX; 2.60A {Homo sapiens} PDB: 3um1_B
Probab=97.90 E-value=1.3e-05 Score=55.32 Aligned_cols=45 Identities=27% Similarity=0.405 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHHHHhhhcCCCCCCCCCCcccccCCCCCCCCCCCCCcc
Q 027325 148 AEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSEEQEKLDLPNVPTKVPVASR 199 (225)
Q Consensus 148 ~~DedELe~EL~~L~~e~~~~~~~~vp~~~~~~~~~~~~lP~vp~~~p~~~~ 199 (225)
++||+||++||++|..++.. ..+|+|+++ ...+|.+|++.|..+.
T Consensus 7 diDE~eL~aELdaL~~e~~~---~~~pSyL~~----~~~~P~~p~~~p~~~~ 51 (69)
T 3uly_B 7 ELDEDDLEAELDALGDELLA---DEDSSYLDE----AASAPAIPEGVPTDTK 51 (69)
T ss_pred CCCHHHHHHHHHHHHHHHhc---ccCcchhhc----cccCCCCCCCCCCccc
Confidence 69999999999999988643 347999864 3579999998885543
No 9
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=97.23 E-value=0.00021 Score=58.29 Aligned_cols=149 Identities=17% Similarity=0.272 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 13 DVDRAILSLKTQRRKLAQYQQQLDVVIEAEK---------QAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVE 83 (225)
Q Consensus 13 e~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~---------~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe 83 (225)
....++..|...+..|+++.+++...|.+.. -.|+.+++.. |....|-....++.+....|+
T Consensus 18 ~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~r---------k~~~~l~~~~a~l~~v~~~lq 88 (179)
T 2gd5_A 18 KIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSR---------KAVSKLYASKAHMNSVLMGMK 88 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888999999999988888886543 2344455332 123333335567777777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCCHHHHHHHHHH
Q 027325 84 QQLADIELASKQKAVFESLKSGTNAIK--AIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS-AEDEEEILAEFDN 160 (225)
Q Consensus 84 ~~~~~iE~a~~n~~vv~alk~~~~aLK--~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~-~~DedELe~EL~~ 160 (225)
++......+..-..+..+|+..++.|+ .+.+- .+++++ ++...-...+.++++|...++ +.++++.++|+++
T Consensus 89 t~~~~~~v~~am~~~~~~M~~~n~~m~l~~i~~~--M~e~~~---e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~v~k 163 (179)
T 2gd5_A 89 NQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQAT--MRELSK---EMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDR 163 (179)
T ss_dssp HHHHHHHHTSSCCCCSHHHHTTTSSTTSSSCCHH--HHHHHH---HHHHHTSCC-------------------CTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH--HHHHHH---HHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHH
Confidence 887777777777778888888888773 22222 334444 444444456666777776554 4678888999999
Q ss_pred HHHHHhhhcCCCCCC
Q 027325 161 LEAQLAVQEMPEVPT 175 (225)
Q Consensus 161 L~~e~~~~~~~~vp~ 175 (225)
+..|...+.+|.+|+
T Consensus 164 Vl~E~~~~~l~~~P~ 178 (179)
T 2gd5_A 164 ILFEITAGALGKAPS 178 (179)
T ss_dssp TTCCC----------
T ss_pred HHHHhhHhhcccCCC
Confidence 988877655555553
No 10
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=96.45 E-value=0.0052 Score=51.65 Aligned_cols=92 Identities=15% Similarity=0.217 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 027325 15 DRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELL---KQVDGWLINVEQQLADIEL 91 (225)
Q Consensus 15 D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L---~~~~~~l~nLe~~~~~iE~ 91 (225)
.+.+..|...+..|++..+++...|.+ .||+.=..+-|..|+.+.|.||+..+.+ .++.+....|+++.....-
T Consensus 20 r~~~R~LdR~~~kle~eEkk~~~~IKk---aakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s~~~v 96 (218)
T 3frt_A 20 RKEMRVVDRQIRDIQREEEKVKRSVKD---AAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRV 96 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666653 2333222333566666666666655443 3445555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027325 92 ASKQKAVFESLKSGTNAI 109 (225)
Q Consensus 92 a~~n~~vv~alk~~~~aL 109 (225)
+..-..++.+|+..|+.|
T Consensus 97 ~~sM~~st~~M~~~n~~m 114 (218)
T 3frt_A 97 AGSLQKSTEVMKAMQSLV 114 (218)
T ss_dssp --CCCCCHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 555555555666655555
No 11
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=85.42 E-value=15 Score=30.67 Aligned_cols=28 Identities=25% Similarity=0.109 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 14 VDRAILSLKTQRRKLAQYQQQLDVVIEA 41 (225)
Q Consensus 14 ~D~aI~~Lk~~~~~L~k~~~~Le~~i~~ 41 (225)
.|..|..|+..+..|-..+..|+..+..
T Consensus 16 lD~~i~~l~~~~~~lp~el~~le~~~~~ 43 (256)
T 3na7_A 16 LDKEIDSLEPLIREKRKDLDKALNDKEA 43 (256)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4555555555555555555555555543
No 12
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=70.66 E-value=30 Score=27.17 Aligned_cols=53 Identities=11% Similarity=0.047 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 28 LAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLI 80 (225)
Q Consensus 28 L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~ 80 (225)
|..-...+...+..+......++..++...|..++++-+++.+..+.+.....
T Consensus 118 l~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~f~~kl~~~i~~~~~ 170 (174)
T 3hho_A 118 LVAFDTKVTAMQRHYLAQLQGQLAQSEWLAAADQIRKLKFIAKLKNEVERVED 170 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566677777778888888889999999999999999877766665443
No 13
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=66.75 E-value=62 Score=30.32 Aligned_cols=30 Identities=3% Similarity=0.028 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 027325 60 LALKKKRAQEELLKQVDGWLI-NVEQQLADI 89 (225)
Q Consensus 60 ~~Lr~KK~~e~~L~~~~~~l~-nLe~~~~~i 89 (225)
..||.+-...++.++.++++. .|+..+..|
T Consensus 92 E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyL 122 (562)
T 3ghg_A 92 EILRGDFSSANNRDNTYNRVSEDLRSRIEVL 122 (562)
T ss_dssp HTTSSHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHHHHH
Confidence 445444444445555555555 555555444
No 14
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=60.03 E-value=66 Score=30.11 Aligned_cols=17 Identities=6% Similarity=0.110 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027325 73 KQVDGWLINVEQQLADI 89 (225)
Q Consensus 73 ~~~~~~l~nLe~~~~~i 89 (225)
.++++++.+|..+...|
T Consensus 124 ekVdnQlsnIrvLQsnL 140 (562)
T 3ghg_A 124 RKVIEKVQHIQLLQKNV 140 (562)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444443333333
No 15
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=58.18 E-value=25 Score=28.39 Aligned_cols=41 Identities=22% Similarity=0.305 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHH-HHHHHHHhcccCCCCCHHHHHHHHHHHHHHH
Q 027325 122 QKLMDDTEEAKAY-QDEINAILGEKLSAEDEEEILAEFDNLEAQL 165 (225)
Q Consensus 122 e~lmde~~e~~e~-~~EI~e~Ls~~~~~~DedELe~EL~~L~~e~ 165 (225)
.+++.++-..... +--|..+++.. .|++++..||=.+-.++
T Consensus 106 ~Ell~eL~~~Ck~~qp~i~~Li~e~---~ddee~L~elL~~ND~L 147 (186)
T 1oxz_A 106 EDLMKELYQRCERMRPTLFRLASDT---EDNDEALAEILQANDNL 147 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc---cCCHHHHHHHHHhhHHH
Confidence 3566666666654 44566666653 36666777777666554
No 16
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=57.99 E-value=40 Score=24.07 Aligned_cols=66 Identities=11% Similarity=0.238 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Q 027325 67 AQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAK 132 (225)
Q Consensus 67 ~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~ 132 (225)
+++..++.....+..|++.+..++....+...++++..+...||..-..+++..|..+--.+.+..
T Consensus 7 l~~~F~~Ea~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~l 72 (113)
T 2lch_A 7 YIKKVTDELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNLV 72 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHHH
Confidence 455566777788888888888888776778889999999999999888888888777766665543
No 17
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=57.97 E-value=44 Score=26.54 Aligned_cols=50 Identities=12% Similarity=-0.006 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 027325 27 KLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVD 76 (225)
Q Consensus 27 ~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~ 76 (225)
.|..-...+..++..+......++..++...|..++++-+++.+..+.+.
T Consensus 122 ~l~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~y~~kl~~~ik 171 (181)
T 3uo3_A 122 GVKLLEKQNKERIQDIEAQLGQCYNDKDYAAAVKLTVELKYWYNLAKAFK 171 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556677777777888888888999999999999999988776654
No 18
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=57.30 E-value=1.7e+02 Score=29.68 Aligned_cols=18 Identities=22% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027325 23 TQRRKLAQYQQQLDVVIE 40 (225)
Q Consensus 23 ~~~~~L~k~~~~Le~~i~ 40 (225)
.....|+.++..|+.+++
T Consensus 921 ~~~~~LE~kl~eLq~rL~ 938 (1080)
T 2dfs_A 921 KLHIGLENKIMQLQRKID 938 (1080)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444445555554444
No 19
>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A
Probab=57.16 E-value=48 Score=26.76 Aligned_cols=56 Identities=14% Similarity=0.252 Sum_probs=28.9
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 027325 2 GNLFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALL 60 (225)
Q Consensus 2 ~~lFg~k~~ite~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~ 60 (225)
|.+||++...+ +--..|+-.+.+|.--+++-.......+..+-++++.|+-..|+.
T Consensus 1 ~~mf~~~~~~~---K~K~~Lklai~Rl~ll~~Kk~~~~k~~RrdIA~LL~~gk~~~Ari 56 (191)
T 3frr_A 1 GHMLGSGFKAE---RLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARI 56 (191)
T ss_dssp ---CCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCcccCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 67899875533 223334444444444444444444455555667788887777653
No 20
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=56.68 E-value=35 Score=24.92 Aligned_cols=15 Identities=40% Similarity=0.873 Sum_probs=11.0
Q ss_pred cCCCCCCCCCCcccccCCCCCCCC
Q 027325 169 EMPEVPTEGPSEEQEKLDLPNVPT 192 (225)
Q Consensus 169 ~~~~vp~~~~~~~~~~~~lP~vp~ 192 (225)
.+|.||+. .||..|.
T Consensus 70 ~LP~vP~~---------~lp~~p~ 84 (104)
T 3um3_B 70 PLPNVPSI---------ALPSKPA 84 (104)
T ss_pred CCCCCCCC---------cCCCCcc
Confidence 47888876 5887774
No 21
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=56.57 E-value=48 Score=25.94 Aligned_cols=50 Identities=14% Similarity=0.211 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 28 LAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDG 77 (225)
Q Consensus 28 L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~ 77 (225)
|..-...+..++..+......++..++...|..++++-+++.+..+.+..
T Consensus 114 l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~kl~y~~kl~~~i~~ 163 (171)
T 1fpo_A 114 LESFIKRVKKMFDTRHQLMVEQLDNETWDAAADTCRKLRFLDKLRSSAEQ 163 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666777777888888899999999999998776655544
No 22
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=56.19 E-value=53 Score=23.59 Aligned_cols=26 Identities=19% Similarity=-0.023 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 16 RAILSLKTQRRKLAQYQQQLDVVIEA 41 (225)
Q Consensus 16 ~aI~~Lk~~~~~L~k~~~~Le~~i~~ 41 (225)
+..-.|+..+..|++.+.+-....+-
T Consensus 15 qRkkkL~~Ki~el~~ei~ke~~~reg 40 (98)
T 2ke4_A 15 QQRKRLQQQLEERSRELQKEVDQREA 40 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555554444444433
No 23
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=55.49 E-value=66 Score=24.41 Aligned_cols=67 Identities=13% Similarity=0.034 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Q 027325 67 AQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKA 133 (225)
Q Consensus 67 ~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e 133 (225)
+++-.++.....+..|++.+..++..-.+...++++-.+...||.--+.++++.|.++--.+.+..+
T Consensus 12 ll~~FleEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll~ 78 (144)
T 3kyj_A 12 IWALYADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLIG 78 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHHH
Confidence 4455667777788888888888887767788888888888888888777777666665555555443
No 24
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=54.31 E-value=54 Score=26.56 Aligned_cols=51 Identities=10% Similarity=0.059 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 27 KLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDG 77 (225)
Q Consensus 27 ~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~ 77 (225)
.|..-...+...++.+......+...|+...|...+++-|++.+..+.+..
T Consensus 152 ~l~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~v~kL~y~~kl~~~i~~ 202 (207)
T 3bvo_A 152 AMKEIESIVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIKL 202 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555566666666667777777888899999999999999877666554
No 25
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=53.57 E-value=1e+02 Score=28.44 Aligned_cols=22 Identities=14% Similarity=0.273 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHhhh--cCCCCC
Q 027325 153 EILAEFDNLEAQLAVQ--EMPEVP 174 (225)
Q Consensus 153 ELe~EL~~L~~e~~~~--~~~~vp 174 (225)
+|++++.+++.++... .+|++|
T Consensus 89 ~le~~~~~~~~~~~~~l~~iPN~~ 112 (485)
T 3qne_A 89 EIIEKEAEADKNLRSKINQVGNIV 112 (485)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3556666666554332 235444
No 26
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=52.66 E-value=1.3e+02 Score=27.69 Aligned_cols=69 Identities=20% Similarity=0.165 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 17 AILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRK------DRALLALKKKRAQEELLKQVDGWLINVEQQ 85 (225)
Q Consensus 17 aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k------~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~ 85 (225)
.|+.|...+..+..+.+.|..+.......+.+..+.|.. ..+-.++.+-+.+-.++..+...+..++..
T Consensus 71 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~ 145 (501)
T 1wle_A 71 GIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQ 145 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777776655555544433310 123334444444444444444444444433
No 27
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=49.50 E-value=78 Score=28.77 Aligned_cols=70 Identities=13% Similarity=0.083 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 16 RAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLA 87 (225)
Q Consensus 16 ~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~ 87 (225)
..|+.|...+..+..+.+.|..+.+.....+.++.+.|. .+..++.+-+.+-..+..+...+..++..+.
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGE--PVDELLAKSREIVKRIGELENEVEELKKKID 100 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC--CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888888888888877766666555433332 2333444444454555555555544444443
No 28
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=49.08 E-value=24 Score=27.74 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHH-HHHHHHHhcccCCCCCHHHHHHHHHHHHHHH
Q 027325 123 KLMDDTEEAKAY-QDEINAILGEKLSAEDEEEILAEFDNLEAQL 165 (225)
Q Consensus 123 ~lmde~~e~~e~-~~EI~e~Ls~~~~~~DedELe~EL~~L~~e~ 165 (225)
+++.++-..... +--|..+++.. .|+|++..|+=.+-.++
T Consensus 91 Ell~eL~~~Ck~~qp~i~~Li~e~---~ddee~L~elL~~ND~L 131 (158)
T 1naf_A 91 DLMKELYQRCERMRPTLFRLASDT---EDNDEALAEILQANDNL 131 (158)
T ss_dssp THHHHHHHHHHTHHHHHHHHHHHC---CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc---cCCHHHHHHHHHhhHHH
Confidence 566666665554 44566666653 36666777776666554
No 29
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=48.97 E-value=37 Score=27.94 Aligned_cols=13 Identities=8% Similarity=0.110 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 027325 28 LAQYQQQLDVVIE 40 (225)
Q Consensus 28 L~k~~~~Le~~i~ 40 (225)
|...+..|+.++.
T Consensus 64 l~~~l~~l~~e~~ 76 (213)
T 4ani_A 64 AKAQIAELEAKLS 76 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333443333
No 30
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=46.26 E-value=1.6e+02 Score=27.01 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 17 AILSLKTQRRKLAQYQQQLDVVIEAEKQAARD 48 (225)
Q Consensus 17 aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~ 48 (225)
.|+.|...++.+..+.+.|..+.+.....+.+
T Consensus 38 ~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~ 69 (484)
T 3lss_A 38 AIIEADKKWRRTQFLTEASKKLINICSKAVGA 69 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777666655444433
No 31
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=45.77 E-value=74 Score=22.16 Aligned_cols=66 Identities=12% Similarity=0.238 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Q 027325 67 AQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAK 132 (225)
Q Consensus 67 ~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~ 132 (225)
+++..++.....+..|+..+..++....+...+.++..+...||..-..+++..+..+--.+.+..
T Consensus 6 l~~~F~~e~~e~l~~l~~~l~~le~~~~~~~~~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l 71 (105)
T 1tqg_A 6 YLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENIL 71 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHH
Confidence 445566777777788888888777666667888888889999998888888777777666665543
No 32
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=44.53 E-value=1.4e+02 Score=27.54 Aligned_cols=70 Identities=11% Similarity=0.056 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 16 RAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQLA 87 (225)
Q Consensus 16 ~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~ 87 (225)
..|+.|...+..+..+.+.|..+.......+.++.+.|. .|-.++.+-+.+..++..+...+..++..+.
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~--~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~ 102 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKE--DAKDLIAEKEKLSNEKKEIIEKEAEADKNLR 102 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777778888888887777765555544433332 2333444444444455555554444444433
No 33
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=44.32 E-value=77 Score=21.94 Aligned_cols=67 Identities=19% Similarity=0.188 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 19 LSLKTQRRKLAQYQQQLDVVIEAEKQAARDL-IRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQ 85 (225)
Q Consensus 19 ~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~-~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~ 85 (225)
++.+...+.|..+|..|+.+|..+....-.. +-..+......++.+...++..|+.++..=..|+.+
T Consensus 18 ykeqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~~ 85 (89)
T 2lw1_A 18 YKLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEAL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556667777777777777777655444221 112344566677788888888888777665555443
No 34
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=41.39 E-value=1.5e+02 Score=24.42 Aligned_cols=23 Identities=9% Similarity=0.072 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027325 21 LKTQRRKLAQYQQQLDVVIEAEK 43 (225)
Q Consensus 21 Lk~~~~~L~k~~~~Le~~i~~~~ 43 (225)
+...++.|...+..|-..+....
T Consensus 16 lD~~i~~l~~~~~~lp~el~~le 38 (256)
T 3na7_A 16 LDKEIDSLEPLIREKRKDLDKAL 38 (256)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Confidence 33445555555555555554433
No 35
>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}
Probab=41.16 E-value=89 Score=23.25 Aligned_cols=66 Identities=12% Similarity=0.238 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Q 027325 67 AQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAK 132 (225)
Q Consensus 67 ~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~ 132 (225)
+++..++.....+..|+..+..++....+...++++..+...||..-..+++..|..+--.+.+..
T Consensus 5 ll~~Fl~Ea~e~L~~l~~~l~~le~~~~d~~~~~~l~R~aHTLKGsA~~~G~~~l~~lah~lE~~l 70 (139)
T 2ld6_A 5 YLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENIL 70 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhHHHHhcCHHHHHHHHHHHHHHH
Confidence 345566777777888888888887666667788889999999999888888888877666665544
No 36
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=40.33 E-value=87 Score=21.47 Aligned_cols=70 Identities=16% Similarity=0.109 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 21 LKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKK--RAQE--ELLKQVDGWLINVEQQLADIELASKQ 95 (225)
Q Consensus 21 Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~K--K~~e--~~L~~~~~~l~nLe~~~~~iE~a~~n 95 (225)
.+..+..|..+++.|+.....+...+-.- ...|+.++.+. +.+. +..-...+++.++.++++++|+....
T Consensus 4 ~~~AI~~Lr~~~d~L~kkq~~L~~~i~~e-----~~~Ak~~~~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~ 77 (79)
T 4abm_A 4 EQEAIQRLRDTEEMLSKKQEFLEKKIEQE-----LTAAKKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREA 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 56778889999999998888766655433 35677766422 2222 22234478888888888888865443
No 37
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=38.71 E-value=41 Score=21.43 Aligned_cols=27 Identities=7% Similarity=-0.043 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 19 LSLKTQRRKLAQYQQQLDVVIEAEKQA 45 (225)
Q Consensus 19 ~~Lk~~~~~L~k~~~~Le~~i~~~~~~ 45 (225)
-.|+.....|..++..|..+++.+..+
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888888888888888888765544
No 38
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=37.19 E-value=1.6e+02 Score=26.25 Aligned_cols=67 Identities=16% Similarity=0.188 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 16 RAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDGWLINVEQQL 86 (225)
Q Consensus 16 ~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~~l~nLe~~~ 86 (225)
..|+.|...+..+..+.+.|..+.......+.+ +.+..+-.++.+-+.+-.++..+...+..++.-+
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPK----APPEEKEALIARGKALGEEAKRLEEALREKEARL 94 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777777777654444332 2223343444444444444554444444444433
No 39
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=35.57 E-value=76 Score=19.39 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 17 AILSLKTQRRKLAQYQQQLDVVIEAEKQ 44 (225)
Q Consensus 17 aI~~Lk~~~~~L~k~~~~Le~~i~~~~~ 44 (225)
-+..|...-+.|++++..|+.+++.+..
T Consensus 10 lvsel~~r~e~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 10 MISDLNERSEDFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3556777788888888888888876544
No 40
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=34.71 E-value=71 Score=24.08 Aligned_cols=64 Identities=17% Similarity=0.220 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 027325 67 AQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEE 130 (225)
Q Consensus 67 ~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e 130 (225)
+++..++.....+..|++.+..++....+...++++..+...||..-..+++..|..+--.+.+
T Consensus 8 ll~~Fl~Ea~e~L~~le~~L~~le~~~~d~~~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~ 71 (146)
T 1i5n_A 8 FYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMEN 71 (146)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHH
Confidence 3444556666666677777766655444556677777777777777666766665555444443
No 41
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=34.67 E-value=85 Score=23.48 Aligned_cols=50 Identities=16% Similarity=0.106 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 28 LAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLKQVDG 77 (225)
Q Consensus 28 L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~~~~~ 77 (225)
+...++.|..+++.++.+.-.+...|+......+.+.+-.+++.+.++-+
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~ 57 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLRE 57 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777776666665666667776666677666666666665544
No 42
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=33.67 E-value=2.7e+02 Score=25.15 Aligned_cols=22 Identities=18% Similarity=0.478 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhhh--cCCCCC
Q 027325 153 EILAEFDNLEAQLAVQ--EMPEVP 174 (225)
Q Consensus 153 ELe~EL~~L~~e~~~~--~~~~vp 174 (225)
+|++++.+++.++... .+|++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~ipN~~ 110 (455)
T 2dq0_A 87 ELENEVEELKKKIDYYLWRLPNIT 110 (455)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4566666666665332 235444
No 43
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=33.45 E-value=1.6e+02 Score=27.45 Aligned_cols=87 Identities=14% Similarity=0.159 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 027325 78 WLINVEQQLADIELASKQKAVFESLK--------SGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAE 149 (225)
Q Consensus 78 ~l~nLe~~~~~iE~a~~n~~vv~alk--------~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~~~~~~ 149 (225)
.+.++..++.-|.++.........|. ++...|.--...++-.+++++..+..+.....+++..+|+..- .
T Consensus 405 a~~~id~vI~iIr~s~~~~~a~~~L~~~f~lse~qa~~IL~m~L~rLT~~e~~kl~~E~~~l~~ei~~l~~iL~~~~--~ 482 (514)
T 2inr_A 405 ALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD--A 482 (514)
T ss_dssp HHHSHHHHHHHHHHCCSHHHHHHHHHTTSSCCHHHHHHHHTCCGGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHCHH--H
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHhchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCHH--H
Confidence 34556666655554444444433332 2333333222345667888888888888888888888887520 0
Q ss_pred CHHHHHHHHHHHHHHHh
Q 027325 150 DEEEILAEFDNLEAQLA 166 (225)
Q Consensus 150 DedELe~EL~~L~~e~~ 166 (225)
=.+=+-+||.++.....
T Consensus 483 ~~~~i~~el~~i~~~yg 499 (514)
T 2inr_A 483 LLNVIKEELNEIKKKFK 499 (514)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 12345677777776643
No 44
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=32.69 E-value=87 Score=28.83 Aligned_cols=92 Identities=13% Similarity=0.152 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027325 72 LKQVDGWLINVEQQLADIELASKQKAVFESLK--------SGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILG 143 (225)
Q Consensus 72 L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk--------~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls 143 (225)
|+.+.-.+.+|..++.-|..+.+..+....|. ++...|.--...++-.+++++.++..+......+..+.|+
T Consensus 361 legl~~a~~~iD~vI~iIr~s~~~~~a~~~L~~~f~lse~Qa~aIl~mrL~rLt~le~~kl~~E~~~l~~~i~~l~~iL~ 440 (470)
T 3ilw_A 361 LRGLVKALDALDEVIALIRASETVDIARAGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILA 440 (470)
T ss_dssp HHHHHHHHHTHHHHHHHHHHCSSHHHHHHHHHHHHTCCHHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44455556777777777766544333333222 2333332222345667778888888888888888888887
Q ss_pred ccCCCCCHHHHHHHHHHHHHHH
Q 027325 144 EKLSAEDEEEILAEFDNLEAQL 165 (225)
Q Consensus 144 ~~~~~~DedELe~EL~~L~~e~ 165 (225)
..- .=-.-+-+||.++....
T Consensus 441 ~~~--~~~~~i~~el~~i~~~y 460 (470)
T 3ilw_A 441 KPE--RQRGIVRDELAEIVDRH 460 (470)
T ss_dssp CHH--HHHHHHHHHHHHHHHHH
T ss_pred CHH--HHHHHHHHHHHHHHHHh
Confidence 620 01233556777776554
No 45
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=32.00 E-value=2e+02 Score=23.09 Aligned_cols=66 Identities=17% Similarity=0.197 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Q 027325 67 AQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAK 132 (225)
Q Consensus 67 ~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~ 132 (225)
+++-.++.....+.+|++.+..++..-.+...++++-.+..+||.--+-++++.|..+--.+...+
T Consensus 8 ~l~~F~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~laH~~E~~l 73 (225)
T 2lp4_A 8 FYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLL 73 (225)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHHHHHHHHH
Confidence 345566777777778888888777766677778888888888887777666555554444444433
No 46
>2kjg_A Archaeal protein SSO6904; hypothetical protein, helical protein, metal binding protein; NMR {Sulfolobus solfataricus}
Probab=30.78 E-value=46 Score=23.74 Aligned_cols=35 Identities=17% Similarity=0.355 Sum_probs=29.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027325 108 AIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAIL 142 (225)
Q Consensus 108 aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~L 142 (225)
-|++..+.+|.+.|+.+++++.+..-+.+-|-..+
T Consensus 11 eLrkfKgkvd~~~v~~IL~eiE~~~rksnni~tS~ 45 (99)
T 2kjg_A 11 KLRQFKGKVNFNLVMQILDEIELDLRGSDNIKTSI 45 (99)
T ss_dssp HHHHHTCCSCHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHhcccCHHHHHHHHHHHHHHHhcCCchhhHH
Confidence 36677788999999999999999999877666655
No 47
>3rh3_A Uncharacterized DUF3829-like protein; all alpha protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=30.30 E-value=2.5e+02 Score=23.75 Aligned_cols=53 Identities=13% Similarity=0.020 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 027325 17 AILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLIRQKRKDRALLALKKKRAQEELLK 73 (225)
Q Consensus 17 aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~k~~~k~~A~~~Lr~KK~~e~~L~ 73 (225)
.-..|++....|.+....+....+ ..+.+++..+...|..++.-...++.+..
T Consensus 81 ~r~~L~q~~~~lf~s~~~~yan~~----~~~SYlk~ed~~~~akL~~~~~~l~~em~ 133 (264)
T 3rh3_A 81 VRQNLKQNYAGLFNVRTQFYDNFN----KFLAYKKSKDTAKTAQLLDENYKLSVELS 133 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777777777765 55778888888888889988888877766
No 48
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=29.96 E-value=1.3e+02 Score=21.24 Aligned_cols=34 Identities=18% Similarity=0.158 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 13 DVDRAILSLKTQRRKLAQYQQQLDVVIEAEKQAA 46 (225)
Q Consensus 13 e~D~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~a 46 (225)
+.+.++-.|....+.+...++.|+.++.......
T Consensus 67 ~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l 100 (117)
T 2zqm_A 67 TKDKAVAELKEKIETLEVRLNALERQEKKLNEKL 100 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777777777666544443
No 49
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=28.58 E-value=1.9e+02 Score=21.95 Aligned_cols=18 Identities=17% Similarity=0.241 Sum_probs=7.9
Q ss_pred CCCCCCCChHHHHHHHHHH
Q 027325 5 FVKKPKITDVDRAILSLKT 23 (225)
Q Consensus 5 Fg~k~~ite~D~aI~~Lk~ 23 (225)
.|+|+. ++.|...-.|+.
T Consensus 8 iGkK~~-peee~~lKkL~d 25 (135)
T 1i6z_A 8 IGEKSN-PEEEVELKKLKD 25 (135)
T ss_dssp SCCCCC-HHHHHHHHHHHH
T ss_pred eCCCCC-hHHHHHHHHHHH
Confidence 455432 334555444443
No 50
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=28.24 E-value=23 Score=27.17 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHH-HHHHHHHhcccCCCCCHHHHHHHHHHHHHHH
Q 027325 123 KLMDDTEEAKAY-QDEINAILGEKLSAEDEEEILAEFDNLEAQL 165 (225)
Q Consensus 123 ~lmde~~e~~e~-~~EI~e~Ls~~~~~~DedELe~EL~~L~~e~ 165 (225)
+++.++-..... +--|..+++.. .|++++..|+=.+-.++
T Consensus 82 Ell~eL~~~ck~~qp~i~~li~e~---~ddee~l~elL~~ND~l 122 (140)
T 1o3x_A 82 DLMKELYQRCERMRPTLFRLASDT---EDNDEALAEILQANDNL 122 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc---cCCHHHHHHHHHhhHHH
Confidence 566666665554 34455555542 35566666666665543
No 51
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=27.89 E-value=36 Score=20.97 Aligned_cols=19 Identities=16% Similarity=0.324 Sum_probs=14.1
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 027325 117 NLEDVQKLMDDTEEAKAYQ 135 (225)
Q Consensus 117 ~id~Ve~lmde~~e~~e~~ 135 (225)
..+.+++++|+|.+.++..
T Consensus 12 ~~~~~D~lLDeId~vLE~N 30 (44)
T 3m91_B 12 LTEETDDLLDEIDDVLEEN 30 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHHHHHHh
Confidence 4568888888888777653
No 52
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=26.03 E-value=1.2e+02 Score=21.95 Aligned_cols=35 Identities=26% Similarity=0.270 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 16 RAILSLKTQRRKLAQYQQQLDVVIEAEKQAARDLI 50 (225)
Q Consensus 16 ~aI~~Lk~~~~~L~k~~~~Le~~i~~~~~~ak~~~ 50 (225)
..+..|+..+..|..+.+.|+..|..+....+...
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34678999999999999999998887766666554
No 53
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=25.44 E-value=1.2e+02 Score=18.45 Aligned_cols=26 Identities=8% Similarity=0.064 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 22 KTQRRKLAQYQQQLDVVIEAEKQAAR 47 (225)
Q Consensus 22 k~~~~~L~k~~~~Le~~i~~~~~~ak 47 (225)
-+.++++...|.+-+.+|..+..+.+
T Consensus 8 ~qkI~kVdrEI~Kte~kI~~lqkKlk 33 (42)
T 2l5g_B 8 IQNMDRVDREITMVEQQISKLKKKQQ 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443333
No 54
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=23.83 E-value=3.7e+02 Score=23.58 Aligned_cols=6 Identities=17% Similarity=0.235 Sum_probs=2.6
Q ss_pred HHHHHH
Q 027325 35 LDVVIE 40 (225)
Q Consensus 35 Le~~i~ 40 (225)
|++++.
T Consensus 402 ~~~~~~ 407 (471)
T 3mq9_A 402 LQQELT 407 (471)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 55
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=23.41 E-value=1.3e+02 Score=21.56 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 027325 151 EEEILAEFDNLEAQLA 166 (225)
Q Consensus 151 edELe~EL~~L~~e~~ 166 (225)
+..+..+|+.|..++.
T Consensus 45 ~~~~~~~l~~l~~~i~ 60 (127)
T 1ez3_A 45 DEKTKEELEELMSDIK 60 (127)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 4457777777776553
No 56
>3oee_G ATP synthase subunit gamma; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} SCOP: c.49.2.0 PDB: 2wpd_G* 3fks_G 2hld_G* 3oeh_G* 3ofn_G* 3zry_G* 4b2q_G* 3oe7_G*
Probab=23.33 E-value=3e+02 Score=23.07 Aligned_cols=53 Identities=8% Similarity=0.085 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027325 81 NVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGE 144 (225)
Q Consensus 81 nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI~e~Ls~ 144 (225)
+|..+..+|.+.++...+.+||+.-+.+ ++-+..+.+.....+.+.+.++++.
T Consensus 2 ~lkeIk~RI~Svk~t~kITkAMkmVAaa-----------Klrkaq~~~~~~rpY~~~~~~~~~~ 54 (278)
T 3oee_G 2 TLKEVEMRLKSIKNIEKITKTMKIVAST-----------RLSKAEKAKISAKKMDEAEQLFYKN 54 (278)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 4667778888888888888888876655 3444444444444555555555543
No 57
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=23.20 E-value=4.5e+02 Score=24.33 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=15.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHh
Q 027325 146 LSAEDEEEILAEFDNLEAQLA 166 (225)
Q Consensus 146 ~~~~DedELe~EL~~L~~e~~ 166 (225)
+...+-+.|.+|+++|..++.
T Consensus 451 LT~~e~~kl~~E~~~l~~ei~ 471 (514)
T 2inr_A 451 LTNTDIVALEGEHKELEALIK 471 (514)
T ss_dssp GSTTHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHH
Confidence 346788888888888887653
No 58
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=22.65 E-value=80 Score=22.65 Aligned_cols=73 Identities=12% Similarity=0.233 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHHH-HHHHHHHhcccCCCCCHHHHHHHHH
Q 027325 82 VEQQLADIELASKQKAVFESLKSGTNAIKAIQS-EINLEDVQKLMDDTEEAKAY-QDEINAILGEKLSAEDEEEILAEFD 159 (225)
Q Consensus 82 Le~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~-~~~id~Ve~lmde~~e~~e~-~~EI~e~Ls~~~~~~DedELe~EL~ 159 (225)
+......|+.++.++.++.-|=.+ ..- .-+..+ .+++.++-+.... +.-|..+++. .+++++..++=
T Consensus 8 ~~k~~~el~~v~~n~~lL~EML~~------~~p~~~~~~~-~el~~eL~~~c~~~qp~i~~li~~----~~dee~l~~lL 76 (103)
T 1wrd_A 8 IGKLRSELEMVSGNVRVMSEMLTE------LVPTQAEPAD-LELLQELNRTCRAMQQRVLELIPQ----IANEQLTEELL 76 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------SCTTTCCHHH-HHHHHHHHHHHHHHHHHHHHHHHH----CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh------cCCCCCCccc-HHHHHHHHHHHHHHHHHHHHHHhc----cCCHHHHHHHH
Confidence 445566666666666665544322 111 111122 3566666665554 4456666663 25666777766
Q ss_pred HHHHHH
Q 027325 160 NLEAQL 165 (225)
Q Consensus 160 ~L~~e~ 165 (225)
.+-.++
T Consensus 77 ~~ND~L 82 (103)
T 1wrd_A 77 IVNDNL 82 (103)
T ss_dssp HHHHHH
T ss_pred HhhHHH
Confidence 665554
No 59
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=22.14 E-value=6.2e+02 Score=25.56 Aligned_cols=23 Identities=9% Similarity=0.135 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027325 16 RAILSLKTQRRKLAQYQQQLDVV 38 (225)
Q Consensus 16 ~aI~~Lk~~~~~L~k~~~~Le~~ 38 (225)
+.+..++..+..+......++..
T Consensus 857 ~El~~L~~eL~el~~~L~~le~~ 879 (1184)
T 1i84_S 857 EEMQAKDEELQRTKERQQKAEAE 879 (1184)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433333
No 60
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=21.75 E-value=1.2e+02 Score=23.25 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=20.3
Q ss_pred CCCCCC-------CCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 027325 3 NLFVKK-------PKITDVDRAILSLKTQRRKLAQYQQQLDV 37 (225)
Q Consensus 3 ~lFg~k-------~~ite~D~aI~~Lk~~~~~L~k~~~~Le~ 37 (225)
.+||+= +.+.++|..|+..|..+..+..-.+.-..
T Consensus 77 Sv~gs~~~aHs~~sslD~vD~~Il~Ak~aL~evt~~l~Er~~ 118 (136)
T 3ter_A 77 SVLSSLKLATGAASTSDQVDSKIFALKSRMEKIHTLTRETQE 118 (136)
T ss_dssp ----CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chheeeeeecCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577752 44568888898888887766654443333
No 61
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=20.73 E-value=1.4e+02 Score=28.94 Aligned_cols=92 Identities=18% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHH
Q 027325 59 LLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEI 138 (225)
Q Consensus 59 ~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI 138 (225)
+.+++||+.| .|.+....++-|+.++..+.+.- +|+..++.+...-..+...+++.+ .+++.|
T Consensus 329 ~~v~~rR~~~--~L~k~~~r~hiLegl~ia~~~iD---eVI~iIR~s~~~k~~L~~~f~lse------------~QA~aI 391 (716)
T 1zvu_A 329 RDTVRRRLNY--RLEKVLKRLHILEGLLVAFLNID---EVIEIIRNEDEPKPALMSRFGLTE------------TQAEAI 391 (716)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTHH---HHHHHHHHSSSHHHHHHHSTTCCT------------THHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHhHHHHHhhHH---HHHHHHHhcCchHHHHHHhcCCCH------------HHHHHH
Q ss_pred HHHhcccCCCCCHHHHHHHHHHHHHHHhh
Q 027325 139 NAILGEKLSAEDEEEILAEFDNLEAQLAV 167 (225)
Q Consensus 139 ~e~Ls~~~~~~DedELe~EL~~L~~e~~~ 167 (225)
-+|==+.+...+.+.|++|+++|..++..
T Consensus 392 L~mrL~rLt~le~~kl~~E~~eL~~~i~~ 420 (716)
T 1zvu_A 392 LELKLRHLAKLEEMKIRGEQSELEKERDQ 420 (716)
T ss_dssp HTCCGGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHhhhhHHHHHHHHHHHHHHHHHH
No 62
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=20.36 E-value=2.4e+02 Score=27.22 Aligned_cols=95 Identities=12% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHH
Q 027325 59 LLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEI 138 (225)
Q Consensus 59 ~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~~~aLK~i~~~~~id~Ve~lmde~~e~~e~~~EI 138 (225)
+.+++||+.+ .|.++...++-|+.++..+.+..--..++..=+....|...+...+++.+ .+.+.|
T Consensus 561 ~~v~~rR~~~--~L~k~~~r~hilegl~~a~~~iD~vI~iIr~s~~~~~a~~~L~~~f~lse------------~Qa~aI 626 (692)
T 2xcs_B 561 KTVVRRRTQY--NLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSE------------KQAQAI 626 (692)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHTCCH------------HHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHhhHHHHHHhHHHHHHHHHhCCCHHHHHHHHhhccCCCH------------HHHHHH
Q ss_pred HHHhcccCCCCCHHHHHHHHHHHHHHHhh
Q 027325 139 NAILGEKLSAEDEEEILAEFDNLEAQLAV 167 (225)
Q Consensus 139 ~e~Ls~~~~~~DedELe~EL~~L~~e~~~ 167 (225)
-+|==..+...+-+.|.+|+++|..++..
T Consensus 627 L~m~L~rLt~le~~kl~~E~~~l~~~i~~ 655 (692)
T 2xcs_B 627 LDMRLRRLTGLERDKIEAEYNELLNYISE 655 (692)
T ss_dssp HTCBGGGGSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHhhhHHHHHHHHHHHHHHHHHHH
No 63
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=20.05 E-value=5.1e+02 Score=23.71 Aligned_cols=88 Identities=15% Similarity=0.302 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Q 027325 59 LLALKKKRAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSG---TNAIKAIQSEINLEDVQKLMDDTEEAKAYQ 135 (225)
Q Consensus 59 ~~~Lr~KK~~e~~L~~~~~~l~nLe~~~~~iE~a~~n~~vv~alk~~---~~aLK~i~~~~~id~Ve~lmde~~e~~e~~ 135 (225)
+.+++||+.| .|.+....++-|+.++..+.+.- .|+..++.+ ..+...+...+++.++
T Consensus 340 ~~~~~rR~~~--~L~k~~~r~hilegl~~a~~~iD---~vI~iIr~s~~~~~a~~~L~~~f~lse~-------------- 400 (470)
T 3ilw_A 340 LDVIVRRTTY--RLRKANERAHILRGLVKALDALD---EVIALIRASETVDIARAGLIELLDIDEI-------------- 400 (470)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTHH---HHHHHHHHCSSHHHHHHHHHHHHTCCHH--------------
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhCCCHHHHHHHHHHhcCCCHH--------------
Confidence 3455555544 45666666777777666653322 233333333 3444344333221111
Q ss_pred HHHHHHhccc---CCCCCHHHHHHHHHHHHHHHh
Q 027325 136 DEINAILGEK---LSAEDEEEILAEFDNLEAQLA 166 (225)
Q Consensus 136 ~EI~e~Ls~~---~~~~DedELe~EL~~L~~e~~ 166 (225)
..+.+|.-. +...+.+.|.+|+++|..++.
T Consensus 401 -Qa~aIl~mrL~rLt~le~~kl~~E~~~l~~~i~ 433 (470)
T 3ilw_A 401 -QAQAILDMQLRRLAALERQRIIDDLAKIEAEIA 433 (470)
T ss_dssp -HHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 222333322 345677888888888887653
Done!