Query 027326
Match_columns 225
No_of_seqs 26 out of 28
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 08:16:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027326.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027326hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10030 hypothetical protein; 52.5 10 0.00023 32.6 2.1 27 9-35 4-30 (197)
2 KOG1277 Endosomal membrane pro 50.9 90 0.002 32.0 8.5 21 107-127 160-180 (593)
3 PF10447 EXOSC1: Exosome compo 40.4 13 0.00029 28.5 0.8 12 22-33 65-76 (82)
4 PF04327 DUF464: Protein of un 35.9 49 0.0011 25.5 3.3 19 108-126 1-19 (103)
5 PRK11331 5-methylcytosine-spec 34.1 1.3E+02 0.0028 29.9 6.6 90 75-164 28-126 (459)
6 PF14041 Lipoprotein_21: LppP/ 30.6 1E+02 0.0023 23.2 4.3 12 115-126 52-63 (89)
7 PF14317 YcxB: YcxB-like prote 30.1 1.3E+02 0.0028 19.4 4.2 32 155-186 13-44 (62)
8 KOG0100 Molecular chaperones G 29.6 1.3E+02 0.0028 30.8 5.8 66 61-126 445-521 (663)
9 TIGR00022 uncharacterized prot 29.3 1.2E+02 0.0025 24.6 4.6 59 106-180 67-128 (142)
10 PF11875 DUF3395: Domain of un 27.1 55 0.0012 27.3 2.5 21 144-164 113-136 (151)
11 COG2868 Predicted ribosomal pr 26.7 77 0.0017 25.9 3.2 19 108-126 1-19 (109)
12 PRK14553 hypothetical protein; 25.6 97 0.0021 24.3 3.5 19 108-126 1-19 (108)
13 PF12381 Peptidase_C3G: Tungro 24.2 43 0.00094 30.7 1.4 31 123-154 87-117 (231)
14 smart00634 BID_1 Bacterial Ig- 22.7 1.3E+02 0.0027 22.2 3.5 27 96-122 24-50 (92)
15 PF09224 DUF1961: Domain of un 22.4 1.2E+02 0.0027 27.6 3.9 34 144-181 53-86 (218)
16 PF11767 SET_assoc: Histone ly 21.6 28 0.0006 25.8 -0.2 25 153-179 18-42 (66)
17 COG5616 Predicted integral mem 21.6 1.6E+02 0.0034 25.5 4.3 40 92-132 58-115 (152)
18 smart00095 TR_THY Transthyreti 20.0 1.2E+02 0.0026 25.0 3.1 36 76-118 59-94 (121)
No 1
>PRK10030 hypothetical protein; Provisional
Probab=52.48 E-value=10 Score=32.60 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=20.4
Q ss_pred HHHHHHHHhhhhhhhccCCCCCccccc
Q 027326 9 MTSLLLLLLSLPSISLAYRPGDIVPMS 35 (225)
Q Consensus 9 ~~llllll~~~~~~~~ayr~GDiVp~s 35 (225)
+.+++++|.+++..+..+++||+|=.+
T Consensus 4 ~~~~~~~~~~~~~~~~~l~~GDlif~~ 30 (197)
T PRK10030 4 RLLILSLLVSVPAFAWQPQTGDIIFQI 30 (197)
T ss_pred hhHHHHHHHhchhhhcCCCCCCEEEEe
Confidence 345556677788888899999999654
No 2
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.94 E-value=90 Score=31.96 Aligned_cols=21 Identities=14% Similarity=0.392 Sum_probs=19.4
Q ss_pred CeEEEEEEEeCCeEeeeeeeE
Q 027326 107 PMIDVHLRYSGNDLLGVTAKI 127 (225)
Q Consensus 107 pmIDv~L~ySg~dLlgV~AkV 127 (225)
.+.++++-|.||.|++|...+
T Consensus 160 thk~f~i~yn~drii~vnlt~ 180 (593)
T KOG1277|consen 160 THKKFEIGYNGDRIIDVNLTT 180 (593)
T ss_pred EeeeEEEeecCceEEEEEeee
Confidence 589999999999999999985
No 3
>PF10447 EXOSC1: Exosome component EXOSC1/CSL4; InterPro: IPR019495 The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions []. The proteins in this entry are components of the exosome 3'->5' exoribonuclease complex. They do not have exonuclease activity, but are required for the 3'-processing of the 7S pre-RNA to the mature 5.8S rRNA and for mRNA decay [, ].; PDB: 2NN6_I.
Probab=40.40 E-value=13 Score=28.48 Aligned_cols=12 Identities=50% Similarity=0.897 Sum_probs=8.4
Q ss_pred hhccCCCCCccc
Q 027326 22 ISLAYRPGDIVP 33 (225)
Q Consensus 22 ~~~ayr~GDiVp 33 (225)
+...|||||||+
T Consensus 65 ~~~~FrpGDIVr 76 (82)
T PF10447_consen 65 MYDCFRPGDIVR 76 (82)
T ss_dssp GGGT--SSSEEE
T ss_pred HHhccCCCCEEE
Confidence 577899999996
No 4
>PF04327 DUF464: Protein of unknown function (DUF464); InterPro: IPR007422 This entry is represented by Bacteriophage Cp-1, Orf13. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2IDL_A 2G0J_D 2G0I_B 2P92_B 1S12_C.
Probab=35.86 E-value=49 Score=25.48 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=18.0
Q ss_pred eEEEEEEEeCCeEeeeeee
Q 027326 108 MIDVHLRYSGNDLLGVTAK 126 (225)
Q Consensus 108 mIDv~L~ySg~dLlgV~Ak 126 (225)
||.|.+++.+|.+.+++++
T Consensus 1 MI~v~i~~~~~~i~~~~v~ 19 (103)
T PF04327_consen 1 MIKVTIYKKNGQIIGFEVS 19 (103)
T ss_dssp SEEEEEEECTSEEEEEEEE
T ss_pred CEEEEEEECCCeEEEEEEE
Confidence 8999999999999999987
No 5
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=34.08 E-value=1.3e+02 Score=29.92 Aligned_cols=90 Identities=21% Similarity=0.347 Sum_probs=56.4
Q ss_pred CCCCceeEEEEecCCcc-eeceEEEecCCCC-CcCeEEEEEEEeCCeEeeeeeeE--eeCChhhhh----hCCCCccccc
Q 027326 75 TGADPVKISFQVGREKF-RVPWLFVINRKSS-QVPMIDVHLRYSGNDLLGVTAKI--VDMPQRYVE----IHPDLPKYFW 146 (225)
Q Consensus 75 t~~D~YKIsFsF~~dkf-~TpWL~vi~rks~-~vpmIDv~L~ySg~dLlgV~AkV--vd~p~~y~e----~H~~l~~~f~ 146 (225)
+.-+.|+++.|||.-++ .+|||-+.|.+-+ +=-.--|=|.|...+-+=++..+ -..|++-.+ +++-+.+-|-
T Consensus 28 ~~~~~~~vk~s~g~g~~a~vpw~a~~~~~~t~q~giy~vyl~~~d~~~~~l~~~~~~t~~~~~~~~~~~~~~~~i~~~~~ 107 (459)
T PRK11331 28 TSYRNLRVKLSFGYGNFTSIPWFAFLGEGQEASNGIYPVILYYKDFDELVLAYGISDTNEPHAQWQFSSDIPKTIAEYFQ 107 (459)
T ss_pred cccCceEEEEecCCCCcccCceEEeecCCceeecCeeEEEEEeccCCEEEEEEecCCCccHHHHHHHHhhHHHHHHHHHh
Confidence 67789999999999988 4899999999844 33445567778777765444321 122232221 3333444444
Q ss_pred C-CCCCCCeEEEEEEEEEe
Q 027326 147 Q-PESWPKHVLIRYTWEEQ 164 (225)
Q Consensus 147 d-~~~WPKHvLV~Y~W~e~ 164 (225)
. -..-||+-=-.|.-..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~ 126 (459)
T PRK11331 108 ATSGVYPKKYGQSYYACSQ 126 (459)
T ss_pred cccCCCccccCceeEeecc
Confidence 4 45568877666655444
No 6
>PF14041 Lipoprotein_21: LppP/LprE lipoprotein
Probab=30.63 E-value=1e+02 Score=23.18 Aligned_cols=12 Identities=25% Similarity=0.266 Sum_probs=6.4
Q ss_pred EeCCeEeeeeee
Q 027326 115 YSGNDLLGVTAK 126 (225)
Q Consensus 115 ySg~dLlgV~Ak 126 (225)
.++++-+.|+.+
T Consensus 52 ~~~~~~V~V~Y~ 63 (89)
T PF14041_consen 52 RSTDDTVTVQYR 63 (89)
T ss_pred eeCCCEEEEEEE
Confidence 455555555555
No 7
>PF14317 YcxB: YcxB-like protein
Probab=30.13 E-value=1.3e+02 Score=19.40 Aligned_cols=32 Identities=9% Similarity=0.305 Sum_probs=26.2
Q ss_pred EEEEEEEEEeEeeeecceeEEEeecceeEEEe
Q 027326 155 VLIRYTWEEQSEIDVASGFYVLFASGKSLYSN 186 (225)
Q Consensus 155 vLV~Y~W~e~seiDv~sGlyVLF~sgl~iy~L 186 (225)
--.+|.|++...+-.+...|+|+..+-..+++
T Consensus 13 ~~~~~~w~~i~~v~e~~~~~~l~~~~~~~~~i 44 (62)
T PF14317_consen 13 GSSRIPWSDIKKVVETKDYFYLYLGKNQAFII 44 (62)
T ss_pred eEEEEEchheEEEEEeCCEEEEEECCCeEEEE
Confidence 34689999999999999999999888755554
No 8
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=29.65 E-value=1.3e+02 Score=30.84 Aligned_cols=66 Identities=27% Similarity=0.335 Sum_probs=40.5
Q ss_pred cceEEeeccccCCCCCCCce--eEEEE-ecCCcceece--------EEEecCCCCCcCeEEEEEEEeCCeEeeeeee
Q 027326 61 NREALIPIAKPTGFTGADPV--KISFQ-VGREKFRVPW--------LFVINRKSSQVPMIDVHLRYSGNDLLGVTAK 126 (225)
Q Consensus 61 dr~V~vpipKp~g~t~~D~Y--KIsFs-F~~dkf~TpW--------L~vi~rks~~vpmIDv~L~ySg~dLlgV~Ak 126 (225)
.|.-.||.-|++-|+.+.+- .++.| |.|||-.|-= |+=|.--.--||+|+|+|--.-+.|+-|+|+
T Consensus 445 ~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIEVtFevDangiL~VsAe 521 (663)
T KOG0100|consen 445 PRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTFEVDANGILQVSAE 521 (663)
T ss_pred cCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCccEEEEEEEccCceEEEEee
Confidence 34456788888866544322 12222 4556554432 1112222235999999999999999999997
No 9
>TIGR00022 uncharacterized protein, YhcH/YjgK/YiaL family. This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK.
Probab=29.27 E-value=1.2e+02 Score=24.59 Aligned_cols=59 Identities=15% Similarity=0.389 Sum_probs=37.9
Q ss_pred cCeEEEEEEEeCCeEeeeeeeEeeCC--hhhhhhCCCCcccccCCCCCCCeEEEEE-EEEEeEeeeecceeEEEeecc
Q 027326 106 VPMIDVHLRYSGNDLLGVTAKIVDMP--QRYVEIHPDLPKYFWQPESWPKHVLIRY-TWEEQSEIDVASGFYVLFASG 180 (225)
Q Consensus 106 vpmIDv~L~ySg~dLlgV~AkVvd~p--~~y~e~H~~l~~~f~d~~~WPKHvLV~Y-~W~e~seiDv~sGlyVLF~sg 180 (225)
=.+|||++.-+|.+..|++.....+. ..|-+. |++. -| .-...+.+....|-|++|.=+
T Consensus 67 r~YiDIq~~l~G~E~i~~~~~~~~~~~~~~y~~~---------------~D~~-f~~~~~~~~~i~l~~G~faiffP~ 128 (142)
T TIGR00022 67 HRYLDIQLLLRGEENIEVGTTPPNLSVYEDYLEE---------------DDIQ-LCADIDDEQTVILKPGMFAVFYPG 128 (142)
T ss_pred hheEEEEEeecceEEEEEecCccccccccCCCcC---------------CCEE-eccCCCCceEEEeCCCcEEEECCC
Confidence 46899999999999999975423332 233221 3333 23 234557778888888888643
No 10
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=27.13 E-value=55 Score=27.28 Aligned_cols=21 Identities=29% Similarity=0.642 Sum_probs=18.2
Q ss_pred cccCCC---CCCCeEEEEEEEEEe
Q 027326 144 YFWQPE---SWPKHVLIRYTWEEQ 164 (225)
Q Consensus 144 ~f~d~~---~WPKHvLV~Y~W~e~ 164 (225)
-||||- .=||.++|+|+|+.+
T Consensus 113 GF~DP~p~~ge~K~L~V~Y~f~g~ 136 (151)
T PF11875_consen 113 GFYDPCPFLGEPKQLRVRYRFRGK 136 (151)
T ss_pred CCCCCccccCCccEEEEEEEECCE
Confidence 599998 569999999999864
No 11
>COG2868 Predicted ribosomal protein [Translation, ribosomal structure and biogenesis]
Probab=26.73 E-value=77 Score=25.92 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=18.1
Q ss_pred eEEEEEEEeCCeEeeeeee
Q 027326 108 MIDVHLRYSGNDLLGVTAK 126 (225)
Q Consensus 108 mIDv~L~ySg~dLlgV~Ak 126 (225)
||++.+++-+|.|++++|+
T Consensus 1 MI~v~i~rk~~~i~s~~~s 19 (109)
T COG2868 1 MIKVVIKRKNGQIVSLTAS 19 (109)
T ss_pred CeEEEEEecCCeEEEEEEe
Confidence 8999999999999999998
No 12
>PRK14553 hypothetical protein; Provisional
Probab=25.60 E-value=97 Score=24.25 Aligned_cols=19 Identities=21% Similarity=0.447 Sum_probs=16.9
Q ss_pred eEEEEEEEeCCeEeeeeee
Q 027326 108 MIDVHLRYSGNDLLGVTAK 126 (225)
Q Consensus 108 mIDv~L~ySg~dLlgV~Ak 126 (225)
||.+++++.+|.|.+.+++
T Consensus 1 MI~v~i~~~~~~i~~~~i~ 19 (108)
T PRK14553 1 MIKVTIKRKNGQIISFTMS 19 (108)
T ss_pred CEEEEEEEeCCEEEEEEEE
Confidence 8999998888999998877
No 13
>PF12381 Peptidase_C3G: Tungro spherical virus-type peptidase; InterPro: IPR024387 This entry represents a rice tungro spherical waikavirus-type peptidase that belongs to MEROPS peptidase family C3G. It is a picornain 3C-type protease, and is responsible for the self-cleavage of the positive single-stranded polyproteins of a number of plant viral genomes. The location of the protease activity of the polyprotein is at the C-terminal end, adjacent and N-terminal to the putative RNA polymerase [, ].
Probab=24.15 E-value=43 Score=30.72 Aligned_cols=31 Identities=32% Similarity=0.405 Sum_probs=28.2
Q ss_pred eeeeEeeCChhhhhhCCCCcccccCCCCCCCe
Q 027326 123 VTAKIVDMPQRYVEIHPDLPKYFWQPESWPKH 154 (225)
Q Consensus 123 V~AkVvd~p~~y~e~H~~l~~~f~d~~~WPKH 154 (225)
..+-|.|+| ..+-.|.++.|.|-+.+.|+|.
T Consensus 87 ~d~vl~~lg-n~V~~~~Di~k~f~t~ed~~~~ 117 (231)
T PF12381_consen 87 QDAVLWDLG-NSVCPHIDITKHFPTAEDWSKF 117 (231)
T ss_pred eeEEEEecC-CccCCccCHHHhCCChhHhhhc
Confidence 667789999 7899999999999999999985
No 14
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=22.72 E-value=1.3e+02 Score=22.21 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=22.4
Q ss_pred EEEecCCCCCcCeEEEEEEEeCCeEee
Q 027326 96 LFVINRKSSQVPMIDVHLRYSGNDLLG 122 (225)
Q Consensus 96 L~vi~rks~~vpmIDv~L~ySg~dLlg 122 (225)
++|.|+++..+|-.+|+|..+|+..++
T Consensus 24 v~v~D~~Gnpv~~~~V~f~~~~~~~~~ 50 (92)
T smart00634 24 ATVTDANGNPVAGQEVTFTTPSGGALT 50 (92)
T ss_pred EEEECCCCCCcCCCEEEEEECCCceee
Confidence 457899999999999999999887444
No 15
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=22.39 E-value=1.2e+02 Score=27.60 Aligned_cols=34 Identities=26% Similarity=0.668 Sum_probs=25.5
Q ss_pred cccCCCCCCCeEEEEEEEEEeEeeeecceeEEEeecce
Q 027326 144 YFWQPESWPKHVLIRYTWEEQSEIDVASGFYVLFASGK 181 (225)
Q Consensus 144 ~f~d~~~WPKHvLV~Y~W~e~seiDv~sGlyVLF~sgl 181 (225)
-||.|+..|.+|.|.|-+.-..| -||=+||++.-
T Consensus 53 VlW~p~~Fp~~i~IsweF~p~~e----pGLamlfF~Aa 86 (218)
T PF09224_consen 53 VLWCPEVFPDDIRISWEFTPLAE----PGLAMLFFAAA 86 (218)
T ss_dssp EEE-SS-B-SSEEEEEEEEEEE-----SEEEEEEEEEE
T ss_pred EEECcccCCCCeEEEEEEEEcCC----CCEEEEEeecc
Confidence 48999999999999988877766 79999998754
No 16
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=21.64 E-value=28 Score=25.82 Aligned_cols=25 Identities=36% Similarity=0.868 Sum_probs=19.8
Q ss_pred CeEEEEEEEEEeEeeeecceeEEEeec
Q 027326 153 KHVLIRYTWEEQSEIDVASGFYVLFAS 179 (225)
Q Consensus 153 KHvLV~Y~W~e~seiDv~sGlyVLF~s 179 (225)
|.-|=+|.|+..- +-.+|+||.|-.
T Consensus 18 K~~Lr~y~~~~I~--~d~tGfYIvF~~ 42 (66)
T PF11767_consen 18 KKRLRKYRWDRIR--DDRTGFYIVFND 42 (66)
T ss_pred HHHHhcCCcceEE--ecCCEEEEEECC
Confidence 4456689999887 568999999964
No 17
>COG5616 Predicted integral membrane protein [Function unknown]
Probab=21.61 E-value=1.6e+02 Score=25.52 Aligned_cols=40 Identities=38% Similarity=0.504 Sum_probs=30.9
Q ss_pred eeceEEEecCCCCCc--------C----------eEEEEEEEeCCeEeeeeeeEeeCCh
Q 027326 92 RVPWLFVINRKSSQV--------P----------MIDVHLRYSGNDLLGVTAKIVDMPQ 132 (225)
Q Consensus 92 ~TpWL~vi~rks~~v--------p----------mIDv~L~ySg~dLlgV~AkVvd~p~ 132 (225)
..+||.||.||+++. + .++=..|++||.+. |+|++||+-.
T Consensus 58 r~~~l~VIArnssft~kgka~dv~~v~~~Lgv~YvleGsvRr~g~RvR-vtaqLvda~~ 115 (152)
T COG5616 58 RFRELFVIARNSSFTYKGKAVDVREVGEELGVRYVLEGSVRRAGGRVR-VTAQLVDASS 115 (152)
T ss_pred hccCceEEEccceeeccCCCCCHHHHHHHhCCcEEEeeeEeecCCEEE-EEEEEEeccC
Confidence 358999999987732 1 35667888998875 9999999865
No 18
>smart00095 TR_THY Transthyretin.
Probab=20.05 E-value=1.2e+02 Score=25.03 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=27.5
Q ss_pred CCCceeEEEEecCCcceeceEEEecCCCCCcCeEEEEEEEeCC
Q 027326 76 GADPVKISFQVGREKFRVPWLFVINRKSSQVPMIDVHLRYSGN 118 (225)
Q Consensus 76 ~~D~YKIsFsF~~dkf~TpWL~vi~rks~~vpmIDv~L~ySg~ 118 (225)
..-.|||.|..+ +-|.. .+..++.|.|+|.|.-++.
T Consensus 59 ~~G~Y~l~F~tg-~Yf~~------~~~~~F~p~V~V~F~i~d~ 94 (121)
T smart00095 59 VEGLYKVEFDTK-SYWKA------LGISPFHEYADVVFTANDS 94 (121)
T ss_pred cceEEEEEEehh-HhHhh------cCCCCCCceEEEEEEECCC
Confidence 346899999987 66652 3557899999999987653
Done!