BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>027326
MTPRRRTIMTSLLLLLLSLPSISLAYRPGDIVPMSKMSQYHNSRTVWHDVIGKHCPIFAV
NREALIPIAKPTGFTGADPVKISFQVGREKFRVPWLFVINRKSSQVPMIDVHLRYSGNDL
LGVTAKIVDMPQRYVEIHPDLPKYFWQPESWPKHVLIRYTWEEQSEIDVASGFYVLFASG
KSLYSNQGSKWYWLLYRALISHSCCVNFLASRFCRNFLCQLHLTS

High Scoring Gene Products

Symbol, full name Information P value
NPU
AT3G51610 		protein from Arabidopsis thaliana 9.4e-66

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027326
        (225 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2081870 - symbol:NPU "AT3G51610" species:3702 ...   669  9.4e-66   1


>TAIR|locus:2081870 [details] [associations]
            symbol:NPU "AT3G51610" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0006979
            "response to oxidative stress" evidence=IMP] [GO:0005886 "plasma
            membrane" evidence=IDA] [GO:0009555 "pollen development"
            evidence=IMP] GO:GO:0005886 EMBL:CP002686 GenomeReviews:BA000014_GR
            GO:GO:0006979 GO:GO:0009555 EMBL:AY136426 EMBL:BT006266
            EMBL:AK227141 IPI:IPI00537983 RefSeq:NP_566953.1 UniGene:At.22458
            PaxDb:Q8L776 PRIDE:Q8L776 EnsemblPlants:AT3G51610.1 GeneID:824324
            KEGG:ath:AT3G51610 TAIR:At3g51610 eggNOG:NOG258591
            HOGENOM:HOG000030857 InParanoid:Q8L776 OMA:VLVRYTW PhylomeDB:Q8L776
            ProtClustDB:CLSN2689115 ArrayExpress:Q8L776 Genevestigator:Q8L776
            Uniprot:Q8L776
        Length = 230

 Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
 Identities = 118/155 (76%), Positives = 133/155 (85%)

Query:    25 AYRPGDIVPMSKMSQYHNSRTVWHDVIGKHCPIFAVNREALIPIAKPTGFTGADPVKISF 84
             AYRPGDIV MSKM QYH+SRT WHDVIGKHCPIFAVNRE LIPIAKP G+TG DP KI F
Sbjct:    33 AYRPGDIVRMSKMGQYHSSRTTWHDVIGKHCPIFAVNREVLIPIAKPIGYTGTDPYKIKF 92

Query:    85 QVGREKFRVPWLFVINRKSSQVPMIDVHLRYSGNDLLGVTAKIVDMPQRYVEIHPDLPKY 144
             QVG EKF + WL VINRKSS+VPMIDV+LRYSG DLLGVTA+++DMP  Y+  HP++ K 
Sbjct:    93 QVGSEKFLIHWLLVINRKSSEVPMIDVNLRYSGGDLLGVTAQVIDMPHSYLNTHPEIRKQ 152

Query:   145 FWQPESWPKHVLIRYTWEEQSEIDVASGFYVLFAS 179
             FW P+ WPKHVL+RYTW+EQSEIDV+SGFYVLF S
Sbjct:   153 FWDPQHWPKHVLVRYTWKEQSEIDVSSGFYVLFGS 187


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.138   0.458    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      225       211   0.00081  112 3  11 22  0.43    32
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  617 (66 KB)
  Total size of DFA:  208 KB (2115 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.12u 0.11s 18.23t   Elapsed:  00:00:01
  Total cpu time:  18.12u 0.11s 18.23t   Elapsed:  00:00:01
  Start:  Fri May 10 09:51:51 2013   End:  Fri May 10 09:51:52 2013

Back to top