Query 027328
Match_columns 225
No_of_seqs 162 out of 457
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 08:18:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027328.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027328hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3142 Prenylated rab accepto 100.0 3E-52 6.4E-57 352.8 17.8 177 28-207 10-186 (187)
2 PF03208 PRA1: PRA1 family pro 100.0 2.1E-37 4.6E-42 253.2 16.4 149 49-197 2-150 (153)
3 KOG4050 Glutamate transporter 99.9 5.4E-22 1.2E-26 164.1 12.1 135 49-187 13-154 (188)
4 COG5130 YIP3 Prenylated rab ac 99.9 5.5E-22 1.2E-26 161.1 10.6 141 47-189 21-161 (169)
5 COG1955 FlaJ Archaeal flagella 89.1 4.2 9E-05 40.1 10.5 59 36-98 120-178 (527)
6 PF02300 Fumarate_red_C: Fumar 69.9 24 0.00052 28.8 7.0 50 102-151 61-114 (129)
7 PF05934 MCLC: Mid-1-related c 67.4 64 0.0014 32.0 10.5 60 29-89 87-165 (549)
8 PRK04987 fumarate reductase su 52.2 58 0.0013 26.6 6.3 51 101-151 61-115 (130)
9 COG1575 MenA 1,4-dihydroxy-2-n 50.8 69 0.0015 29.7 7.3 116 74-197 90-206 (303)
10 PRK13603 fumarate reductase su 48.5 49 0.0011 26.9 5.3 52 101-152 57-112 (126)
11 PF05879 RHD3: Root hair defec 48.0 32 0.00069 35.4 5.2 26 100-125 665-690 (742)
12 KOG0054 Multidrug resistance-a 47.3 1.4E+02 0.0029 33.3 9.9 66 55-123 902-974 (1381)
13 cd00546 QFR_TypeD_subunitC Qui 46.9 56 0.0012 26.5 5.4 51 101-151 57-111 (124)
14 PF10724 DUF2516: Protein of u 45.0 1.3E+02 0.0028 23.4 7.0 50 117-168 22-71 (100)
15 PF15187 Augurin: Oesophageal 40.5 15 0.00032 29.0 1.1 55 35-91 26-89 (114)
16 PRK12324 phosphoribose diphosp 39.7 1.2E+02 0.0026 27.7 7.2 64 80-147 199-279 (295)
17 PRK06041 flagellar assembly pr 39.3 4E+02 0.0087 26.5 11.7 61 35-99 141-201 (553)
18 PF13268 DUF4059: Protein of u 37.8 1.6E+02 0.0036 21.6 6.6 38 116-160 23-64 (72)
19 PF07305 DUF1454: Protein of u 37.5 82 0.0018 27.4 5.3 48 35-85 41-90 (200)
20 PF14256 YwiC: YwiC-like prote 37.0 1.4E+02 0.0031 23.9 6.4 46 146-191 65-110 (129)
21 COG3671 Predicted membrane pro 35.7 2.4E+02 0.0052 22.9 7.7 64 121-185 46-111 (125)
22 COG4025 Predicted membrane pro 34.5 3.6E+02 0.0078 24.5 9.2 16 72-87 78-93 (284)
23 PRK04949 putative sulfate tran 33.5 3.5E+02 0.0075 24.1 12.5 49 39-95 100-152 (251)
24 PRK11715 inner membrane protei 32.5 4.5E+02 0.0098 25.6 10.0 30 67-104 290-319 (436)
25 COG0382 UbiA 4-hydroxybenzoate 32.4 3.6E+02 0.0078 23.9 10.6 30 170-204 173-202 (289)
26 PRK13592 ubiA prenyltransferas 32.1 3.5E+02 0.0076 25.0 8.8 17 172-188 183-199 (299)
27 PF04140 ICMT: Isoprenylcystei 32.0 55 0.0012 24.6 3.1 36 89-124 47-83 (94)
28 PF06123 CreD: Inner membrane 31.0 5E+02 0.011 25.2 10.3 31 67-105 284-314 (430)
29 TIGR02203 MsbA_lipidA lipid A 30.6 4.7E+02 0.01 25.2 10.0 21 72-92 109-129 (571)
30 PF02411 MerT: MerT mercuric t 30.6 1.9E+02 0.0042 22.9 6.1 12 114-125 60-71 (116)
31 PRK05305 phosphatidylserine de 29.9 1.1E+02 0.0024 26.2 5.0 40 88-129 6-45 (206)
32 PF08372 PRT_C: Plant phosphor 29.8 1.7E+02 0.0036 24.5 5.8 43 72-114 77-122 (156)
33 PRK13823 conjugal transfer pro 29.4 1.1E+02 0.0025 23.4 4.4 23 130-155 13-35 (94)
34 PRK10263 DNA translocase FtsK; 29.3 6.4E+02 0.014 28.3 11.3 9 186-194 207-215 (1355)
35 cd01785 PDZ_GEF_RA Ubiquitin-l 29.2 12 0.00025 28.3 -1.0 23 68-90 62-84 (85)
36 PRK13591 ubiA prenyltransferas 27.9 4.9E+02 0.011 24.1 9.2 56 59-122 78-135 (307)
37 PF11368 DUF3169: Protein of u 27.9 3.1E+02 0.0068 23.9 7.6 45 80-124 189-237 (248)
38 TIGR01294 P_lamban phospholamb 27.7 91 0.002 21.1 3.1 31 74-104 18-48 (52)
39 KOG4385 Predicted forkhead tra 26.4 1.4E+02 0.003 29.7 5.4 42 53-94 365-412 (581)
40 PF11992 DUF3488: Domain of un 26.3 5E+02 0.011 23.6 9.3 6 141-146 100-105 (325)
41 PRK10789 putative multidrug tr 25.5 6.4E+02 0.014 24.6 10.4 17 72-88 91-107 (569)
42 PF03522 KCl_Cotrans_1: K-Cl C 24.8 31 0.00067 21.2 0.4 17 180-197 5-21 (30)
43 TIGR03750 conj_TIGR03750 conju 24.6 3.4E+02 0.0073 21.5 6.4 18 127-146 7-24 (111)
44 PF09991 DUF2232: Predicted me 24.5 4E+02 0.0087 22.9 7.7 38 149-186 44-81 (290)
45 PF06645 SPC12: Microsomal sig 23.8 2.9E+02 0.0063 20.1 5.8 32 148-179 19-50 (76)
46 PF11808 DUF3329: Domain of un 23.4 2.6E+02 0.0055 20.8 5.4 27 82-108 3-29 (90)
47 PF12666 PrgI: PrgI family pro 22.9 1.8E+02 0.004 21.3 4.5 23 170-192 51-73 (93)
48 CHL00114 psbX photosystem II p 22.1 83 0.0018 20.5 2.1 21 160-180 2-22 (39)
49 PF12264 Waikav_capsid_1: Waik 22.0 53 0.0011 28.0 1.5 25 65-89 45-69 (197)
50 PF04272 Phospholamban: Phosph 22.0 1.1E+02 0.0023 20.7 2.6 27 78-104 22-48 (52)
51 PRK08238 hypothetical protein; 21.6 4.1E+02 0.0089 25.9 7.7 75 81-158 379-477 (479)
52 COG5477 Predicted small integr 21.4 3.8E+02 0.0082 20.5 7.2 34 145-178 57-91 (97)
53 PRK11174 cysteine/glutathione 21.4 7.5E+02 0.016 24.0 9.6 20 72-91 118-137 (588)
54 PRK11176 lipid transporter ATP 20.9 7.7E+02 0.017 23.9 9.8 21 72-92 120-140 (582)
55 TIGR01194 cyc_pep_trnsptr cycl 20.7 7.5E+02 0.016 24.1 9.4 17 72-88 108-124 (555)
56 PF12811 BaxI_1: Bax inhibitor 20.5 6.6E+02 0.014 22.9 9.1 18 150-167 183-200 (274)
57 PF04530 Viral_Beta_CD: Viral 20.2 1.3E+02 0.0028 24.3 3.3 27 75-101 34-61 (122)
No 1
>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-52 Score=352.78 Aligned_cols=177 Identities=47% Similarity=0.856 Sum_probs=170.4
Q ss_pred CCCCCCchHHHHHHHHHHHhhhhcCCCCCChhHhhCCCCCCCCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhh
Q 027328 28 SQPPVATPAFRALINHISDSLRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNP 107 (225)
Q Consensus 28 ~~~~~~~~a~~~~~s~~~~~~~~~l~~~RPW~EF~d~~~fs~P~s~sea~~Ri~~NL~YF~~NY~li~~~l~~~~Ll~~P 107 (225)
++.+++++..+.+.+|.+|+++..++++|||+||+|+++|++|+|++|+.+|+|+|+.|||.||.+++.+++++++++||
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~lst~RpW~ef~d~~~fs~P~s~s~a~sRi~~Nl~yF~~NY~~iv~~~~~~sLi~~P 89 (187)
T KOG3142|consen 10 SSSPSQALSVESISSRAKQTIQSGLSTRRPWSEFFDRSAFSRPRSLSDATSRIKRNLSYFRVNYVIIVAILLFLSLITHP 89 (187)
T ss_pred CCCcccccchhhHHHHHHHHHHHHHhccCCHHHHHcccccCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhH
Confidence 45556677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCeEEcceeccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 027328 108 FSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPE 187 (225)
Q Consensus 108 ~~Llvll~l~~~w~~ly~~R~~~~pl~i~gr~~s~~~~~~~l~~vsi~ll~lt~v~~~lf~~l~i~~~vVllHAafR~p~ 187 (225)
++|+++++++++|+|+|+.| |+|++++||+++|+++++++++++++++|+++++++++|++++|+++|+.||+||++|
T Consensus 90 ~~Livl~~lv~~w~~LY~~r--d~pLvlfgr~i~d~~~l~~L~~~ti~~lflt~~~~~l~~~l~~g~~vv~~Haafr~~d 167 (187)
T KOG3142|consen 90 LSLIVLLALVAAWLFLYFLR--DEPLVLFGRQISDREVLIGLVLITIPVLFLTSAGSNLLWALGAGLVVVLIHAAFRNTD 167 (187)
T ss_pred HHHHHHHHHHHHHHheeeec--CCCeEEeeEEecCcchhhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHhHHHHhChH
Confidence 99999999999999999988 7899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCceeeec
Q 027328 188 DLFLDEQEPSASTGFLSFIG 207 (225)
Q Consensus 188 dlflde~e~~~~~g~~s~~~ 207 (225)
|+|+||||+. .+|++|+.+
T Consensus 168 dLF~dee~~~-~~gl~s~~~ 186 (187)
T KOG3142|consen 168 DLFLDEEEAA-ASGLLSFSS 186 (187)
T ss_pred hhhhhhhhcc-cccccccCC
Confidence 9999999988 789999865
No 2
>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1.
Probab=100.00 E-value=2.1e-37 Score=253.18 Aligned_cols=149 Identities=39% Similarity=0.655 Sum_probs=140.0
Q ss_pred hhcCCCCCChhHhhCCCCCCCCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccC
Q 027328 49 RYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRP 128 (225)
Q Consensus 49 ~~~l~~~RPW~EF~d~~~fs~P~s~sea~~Ri~~NL~YF~~NY~li~~~l~~~~Ll~~P~~Llvll~l~~~w~~ly~~R~ 128 (225)
+.+++++|||+||+|.++|+.|+|++|+.+|+++|+.|||+||++++++++++++++||+.++++++++++|.+++..+.
T Consensus 2 ~~~~~~~Rpw~eF~~~~~fs~P~~~~~~~~Ri~~Nl~~F~~NY~~i~~~~~~~~ll~~P~~l~~~~~~~~~~~~~~~~~~ 81 (153)
T PF03208_consen 2 QSRLSPLRPWREFFDTSRFSVPSSFSEAKSRIKRNLSYFQTNYLLIFLLLFLIFLLTNPFFLLVLLLVVALWAFIYKSRK 81 (153)
T ss_pred ccccCCCCCHHHHhCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCeEEcceeccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCC
Q 027328 129 SDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPEDLFLDEQEPS 197 (225)
Q Consensus 129 ~~~pl~i~gr~~s~~~~~~~l~~vsi~ll~lt~v~~~lf~~l~i~~~vVllHAafR~p~dlflde~e~~ 197 (225)
++++++++|+++++++++.++.+++++++++++++.+++|++++++++|++||+||+||+++.||+|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~~lvl~HA~~r~~~~~~~~e~~~~ 150 (153)
T PF03208_consen 82 ENDPIVIGGRKISPRQVLLALLIVSILLLFFTSAGLTLFWSLGASVLLVLLHASFREPDLKNKEENEIE 150 (153)
T ss_pred cCcchhccCcccCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhHHh
Confidence 468899999999999999999999999999999999999999999999999999999999877777654
No 3
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=99.88 E-value=5.4e-22 Score=164.05 Aligned_cols=135 Identities=13% Similarity=0.280 Sum_probs=106.3
Q ss_pred hhcCCCCCChhHhh-CCCCCCCCC--ChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--HHHH
Q 027328 49 RYGFAQRRPWAELA-DRSAFSKPE--SFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLAS--WIFL 123 (225)
Q Consensus 49 ~~~l~~~RPW~EF~-d~~~fs~P~--s~sea~~Ri~~NL~YF~~NY~li~~~l~~~~Ll~~P~~Llvll~l~~~--w~~l 123 (225)
+.++++.|.|+||+ +..||.+|+ |+++|++|+.+||.|||+||++++..++.+..+.+|..+++.+++.+. ..++
T Consensus 13 ~v~lpPlRa~ddF~lgS~Rfa~Pd~~D~~kW~nRVisNLLYyQTNYfv~~it~~~l~~f~sp~~iilglivvvlvi~~li 92 (188)
T KOG4050|consen 13 GVELPPLRALDDFLLGSDRFARPDFNDFKKWNNRVISNLLYYQTNYFVTFITLFLLHGFISPQDIILGLIVVVLVIGTLI 92 (188)
T ss_pred CCCCCcchhHHHhccCcccccCCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 46789999999986 889999999 999999999999999999999999999999999999888877666432 2223
Q ss_pred HhccCCCCCeEEcceeccchhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 027328 124 YLFRPSDQPLVVFGRTFSERETL--GVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPE 187 (225)
Q Consensus 124 y~~R~~~~pl~i~gr~~s~~~~~--~~l~~vsi~ll~lt~v~~~lf~~l~i~~~vVllHAafR~p~ 187 (225)
+... .++.++ |-.++++.+ .+...++++++.+.++..+..+++..+++++++||++|.++
T Consensus 93 wa~~-~~a~~k---rmr~~hp~~~l~gvllv~yfli~v~~~vlv~~F~il~Pv~L~lvHASLRLRn 154 (188)
T KOG4050|consen 93 WAAS-ADANIK---RMRTDHPLVTLAGVLLVGYFLISVFGGVLVFAFAILFPVLLVLVHASLRLRN 154 (188)
T ss_pred HHHh-ccHHHH---HHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2221 122221 333455554 46677888888877777777779999999999999999884
No 4
>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]
Probab=99.87 E-value=5.5e-22 Score=161.12 Aligned_cols=141 Identities=21% Similarity=0.223 Sum_probs=124.8
Q ss_pred hhhhcCCCCCChhHhhCCCCCCCCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc
Q 027328 47 SLRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLF 126 (225)
Q Consensus 47 ~~~~~l~~~RPW~EF~d~~~fs~P~s~sea~~Ri~~NL~YF~~NY~li~~~l~~~~Ll~~P~~Llvll~l~~~w~~ly~~ 126 (225)
+..+.+.+.+.-+||||..|.++|++++|+.+|+-.|++||+.||..+...+.+|.+++||..|+++.+..++.+.+.+.
T Consensus 21 s~~q~L~~~~~~~eFfni~rIs~PqNf~eaqsRv~~Nl~rFssnYlaiia~l~iy~ll~nllLlivIgivvaGvygi~kl 100 (169)
T COG5130 21 SIKQALGDKDVTREFFNIGRISVPQNFNEAQSRVFANLDRFSSNYLAIIAILTIYYLLYNLLLLIVIGIVVAGVYGIRKL 100 (169)
T ss_pred HHHHHhcCcccHHHHhccccccCCcchHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHhhhhheeeehhhc
Confidence 33444567888899999999999999999999999999999999999999999999999998888888777776667777
Q ss_pred cCCCCCeEEcceeccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 027328 127 RPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPEDL 189 (225)
Q Consensus 127 R~~~~pl~i~gr~~s~~~~~~~l~~vsi~ll~lt~v~~~lf~~l~i~~~vVllHAafR~p~dl 189 (225)
| ++|++..-+..+..+.|.+++++.+++.|+.+...+++|..+++.++++.||++..++-.
T Consensus 101 ~--g~~lv~~~~~~~~~~ly~glvcvlip~gffaspI~tllwl~gas~v~vfgHAal~e~p~e 161 (169)
T COG5130 101 R--GRPLVCNIELEPRSVLYAGLVCVLIPFGFFASPIVTLLWLSGASGVVVFGHAALLEEPLE 161 (169)
T ss_pred c--cCccccccceeecchhhhhHHHHHHHHHHHHhHHHHHHHHHhcceeEeechHHHcCCccc
Confidence 6 567777667777788899999999999999999999999999999999999999987544
No 5
>COG1955 FlaJ Archaeal flagella assembly protein J [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.12 E-value=4.2 Score=40.11 Aligned_cols=59 Identities=8% Similarity=0.233 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhhhhcCCCCCChhHhhCCCCCCCCCChHHHHHHHHHhHHHHHHHHHHHHHHH
Q 027328 36 AFRALINHISDSLRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVV 98 (225)
Q Consensus 36 a~~~~~s~~~~~~~~~l~~~RPW~EF~d~~~fs~P~s~sea~~Ri~~NL~YF~~NY~li~~~l 98 (225)
-+++|+.|+...+ ..--+..||+.++....=++.+...+|.-++++-|+.=|.-+.+-+
T Consensus 120 ~l~dfL~Rla~ai----~sGe~~~eFl~~E~~~~~~~y~~~Yer~LeSl~~~~diY~sll~S~ 178 (527)
T COG1955 120 ILADFLDRLAYAL----DSGEDLKEFLEREQDTTMDEYETEYERALESLDVWKDIYVSLLVSL 178 (527)
T ss_pred HHHHHHHHHHHhh----hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777665 4557789999888777777899999999999999999998655433
No 6
>PF02300 Fumarate_red_C: Fumarate reductase subunit C; InterPro: IPR003510 Fumarate reductase is a membrane-bound flavoenzyme consisting of four subunits, A-B. A and B comprise the membrane-extrinsic catalytic domain and C and D link the catalytic centres to the electron-transport chain. This family consists of the 15kDa hydrophobic subunit C.; GO: 0016020 membrane; PDB: 1KFY_O 1L0V_O 3P4S_O 2B76_O 3CIR_O 3P4R_C 1KF6_O 3P4P_C 3P4Q_C.
Probab=69.95 E-value=24 Score=28.77 Aligned_cols=50 Identities=20% Similarity=0.378 Sum_probs=25.9
Q ss_pred HHhhhhHHHHHHHHHHHHHHHH----HhccCCCCCeEEcceeccchhHHHHHHH
Q 027328 102 SLITNPFSLLMLVGLLASWIFL----YLFRPSDQPLVVFGRTFSERETLGVLIV 151 (225)
Q Consensus 102 ~Ll~~P~~Llvll~l~~~w~~l----y~~R~~~~pl~i~gr~~s~~~~~~~l~~ 151 (225)
..+.||+.++.-++.+++-+|= +.+-++.-++.++|+.+.++.+..+.-+
T Consensus 61 ~fl~nP~vv~lnliaLaa~L~Ha~TwF~l~Pkam~i~v~~~~v~~~~i~~~~w~ 114 (129)
T PF02300_consen 61 AFLQNPIVVILNLIALAAALLHAKTWFELAPKAMPIIVGGERVPPRPIVKGLWA 114 (129)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHHHHHHHHHGGGG---EETTEE--SHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHHHHHHHchhhhhhhcCCeeCCHHHHHHHHHH
Confidence 4456897777766665442220 1111344578999999999877654333
No 7
>PF05934 MCLC: Mid-1-related chloride channel (MCLC); InterPro: IPR009231 This entry consists of several Chloride channel CLIC-like proteins, which function as a chloride channel when incorporated in the planar lipid bilayer [].
Probab=67.41 E-value=64 Score=32.04 Aligned_cols=60 Identities=17% Similarity=0.301 Sum_probs=39.0
Q ss_pred CCCCCchHHHHHHHHHH-HhhhhcCCCC------------------CChhHhhCCCCCCCCCChHHHHHHHHHhHHHHHH
Q 027328 29 QPPVATPAFRALINHIS-DSLRYGFAQR------------------RPWAELADRSAFSKPESFSEATLRIRKNYSYFRV 89 (225)
Q Consensus 29 ~~~~~~~a~~~~~s~~~-~~~~~~l~~~------------------RPW~EF~d~~~fs~P~s~sea~~Ri~~NL~YF~~ 89 (225)
+.+..+|.++.|++|+. |..+-+++.- --|..|++-.. -++..++|+.+-|--|+.+.+.
T Consensus 87 ~~sqs~pvfkR~lnklL~e~~klglPde~~~~~~YDa~i~ls~q~l~Eiq~fl~~e~-wk~gaLddALs~iLin~k~hd~ 165 (549)
T PF05934_consen 87 QESQSNPVFKRYLNKLLIEAGKLGLPDENKGDMHYDAEIILSRQTLLEIQKFLNGED-WKPGALDDALSDILINFKPHDY 165 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhhcCCCCCcccccceeEEEEeeHHHHHHHHHhccCCC-CccchHHHHHHHHhhcCCcchh
Confidence 34456899999999954 4444444321 23556886665 3477888888888888765443
No 8
>PRK04987 fumarate reductase subunit C; Provisional
Probab=52.17 E-value=58 Score=26.58 Aligned_cols=51 Identities=16% Similarity=0.316 Sum_probs=30.5
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHH----HhccCCCCCeEEcceeccchhHHHHHHH
Q 027328 101 FSLITNPFSLLMLVGLLASWIFL----YLFRPSDQPLVVFGRTFSERETLGVLIV 151 (225)
Q Consensus 101 ~~Ll~~P~~Llvll~l~~~w~~l----y~~R~~~~pl~i~gr~~s~~~~~~~l~~ 151 (225)
+..+.||+.++.-++.+++-++= +.+-++.-++.++|+..+++.+..++-+
T Consensus 61 ~~flqnPiv~~lniiaL~a~LlHa~TwF~~~Pka~~i~v~~~~l~~~~ii~~~wa 115 (130)
T PRK04987 61 VSFLQNPIVVILNIITLAAALLHTKTWFEMAPKAANIIVKDEKMGPEPIIKALWA 115 (130)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHcchhheeeecCccCChHHHHHHHHH
Confidence 44566898777766665542221 1222344578888988888776554433
No 9
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=50.80 E-value=69 Score=29.66 Aligned_cols=116 Identities=9% Similarity=0.041 Sum_probs=48.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHhccCCCCCeEEcceeccchhHHHHHHHH
Q 027328 74 SEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPF-SLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVL 152 (225)
Q Consensus 74 sea~~Ri~~NL~YF~~NY~li~~~l~~~~Ll~~P~-~Llvll~l~~~w~~ly~~R~~~~pl~i~gr~~s~~~~~~~l~~v 152 (225)
++.+.|+.-++.-+ -|....++.+.++..+++. .++.+++.+++|.|- ..|.-++-..+-|--..+.+..+
T Consensus 90 ~~~k~~~~l~l~l~--~~~g~~llg~~~~~~s~~~~l~lG~l~~~~g~~YT------gGp~PlgY~gLGEi~~~vffG~l 161 (303)
T COG1575 90 QSMKPALILSLALF--LLAGLALLGVILAALSDWLVLLLGLLCIAAGILYT------GGPFPLGYMGLGEIFVGVFFGPL 161 (303)
T ss_pred ccCCHHHHHHHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHHHheeeec------cCCcCcccCCHHHHHHHHHHHHH
Confidence 34455555554432 2334444444555666775 333333334444432 23322222233332233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCC
Q 027328 153 SIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPEDLFLDEQEPS 197 (225)
Q Consensus 153 si~ll~lt~v~~~lf~~l~i~~~vVllHAafR~p~dlflde~e~~ 197 (225)
.+..-++...+..-...+..++.+.+.-+....-|++=+-|+|.+
T Consensus 162 ~v~g~~yiqt~~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~ 206 (303)
T COG1575 162 IVLGAYYIQTGRLSWAILLPSLPVGILIANILLANNLRDIEEDIR 206 (303)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcccccchhHHh
Confidence 333333333332222244455555555555555555422334444
No 10
>PRK13603 fumarate reductase subunit C; Provisional
Probab=48.52 E-value=49 Score=26.89 Aligned_cols=52 Identities=19% Similarity=0.242 Sum_probs=30.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHH----HhccCCCCCeEEcceeccchhHHHHHHHH
Q 027328 101 FSLITNPFSLLMLVGLLASWIFL----YLFRPSDQPLVVFGRTFSERETLGVLIVL 152 (225)
Q Consensus 101 ~~Ll~~P~~Llvll~l~~~w~~l----y~~R~~~~pl~i~gr~~s~~~~~~~l~~v 152 (225)
+..+.||+.++.-++.+++-++= +.+-++.-++.++|+...++.+..++-++
T Consensus 57 ~~flqnPivv~lniiaL~a~L~Ha~TwF~~~Pkam~I~v~~~~l~~~~iv~~~wa~ 112 (126)
T PRK13603 57 LDFSANPVVVVLNVVALSFLLLHAVTWFGSAPRAMVIQVRGRRVPARAVLAGHYAA 112 (126)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcCChHHHHHHHHHH
Confidence 44567898777766665542221 11223345677888888887765544333
No 11
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=47.98 E-value=32 Score=35.40 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=19.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHh
Q 027328 100 AFSLITNPFSLLMLVGLLASWIFLYL 125 (225)
Q Consensus 100 ~~~Ll~~P~~Llvll~l~~~w~~ly~ 125 (225)
++.++.||+.+.++++++++.+.+|.
T Consensus 665 ~m~vLrnPl~~~l~li~~~~~~~~~~ 690 (742)
T PF05879_consen 665 FMAVLRNPLYFTLLLILGGGFYVLYQ 690 (742)
T ss_pred HHHHHHChHHHHHHHHHHHHHHHHHH
Confidence 57889999888888777776666663
No 12
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=47.30 E-value=1.4e+02 Score=33.35 Aligned_cols=66 Identities=20% Similarity=0.397 Sum_probs=47.8
Q ss_pred CCChhHhhCC-------CCCCCCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 027328 55 RRPWAELADR-------SAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFL 123 (225)
Q Consensus 55 ~RPW~EF~d~-------~~fs~P~s~sea~~Ri~~NL~YF~~NY~li~~~l~~~~Ll~~P~~Llvll~l~~~w~~l 123 (225)
.|..-.|||. +|||+ |++..-.++-..+..|-.|.+-++.++.+++.. +|..++..+.+.++.+++
T Consensus 902 lrapm~FFdtTP~GRILNRFSk--D~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~-~P~fli~~~pl~v~~~~~ 974 (1381)
T KOG0054|consen 902 LRAPMSFFDTTPTGRILNRFSK--DIDTVDVLLPFTLEFFLQSLLNVLGILVVISYV-TPWFLIAIIPLGVIYYFV 974 (1381)
T ss_pred HhCcchhcCCCCccchhhhccc--chHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHH-hHHHHHHHHHHHHHHHHH
Confidence 3666778885 46887 788888899999999988888877776666654 577777766665554443
No 13
>cd00546 QFR_TypeD_subunitC Quinol:fumarate reductase (QFR) Type D subfamily, 15kD hydrophobic subunit C; QFR couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, the opposite reaction to that catalyzed by the related protein, succinate:quinine oxidoreductase (SQR). QFRs oxidize low potential quinols such as menaquinol and are involved in anaerobic respiration with fumarate as the terminal electron acceptor. SQR and QFR share a common subunit arrangement, composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type D as they contain two transmembrane subunits (C and D) and no heme groups. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron donor (quinol). The quinone binding site resides in the transmembrane subunits.
Probab=46.85 E-value=56 Score=26.47 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=29.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHH----HhccCCCCCeEEcceeccchhHHHHHHH
Q 027328 101 FSLITNPFSLLMLVGLLASWIFL----YLFRPSDQPLVVFGRTFSERETLGVLIV 151 (225)
Q Consensus 101 ~~Ll~~P~~Llvll~l~~~w~~l----y~~R~~~~pl~i~gr~~s~~~~~~~l~~ 151 (225)
+..+.||+.++.-++.+++-++= +.+-++.-++.++|+...++.+..++-+
T Consensus 57 ~~flqnPiv~~lniiaL~a~L~Ha~TwF~~~Pkam~i~v~~~~l~~~~iv~~~wa 111 (124)
T cd00546 57 VSFLQNPIVVLLNIIALAAALLHAKTWFEMAPKVMNIIVKGERVPPEAITKALWA 111 (124)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccCChHHHHHHHHH
Confidence 34566898777766665442221 1122334567778888888776554333
No 14
>PF10724 DUF2516: Protein of unknown function (DUF2516); InterPro: IPR019662 This entry represents a conserved protein in Actinobacteria. The function is not known.
Probab=44.98 E-value=1.3e+02 Score=23.37 Aligned_cols=50 Identities=12% Similarity=0.123 Sum_probs=22.7
Q ss_pred HHHHHHHHhccCCCCCeEEcceeccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027328 117 LASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILIS 168 (225)
Q Consensus 117 ~~~w~~ly~~R~~~~pl~i~gr~~s~~~~~~~l~~vsi~ll~lt~v~~~lf~ 168 (225)
+..|.++...|..++-...-|| ..|....++.+++..+.++...+..+++
T Consensus 22 ~~v~Alv~aa~~r~dAF~AadK--~tK~~Wl~Ilg~a~l~~~l~~~~~~~l~ 71 (100)
T PF10724_consen 22 LAVWALVDAARRRADAFTAADK--RTKPFWLAILGVAALVGLLFLGPLGFLG 71 (100)
T ss_pred HHHHHHHHHHhCCHhhhHhccc--ccchHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3445555554543444333332 2244555555555555444423344444
No 15
>PF15187 Augurin: Oesophageal cancer-related gene 4
Probab=40.51 E-value=15 Score=28.95 Aligned_cols=55 Identities=20% Similarity=0.442 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHhhhhcCCCCCC----hhH-h----hCCCCCCCCCChHHHHHHHHHhHHHHHHHH
Q 027328 35 PAFRALINHISDSLRYGFAQRRP----WAE-L----ADRSAFSKPESFSEATLRIRKNYSYFRVNY 91 (225)
Q Consensus 35 ~a~~~~~s~~~~~~~~~l~~~RP----W~E-F----~d~~~fs~P~s~sea~~Ri~~NL~YF~~NY 91 (225)
..+++|++.++...|+.+..-|| |-. | ||..+|. ++++=|.+|-+.+-.|||..|
T Consensus 26 skAkeFL~~l~R~kR~lWDRsrPdVQQW~qQFlYmGFDEak~E--~DlsYWm~~~R~~~~~~QhHY 89 (114)
T PF15187_consen 26 SKAKEFLASLKRQKRQLWDRSRPDVQQWYQQFLYMGFDEAKFE--DDLSYWMNRARSGDQYYQHHY 89 (114)
T ss_pred HHHHHHHHHhhhHHHhhhccCCHHHHHHHHHHHHhcchHHHhh--hhHHHHHhcCcCccchhhhcc
Confidence 45789999999999999999999 764 5 3554543 588999999999999998877
No 16
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=39.74 E-value=1.2e+02 Score=27.65 Aligned_cols=64 Identities=23% Similarity=0.393 Sum_probs=30.0
Q ss_pred HHHhHHHHHHHHHHH------HHHHHHHHHhh------hhHHHHHHHHHHHHHHH--HH-hcc--CCCCCeEEcceeccc
Q 027328 80 IRKNYSYFRVNYLTV------VAVVIAFSLIT------NPFSLLMLVGLLASWIF--LY-LFR--PSDQPLVVFGRTFSE 142 (225)
Q Consensus 80 i~~NL~YF~~NY~li------~~~l~~~~Ll~------~P~~Llvll~l~~~w~~--ly-~~R--~~~~pl~i~gr~~s~ 142 (225)
-|++++.|+.+++=. ...++++++++ +|..+.....++. |.+ .+ ..| ..|+|.++ -++|
T Consensus 199 ~r~~~~~Y~~~~l~~~~~~~~~~~v~~y~ly~~~~~~~~~~l~~t~p~v~~-~i~Ry~~l~~~~~~~~dP~~~---~l~D 274 (295)
T PRK12324 199 HRKVLEEYSPGFLDFMWTIVATAVLVTYSLYAFESGASSPWMIVTIPPVLY-GIFRYAYLDVDKGLGGEPEEI---LLKD 274 (295)
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHH-HHHHHHHHHHhccCCcCCcee---eeeC
Confidence 456667776665432 23334455553 4654444333322 222 22 122 23567554 5667
Q ss_pred hhHHH
Q 027328 143 RETLG 147 (225)
Q Consensus 143 ~~~~~ 147 (225)
|....
T Consensus 275 ~~~~~ 279 (295)
T PRK12324 275 RPLLL 279 (295)
T ss_pred HHHHH
Confidence 76543
No 17
>PRK06041 flagellar assembly protein J; Reviewed
Probab=39.33 E-value=4e+02 Score=26.52 Aligned_cols=61 Identities=13% Similarity=0.214 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHhhhhcCCCCCChhHhhCCCCCCCCCChHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 027328 35 PAFRALINHISDSLRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVI 99 (225)
Q Consensus 35 ~a~~~~~s~~~~~~~~~l~~~RPW~EF~d~~~fs~P~s~sea~~Ri~~NL~YF~~NY~li~~~l~ 99 (225)
..+++|+.++...++. --+..||+..+.-..=++.++..+|.-++|.-+..=|+.+++...
T Consensus 141 ~~l~~fl~~l~~~i~s----G~~l~~fL~~e~~~~~~~~~~~~~~~le~L~~~~E~Yvt~lvs~~ 201 (553)
T PRK06041 141 ELFADFLDRLAYSIDS----GEPLKEFLKQEQDTVMEDYKTFYERALYSLDVWKDLYVSLLLSVT 201 (553)
T ss_pred HHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588899998888763 347788886533333346677889999999999999987765443
No 18
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=37.82 E-value=1.6e+02 Score=21.62 Aligned_cols=38 Identities=21% Similarity=0.456 Sum_probs=21.5
Q ss_pred HHHHHHHHHhccCCCCCeEEcceeccchhHH----HHHHHHHHHHHHHH
Q 027328 116 LLASWIFLYLFRPSDQPLVVFGRTFSERETL----GVLIVLSIFVFFLT 160 (225)
Q Consensus 116 l~~~w~~ly~~R~~~~pl~i~gr~~s~~~~~----~~l~~vsi~ll~lt 160 (225)
..+.|.+.+..|..|+ +.++||-. ....+.+++++-|+
T Consensus 23 ~~~~wi~~Ra~~~~DK-------T~~eRQa~LyD~lmi~ImtIPILSFA 64 (72)
T PF13268_consen 23 VSGIWILWRALRKKDK-------TAKERQAFLYDMLMIAIMTIPILSFA 64 (72)
T ss_pred HHHHHHHHHHHHcCCC-------cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777776665443 44556542 34556667765443
No 19
>PF07305 DUF1454: Protein of unknown function (DUF1454); InterPro: IPR009918 This family consists of several Enterobacterial sequences of around 200 residues in length, which are often known as YiiQ proteins. The function of this family is unknown.
Probab=37.50 E-value=82 Score=27.43 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHhhhhcCCCCCChhHh--hCCCCCCCCCChHHHHHHHHHhHH
Q 027328 35 PAFRALINHISDSLRYGFAQRRPWAEL--ADRSAFSKPESFSEATLRIRKNYS 85 (225)
Q Consensus 35 ~a~~~~~s~~~~~~~~~l~~~RPW~EF--~d~~~fs~P~s~sea~~Ri~~NL~ 85 (225)
|.|..=+...+|..++.- +..|..|| ++.+.-+.| +-++.+||+.||+
T Consensus 41 PtFd~TI~~FRekyN~~N-p~Lpl~EfraI~~~~~~~~--ltRAASkINe~LY 90 (200)
T PF07305_consen 41 PTFDLTIPQFREKYNQDN-PTLPLNEFRAIDSKDDKAP--LTRAASKINENLY 90 (200)
T ss_pred CcccccHHHHHHHhhhcC-CCcchhheeeeccCCCcch--hhHHHHHhhhHHH
Confidence 455555666677665443 45899998 465555554 7899999999984
No 20
>PF14256 YwiC: YwiC-like protein
Probab=37.01 E-value=1.4e+02 Score=23.89 Aligned_cols=46 Identities=13% Similarity=0.006 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 027328 146 LGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPEDLFL 191 (225)
Q Consensus 146 ~~~l~~vsi~ll~lt~v~~~lf~~l~i~~~vVllHAafR~p~dlfl 191 (225)
|+++.++..+...........+..+.++++.|-+-.+.|++|--.+
T Consensus 65 Yg~~a~~~~l~~l~~~p~ll~~~~~~~pl~~v~~~~~~~~~eRsLl 110 (129)
T PF14256_consen 65 YGAIALVFGLPALLYAPRLLWWALLFLPLFAVNLYFAKRKRERSLL 110 (129)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence 4444444433334444444444445666677777777776654333
No 21
>COG3671 Predicted membrane protein [Function unknown]
Probab=35.72 E-value=2.4e+02 Score=22.86 Aligned_cols=64 Identities=17% Similarity=0.188 Sum_probs=32.8
Q ss_pred HHHHhccCCCCCeEEcceeccchhHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 027328 121 IFLYLFRPSDQPLVVFGRTFSERETLG-V-LIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRV 185 (225)
Q Consensus 121 ~~ly~~R~~~~pl~i~gr~~s~~~~~~-~-l~~vsi~ll~lt~v~~~lf~~l~i~~~vVllHAafR~ 185 (225)
.+-|.-|...+++..-..++.-|.-.. . ..++++ ++-+.+.|..+++++++=.++=++-|-.+.
T Consensus 46 i~AYv~rd~~~~~~~SHy~f~iRTFw~~vl~~iIg~-Llt~lgiGv~i~~AlgvW~i~Riv~G~~yl 111 (125)
T COG3671 46 IFAYVNRDKADSIAASHYEFLIRTFWLAVLWWIIGL-LLTFLGIGVVILVALGVWYIYRIVIGFKYL 111 (125)
T ss_pred HHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555655556555444444444322 1 122222 233345577777777776666666665554
No 22
>COG4025 Predicted membrane protein [Function unknown]
Probab=34.50 E-value=3.6e+02 Score=24.55 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=10.8
Q ss_pred ChHHHHHHHHHhHHHH
Q 027328 72 SFSEATLRIRKNYSYF 87 (225)
Q Consensus 72 s~sea~~Ri~~NL~YF 87 (225)
.+.+...|.++|..+-
T Consensus 78 ~fk~l~~~~kr~~a~~ 93 (284)
T COG4025 78 PFKFLEIRGKRNAAAH 93 (284)
T ss_pred ceehhhhhhccCCCcc
Confidence 4566667778887654
No 23
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=33.45 E-value=3.5e+02 Score=24.08 Aligned_cols=49 Identities=8% Similarity=0.161 Sum_probs=31.3
Q ss_pred HHHHHHHHhhhhcCCCC----CChhHhhCCCCCCCCCChHHHHHHHHHhHHHHHHHHHHHH
Q 027328 39 ALINHISDSLRYGFAQR----RPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVV 95 (225)
Q Consensus 39 ~~~s~~~~~~~~~l~~~----RPW~EF~d~~~fs~P~s~sea~~Ri~~NL~YF~~NY~li~ 95 (225)
=|.+.+.|.+++++... -||.|++ ++.-+...|--+++.||-.|-+.+.
T Consensus 100 PF~~~lAE~VE~~l~g~~~~~~~~~~~~--------~~~~r~l~~el~kl~y~l~~~i~ll 152 (251)
T PRK04949 100 PFNGLLAEKVEARLTGETLPDTGIAGLV--------KDVPRILKREWQKLAYYLPRAIVLL 152 (251)
T ss_pred HHhHHHHHHHHHHcCCCCCCCCchHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888776643 1223332 1344566777788999988865443
No 24
>PRK11715 inner membrane protein; Provisional
Probab=32.47 E-value=4.5e+02 Score=25.56 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=18.1
Q ss_pred CCCCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 027328 67 FSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLI 104 (225)
Q Consensus 67 fs~P~s~sea~~Ri~~NL~YF~~NY~li~~~l~~~~Ll 104 (225)
|--|-|.-.-.+|- ..|.++++++.+.+++
T Consensus 290 ~~~PVd~Y~~~~RA--------~KYgiLFI~LTF~~fF 319 (436)
T PRK11715 290 LIDPVDQYQKTERA--------VKYAILFIALTFAAFF 319 (436)
T ss_pred EeccccHHHHHHHH--------HhHHHHHHHHHHHHHH
Confidence 33455555555554 4588888777766554
No 25
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=32.35 E-value=3.6e+02 Score=23.94 Aligned_cols=30 Identities=10% Similarity=0.143 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCcee
Q 027328 170 VMVGAGLICAHGAFRVPEDLFLDEQEPSASTGFLS 204 (225)
Q Consensus 170 l~i~~~vVllHAafR~p~dlflde~e~~~~~g~~s 204 (225)
.....+-+..+..+..-+|. .||++ .|.-|
T Consensus 173 ~~~~~l~~~~~~~i~~~~D~-e~D~~----~G~~s 202 (289)
T COG0382 173 LLAAILWTLGYDIIYAIQDI-EGDRK----AGLKS 202 (289)
T ss_pred HHHHHHHHHHHHHHHhccCc-cchHh----cCCcc
Confidence 44455667777777776774 44433 35555
No 26
>PRK13592 ubiA prenyltransferase; Provisional
Probab=32.06 E-value=3.5e+02 Score=25.03 Aligned_cols=17 Identities=6% Similarity=-0.371 Sum_probs=10.4
Q ss_pred HHHHHHHHhhccCCCCC
Q 027328 172 VGAGLICAHGAFRVPED 188 (225)
Q Consensus 172 i~~~vVllHAafR~p~d 188 (225)
...+..+.-=..|+-||
T Consensus 183 ~afl~~l~rEI~KdieD 199 (299)
T PRK13592 183 TMYFPSLIWEVCRKIRA 199 (299)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 44455555556677777
No 27
>PF04140 ICMT: Isoprenylcysteine carboxyl methyltransferase (ICMT) family ; InterPro: IPR007269 The isoprenylcysteine o-methyltransferase (2.1.1.100 from EC) carries out carboyxl methylation of cleaved eukaryotic proteins that terminate in a CaaX motif. In Saccharomyces cerevisiae (Baker's yeast) this methylation is carried out by Ste14p, an integral endoplasmic reticulum membrane protein. Ste14p is the founding member of the isoprenylcysteine carboxyl methyltransferase (ICMT) family, whose members share significant sequence homology [].; GO: 0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity, 0006481 C-terminal protein methylation, 0016021 integral to membrane; PDB: 4A2N_B.
Probab=31.99 E-value=55 Score=24.62 Aligned_cols=36 Identities=17% Similarity=0.348 Sum_probs=18.4
Q ss_pred HHHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 027328 89 VNYLT-VVAVVIAFSLITNPFSLLMLVGLLASWIFLY 124 (225)
Q Consensus 89 ~NY~l-i~~~l~~~~Ll~~P~~Llvll~l~~~w~~ly 124 (225)
=||.. +...+....++.|+.....++..+..+.+..
T Consensus 47 P~Y~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~ 83 (94)
T PF04140_consen 47 PSYLGNIIWELGGQLLLFNAWLTALILFALVAWLLFV 83 (94)
T ss_dssp HHHHH-HHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 47777 5555556777788843333333333443333
No 28
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=31.01 E-value=5e+02 Score=25.18 Aligned_cols=31 Identities=13% Similarity=0.195 Sum_probs=18.7
Q ss_pred CCCCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q 027328 67 FSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLIT 105 (225)
Q Consensus 67 fs~P~s~sea~~Ri~~NL~YF~~NY~li~~~l~~~~Ll~ 105 (225)
|--|-|.-.-.+|- ..|.++++++.+++++.
T Consensus 284 l~~Pvd~Y~~~~Ra--------~KYgiLFI~LTF~~ffl 314 (430)
T PF06123_consen 284 LIEPVDHYQKSERA--------VKYGILFIGLTFLAFFL 314 (430)
T ss_pred EeccccHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 34455555555554 45888888777666543
No 29
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=30.64 E-value=4.7e+02 Score=25.21 Aligned_cols=21 Identities=10% Similarity=-0.115 Sum_probs=14.9
Q ss_pred ChHHHHHHHHHhHHHHHHHHH
Q 027328 72 SFSEATLRIRKNYSYFRVNYL 92 (225)
Q Consensus 72 s~sea~~Ri~~NL~YF~~NY~ 92 (225)
+.++..+|+...+...+.+|.
T Consensus 109 ~~g~~~~~l~~di~~i~~~~~ 129 (571)
T TIGR02203 109 PTGTLLSRITFDSEQVASAAT 129 (571)
T ss_pred CchHHHHHHHHHHHHHHHHHH
Confidence 457889998877766665553
No 30
>PF02411 MerT: MerT mercuric transport protein; InterPro: IPR003457 MerT is an mercuric transport integral membrane protein and is responsible for transport of the Hg2+ iron from periplasmic MerP (also part of the transport system) to mercuric reductase (MerA).; GO: 0015097 mercury ion transmembrane transporter activity, 0015694 mercury ion transport, 0016020 membrane
Probab=30.61 E-value=1.9e+02 Score=22.88 Aligned_cols=12 Identities=25% Similarity=0.094 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHh
Q 027328 114 VGLLASWIFLYL 125 (225)
Q Consensus 114 l~l~~~w~~ly~ 125 (225)
+++..+|.-+|.
T Consensus 60 ~~lg~a~~~~yr 71 (116)
T PF02411_consen 60 LFLGYAFWRLYR 71 (116)
T ss_pred HHHHHHHHHHHc
Confidence 333445555553
No 31
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=29.93 E-value=1.1e+02 Score=26.25 Aligned_cols=40 Identities=15% Similarity=0.127 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCC
Q 027328 88 RVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRPS 129 (225)
Q Consensus 88 ~~NY~li~~~l~~~~Ll~~P~~Llvll~l~~~w~~ly~~R~~ 129 (225)
...|+++.++++++..+..|...++.++ +..+.+|++|++
T Consensus 6 g~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ffRdp 45 (206)
T PRK05305 6 GYPFIAAAALVLLILGLLWWPLAWIGLL--LTLFCLYFFRDP 45 (206)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHheecCC
Confidence 3467776666665543333322222221 122335667854
No 32
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=29.76 E-value=1.7e+02 Score=24.54 Aligned_cols=43 Identities=23% Similarity=0.350 Sum_probs=31.7
Q ss_pred ChHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 027328 72 SFSEATLRIRKNYSY---FRVNYLTVVAVVIAFSLITNPFSLLMLV 114 (225)
Q Consensus 72 s~sea~~Ri~~NL~Y---F~~NY~li~~~l~~~~Ll~~P~~Llvll 114 (225)
+.....+|++.=+.. ..+..+++++++.+++++.-|+-.++++
T Consensus 77 d~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~ 122 (156)
T PF08372_consen 77 DVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLI 122 (156)
T ss_pred HHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 345566777666655 6788888888888999999998766443
No 33
>PRK13823 conjugal transfer protein TrbD; Provisional
Probab=29.35 E-value=1.1e+02 Score=23.40 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=12.1
Q ss_pred CCCeEEcceeccchhHHHHHHHHHHH
Q 027328 130 DQPLVVFGRTFSERETLGVLIVLSIF 155 (225)
Q Consensus 130 ~~pl~i~gr~~s~~~~~~~l~~vsi~ 155 (225)
.+|.-++| -||++.++-..++..
T Consensus 13 ~rp~Ll~G---a~R~l~i~~g~la~~ 35 (94)
T PRK13823 13 NRPNLFMG---GDRELVMFSGLLAGI 35 (94)
T ss_pred cccHhhCC---cchHHHHHHHHHHHH
Confidence 35656666 356666544444433
No 34
>PRK10263 DNA translocase FtsK; Provisional
Probab=29.30 E-value=6.4e+02 Score=28.30 Aligned_cols=9 Identities=33% Similarity=0.734 Sum_probs=4.2
Q ss_pred CCCCCCCCC
Q 027328 186 PEDLFLDEQ 194 (225)
Q Consensus 186 p~dlflde~ 194 (225)
+++-+.||+
T Consensus 207 ~~~~~~~~~ 215 (1355)
T PRK10263 207 RDDTWVDED 215 (1355)
T ss_pred cCccccccc
Confidence 344455544
No 35
>cd01785 PDZ_GEF_RA Ubiquitin-like domain of PDZ_GEF_RA. PDZ_GEF_RA PDZ-GEF is a guanine nucleotide exchange factor (GEF) characterised by the presence of a PSD-95/DlgA/ZO-1 (PDZ) domain, a Ras-association (RA) domain and a region related to a cyclic nucleotide binding domain (RCBD). RA-GEF exchanges nucleotides of both Rap1 and Rap2, but is also thought to mediate cAMP-induced Ras activation. The RA domain interacts with Rap1 and also contributes to the membrane localization of RA-GEF. This domain may function in a positive feedback loop.
Probab=29.24 E-value=12 Score=28.26 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.1
Q ss_pred CCCCChHHHHHHHHHhHHHHHHH
Q 027328 68 SKPESFSEATLRIRKNYSYFRVN 90 (225)
Q Consensus 68 s~P~s~sea~~Ri~~NL~YF~~N 90 (225)
..|+.++++..||.-|=+||--|
T Consensus 62 RLPdql~~La~RI~Ln~RYYLKn 84 (85)
T cd01785 62 RLPDQLQNLAERIQLSSRYYLKN 84 (85)
T ss_pred cCCHHHHHHHHhhcccceEEecc
Confidence 48999999999999999998544
No 36
>PRK13591 ubiA prenyltransferase; Provisional
Probab=27.94 E-value=4.9e+02 Score=24.09 Aligned_cols=56 Identities=14% Similarity=0.157 Sum_probs=24.6
Q ss_pred hHhhCC--CCCCCCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 027328 59 AELADR--SAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIF 122 (225)
Q Consensus 59 ~EF~d~--~~fs~P~s~sea~~Ri~~NL~YF~~NY~li~~~l~~~~Ll~~P~~Llvll~l~~~w~~ 122 (225)
.|++|. ++.++|+= -..|..-...-+++.+++-+.++...++ .++.+++.++++.|
T Consensus 78 Nd~~D~eiD~IN~P~r-------~~~s~~~a~~ls~la~llGl~La~~~g~-~ll~ll~~l~g~lY 135 (307)
T PRK13591 78 DRALDSEEDAVNRSEL-------IGSNKKIGLLVSLLAFLLGTYILAMDGM-LLLAFLPFITGYLY 135 (307)
T ss_pred hhhccchhhhccCccc-------cccCHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHh
Confidence 466654 45777751 1112222333333344433444444554 33444444444443
No 37
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=27.85 E-value=3.1e+02 Score=23.91 Aligned_cols=45 Identities=27% Similarity=0.615 Sum_probs=25.3
Q ss_pred HHHhHH-HHHHHHHH---HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 027328 80 IRKNYS-YFRVNYLT---VVAVVIAFSLITNPFSLLMLVGLLASWIFLY 124 (225)
Q Consensus 80 i~~NL~-YF~~NY~l---i~~~l~~~~Ll~~P~~Llvll~l~~~w~~ly 124 (225)
.+.+.. |++.|..+ +.+++.++++.++-..++.++++.+.|.|..
T Consensus 189 y~~~yk~~~~ln~~ll~~~~~~l~i~s~~t~~~q~la~lvl~~I~iyi~ 237 (248)
T PF11368_consen 189 YEASYKIYFKLNQYLLPILYILLFIYSLLTGENQLLAILVLIIIWIYIN 237 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHH
Confidence 344554 44547444 3344456666766555666666667777653
No 38
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=27.66 E-value=91 Score=21.10 Aligned_cols=31 Identities=16% Similarity=0.351 Sum_probs=22.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 027328 74 SEATLRIRKNYSYFRVNYLTVVAVVIAFSLI 104 (225)
Q Consensus 74 sea~~Ri~~NL~YF~~NY~li~~~l~~~~Ll 104 (225)
-|.....+.|+.---.|+-++.+.++++|++
T Consensus 18 ie~~~qar~~lq~lfvnf~lilicllli~ii 48 (52)
T TIGR01294 18 IEMPQQARQNLQNLFINFCLILICLLLICII 48 (52)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567888888888988877776666654
No 39
>KOG4385 consensus Predicted forkhead transcription factor [Transcription]
Probab=26.37 E-value=1.4e+02 Score=29.67 Aligned_cols=42 Identities=26% Similarity=0.415 Sum_probs=28.5
Q ss_pred CCCCChhH---hhCCCCCCCCC---ChHHHHHHHHHhHHHHHHHHHHH
Q 027328 53 AQRRPWAE---LADRSAFSKPE---SFSEATLRIRKNYSYFRVNYLTV 94 (225)
Q Consensus 53 ~~~RPW~E---F~d~~~fs~P~---s~sea~~Ri~~NL~YF~~NY~li 94 (225)
...||=-+ ++...-+.-|+ ++.|..+=..+-+.|||-|=.--
T Consensus 365 ~dvRPPfTYAsLIRqAIlESpdkQLTLNEIY~WFTrtFAYFRRNaATW 412 (581)
T KOG4385|consen 365 ADVRPPFTYASLIRQAILESPDKQLTLNEIYNWFTRTFAYFRRNAATW 412 (581)
T ss_pred cccCCchhHHHHHHHHHhcCchhhccHHHHHHHHHHHHHHHhccchhH
Confidence 45666443 34444455565 78888888888899999986543
No 40
>PF11992 DUF3488: Domain of unknown function (DUF3488); InterPro: IPR021878 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with PF01841 from PFAM. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices.
Probab=26.28 E-value=5e+02 Score=23.64 Aligned_cols=6 Identities=17% Similarity=0.113 Sum_probs=2.4
Q ss_pred cchhHH
Q 027328 141 SERETL 146 (225)
Q Consensus 141 s~~~~~ 146 (225)
.|..+.
T Consensus 100 RD~~~l 105 (325)
T PF11992_consen 100 RDYYQL 105 (325)
T ss_pred ccHHHH
Confidence 344333
No 41
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=25.50 E-value=6.4e+02 Score=24.60 Aligned_cols=17 Identities=6% Similarity=0.004 Sum_probs=12.4
Q ss_pred ChHHHHHHHHHhHHHHH
Q 027328 72 SFSEATLRIRKNYSYFR 88 (225)
Q Consensus 72 s~sea~~Ri~~NL~YF~ 88 (225)
+.++..+|+.+.+...+
T Consensus 91 ~~g~i~srl~~Dv~~i~ 107 (569)
T PRK10789 91 RTGDLMARATNDVDRVV 107 (569)
T ss_pred CHHHHHHHHHHhHHHHH
Confidence 45799999977765554
No 42
>PF03522 KCl_Cotrans_1: K-Cl Co-transporter type 1 (KCC1); InterPro: IPR018491 The K-Cl co-transporter (KCC) mediates the coupled movement of K+ and Cl- ions across the plasma membrane of many animal cells. This transport is involved in the regulatory volume decrease in response to cell swelling in red blood cells, and has been proposed to play a role in the vectorial movement of Cl- across kidney epithelia. The transport process involves one for one electroneutral movement of K+ together with Cl-, and, in all known mammalian cells, the net movement is outward []. In neurones, it appears to play a unique role in maintaining low intracellular Cl-concentration, which is required for the functioning of Cl- dependent fast synaptic inhibition, mediated by certain neurotransmitters, such as gamma-aminobutyric acid (GABA) and glycine. Three isoforms of the K-Cl co-transporter have been described, termed KCC1 KCC2, and KCC3, containing 1085, 1116 and 1150 amino acids, respectively. They are predicted to have 12 transmembrane (TM) regions in a central hydrophobic domain, together with hydrophilic N- and C-termini that are likely cytoplasmic. Comparison of their sequences with those of other ion-tranporting membrane proteins reveals that they are part of a new superfamily of cation-chloride co-transporters, which includes the Na-Cl and Na-K-2Cl co-transporters. KCC1 and KCC3 are widely expressed in human tissues, while KCC2 is are expressed only in brain neurones, making it likely that this is the isoform responsible for maintaining low Cl- concentration in neurones [, , ]. KCC1 is widely expressed in human tissues, and when heterologously expressed, possesses the functional characteristics of the well-studied red blood cell K-Cl co-transporter, including stimulation by both swelling and N-ethylmaleimide. Several splice variants have also been identified. KCC3 is widely expressed in human tissues and, like KCC1, is stimulated by both swelling and N-ethylmaleimide. The induction of KCC3 is up-regulated by vascular endothelial growth factor and down-regulated by tumour necrosis factor. Defects in KCC3 are linked to agenesis of the corpus callosum with peripheral neuropathy []. This disorder is characterised by severe progressive sensorimotor neuropathy, mental retardation, dysmorphic features and complete or partial agenesis of the corpus callosum.; GO: 0005215 transporter activity, 0006811 ion transport, 0016020 membrane
Probab=24.77 E-value=31 Score=21.17 Aligned_cols=17 Identities=41% Similarity=0.780 Sum_probs=12.0
Q ss_pred hhccCCCCCCCCCCCCCC
Q 027328 180 HGAFRVPEDLFLDEQEPS 197 (225)
Q Consensus 180 HAafR~p~dlflde~e~~ 197 (225)
|..+|. +.++.||+|+.
T Consensus 5 ~S~lrl-~SlySDeeeE~ 21 (30)
T PF03522_consen 5 HSILRL-ESLYSDEEEET 21 (30)
T ss_pred cceeee-eccccCccccc
Confidence 556666 57788888765
No 43
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=24.64 E-value=3.4e+02 Score=21.49 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=10.8
Q ss_pred cCCCCCeEEcceeccchhHH
Q 027328 127 RPSDQPLVVFGRTFSERETL 146 (225)
Q Consensus 127 R~~~~pl~i~gr~~s~~~~~ 146 (225)
|-+.+|.++.|- +..|..
T Consensus 7 RLN~ePvV~rGl--T~~El~ 24 (111)
T TIGR03750 7 RLNREPVVFRGL--TADELG 24 (111)
T ss_pred hhcCCCceeccc--CHHHHH
Confidence 335688888664 445543
No 44
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=24.50 E-value=4e+02 Score=22.91 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 027328 149 LIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVP 186 (225)
Q Consensus 149 l~~vsi~ll~lt~v~~~lf~~l~i~~~vVllHAafR~p 186 (225)
+.+..++...+.+....++..+..+..-.+++-.+|+.
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~lg~~~~~~ 81 (290)
T PF09991_consen 44 LLAAAVLLALFGGPVSALFYLLFFGLPGLVLGYLLRKK 81 (290)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33333333444554555555555555555555555554
No 45
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=23.79 E-value=2.9e+02 Score=20.07 Aligned_cols=32 Identities=19% Similarity=0.117 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027328 148 VLIVLSIFVFFLTSVGSILISAVMVGAGLICA 179 (225)
Q Consensus 148 ~l~~vsi~ll~lt~v~~~lf~~l~i~~~vVll 179 (225)
+..+++.+.-|++.-....+.+.+++++++++
T Consensus 19 ~~~iisfi~Gy~~q~~~~~~~~~~~g~~~~~l 50 (76)
T PF06645_consen 19 ISAIISFIVGYITQSFSYTFYIYGAGVVLTLL 50 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445546666666666666666655554
No 46
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=23.36 E-value=2.6e+02 Score=20.79 Aligned_cols=27 Identities=4% Similarity=0.007 Sum_probs=14.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhhH
Q 027328 82 KNYSYFRVNYLTVVAVVIAFSLITNPF 108 (225)
Q Consensus 82 ~NL~YF~~NY~li~~~l~~~~Ll~~P~ 108 (225)
+|-...-...++++++.+++..++...
T Consensus 3 ~~w~~~l~~l~~~~l~~~lvG~~~g~~ 29 (90)
T PF11808_consen 3 NSWRRELWRLLLLLLAAALVGWLFGHL 29 (90)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 334444445566666666666665553
No 47
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=22.89 E-value=1.8e+02 Score=21.25 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhhccCCCCCCCCC
Q 027328 170 VMVGAGLICAHGAFRVPEDLFLD 192 (225)
Q Consensus 170 l~i~~~vVllHAafR~p~dlfld 192 (225)
+.+.+.+...=.+|.++|++-.|
T Consensus 51 ~~i~~~~p~~~~g~~k~~gl~~e 73 (93)
T PF12666_consen 51 IMIPIALPFAFLGFFKKDGLPLE 73 (93)
T ss_pred HHHHHHHHHHHhHhhhhcCCCHH
Confidence 33344444444556666665444
No 48
>CHL00114 psbX photosystem II protein X; Reviewed
Probab=22.06 E-value=83 Score=20.49 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 027328 160 TSVGSILISAVMVGAGLICAH 180 (225)
Q Consensus 160 t~v~~~lf~~l~i~~~vVllH 180 (225)
|....+++|++..|.+++.+-
T Consensus 2 TpSLsnF~~SL~~Ga~ivvip 22 (39)
T CHL00114 2 TPSLSAFINSLLLGAIIVVIP 22 (39)
T ss_pred ChhHHHHHHHHHHHHHHhHHH
Confidence 445678888888888776643
No 49
>PF12264 Waikav_capsid_1: Waikavirus capsid protein 1; InterPro: IPR024379 This entry represents capsid protein 1 of Rice tungro spherical virus [].
Probab=22.03 E-value=53 Score=27.96 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=22.4
Q ss_pred CCCCCCCChHHHHHHHHHhHHHHHH
Q 027328 65 SAFSKPESFSEATLRIRKNYSYFRV 89 (225)
Q Consensus 65 ~~fs~P~s~sea~~Ri~~NL~YF~~ 89 (225)
+.|++|+|+=..++|++.=+.|||.
T Consensus 45 ~~~~lP~DlW~~NsRl~d~msYFQY 69 (197)
T PF12264_consen 45 KTFSLPSDLWAANSRLKDIMSYFQY 69 (197)
T ss_pred eeccCcHHHhhhhhHHHHHHHHhhe
Confidence 3499999999999999999999984
No 50
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=21.99 E-value=1.1e+02 Score=20.75 Aligned_cols=27 Identities=19% Similarity=0.375 Sum_probs=18.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 027328 78 LRIRKNYSYFRVNYLTVVAVVIAFSLI 104 (225)
Q Consensus 78 ~Ri~~NL~YF~~NY~li~~~l~~~~Ll 104 (225)
...+.|+.---.|+-++.+.+++++++
T Consensus 22 ~qa~qnlqelfvnfclilicllli~ii 48 (52)
T PF04272_consen 22 QQARQNLQELFVNFCLILICLLLICII 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778887788888777666665554
No 51
>PRK08238 hypothetical protein; Validated
Probab=21.55 E-value=4.1e+02 Score=25.91 Aligned_cols=75 Identities=21% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHH---------HHHHHhhh----------hHHHHHHHHHHHHHHHHH-----hccCCCCCeEEc
Q 027328 81 RKNYSYFRVNYLTVVAVV---------IAFSLITN----------PFSLLMLVGLLASWIFLY-----LFRPSDQPLVVF 136 (225)
Q Consensus 81 ~~NL~YF~~NY~li~~~l---------~~~~Ll~~----------P~~Llvll~l~~~w~~ly-----~~R~~~~pl~i~ 136 (225)
+++++.|+.+++=.+..+ ++++++++ |..|......+..|.+=| .-+..|+|.+.
T Consensus 379 r~~~~~Y~~~~l~~~~~~~~~~~~~~v~~~~ly~~~~~~~~~~~~~~~l~~~~p~~~~~i~R~~~l~~~~~~~~dP~~~- 457 (479)
T PRK08238 379 KIAGRGYRPSDLPLVLSLGVASGYAAVLVLALYINSDAVRALYRHPQLLWLACPILLYWISRVWLLAHRGEMHDDPVVF- 457 (479)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhcccCCcHHHHHHHHHHHHHHHHHHHHHHcccCCCCceEE-
Q ss_pred ceeccchhHHHHHHHHHHHHHH
Q 027328 137 GRTFSERETLGVLIVLSIFVFF 158 (225)
Q Consensus 137 gr~~s~~~~~~~l~~vsi~ll~ 158 (225)
-++||...+.+++..+.++.
T Consensus 458 --~l~D~~~~~~~~~~~~~~~~ 477 (479)
T PRK08238 458 --ALKDRVSLVVGALCALIFLA 477 (479)
T ss_pred --eeeCHHHHHHHHHHHHHHHH
No 52
>COG5477 Predicted small integral membrane protein [Function unknown]
Probab=21.42 E-value=3.8e+02 Score=20.47 Aligned_cols=34 Identities=21% Similarity=0.124 Sum_probs=20.9
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027328 145 TLGVLIVLS-IFVFFLTSVGSILISAVMVGAGLIC 178 (225)
Q Consensus 145 ~~~~l~~vs-i~ll~lt~v~~~lf~~l~i~~~vVl 178 (225)
+.+.+.... +=+-++.-++.++.|++.++++..+
T Consensus 57 LFisLLgsAyIhLAWlGLvg~nlWwa~alS~~yai 91 (97)
T COG5477 57 LFISLLGSAYIHLAWLGLVGENLWWALALSVVYAI 91 (97)
T ss_pred ehHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 334444433 3334666688999998888865543
No 53
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=21.40 E-value=7.5e+02 Score=24.02 Aligned_cols=20 Identities=5% Similarity=-0.076 Sum_probs=14.5
Q ss_pred ChHHHHHHHHHhHHHHHHHH
Q 027328 72 SFSEATLRIRKNYSYFRVNY 91 (225)
Q Consensus 72 s~sea~~Ri~~NL~YF~~NY 91 (225)
+.++..+|+.+++...+..|
T Consensus 118 ~~g~l~s~~~~dv~~i~~~~ 137 (588)
T PRK11174 118 PAGSWATLVLEQVEDMHDFY 137 (588)
T ss_pred CHHHHHHHHHhhHHHHHHHH
Confidence 45789999987776665554
No 54
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=20.85 E-value=7.7e+02 Score=23.86 Aligned_cols=21 Identities=14% Similarity=-0.056 Sum_probs=15.8
Q ss_pred ChHHHHHHHHHhHHHHHHHHH
Q 027328 72 SFSEATLRIRKNYSYFRVNYL 92 (225)
Q Consensus 72 s~sea~~Ri~~NL~YF~~NY~ 92 (225)
+.+|..+|+.+++...+.+|.
T Consensus 120 ~~g~~~~~~~~d~~~i~~~~~ 140 (582)
T PRK11176 120 STGTLLSRITYDSEQVASSSS 140 (582)
T ss_pred CccHHHHHHHHHHHHHHHHHH
Confidence 568899999888876666654
No 55
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=20.74 E-value=7.5e+02 Score=24.06 Aligned_cols=17 Identities=0% Similarity=-0.050 Sum_probs=10.2
Q ss_pred ChHHHHHHHHHhHHHHH
Q 027328 72 SFSEATLRIRKNYSYFR 88 (225)
Q Consensus 72 s~sea~~Ri~~NL~YF~ 88 (225)
+-+|..+|+.+.+..-+
T Consensus 108 ~~G~l~srl~~Dv~~i~ 124 (555)
T TIGR01194 108 GAHNLIPLLTHDIDQIN 124 (555)
T ss_pred CcchhhHHHhhhHHHHH
Confidence 34677788766554443
No 56
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=20.46 E-value=6.6e+02 Score=22.92 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027328 150 IVLSIFVFFLTSVGSILI 167 (225)
Q Consensus 150 ~~vsi~ll~lt~v~~~lf 167 (225)
..+++.++++.+.+..+|
T Consensus 183 a~~gi~~~~Lv~~vl~lf 200 (274)
T PF12811_consen 183 ATFGIALFYLVNLVLSLF 200 (274)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444445544444444
No 57
>PF04530 Viral_Beta_CD: Viral Beta C/D like family; InterPro: IPR007617 This is a family of ssRNA positive-strand viral proteins. Conserved region is found in the Beta C and Beta D transcripts.
Probab=20.21 E-value=1.3e+02 Score=24.30 Aligned_cols=27 Identities=30% Similarity=0.344 Sum_probs=18.8
Q ss_pred HHHHHHHHh-HHHHHHHHHHHHHHHHHH
Q 027328 75 EATLRIRKN-YSYFRVNYLTVVAVVIAF 101 (225)
Q Consensus 75 ea~~Ri~~N-L~YF~~NY~li~~~l~~~ 101 (225)
|.+.|-..+ +.-|..||.+++..+.++
T Consensus 34 e~t~~~~~~~~sv~~~~y~l~~~~v~~L 61 (122)
T PF04530_consen 34 EMTARRETTFLSVLNDNYVLFVCAVCML 61 (122)
T ss_pred hHhhhhhcchhhhhhhhHHHHHHHHHHH
Confidence 344444444 888999999988776554
Done!