Query 027326
Match_columns 225
No_of_seqs 26 out of 28
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 13:30:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027326.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027326hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1yuwa1 b.130.1.1 (A:385-543) 38.9 14 0.0011 27.6 4.0 30 99-128 80-109 (159)
2 d2g0ia1 d.64.2.1 (A:1-111) Hyp 34.5 18 0.0013 25.6 3.7 19 108-126 1-19 (111)
3 d1dkza2 b.130.1.1 (A:389-506) 33.7 21 0.0015 25.5 4.0 31 99-129 74-104 (118)
4 d1u00a2 b.130.1.1 (A:389-503) 32.4 18 0.0013 25.6 3.5 27 103-129 75-101 (115)
5 d1s4ca1 b.82.2.7 (A:1-143) Hyp 27.3 21 0.0015 26.1 3.1 60 106-180 66-127 (143)
6 d2nn6i1 b.40.4.5 (I:61-185) Ex 18.3 18 0.0013 26.1 1.0 14 21-34 57-70 (125)
7 d2hthb1 b.55.1.12 (B:3-131) Va 16.8 54 0.0039 23.4 3.4 64 25-88 32-112 (129)
8 d1dx8a_ g.41.5.1 (A:) Rubredox 14.3 49 0.0036 22.3 2.4 38 43-80 30-69 (70)
9 d1wdda1 c.1.14.1 (A:151-475) R 14.2 23 0.0017 29.6 0.8 17 61-77 16-33 (325)
10 d1whoa_ b.7.3.1 (A:) PHL P 2 { 13.1 1.5E+02 0.011 19.8 4.9 21 106-126 14-34 (94)
No 1
>d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=38.91 E-value=14 Score=27.62 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=24.7
Q ss_pred ecCCCCCcCeEEEEEEEeCCeEeeeeeeEe
Q 027326 99 INRKSSQVPMIDVHLRYSGNDLLGVTAKIV 128 (225)
Q Consensus 99 i~rks~~vpmIDv~L~ySg~dLlgV~AkVv 128 (225)
+.....-.|.|+|+|.|.-+-|+.|+|+..
T Consensus 80 ip~~~~G~~~I~Vtf~id~nGil~V~A~d~ 109 (159)
T d1yuwa1 80 IPPAPRGVPQIEVTFDIDANGILNVSAVDK 109 (159)
T ss_dssp CCCCSTTCCCEEEEEEECTTCCEEEEEEET
T ss_pred CCcCCCCCceEEEEEEEcCCCeEEEEEEEc
Confidence 334555778899999999999999999843
No 2
>d2g0ia1 d.64.2.1 (A:1-111) Hypothetical protein Smu.848 {Streptococcus mutans [TaxId: 1309]}
Probab=34.47 E-value=18 Score=25.58 Aligned_cols=19 Identities=21% Similarity=0.106 Sum_probs=17.8
Q ss_pred eEEEEEEEeCCeEeeeeee
Q 027326 108 MIDVHLRYSGNDLLGVTAK 126 (225)
Q Consensus 108 mIDv~L~ySg~dLlgV~Ak 126 (225)
||.+++++.+|.|.+.+++
T Consensus 1 MI~v~~~~~~~~i~~f~v~ 19 (111)
T d2g0ia1 1 MIQATFIRRKGILESVELT 19 (111)
T ss_dssp CEEEEEEEETTEEEEEEEE
T ss_pred CEEEEEEEcCCeEEEEEEE
Confidence 8999999999999999877
No 3
>d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]}
Probab=33.73 E-value=21 Score=25.45 Aligned_cols=31 Identities=29% Similarity=0.438 Sum_probs=24.8
Q ss_pred ecCCCCCcCeEEEEEEEeCCeEeeeeeeEee
Q 027326 99 INRKSSQVPMIDVHLRYSGNDLLGVTAKIVD 129 (225)
Q Consensus 99 i~rks~~vpmIDv~L~ySg~dLlgV~AkVvd 129 (225)
+.....-.|.|+|+|.|+.+-++-|+|+.+.
T Consensus 74 ip~~p~G~~~I~Vtf~iD~nGiL~V~a~d~~ 104 (118)
T d1dkza2 74 INPAPRGMPQIEVTFDIDADGILHVSAKDKN 104 (118)
T ss_dssp CCSCCTTCSCEEEEEEECTTCCEEEEEEETT
T ss_pred CccCCCCCcEEEEEEEecCCCeEEEEEEECC
Confidence 4444556788999999999999999998443
No 4
>d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]}
Probab=32.42 E-value=18 Score=25.65 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=22.9
Q ss_pred CCCcCeEEEEEEEeCCeEeeeeeeEee
Q 027326 103 SSQVPMIDVHLRYSGNDLLGVTAKIVD 129 (225)
Q Consensus 103 s~~vpmIDv~L~ySg~dLlgV~AkVvd 129 (225)
....|.|+|+|.|+-+-++-|+|.-++
T Consensus 75 p~G~~~I~Vtf~id~nGiL~V~A~d~~ 101 (115)
T d1u00a2 75 PAGGAHIRVTFQVDADGLLSVTAMEKS 101 (115)
T ss_dssp STTCSCEEEEEEECTTCCEEEEEEETT
T ss_pred ccccccEEEEEEccCCceEEEEEEECC
Confidence 445889999999999999999998443
No 5
>d1s4ca1 b.82.2.7 (A:1-143) Hypothetical protein HI0227 {Haemophilus influenzae [TaxId: 727]}
Probab=27.32 E-value=21 Score=26.14 Aligned_cols=60 Identities=15% Similarity=0.274 Sum_probs=35.5
Q ss_pred cCeEEEEEEEeCCeEeeeeeeEeeC--ChhhhhhCCCCcccccCCCCCCCeEEEEEEEEEeEeeeecceeEEEeecc
Q 027326 106 VPMIDVHLRYSGNDLLGVTAKIVDM--PQRYVEIHPDLPKYFWQPESWPKHVLIRYTWEEQSEIDVASGFYVLFASG 180 (225)
Q Consensus 106 vpmIDv~L~ySg~dLlgV~AkVvd~--p~~y~e~H~~l~~~f~d~~~WPKHvLV~Y~W~e~seiDv~sGlyVLF~sg 180 (225)
=.+|||++.-+|.+..|++...-++ -..|-+ -.++. |- -.-...+.++...|-|++|.=+
T Consensus 66 ~~YiDIq~vl~G~E~i~~~~~~~~~~~~~~y~~-~~D~~--f~------------~~~~~~~~i~l~~G~f~iFfP~ 127 (143)
T d1s4ca1 66 HEYLDVQVLIRGTENIEVGATYPNLSKYEDYNE-ADDYQ--LC------------ADIDDKFTVTMKPKMFAVFYPY 127 (143)
T ss_dssp SSEEEEEEEEESCEEEEECCSCCCGGGSCCCBT-TTTBE--EE------------SCCTTCEEEEECTTEEEEECTT
T ss_pred cceEEEEEEeeCceEEEEecCCCCcccccccCc-ccCEE--ee------------cCCCcceEEEeCCCeEEEECCC
Confidence 3589999999999999987542222 112222 11111 11 0112234578999999988754
No 6
>d2nn6i1 b.40.4.5 (I:61-185) Exosome component 1, EXOSC1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.31 E-value=18 Score=26.13 Aligned_cols=14 Identities=50% Similarity=0.819 Sum_probs=11.3
Q ss_pred hhhccCCCCCcccc
Q 027326 21 SISLAYRPGDIVPM 34 (225)
Q Consensus 21 ~~~~ayr~GDiVp~ 34 (225)
.+.+.||+||+|.-
T Consensus 57 ~m~~~fr~GDiV~A 70 (125)
T d2nn6i1 57 EIYKSFRPGDIVLA 70 (125)
T ss_dssp CGGGTCCSSSEEEE
T ss_pred hHHHhcCCCCEEEE
Confidence 36788999999973
No 7
>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.75 E-value=54 Score=23.44 Aligned_cols=64 Identities=13% Similarity=0.263 Sum_probs=35.7
Q ss_pred cCCCCCccccccceeeccCcce--ee-----cc--CCCCCCcccccceEEe-----eccccCC---CCCCCceeEEEEec
Q 027326 25 AYRPGDIVPMSKMSQYHNSRTV--WH-----DV--IGKHCPIFAVNREALI-----PIAKPTG---FTGADPVKISFQVG 87 (225)
Q Consensus 25 ayr~GDiVp~sr~~QfH~sRT~--Wh-----Dl--~grHcP~Fgvdr~V~v-----pipKp~g---~t~~D~YKIsFsF~ 87 (225)
.++.|.++=|+.|-.|-.+... .- .| ...+.|.||-+..+.+ |.++|.| ..+.+-.||+|-=|
T Consensus 32 ~~~~G~l~LTthRli~~~~~~~~~s~~lpl~~i~~~e~~~~~fg~s~ki~l~l~~~~~~~~~gp~~~s~~~~~KLsFk~G 111 (129)
T d2hthb1 32 KFDAGTLLLSTHRLIWRDQKNHECCMAILLSQIVFIEEQAAGIGKSAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEH 111 (129)
T ss_dssp CCCCEEEEEESSEEEEEETTCCSCCEEEEGGGEEEEEEECCTTSSCCEEEEEECCCCCCSSSCCCSTTSCCEEEEEETTS
T ss_pred cccceEEEEEeceEEEecCCCCceEEEEEhHHceeeeEEcccccCCceEEEEEccCCcCCcCCCcCcCCceEEEEEECCC
Confidence 4677777777777766433111 10 11 1136788888855444 2333333 55666678887655
Q ss_pred C
Q 027326 88 R 88 (225)
Q Consensus 88 ~ 88 (225)
|
T Consensus 112 G 112 (129)
T d2hthb1 112 G 112 (129)
T ss_dssp C
T ss_pred C
Confidence 4
No 8
>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId: 55529]}
Probab=14.30 E-value=49 Score=22.31 Aligned_cols=38 Identities=18% Similarity=0.319 Sum_probs=30.1
Q ss_pred CcceeeccCCC-CCCcccccceEEeecc-ccCCCCCCCce
Q 027326 43 SRTVWHDVIGK-HCPIFAVNREALIPIA-KPTGFTGADPV 80 (225)
Q Consensus 43 sRT~WhDl~gr-HcP~Fgvdr~V~vpip-Kp~g~t~~D~Y 80 (225)
..|.|.||... .||.=+..|+.-.++. ++.||.++--|
T Consensus 30 pGT~F~dLP~dW~CP~Cga~K~~F~~~~~~~agf~~N~~y 69 (70)
T d1dx8a_ 30 PGTPFVDLSDSFMCPACRSPKNQFKSIKKVIAGFAENQKY 69 (70)
T ss_dssp SSCCGGGSCTTCBCTTTCCBGGGEEECCCBCCCSCCCSCC
T ss_pred CCCChHHCCCCCCCcCCCCcHHHheEcccccCChHHhccc
Confidence 56999999977 8999999999888874 44488776444
No 9
>d1wdda1 c.1.14.1 (A:151-475) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=14.16 E-value=23 Score=29.61 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=12.7
Q ss_pred cceEEeecccc-CCCCCC
Q 027326 61 NREALIPIAKP-TGFTGA 77 (225)
Q Consensus 61 dr~V~vpipKp-~g~t~~ 77 (225)
||-++..|.|| +|++++
T Consensus 16 ~RPLlgtiiKP~~Glsp~ 33 (325)
T d1wdda1 16 GRPLLGCTIKPKLGLSAK 33 (325)
T ss_dssp SSCEEECBCSSSSCCCHH
T ss_pred CCCeEEeecCCCCCCCHH
Confidence 67788999999 487443
No 10
>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]}
Probab=13.07 E-value=1.5e+02 Score=19.80 Aligned_cols=21 Identities=19% Similarity=0.431 Sum_probs=14.7
Q ss_pred cCeEEEEEEEeCCeEeeeeee
Q 027326 106 VPMIDVHLRYSGNDLLGVTAK 126 (225)
Q Consensus 106 vpmIDv~L~ySg~dLlgV~Ak 126 (225)
-..+-+.+.|.||++..|..+
T Consensus 14 p~~lav~v~~~gg~i~~vev~ 34 (94)
T d1whoa_ 14 EKHLAVLVKYEGDTMAEVELR 34 (94)
T ss_dssp TTEEEEEEEETTCCEEEEEEE
T ss_pred ccEEEEEEEEcCCCEEEEEEE
Confidence 345667778888887776655
Done!