Query 027328
Match_columns 225
No_of_seqs 162 out of 457
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 13:34:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027328.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027328hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kf6_C Fumarate reductase 15 k 67.4 23 0.00078 27.8 7.5 48 101-148 60-111 (130)
2 1fjk_A Cardiac phospholamban; 29.4 60 0.002 21.0 3.4 29 76-104 20-48 (52)
3 3fea_A MDM4 protein; HDMX, HDM 17.1 30 0.001 25.9 0.1 29 56-85 68-96 (100)
4 3b5x_A Lipid A export ATP-bind 14.6 7E+02 0.024 22.9 10.3 20 72-91 120-139 (582)
5 2hdc_A Protein (transcription 13.9 1.1E+02 0.0039 22.3 2.6 20 72-91 24-43 (97)
6 2a07_F Forkhead box protein P2 12.8 80 0.0027 23.0 1.5 20 72-91 25-44 (93)
7 2y1b_A RCSF protein, putative 12.0 98 0.0033 24.1 1.8 24 68-91 66-89 (128)
8 3dac_M MDM4 protein; MDMX, MDM 11.8 50 0.0017 25.8 0.1 28 57-85 78-105 (130)
9 3arc_X Photosystem II PSBX pro 11.7 1.3E+02 0.0045 18.6 2.0 15 163-177 6-20 (39)
10 2yl4_A ATP-binding cassette SU 11.5 6.6E+02 0.023 23.2 7.9 17 72-88 117-133 (595)
No 1
>1kf6_C Fumarate reductase 15 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_C* 1l0v_C* 2b76_C* 3cir_C* 3p4p_C* 3p4q_C* 3p4r_C* 3p4s_C*
Probab=67.36 E-value=23 Score=27.77 Aligned_cols=48 Identities=13% Similarity=0.280 Sum_probs=29.2
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHH----HhccCCCCCeEEcceeccchhHHHH
Q 027328 101 FSLITNPFSLLMLVGLLASWIFL----YLFRPSDQPLVVFGRTFSERETLGV 148 (225)
Q Consensus 101 ~~Ll~~P~~Llvll~l~~~w~~l----y~~R~~~~pl~i~gr~~s~~~~~~~ 148 (225)
+..+.||+.++.-++.+++-++= +.+-++.-++.++|+..+++.+..+
T Consensus 60 v~fl~nPivvilniiaLaa~L~Ha~TwF~l~Pka~~I~v~~~~~~~~~i~~~ 111 (130)
T 1kf6_C 60 VDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKS 111 (130)
T ss_dssp HHHHTSSHHHHHHHHHHHHHHHHHHHHHHHGGGGCCCBSSSSBCCSHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHcchhheeeeCCCcCChHHHHHH
Confidence 45677998777766665442221 1122334568888888888776543
No 2
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=29.39 E-value=60 Score=21.03 Aligned_cols=29 Identities=14% Similarity=0.355 Sum_probs=21.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 027328 76 ATLRIRKNYSYFRVNYLTVVAVVIAFSLI 104 (225)
Q Consensus 76 a~~Ri~~NL~YF~~NY~li~~~l~~~~Ll 104 (225)
.....|.|+.---.|+-++.+.+++++++
T Consensus 20 ~~~qarqnlqelfvnfclilicllli~ii 48 (52)
T 1fjk_A 20 MPQQARQNLQNLFINFCLILIFLLLICII 48 (52)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788888888988887777666654
No 3
>3fea_A MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, protein-protein interaction, metal-binding; HET: PM3 6CW; 1.33A {Homo sapiens} SCOP: a.42.1.0 PDB: 3fe7_A* 3u15_A* 2vyr_A 3lbj_E* 3fdo_A 3dab_A 3jzp_A 3jzo_A 3jzq_A 3eqy_A
Probab=17.08 E-value=30 Score=25.94 Aligned_cols=29 Identities=31% Similarity=0.249 Sum_probs=24.1
Q ss_pred CChhHhhCCCCCCCCCChHHHHHHHHHhHH
Q 027328 56 RPWAELADRSAFSKPESFSEATLRIRKNYS 85 (225)
Q Consensus 56 RPW~EF~d~~~fs~P~s~sea~~Ri~~NL~ 85 (225)
=+..|.++.++|+. ++.+.+..++++||.
T Consensus 68 D~LG~l~G~~sFsv-kdp~~l~~ml~~nLv 96 (100)
T 3fea_A 68 DLLGELLGRQSFSV-KDPSPLYDMLRKNLV 96 (100)
T ss_dssp SHHHHHHTCSEEET-TCCHHHHHHHHHHEE
T ss_pred CccccccCCcceee-cCchHHHHHHHhhce
Confidence 35678899999999 458999999999974
No 4
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=14.64 E-value=7e+02 Score=22.94 Aligned_cols=20 Identities=15% Similarity=-0.094 Sum_probs=13.9
Q ss_pred ChHHHHHHHHHhHHHHHHHH
Q 027328 72 SFSEATLRIRKNYSYFRVNY 91 (225)
Q Consensus 72 s~sea~~Ri~~NL~YF~~NY 91 (225)
+.++..+|+.+.....+..|
T Consensus 120 ~~g~l~~rl~~d~~~i~~~~ 139 (582)
T 3b5x_A 120 STGGLLSRITYDSEQVAGAT 139 (582)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 45789999987776555443
No 5
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=13.94 E-value=1.1e+02 Score=22.30 Aligned_cols=20 Identities=20% Similarity=0.494 Sum_probs=18.0
Q ss_pred ChHHHHHHHHHhHHHHHHHH
Q 027328 72 SFSEATLRIRKNYSYFRVNY 91 (225)
Q Consensus 72 s~sea~~Ri~~NL~YF~~NY 91 (225)
+++|..+-|.+|..||+.|+
T Consensus 24 tL~eIY~~i~~~fpyyr~~~ 43 (97)
T 2hdc_A 24 TLSGICEFISNRFPYYREKF 43 (97)
T ss_dssp CHHHHHHHHHHHCHHHHHHC
T ss_pred CHHHHHHHHHHhchhhccCC
Confidence 78999999999999999875
No 6
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F
Probab=12.81 E-value=80 Score=23.02 Aligned_cols=20 Identities=25% Similarity=0.516 Sum_probs=15.7
Q ss_pred ChHHHHHHHHHhHHHHHHHH
Q 027328 72 SFSEATLRIRKNYSYFRVNY 91 (225)
Q Consensus 72 s~sea~~Ri~~NL~YF~~NY 91 (225)
+++|..+-|.+|..||+.|.
T Consensus 25 tL~eIY~~i~~~fpyyr~~~ 44 (93)
T 2a07_F 25 TLNEIYSWFTRTFAYFRRNA 44 (93)
T ss_dssp CHHHHHHHHHHHHHHHCCCH
T ss_pred cHHHHHHHHHHhCCccccCC
Confidence 67888888888888888753
No 7
>2y1b_A RCSF protein, putative outer membrane protein, signal; phosphorelay, mucoidity, colanic acid; HET: I3C; 2.00A {Escherichia coli} PDB: 2l8y_A
Probab=11.96 E-value=98 Score=24.06 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.2
Q ss_pred CCCCChHHHHHHHHHhHHHHHHHH
Q 027328 68 SKPESFSEATLRIRKNYSYFRVNY 91 (225)
Q Consensus 68 s~P~s~sea~~Ri~~NL~YF~~NY 91 (225)
..|.|.+++..|+|++..+...|=
T Consensus 66 d~Pasis~Ar~~lr~kAa~~gANa 89 (128)
T 2y1b_A 66 DSPPSIPTARKRMQINASKMKANA 89 (128)
T ss_dssp SCCCCHHHHHHHHHHHHHHTTCSE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCE
Confidence 567799999999999999998883
No 8
>3dac_M MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio}
Probab=11.76 E-value=50 Score=25.77 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=23.7
Q ss_pred ChhHhhCCCCCCCCCChHHHHHHHHHhHH
Q 027328 57 PWAELADRSAFSKPESFSEATLRIRKNYS 85 (225)
Q Consensus 57 PW~EF~d~~~fs~P~s~sea~~Ri~~NL~ 85 (225)
+..|.++...||. ++.+.+..++++||.
T Consensus 78 ~LG~llGv~sFSV-kdp~~L~~mL~~NLv 105 (130)
T 3dac_M 78 PLGELLEVGSFSV-KNPSPLYEMLKRNLV 105 (130)
T ss_dssp HHHHHHTSSEEET-TSCHHHHHHHHHHEE
T ss_pred ccccccCCcceee-cCcHHHHHHHHhhee
Confidence 4678899999999 458899999999974
No 9
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=11.69 E-value=1.3e+02 Score=18.64 Aligned_cols=15 Identities=13% Similarity=0.153 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q 027328 163 GSILISAVMVGAGLI 177 (225)
Q Consensus 163 ~~~lf~~l~i~~~vV 177 (225)
..++++++..|.+++
T Consensus 6 L~nFl~Sl~aG~vvv 20 (39)
T 3arc_X 6 LKGFFIGLLSGAVVL 20 (39)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555554433
No 10
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=11.55 E-value=6.6e+02 Score=23.17 Aligned_cols=17 Identities=12% Similarity=0.131 Sum_probs=12.4
Q ss_pred ChHHHHHHHHHhHHHHH
Q 027328 72 SFSEATLRIRKNYSYFR 88 (225)
Q Consensus 72 s~sea~~Ri~~NL~YF~ 88 (225)
+.+|..+|+.+.....+
T Consensus 117 ~~g~l~~r~~~d~~~i~ 133 (595)
T 2yl4_A 117 RTGELINRLSSDTALLG 133 (595)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHH
Confidence 46899999987665444
Done!