Query 027328
Match_columns 225
No_of_seqs 162 out of 457
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 13:34:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027328.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027328hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kf6c_ f.21.2.2 (C:) Fumarate 52.8 16 0.0012 26.8 6.1 49 102-150 61-113 (130)
2 d1kq8a_ a.4.5.14 (A:) HFH-1 (H 20.1 14 0.001 24.3 0.7 20 72-91 18-37 (75)
3 d2ftxb1 d.300.1.2 (B:155-213) 18.1 22 0.0016 22.6 1.2 8 85-92 46-53 (59)
4 d1d5va_ a.4.5.14 (A:) Adipocyt 14.9 27 0.002 23.8 1.2 20 72-91 26-45 (94)
5 d2hdca_ a.4.5.14 (A:) Genesis 14.1 41 0.003 22.9 2.0 21 72-92 24-44 (97)
6 d2axia1 a.42.1.1 (A:25-109) MD 13.4 20 0.0014 24.3 0.1 28 56-84 56-83 (85)
7 d2r6gf1 e.70.1.1 (F:13-260) Ma 13.4 2.1E+02 0.015 22.2 6.6 22 106-127 27-48 (248)
8 d1ttva_ a.42.1.1 (A:) MDM2 {Af 12.2 28 0.002 24.5 0.6 27 57-84 65-91 (107)
9 d2a07f1 a.4.5.14 (F:503-584) F 11.4 45 0.0033 22.0 1.5 20 72-91 24-43 (82)
10 d2c6ya1 a.4.5.14 (A:1-98) Inte 8.2 29 0.0021 23.8 -0.6 12 74-85 45-56 (98)
No 1
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=52.79 E-value=16 Score=26.79 Aligned_cols=49 Identities=14% Similarity=0.289 Sum_probs=28.9
Q ss_pred HHhhhhHHHHHHHHHHHHHHHH----HhccCCCCCeEEcceeccchhHHHHHH
Q 027328 102 SLITNPFSLLMLVGLLASWIFL----YLFRPSDQPLVVFGRTFSERETLGVLI 150 (225)
Q Consensus 102 ~Ll~~P~~Llvll~l~~~w~~l----y~~R~~~~pl~i~gr~~s~~~~~~~l~ 150 (225)
..+.||+.++.-++.+++-++= +.+-++--++.+.|+.+.++.+..++-
T Consensus 61 ~flqnP~vv~lniiaLaa~L~Ha~TwF~l~Pk~m~i~v~~~~~~~~~iv~~~w 113 (130)
T d1kf6c_ 61 DFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLW 113 (130)
T ss_dssp HHHTSSHHHHHHHHHHHHHHHHHHHHHHHGGGGCCCBSSSSBCCSHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhcCccCChHHHHHHHH
Confidence 4456897777766665442221 112233457788888888877655443
No 2
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.14 E-value=14 Score=24.34 Aligned_cols=20 Identities=20% Similarity=0.531 Sum_probs=13.2
Q ss_pred ChHHHHHHHHHhHHHHHHHH
Q 027328 72 SFSEATLRIRKNYSYFRVNY 91 (225)
Q Consensus 72 s~sea~~Ri~~NL~YF~~NY 91 (225)
+++|..+-|.+|..||+.|+
T Consensus 18 tL~eIy~~i~~~fpy~r~~~ 37 (75)
T d1kq8a_ 18 TLAEINEYLMGKFPFFRGSY 37 (75)
T ss_dssp CHHHHHHHHHHHCTTGGGTC
T ss_pred cHHHHHHHHHHhCcccccCC
Confidence 56677777777777776553
No 3
>d2ftxb1 d.300.1.2 (B:155-213) Kinetochore protein Spc24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.05 E-value=22 Score=22.60 Aligned_cols=8 Identities=13% Similarity=1.032 Sum_probs=7.0
Q ss_pred HHHHHHHH
Q 027328 85 SYFRVNYL 92 (225)
Q Consensus 85 ~YF~~NY~ 92 (225)
.||.+||+
T Consensus 46 ~fF~tnYi 53 (59)
T d2ftxb1 46 DFYKTKYI 53 (59)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 69999997
No 4
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.87 E-value=27 Score=23.78 Aligned_cols=20 Identities=15% Similarity=0.325 Sum_probs=15.7
Q ss_pred ChHHHHHHHHHhHHHHHHHH
Q 027328 72 SFSEATLRIRKNYSYFRVNY 91 (225)
Q Consensus 72 s~sea~~Ri~~NL~YF~~NY 91 (225)
+++|..+-|..|..||+.++
T Consensus 26 tL~eIY~~i~~~fpyfr~~~ 45 (94)
T d1d5va_ 26 TLNGIYQFIMDRFPFYRENK 45 (94)
T ss_dssp CHHHHHHHHHHHCTHHHHCC
T ss_pred cHHHHHHHHHHHCCccCccc
Confidence 77888888888888888654
No 5
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=14.09 E-value=41 Score=22.91 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=18.1
Q ss_pred ChHHHHHHHHHhHHHHHHHHH
Q 027328 72 SFSEATLRIRKNYSYFRVNYL 92 (225)
Q Consensus 72 s~sea~~Ri~~NL~YF~~NY~ 92 (225)
+++|..+-|..|..||+.++-
T Consensus 24 tL~eIY~~i~~~fpyfr~~~~ 44 (97)
T d2hdca_ 24 TLSGICEFISNRFPYYREKFP 44 (97)
T ss_dssp CHHHHHHHHHHHCHHHHHHCS
T ss_pred cHHHHHHHHHHhCccccCCCC
Confidence 788999999999999988763
No 6
>d2axia1 a.42.1.1 (A:25-109) MDM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.45 E-value=20 Score=24.35 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=23.8
Q ss_pred CChhHhhCCCCCCCCCChHHHHHHHHHhH
Q 027328 56 RPWAELADRSAFSKPESFSEATLRIRKNY 84 (225)
Q Consensus 56 RPW~EF~d~~~fs~P~s~sea~~Ri~~NL 84 (225)
-|..|.|+...||. ++..++..++++||
T Consensus 56 D~LG~l~gv~sFsV-k~~r~l~~ml~rnL 83 (85)
T d2axia1 56 DLLGDLFGVPSFSV-KEHRKIYTMIYRNL 83 (85)
T ss_dssp SHHHHHHSSSEEET-TCHHHHHHHHHTTE
T ss_pred chHHhhcCCCceee-cCcHHHHHHHHhcc
Confidence 35788999999998 45899999999997
No 7
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=13.37 E-value=2.1e+02 Score=22.21 Aligned_cols=22 Identities=9% Similarity=0.158 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhcc
Q 027328 106 NPFSLLMLVGLLASWIFLYLFR 127 (225)
Q Consensus 106 ~P~~Llvll~l~~~w~~ly~~R 127 (225)
++...++++++.+...|+|+.|
T Consensus 27 ~~~~a~~~~~~~~~~~~vy~s~ 48 (248)
T d2r6gf1 27 EYLFAITTLILSSAGLYIFANR 48 (248)
T ss_dssp CHHHHHHHHHHHHHHHHHHSSS
T ss_pred hHHHHHHHHHHHHheEEEEEcc
Confidence 3444444444455556666543
No 8
>d1ttva_ a.42.1.1 (A:) MDM2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=12.20 E-value=28 Score=24.51 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=23.5
Q ss_pred ChhHhhCCCCCCCCCChHHHHHHHHHhH
Q 027328 57 PWAELADRSAFSKPESFSEATLRIRKNY 84 (225)
Q Consensus 57 PW~EF~d~~~fs~P~s~sea~~Ri~~NL 84 (225)
|..|.|+...||. ++..++..++++||
T Consensus 65 ~LG~llgv~sFsV-ke~r~l~~ml~rnL 91 (107)
T d1ttva_ 65 PLGELFGVQEFSV-KEHRRIYAMISRNL 91 (107)
T ss_dssp HHHHHHTCSCEET-TCHHHHHHHHHTTE
T ss_pred hHHhhcCCCceee-cCcHHHHHHHHhhh
Confidence 5888999999999 55889999999997
No 9
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.42 E-value=45 Score=22.05 Aligned_cols=20 Identities=25% Similarity=0.516 Sum_probs=12.9
Q ss_pred ChHHHHHHHHHhHHHHHHHH
Q 027328 72 SFSEATLRIRKNYSYFRVNY 91 (225)
Q Consensus 72 s~sea~~Ri~~NL~YF~~NY 91 (225)
+++|..+-|.+|..||+.++
T Consensus 24 tL~eIy~~i~~~fpyyr~~~ 43 (82)
T d2a07f1 24 TLNEIYSWFTRTFAYFRRNA 43 (82)
T ss_dssp CHHHHHHHHHHHHHHHCCCH
T ss_pred cHHHHHHHHHHhCcccccCC
Confidence 56666666666666666554
No 10
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.25 E-value=29 Score=23.80 Aligned_cols=12 Identities=33% Similarity=0.218 Sum_probs=6.4
Q ss_pred HHHHHHHHHhHH
Q 027328 74 SEATLRIRKNYS 85 (225)
Q Consensus 74 sea~~Ri~~NL~ 85 (225)
..|.+-|+.||.
T Consensus 45 ~gWkNSIRHnLS 56 (98)
T d2c6ya1 45 KGWQNSIRHNLS 56 (98)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCcchhhchhcc
Confidence 345555555553
Done!