Query 027326
Match_columns 225
No_of_seqs 26 out of 28
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 13:30:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027326.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027326hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n8e_A Stress-70 protein, mito 40.2 26 0.00089 28.6 3.9 22 105-126 99-120 (182)
2 3ssc_A ECOKMCRBC, 5-methylcyto 39.6 66 0.0023 27.1 6.2 55 73-127 25-82 (170)
3 3h0x_A 78 kDa glucose-regulate 35.8 50 0.0017 25.8 4.7 22 105-126 79-100 (152)
4 3dqg_A Heat shock 70 kDa prote 35.2 36 0.0012 26.8 3.8 22 105-126 79-100 (151)
5 4e81_A Chaperone protein DNAK; 32.6 28 0.00097 28.9 2.9 24 103-126 78-101 (219)
6 3dob_A Heat shock 70 kDa prote 31.1 45 0.0015 26.2 3.7 23 104-126 78-100 (152)
7 3nrp_A Periplasmic protein-pro 30.2 55 0.0019 27.2 4.2 83 23-117 56-151 (160)
8 3d2f_A Heat shock protein homo 27.4 76 0.0026 30.3 5.3 65 64-128 423-497 (675)
9 1q5l_A Chaperone protein DNAK; 25.0 79 0.0027 24.2 4.1 23 105-127 96-118 (135)
10 2idl_A Hypothetical protein; c 21.0 70 0.0024 24.3 3.0 20 107-126 3-23 (117)
No 1
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens}
Probab=40.23 E-value=26 Score=28.58 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=20.7
Q ss_pred CcCeEEEEEEEeCCeEeeeeee
Q 027326 105 QVPMIDVHLRYSGNDLLGVTAK 126 (225)
Q Consensus 105 ~vpmIDv~L~ySg~dLlgV~Ak 126 (225)
-+|.|+|+|.+.-+-|+-|+|+
T Consensus 99 G~~~IeVtf~iD~nGiL~VsA~ 120 (182)
T 3n8e_A 99 GVPQIEVTFDIDANGIVHVSAK 120 (182)
T ss_dssp TCSCEEEEEEECTTCCEEEEEE
T ss_pred CCeeEEEEEEEecCCEEEEEEE
Confidence 4689999999999999999998
No 2
>3ssc_A ECOKMCRBC, 5-methylcytosine-specific restriction enzyme B; protein-DNA complex; HET: DNA 5CM; 2.10A {Escherichia coli} PDB: 3ssd_A* 3sse_A*
Probab=39.56 E-value=66 Score=27.13 Aligned_cols=55 Identities=20% Similarity=0.395 Sum_probs=38.3
Q ss_pred CCCCC-CceeEEEEecCCcc-eeceEEEecCCCCCcCeE-EEEEEEeCCeEeeeeeeE
Q 027326 73 GFTGA-DPVKISFQVGREKF-RVPWLFVINRKSSQVPMI-DVHLRYSGNDLLGVTAKI 127 (225)
Q Consensus 73 g~t~~-D~YKIsFsF~~dkf-~TpWL~vi~rks~~vpmI-Dv~L~ySg~dLlgV~AkV 127 (225)
+|.+. ..|+|..|||-.++ .+|||-+.+++.+.-.=| -|=|.|++.+-+=++.-|
T Consensus 25 ~y~~~~~~~~Vk~S~GqGn~A~IPWia~~~~~~tt~~GiY~VyLf~~d~~~LyLs~Gv 82 (170)
T 3ssc_A 25 DYPTSYRNLRVKLSFGYGNFTSIPWFAFLGEGQEASNGIYPVILYYKDFDELVLAYGI 82 (170)
T ss_dssp SSCSEETTEEEEEEEESSSEEEEEEEEEECTTCCSSSSEEEEEEEEGGGTEEEEEEEE
T ss_pred hhHhhcCCeEEEEeccCCccccCcEEEEEcCCcceecceEEEEEEEcCCCEEEEEEEe
Confidence 45444 78999999998887 699999999985444444 445566666655555443
No 3
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Probab=35.83 E-value=50 Score=25.84 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=20.6
Q ss_pred CcCeEEEEEEEeCCeEeeeeee
Q 027326 105 QVPMIDVHLRYSGNDLLGVTAK 126 (225)
Q Consensus 105 ~vpmIDv~L~ySg~dLlgV~Ak 126 (225)
-.|.|+|+|.+.-+-|+-|+|+
T Consensus 79 G~~~I~Vtf~iD~nGiL~V~a~ 100 (152)
T 3h0x_A 79 GVPQIEVTFALDANGILKVSAT 100 (152)
T ss_dssp TCSCEEEEEEECTTSEEEEEEE
T ss_pred CCceEEEEEEEcCCCEEEEEEE
Confidence 4689999999999999999998
No 4
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans}
Probab=35.20 E-value=36 Score=26.79 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=20.6
Q ss_pred CcCeEEEEEEEeCCeEeeeeee
Q 027326 105 QVPMIDVHLRYSGNDLLGVTAK 126 (225)
Q Consensus 105 ~vpmIDv~L~ySg~dLlgV~Ak 126 (225)
-+|.|+|+|.+.-+-|+-|+|+
T Consensus 79 G~~~IeVtf~iD~nGiL~Vsa~ 100 (151)
T 3dqg_A 79 GVPQVEVTFDIDANGIVNVSAR 100 (151)
T ss_dssp TCSCEEEEEEECTTSEEEEEEE
T ss_pred CCcEEEEEEEeccCcEEEEEEE
Confidence 4699999999999999999998
No 5
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=32.64 E-value=28 Score=28.93 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.6
Q ss_pred CCCcCeEEEEEEEeCCeEeeeeee
Q 027326 103 SSQVPMIDVHLRYSGNDLLGVTAK 126 (225)
Q Consensus 103 s~~vpmIDv~L~ySg~dLlgV~Ak 126 (225)
..-+|.|+|+|.+.-+-|+-|+|+
T Consensus 78 p~G~~~IeVtf~iD~nGiL~V~a~ 101 (219)
T 4e81_A 78 PRGMPQIEVTFDIDADGILHVSAK 101 (219)
T ss_dssp STTCSCEEEEEEECTTCCEEEEEE
T ss_pred CCCCceEEEEEEeCCCCCEeeeee
Confidence 345799999999999999999998
No 6
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans}
Probab=31.06 E-value=45 Score=26.25 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=21.0
Q ss_pred CCcCeEEEEEEEeCCeEeeeeee
Q 027326 104 SQVPMIDVHLRYSGNDLLGVTAK 126 (225)
Q Consensus 104 ~~vpmIDv~L~ySg~dLlgV~Ak 126 (225)
.-+|.|+|+|.+.-+-|+-|+|+
T Consensus 78 ~G~~~IeVtf~iD~nGiL~Vsa~ 100 (152)
T 3dob_A 78 RGVPQIEVTFNIDANGILNVSAE 100 (152)
T ss_dssp TTCCCEEEEEEECTTCCEEEEEE
T ss_pred CCCceEEEEEEeCCCCeEEEEEE
Confidence 34699999999999999999998
No 7
>3nrp_A Periplasmic protein-probably involved in high-AFF transport; immunoglobulin-like fold, iron transporter, copper binding; 1.60A {Escherichia coli} PDB: 3nrq_A
Probab=30.21 E-value=55 Score=27.24 Aligned_cols=83 Identities=12% Similarity=0.215 Sum_probs=51.8
Q ss_pred hccCCCCCccc--------cccceeeccCcceeeccCCCCCCcccccceEEeeccccCCCCCCCceeEEEEecCCcceec
Q 027326 23 SLAYRPGDIVP--------MSKMSQYHNSRTVWHDVIGKHCPIFAVNREALIPIAKPTGFTGADPVKISFQVGREKFRVP 94 (225)
Q Consensus 23 ~~ayr~GDiVp--------~sr~~QfH~sRT~WhDl~grHcP~Fgvdr~V~vpipKp~g~t~~D~YKIsFsF~~dkf~Tp 94 (225)
.++|-.||.|| +.+.+..-.+.|-|.-+. +.=|.||-|-+ +.+...|+++|.++..--. .
T Consensus 56 ~~Gf~~G~~vPyL~v~y~i~~~~~~~v~~g~~mPMvA-~dGpHYG~Nvk----------L~G~G~Y~v~~~I~pPs~~-~ 123 (160)
T 3nrp_A 56 KNGFGAGEWIPYLTISYTLVNNDTGEKQEGTFMPMVA-SDGPHYGANIK----------MMGVGNYKVTYHIEPPSKA-G 123 (160)
T ss_dssp SSSCCTTCBCCSCEEEEEEEETTTCCEEEEECEEEEE-TTEEEEEEEEC----------CCSSEEEEEEEEEECGGGG-T
T ss_pred cCcCcCCCCCCCceeEEEEEeCCCCeEEEeeccceec-CCCCccccccC----------CCCCccEEEEEEECCCccc-c
Confidence 45688899999 323332333455566665 88888887743 2456889999999865311 3
Q ss_pred eEEEecCCC-----CCcCeEEEEEEEeC
Q 027326 95 WLFVINRKS-----SQVPMIDVHLRYSG 117 (225)
Q Consensus 95 WL~vi~rks-----~~vpmIDv~L~ySg 117 (225)
|..-.|+-+ .+.=-.+++|.|+|
T Consensus 124 ~~rHtDketGV~~w~~p~t~~~~F~y~g 151 (160)
T 3nrp_A 124 MHRHTDSETGVGRWWKPFDVSYEFKYVG 151 (160)
T ss_dssp CEEBCSTTTCCCCCCCCEEEEEEEEECC
T ss_pred cceecccccCCcccCCCEEEEEEEEecC
Confidence 555555543 12234567888887
No 8
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=27.42 E-value=76 Score=30.34 Aligned_cols=65 Identities=9% Similarity=0.054 Sum_probs=42.8
Q ss_pred EEeeccccCCCCCCCceeEEEEecCCccee----ceE---EE--ecCCCCCc-CeEEEEEEEeCCeEeeeeeeEe
Q 027326 64 ALIPIAKPTGFTGADPVKISFQVGREKFRV----PWL---FV--INRKSSQV-PMIDVHLRYSGNDLLGVTAKIV 128 (225)
Q Consensus 64 V~vpipKp~g~t~~D~YKIsFsF~~dkf~T----pWL---~v--i~rks~~v-pmIDv~L~ySg~dLlgV~AkVv 128 (225)
-.+|.-|+.-|+.+.++.|...+.+++-.+ .+| .+ |.....-. +.|+|+|.++.+-|+.|+|..+
T Consensus 423 t~iP~~k~~~f~~~~~~~~~~~~~ge~~~~~~~n~~lg~f~l~gi~~~~~g~~~~i~v~f~id~~Gil~V~a~~~ 497 (675)
T 3d2f_A 423 SSFPSTKLITLNRTGDFSMAASYTDITQLPPNTPEQIANWEITGVQLPEGQDSVPVKLKLRCDPSGLHTIEEAYT 497 (675)
T ss_dssp EEESEEEEEEEEESSCEEEEEEESCGGGSCTTCCSEEEEEEEECCCCCSSCSCEEEEEEEEECTTSCEEEEEEEE
T ss_pred CCCCcccceeeeecCCceEEEEEcCCcccccccCceeeEEEecCcCCCCCCCcceEEEEEEEcCCCcEEEEEEEE
Confidence 356666666676677788887776665433 133 12 21222233 5999999999999999999733
No 9
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1
Probab=24.99 E-value=79 Score=24.20 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.8
Q ss_pred CcCeEEEEEEEeCCeEeeeeeeE
Q 027326 105 QVPMIDVHLRYSGNDLLGVTAKI 127 (225)
Q Consensus 105 ~vpmIDv~L~ySg~dLlgV~AkV 127 (225)
-.|.|+|+|.+..+-++-|+|+.
T Consensus 96 G~~~IeVtf~iD~nGiL~V~a~d 118 (135)
T 1q5l_A 96 GMPQIEVTFDIDADGILHVSAKD 118 (135)
T ss_dssp SSCCEEEEEEECTTSEEEEEEEE
T ss_pred ceeEEEEEEEECCCCEEEEEEEE
Confidence 45799999999999999999973
No 10
>2idl_A Hypothetical protein; conserved hypothetical, MCSG, PSI2, MAD, structural genomics structure initiative; 1.70A {Streptococcus pneumoniae} SCOP: d.64.2.1
Probab=20.97 E-value=70 Score=24.28 Aligned_cols=20 Identities=15% Similarity=0.220 Sum_probs=17.4
Q ss_pred CeEEEEEEE-eCCeEeeeeee
Q 027326 107 PMIDVHLRY-SGNDLLGVTAK 126 (225)
Q Consensus 107 pmIDv~L~y-Sg~dLlgV~Ak 126 (225)
-||.|++++ .+|.|.+.+++
T Consensus 3 ~MI~V~i~~~~~~~i~~f~v~ 23 (117)
T 2idl_A 3 AMIQAVFERAEDGELRSAEIT 23 (117)
T ss_dssp CCEEEEEEECTTSCEEEEEEE
T ss_pred cCEEEEEEECCCCCEEEEEEE
Confidence 499999988 78899999887
Done!