BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027326
         (225 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q7XKC0|ANM61_ORYSJ Probable protein arginine N-methyltransferase 6.1 OS=Oryza sativa
           subsp. japonica GN=PRMT6.1 PE=2 SV=2
          Length = 391

 Score = 31.6 bits (70), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 26/106 (24%)

Query: 9   MTSLLLLLLSLPSISLA----YRPGDIV----------PMSKMSQYHNSRTVWHDVIGKH 54
           M  +LL    LPS+  A     +PG ++          P++   +Y  S   W DV G  
Sbjct: 158 MGYMLLYESMLPSVLFARDKWLKPGGLILPSHATLFMAPITNSERYEGSVDFWSDVYG-- 215

Query: 55  CPIFAVNREALIPIAKPTGFTGADPVKISFQVGREKFRVPWLFVIN 100
                +N  AL+P+AK   FT  +P   S ++   +  + W FV+ 
Sbjct: 216 -----INMSALVPLAKK--FTSEEP---SIEIIGGENVLSWPFVVK 251


>sp|A2XYY8|ANM61_ORYSI Probable protein arginine N-methyltransferase 6.1 OS=Oryza sativa
           subsp. indica GN=PRMT6.1 PE=2 SV=1
          Length = 379

 Score = 31.6 bits (70), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 26/106 (24%)

Query: 9   MTSLLLLLLSLPSISLA----YRPGDIV----------PMSKMSQYHNSRTVWHDVIGKH 54
           M  +LL    LPS+  A     +PG ++          P++   +Y  S   W DV G  
Sbjct: 158 MGYMLLYESMLPSVLFARDKWLKPGGLILPSHATLFMAPITNSERYEGSVDFWSDVYG-- 215

Query: 55  CPIFAVNREALIPIAKPTGFTGADPVKISFQVGREKFRVPWLFVIN 100
                +N  AL+P+AK   FT  +P   S ++   +  + W FV+ 
Sbjct: 216 -----INMSALVPLAK--KFTSEEP---SIEIIGGENVLSWPFVVK 251


>sp|Q67MD4|ADDB_SYMTH ATP-dependent helicase/deoxyribonuclease subunit B
           OS=Symbiobacterium thermophilum (strain T / IAM 14863)
           GN=addB PE=3 SV=1
          Length = 1165

 Score = 31.2 bits (69), Expect = 5.9,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 113 LRYSGNDLLGVTAKIVDMPQRYVEIHPDLPKYFWQPESWPKHVLIRYTWEEQS 165
            RY   DL GV+   +D+ + YV  H    + + Q E W    L RYT EE +
Sbjct: 405 FRYLKTDLTGVSRAEIDLLENYVIEHGIRGRAWQQQEPW--QYLRRYTLEEDA 455


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.139    0.451 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,218,725
Number of Sequences: 539616
Number of extensions: 3603445
Number of successful extensions: 9143
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 9143
Number of HSP's gapped (non-prelim): 5
length of query: 225
length of database: 191,569,459
effective HSP length: 113
effective length of query: 112
effective length of database: 130,592,851
effective search space: 14626399312
effective search space used: 14626399312
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)