BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027329
(225 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z3Q|A Chain A, Resolution Of The Structure Of The Allergenic And
Antifungal Banana Fruit Thaumatin-Like Protein At 1.7a
Length = 200
Score = 329 bits (844), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 157/201 (78%), Positives = 174/201 (86%), Gaps = 1/201 (0%)
Query: 25 ATFEIRNNCPFTVWAAAVPGGGRQLIRGQTWTINVNPGTKQARIWARTKCTFNAEGRGRC 84
ATFEI N C +TVWAAAVPGGGRQL +GQ+WTINVN GT RIW RT C+F+ GRGRC
Sbjct: 1 ATFEIVNRCSYTVWAAAVPGGGRQLNQGQSWTINVNAGTTGGRIWGRTGCSFDGSGRGRC 60
Query: 85 ETGDCNGLLQCQAYGAPPNTLAEYTLNQFNNLDFYDISLVDGFNVPMDFSPLSGIRCRGI 144
+TGDC G+L C AYG PPNTLAE+ LNQFNNLDF+DISLVDGFNVPMDFSP SG CRGI
Sbjct: 61 QTGDCGGVLSCTAYGNPPNTLAEFALNQFNNLDFFDISLVDGFNVPMDFSPTSG-GCRGI 119
Query: 145 RCAADITGQCPNELRAPGGCNNPCTVFKTDQYCCNSGKCVPTNFSKFFKQRCPNAYSYPK 204
RCAADI GQCP L+APGGCNNPCTVFKTDQYCCNSG C PT++S+FFK+ CP+AYSYPK
Sbjct: 120 RCAADINGQCPGALKAPGGCNNPCTVFKTDQYCCNSGACSPTDYSQFFKRNCPDAYSYPK 179
Query: 205 DDQTSTFTCPGGTNYKVTFCP 225
DDQT+TFTCPGGTNY+V FCP
Sbjct: 180 DDQTTTFTCPGGTNYRVVFCP 200
>pdb|4H8T|A Chain A, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
pdb|4H8T|B Chain B, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
Length = 198
Score = 308 bits (790), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 148/203 (72%), Positives = 169/203 (83%), Gaps = 7/203 (3%)
Query: 25 ATFEIRNNCPFTVWAAAVPGGGRQLIRGQTWTINVNPGTKQARIWARTKCTFNAEGRGRC 84
ATF+I N C +TVWAAA PGGGR+L GQ+WTI VNPGT ARIW RT CTF+A GRG+C
Sbjct: 1 ATFDILNKCTYTVWAAASPGGGRRLDSGQSWTITVNPGTTNARIWGRTSCTFDANGRGKC 60
Query: 85 ETGDCNGLLQCQAYGAPPNTLAEYTLNQFNNLDFYDISLVDGFNVPMDFSPLSGIRCRGI 144
ETGDCNGLL+CQ YG+PPNTLAE+ LNQ NNLD+ DISLVDGFN+PMDFS CRGI
Sbjct: 61 ETGDCNGLLECQGYGSPPNTLAEFALNQPNNLDYIDISLVDGFNIPMDFS-----GCRGI 115
Query: 145 RCAADITGQCPNELRAPGGCNNPCTVFKTDQYCCNS--GKCVPTNFSKFFKQRCPNAYSY 202
+C+ DI GQCP+EL+APGGCNNPCTVFKT++YCC G C PT +SKFFK RCP+AYSY
Sbjct: 116 QCSVDINGQCPSELKAPGGCNNPCTVFKTNEYCCTDGPGSCGPTTYSKFFKDRCPDAYSY 175
Query: 203 PKDDQTSTFTCPGGTNYKVTFCP 225
P+DD+TS FTCP GTNYKVTFCP
Sbjct: 176 PQDDKTSLFTCPSGTNYKVTFCP 198
>pdb|1PCV|A Chain A, Crystal Structure Of Osmotin, A Plant Antifungal Protein
pdb|1PCV|B Chain B, Crystal Structure Of Osmotin, A Plant Antifungal Protein
Length = 205
Score = 291 bits (744), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 142/205 (69%), Positives = 161/205 (78%), Gaps = 4/205 (1%)
Query: 25 ATFEIRNNCPFTVWAAAVP-GGGRQLIRGQTWTINVNPGTKQARIWARTKCTFNAEGRGR 83
AT E+RNNCP+TVWAA+ P GGGR+L RGQTW IN GTK AR+W RT C FNA GRG
Sbjct: 1 ATIEVRNNCPYTVWAASTPIGGGRRLDRGQTWVINAPRGTKMARVWGRTNCNFNAAGRGT 60
Query: 84 CETGDCNGLLQCQAYGAPPNTLAEYTLNQFNNLDFYDISLVDGFNVPMDFSPL--SGIRC 141
C+TGDC G+LQC +G PPNTLAEY L+QF+ LDF+DISLVDGFN+PM F+P SG +C
Sbjct: 61 CQTGDCGGVLQCTGWGKPPNTLAEYALDQFSGLDFWDISLVDGFNIPMTFAPTNPSGGKC 120
Query: 142 RGIRCAADITGQCPNELRAPGGCNNPCTVFKTDQYCCNSGKCVPTNFSKFFKQRCPNAYS 201
I C A+I G+CP ELR PGGCNNPCT F QYCC G C PT FSKFFKQRCP+AYS
Sbjct: 121 HAIHCTANINGECPRELRVPGGCNNPCTTFGGQQYCCTQGPCGPTFFSKFFKQRCPDAYS 180
Query: 202 YPKDDQTSTFTCPGG-TNYKVTFCP 225
YP+DD TSTFTCPGG TNY+V FCP
Sbjct: 181 YPQDDPTSTFTCPGGSTNYRVIFCP 205
>pdb|2I0W|A Chain A, Crystal Structure Analysis Of Np24-I, A Thaumatin-Like
Protein
Length = 207
Score = 289 bits (739), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 140/205 (68%), Positives = 160/205 (78%), Gaps = 4/205 (1%)
Query: 25 ATFEIRNNCPFTVWAAAVP-GGGRQLIRGQTWTINVNPGTKQARIWARTKCTFNAEGRGR 83
AT E+RNNCP+TVWAA+ P GGGR+L RGQTW IN GTK ARIW RT C FNA GRG
Sbjct: 1 ATIEVRNNCPYTVWAASTPIGGGRRLNRGQTWVINAPRGTKMARIWGRTGCNFNAAGRGT 60
Query: 84 CETGDCNGLLQCQAYGAPPNTLAEYTLNQFNNLDFYDISLVDGFNVPMDFSPL--SGIRC 141
C+TGDC G+LQC +G PPNTLAEY L+QF+NLDF+DISLVDGFN+PM F+P SG +C
Sbjct: 61 CQTGDCGGVLQCTGWGKPPNTLAEYALDQFSNLDFWDISLVDGFNIPMTFAPTKPSGGKC 120
Query: 142 RGIRCAADITGQCPNELRAPGGCNNPCTVFKTDQYCCNSGKCVPTNFSKFFKQRCPNAYS 201
I C A+I G+CP L+ PGGCNNPCT F QYCC G C PT SKFFK+RCP+AYS
Sbjct: 121 HAIHCTANINGECPRALKVPGGCNNPCTTFGGQQYCCTQGPCGPTELSKFFKKRCPDAYS 180
Query: 202 YPKDDQTSTFTCPGG-TNYKVTFCP 225
YP+DD TSTFTCPGG TNY+V FCP
Sbjct: 181 YPQDDPTSTFTCPGGSTNYRVVFCP 205
>pdb|1DU5|A Chain A, The Crystal Structure Of Zeamatin.
pdb|1DU5|B Chain B, The Crystal Structure Of Zeamatin
Length = 206
Score = 273 bits (697), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 135/206 (65%), Positives = 152/206 (73%), Gaps = 5/206 (2%)
Query: 25 ATFEIRNNCPFTVWAAAVP-GGGRQLIRGQTWTINVNPGTKQARIWARTKCTFNAEGRGR 83
A F + N CPFTVWAA+VP GGGRQL RG++W I GT ARIWART C F+A GRG
Sbjct: 1 AVFTVVNQCPFTVWAASVPVGGGRQLNRGESWRITAPAGTTAARIWARTGCKFDASGRGS 60
Query: 84 CETGDCNGLLQCQAYGAPPNTLAEYTLNQFNNLDFYDISLVDGFNVPMDFSPLSGIRC-R 142
C TGDC G+LQC YG PNTLAEY L QFNNLDF+DISL+DGFNVPM F P G C R
Sbjct: 61 CRTGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGGSGCSR 120
Query: 143 GIRCAADITGQCPNELRAPGGCNNPCTVFKTDQYCC---NSGKCVPTNFSKFFKQRCPNA 199
G RCA D+ +CP ELR G CNN C VFK D+YCC + C PTN+S++FK +CP+A
Sbjct: 121 GPRCAVDVNARCPAELRQDGVCNNACPVFKKDEYCCVGSAANDCHPTNYSRYFKGQCPDA 180
Query: 200 YSYPKDDQTSTFTCPGGTNYKVTFCP 225
YSYPKDD TSTFTCP GTNYKV FCP
Sbjct: 181 YSYPKDDATSTFTCPAGTNYKVVFCP 206
>pdb|1AUN|A Chain A, Pathogenesis-Related Protein 5d From Nicotiana Tabacum
Length = 208
Score = 270 bits (691), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 129/205 (62%), Positives = 153/205 (74%), Gaps = 4/205 (1%)
Query: 25 ATFEIRNNCPFTVWAAAVP-GGGRQLIRGQTWTINVNPGTKQARIWARTKCTFNAEGRGR 83
FE+ NNCP+TVWAAA P GGGR+L RGQ+W PGTK ARIW RT C F+ GRG
Sbjct: 2 GVFEVHNNCPYTVWAAATPVGGGRRLERGQSWWFWAPPGTKMARIWGRTNCNFDGAGRGW 61
Query: 84 CETGDCNGLLQCQAYGAPPNTLAEYTLNQFNNLDFYDISLVDGFNVPMDFSPLS--GIRC 141
C+TGDC G+L+C+ +G PPNTLAEY LNQF+NLDF+DIS++DGFN+PM F P +C
Sbjct: 62 CQTGDCGGVLECKGWGKPPNTLAEYALNQFSNLDFWDISVIDGFNIPMSFGPTKPGPGKC 121
Query: 142 RGIRCAADITGQCPNELRAPGGCNNPCTVFKTDQYCCNSGKCVPTNFSKFFKQRCPNAYS 201
GI+C A+I G+CP LR PGGCNNPCT F QYCC G C PT S++FKQRCP+AYS
Sbjct: 122 HGIQCTANINGECPGSLRVPGGCNNPCTTFGGQQYCCTQGPCGPTELSRWFKQRCPDAYS 181
Query: 202 YPKDDQTSTFTCPGG-TNYKVTFCP 225
YP+DD TSTFTC T+YKV FCP
Sbjct: 182 YPQDDPTSTFTCTSWTTDYKVMFCP 206
>pdb|3AOK|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin Ii
Length = 207
Score = 255 bits (652), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 129/208 (62%), Positives = 156/208 (75%), Gaps = 10/208 (4%)
Query: 25 ATFEIRNNCPFTVWAAAVPG------GGRQLIRGQTWTINVNPGTKQARIWARTKCTFNA 78
ATFEI N C +TVWAAA G GGRQL G++WTINV PGTK +IWART C F+
Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFDD 60
Query: 79 EGRGRCETGDCNGLLQCQAYGAPPNTLAEYTLNQFNNLDFYDISLVDGFNVPMDFSPLSG 138
GRG C TGDC GLLQC+ +G PP TLAE++LNQ+ D+ DIS + GFNVPMDFSP +
Sbjct: 61 SGRGICRTGDCGGLLQCKRFGRPPTTLAEFSLNQYGK-DYIDISNIKGFNVPMDFSPTT- 118
Query: 139 IRCRGIRCAADITGQCPNELRAP-GGCNNPCTVFKTDQYCCNSGKCVPTNFSKFFKQRCP 197
CRG+RCAADI GQCP +L+AP GGCN+ CTVF+T +YCC +GKC PT +S+FFK+ CP
Sbjct: 119 RGCRGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGKCGPTEYSRFFKRLCP 178
Query: 198 NAYSYPKDDQTSTFTCPGGTNYKVTFCP 225
+A+SY D T T TCPG +NY+VTFCP
Sbjct: 179 DAFSYVLDKPT-TVTCPGSSNYRVTFCP 205
>pdb|1RQW|A Chain A, Thaumatin Structure At 1.05 A Resolution
pdb|2A7I|X Chain X, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2G4Y|A Chain A, Structure Of Thaumatin At 2.0 A Wavelength
pdb|1THU|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|1THW|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|3DZN|A Chain A, Thaumatin By Lb Nanotemplate Method Before High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZP|A Chain A, Thaumatin By Lb Nanotemplate Method After High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZR|A Chain A, Thaumatin By Classical Hanging Drop Method Before High
X-Ray Dose On Esrf Id29 Beamline
pdb|3E0A|A Chain A, Thaumatin By Classical Hanging Drop Method After High
X-Ray Dose On Esrf Id29 Beamline
pdb|4DIY|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DIZ|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DJ0|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4DJ1|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4EK0|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 25 K
pdb|4EKA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 25 K
pdb|4EKB|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 100 K
pdb|4EKH|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 100 K
pdb|4EKO|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 180 K
pdb|4EKT|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 180 K
pdb|4EL2|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 240 K
pdb|4EL3|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 240 K
pdb|4EL7|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 300 K
pdb|4ELA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 300 K
Length = 207
Score = 252 bits (644), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 127/208 (61%), Positives = 156/208 (75%), Gaps = 10/208 (4%)
Query: 25 ATFEIRNNCPFTVWAAAVPG------GGRQLIRGQTWTINVNPGTKQARIWARTKCTFNA 78
ATFEI N C +TVWAAA G GGRQL G++WTINV PGTK +IWART C F+
Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFDD 60
Query: 79 EGRGRCETGDCNGLLQCQAYGAPPNTLAEYTLNQFNNLDFYDISLVDGFNVPMDFSPLSG 138
G G C+TGDC GLL+C+ +G PP TLAE++LNQ+ D+ DIS + GFNVPMDFSP +
Sbjct: 61 SGSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYGK-DYIDISNIKGFNVPMDFSPTT- 118
Query: 139 IRCRGIRCAADITGQCPNELRAP-GGCNNPCTVFKTDQYCCNSGKCVPTNFSKFFKQRCP 197
CRG+RCAADI GQCP +L+AP GGCN+ CTVF+T +YCC +GKC PT +S+FFK+ CP
Sbjct: 119 RGCRGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGKCGPTEYSRFFKRLCP 178
Query: 198 NAYSYPKDDQTSTFTCPGGTNYKVTFCP 225
+A+SY D T T TCPG +NY+VTFCP
Sbjct: 179 DAFSYVLDKPT-TVTCPGSSNYRVTFCP 205
>pdb|1THV|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|2PE7|A Chain A, Thaumatin From Thaumatococcus Danielli In Complex With
Tris- Dipicolinate Europium
pdb|3E3S|A Chain A, Structure Of Thaumatin With The Magic Triangle I3c
pdb|3AL7|A Chain A, Recombinant Thaumatin I At 1.1 A
pdb|3ALD|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin I At
1.10 A
pdb|3VHF|A Chain A, Plant Thaumatin I At Ph 8.0
pdb|3VJQ|A Chain A, Recombinant Thaumatin At Ph 8.0 With Hydrogen Atoms
pdb|3VHG|A Chain A, Recombinant Thaumatin I At Ph 8.0
pdb|3V7V|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V82|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V84|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V87|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V88|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V8A|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCE|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCG|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCH|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCI|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCJ|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCK|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|4DC5|A Chain A, Crystal Structure Of Thaumatin Unexposed To Excessive
Sonicc Imaging Laser Dose.
pdb|4DC6|A Chain A, Crystal Structure Of Thaumatin Exposed To Excessive Sonicc
Imaging Laser Dose
Length = 207
Score = 250 bits (638), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 126/208 (60%), Positives = 155/208 (74%), Gaps = 10/208 (4%)
Query: 25 ATFEIRNNCPFTVWAAAVPG------GGRQLIRGQTWTINVNPGTKQARIWARTKCTFNA 78
ATFEI N C +TVWAAA G GGRQL G++WTINV PGT +IWART C F+
Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDD 60
Query: 79 EGRGRCETGDCNGLLQCQAYGAPPNTLAEYTLNQFNNLDFYDISLVDGFNVPMDFSPLSG 138
G G C+TGDC GLL+C+ +G PP TLAE++LNQ+ D+ DIS + GFNVPMDFSP +
Sbjct: 61 SGSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYGK-DYIDISNIKGFNVPMDFSPTT- 118
Query: 139 IRCRGIRCAADITGQCPNELRAP-GGCNNPCTVFKTDQYCCNSGKCVPTNFSKFFKQRCP 197
CRG+RCAADI GQCP +L+AP GGCN+ CTVF+T +YCC +GKC PT +S+FFK+ CP
Sbjct: 119 RGCRGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGKCGPTEYSRFFKRLCP 178
Query: 198 NAYSYPKDDQTSTFTCPGGTNYKVTFCP 225
+A+SY D T T TCPG +NY+VTFCP
Sbjct: 179 DAFSYVLDKPT-TVTCPGSSNYRVTFCP 205
>pdb|1KWN|A Chain A, 1.2 A Structure Of Thaumatin Crystallized In Gel
pdb|1LXZ|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LY0|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LR2|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1LR3|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1PP3|A Chain A, Structure Of Thaumatin In A Hexagonal Space Group
pdb|1PP3|B Chain B, Structure Of Thaumatin In A Hexagonal Space Group
pdb|2OQN|A Chain A, High Pressure Cryocooling Of Capillary Sample
Cryoprotection And Diffraction Phasing At Long
Wavelengths
pdb|1THI|A Chain A, Crystal Structures Of Two Intensely Sweet Proteins
pdb|2VHR|A Chain A, Atomic Resolution (0.95a) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 4 C
pdb|2VI1|A Chain A, Atomic Resolution (1.04 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 22 C.
pdb|2VI2|A Chain A, Atomic Resolution (1.05 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 4c
pdb|2VI3|A Chain A, Atomic Resolution (0.98 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 20 C
pdb|2VI4|A Chain A, Atomic Resolution (1.10 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 6 C.
pdb|2VU6|A Chain A, Atomic Resolution (0.95 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 19 C.
pdb|2VU7|A Chain A, Atomic Resolution (1.08 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 4 C
pdb|3QY5|A Chain A, Microfluidic Crystallization Of Thaumatin Using The
Crystal Former
pdb|4AXR|A Chain A, Crystal Structure Of Thaumatin From A Auto-Harvested
Crystal
pdb|4BAL|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-
Hydroxymethyltriazoledipicolinate Complex At 1.30 A
Resolution.
pdb|4BAR|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-Hydroxyethyltriazole
Dipicolinate Complex At 1.20 A Resolution.
pdb|3ZEJ|A Chain A, Thaumatin Structure Determined At Room Temperature By
In-Situ Diffraction In Chipx
Length = 207
Score = 248 bits (633), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 125/208 (60%), Positives = 155/208 (74%), Gaps = 10/208 (4%)
Query: 25 ATFEIRNNCPFTVWAAAVPG------GGRQLIRGQTWTINVNPGTKQARIWARTKCTFNA 78
ATFEI N C +TVWAAA G GGRQL G++WTINV PGT +IWART C F+
Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDD 60
Query: 79 EGRGRCETGDCNGLLQCQAYGAPPNTLAEYTLNQFNNLDFYDISLVDGFNVPMDFSPLSG 138
G G C+TGDC GLL+C+ +G PP TLAE++LNQ+ D+ DIS + GFNVPM+FSP +
Sbjct: 61 SGSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYGK-DYIDISNIKGFNVPMNFSPTT- 118
Query: 139 IRCRGIRCAADITGQCPNELRAP-GGCNNPCTVFKTDQYCCNSGKCVPTNFSKFFKQRCP 197
CRG+RCAADI GQCP +L+AP GGCN+ CTVF+T +YCC +GKC PT +S+FFK+ CP
Sbjct: 119 RGCRGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGKCGPTEYSRFFKRLCP 178
Query: 198 NAYSYPKDDQTSTFTCPGGTNYKVTFCP 225
+A+SY D T T TCPG +NY+VTFCP
Sbjct: 179 DAFSYVLDKPT-TVTCPGSSNYRVTFCP 205
>pdb|2BLR|A Chain A, Thaumatin Before A High Dose X-Ray "burn"
pdb|2BLU|A Chain A, Thaumatin After A High Dose X-Ray "burn"
pdb|2VHK|A Chain A, Atomic Resolution (0.94 A) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 22c
pdb|2WBZ|A Chain A, 1.6 A Structure Of Thaumatin Crystallized Without Tartrate
At 4 C
pdb|3N02|A Chain A, Thaumatic Crystals Grown In Loops/micromounts
pdb|3N03|A Chain A, Thaumatin Crystals Grown From Drops
pdb|4AXU|A Chain A, Crystal Structure Of Thaumatin From An Auto-Harvested
Crystal, Control Experiment
Length = 206
Score = 248 bits (632), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 125/208 (60%), Positives = 155/208 (74%), Gaps = 10/208 (4%)
Query: 25 ATFEIRNNCPFTVWAAAVPG------GGRQLIRGQTWTINVNPGTKQARIWARTKCTFNA 78
ATFEI N C +TVWAAA G GGRQL G++WTINV PGT +IWART C F+
Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDD 60
Query: 79 EGRGRCETGDCNGLLQCQAYGAPPNTLAEYTLNQFNNLDFYDISLVDGFNVPMDFSPLSG 138
G G C+TGDC GLL+C+ +G PP TLAE++LNQ+ D+ DIS + GFNVPM+FSP +
Sbjct: 61 SGSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYGK-DYIDISNIKGFNVPMNFSPTT- 118
Query: 139 IRCRGIRCAADITGQCPNELRAP-GGCNNPCTVFKTDQYCCNSGKCVPTNFSKFFKQRCP 197
CRG+RCAADI GQCP +L+AP GGCN+ CTVF+T +YCC +GKC PT +S+FFK+ CP
Sbjct: 119 RGCRGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGKCGPTEYSRFFKRLCP 178
Query: 198 NAYSYPKDDQTSTFTCPGGTNYKVTFCP 225
+A+SY D T T TCPG +NY+VTFCP
Sbjct: 179 DAFSYVLDKPT-TVTCPGSSNYRVTFCP 205
>pdb|2D8O|A Chain A, Structure Of Vil-Thaumatin
Length = 207
Score = 245 bits (625), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 125/208 (60%), Positives = 153/208 (73%), Gaps = 10/208 (4%)
Query: 25 ATFEIRNNCPFTVWAAAVPG------GGRQLIRGQTWTINVNPGTKQARIWARTKCTFNA 78
ATFEI N C +TVWAAA G GGRQL G++WTINV PGT +IWART C F+
Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCXFDD 60
Query: 79 EGRGRCETGDCNGLLQCQAYGAPPNTLAEYTLNQFNNLDFYDISLVDGFNVPMDFSPLSG 138
G G C+TGDC GLL+C+ +G PP TLAE++LNQ D+ DIS + GFNVPM+FSP +
Sbjct: 61 SGSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQXGK-DYIDISNIKGFNVPMNFSPTT- 118
Query: 139 IRCRGIRCAADITGQCPNELRAP-GGCNNPCTVFKTDQYCCNSGKCVPTNFSKFFKQRCP 197
CRG+RCAADI GQCP +L+AP GGCN+ CTVF+T +YCC +GKC PT S+FFK+ CP
Sbjct: 119 RGCRGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGKCGPTEXSRFFKRLCP 178
Query: 198 NAYSYPKDDQTSTFTCPGGTNYKVTFCP 225
+A+SY D T T TCPG +NY+VTFCP
Sbjct: 179 DAFSYVLDKPT-TVTCPGSSNYRVTFCP 205
>pdb|2D8P|A Chain A, Structure Of Hyper-Vil-Thaumatin
Length = 207
Score = 242 bits (617), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 125/208 (60%), Positives = 151/208 (72%), Gaps = 10/208 (4%)
Query: 25 ATFEIRNNCPFTVWAAAVPG------GGRQLIRGQTWTINVNPGTKQARIWARTKCTFNA 78
ATFEI N C TVWAAA G GGRQL G++WTINV PGT +IWART C F+
Sbjct: 1 ATFEIVNRCSXTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCXFDD 60
Query: 79 EGRGRCETGDCNGLLQCQAYGAPPNTLAEYTLNQFNNLDFYDISLVDGFNVPMDFSPLSG 138
G G C+TGDC GLL+C+ +G PP TLAE++LNQ D DIS + GFNVPM+FSP +
Sbjct: 61 SGSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQXGK-DXIDISNIKGFNVPMNFSPTT- 118
Query: 139 IRCRGIRCAADITGQCPNELRAP-GGCNNPCTVFKTDQYCCNSGKCVPTNFSKFFKQRCP 197
CRG+RCAADI GQCP +L+AP GGCN+ CTVF+T +YCC +GKC PT S+FFK+ CP
Sbjct: 119 RGCRGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGKCGPTEXSRFFKRLCP 178
Query: 198 NAYSYPKDDQTSTFTCPGGTNYKVTFCP 225
+A+SY D T T TCPG +NY+VTFCP
Sbjct: 179 DAFSYVLDKPT-TVTCPGSSNYRVTFCP 205
>pdb|2AHN|A Chain A, High Resolution Structure Of A Cherry Allergen Pru Av 2
Length = 222
Score = 154 bits (389), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/223 (40%), Positives = 120/223 (53%), Gaps = 23/223 (10%)
Query: 25 ATFEIRNNCPFTVWAAAVPGG--------GRQLIRGQTWTINVNPGTKQARIWARTKCTF 76
AT +NNCP+ VW + G +L ++ ++ P R WART C+
Sbjct: 1 ATISFKNNCPYMVWPGTLTSDQKPQLSTTGFELASQASFQLDT-PVPWNGRFWARTGCST 59
Query: 77 NAEGRGRCETGDC-NGLLQCQAYGA-PPNTLAEYTLNQFNNLDFYDISLVDGFNVPMDFS 134
+A G+ C T DC +G + C GA PP TLAE+ + DFYD+SLVDGFN+PM +
Sbjct: 60 DASGKFVCATADCASGQVMCNGNGAIPPATLAEFNIPAGGGQDFYDVSLVDGFNLPMSVT 119
Query: 135 PLSGI-RCRGIRCAADITGQCPNELRAPG------GCNNPCTVFKTDQYCCNSGK----- 182
P G C+ C A++ CP+EL+ G C + C F T QYCC +
Sbjct: 120 PQGGTGDCKTASCPANVNAVCPSELQKKGSDGSVVACLSACVKFGTPQYCCTPPQNTPET 179
Query: 183 CVPTNFSKFFKQRCPNAYSYPKDDQTSTFTCPGGTNYKVTFCP 225
C PTN+S+ F CP+AYSY DD+ TFTC GG NY +TFCP
Sbjct: 180 CPPTNYSEIFHNACPDAYSYAYDDKRGTFTCNGGPNYAITFCP 222
>pdb|3ZS3|A Chain A, High Resolution Structure Of Mal D 2, The Thaumatin Like
Food Allergen From Apple
Length = 222
Score = 147 bits (371), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 85/223 (38%), Positives = 116/223 (52%), Gaps = 23/223 (10%)
Query: 25 ATFEIRNNCPFTVWAAAVPGG--------GRQLIRGQTWTINVNPGTKQARIWARTKCTF 76
A NNCP TVW + G G +L + +++ P R W RT+C+
Sbjct: 1 AKITFTNNCPNTVWPGTLTGDQKPQLSLTGFELASKASRSVDA-PSPWSGRFWGRTRCST 59
Query: 77 NAEGRGRCETGDC-NGLLQCQAYGA-PPNTLAEYTLNQFNNLDFYDISLVDGFNVPMDFS 134
+A G+ CET DC +G + C GA PP TL E T+ D+YD+SLVDGFN+PM +
Sbjct: 60 DAAGKFTCETADCGSGQVACNGAGAVPPATLVEITIAANGGQDYYDVSLVDGFNLPMSVA 119
Query: 135 PLSGI-RCRGIRCAADITGQCPNELRAPGG------CNNPCTVFKTDQYCCNS-----GK 182
P G C+ C A++ CP L+ C + C F +YCC
Sbjct: 120 PQGGTGECKPSSCPANVNKVCPAPLQVKAADGSVISCKSACLAFGDSKYCCTPPNNTPET 179
Query: 183 CVPTNFSKFFKQRCPNAYSYPKDDQTSTFTCPGGTNYKVTFCP 225
C PT +S+ F+++CP AYSY DD+ STFTC GG +Y +TFCP
Sbjct: 180 CPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFCP 222
>pdb|3G7M|A Chain A, Structure Of The Thaumatin-Like Xylanase Inhibitor Tlxi
Length = 151
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 69/130 (53%), Gaps = 10/130 (7%)
Query: 25 ATFEIRNNCPFTVWAA-----AVPGGGRQLIRGQTWTINVNPGTKQARIWARTKCTFNAE 79
A I N C FTVW A A GGG +L G +W+++ P IW RT C+F+
Sbjct: 1 APLTITNRCHFTVWPAVALVLAQGGGGTELHPGASWSLD-TPVIGSQYIWGRTGCSFDRA 59
Query: 80 GRGRCETGDCNG-LLQCQAYGAPPNTLAEYTLNQFNNLDFYDISLVDGFNVPMDFSPLSG 138
G+GRC+TGDC G L C A P T+AE ++ Q N + S + GFNVPM+ SG
Sbjct: 60 GKGRCQTGDCGGSSLTCGGNPAVPTTMAEVSVLQ-GNYTYGVTSTLKGFNVPMNLKCSSG 118
Query: 139 --IRCRGIRC 146
+ CR C
Sbjct: 119 DALPCRKAGC 128
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 87 GDCNGLLQCQAYGAPPNTLAEYTLNQFNNLDFYDISLVDGFNVPMDFSP 135
G+ NG +QC+ YGA P A + NL+ I L+ N MD P
Sbjct: 33 GEQNGGMQCKPYGAGPTEPAHPVDERLKNLEPKMIELI--MNEIMDHGP 79
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 102 PNTLAEYTLNQFNNLDFY--DISLVDGFNV-PMDFSPLSGIRCRGIRCAADITGQCPNEL 158
PN +++ + +DF +I VDG N P+D +P GI I + + + P EL
Sbjct: 393 PNIFDAKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL 452
Query: 159 RAPGG 163
+ G
Sbjct: 453 FSTGS 457
>pdb|2FYJ|A Chain A, Nmr Solution Structure Of Calcium-Loaded Lrp Double Module
pdb|2FYL|B Chain B, Haddock Model Of The Complex Between Double Module Of Lrp,
Cr56, And First Domain Of Receptor Associated Protein,
Rap- D1
Length = 82
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 130 PMDFSPLSGIRCRGIRCAADITGQCPNELRAPGGCNNPCTVFKTDQYCCNSGKCVPTNF 188
P FS SG RC I D+ C + C P T F Q+ CN+G+C+ N+
Sbjct: 7 PNQFSCASG-RCIPISWTCDLDDDCGDRSDESASCAYP-TCFPLTQFTCNNGRCININW 63
>pdb|3Q63|A Chain A, X-Ray Crystal Structure Of Protein Mll2253 From
Mesorhizobium Loti, Northeast Structural Genomics
Consortium Target Mlr404.
pdb|3Q63|B Chain B, X-Ray Crystal Structure Of Protein Mll2253 From
Mesorhizobium Loti, Northeast Structural Genomics
Consortium Target Mlr404.
pdb|3Q63|C Chain C, X-Ray Crystal Structure Of Protein Mll2253 From
Mesorhizobium Loti, Northeast Structural Genomics
Consortium Target Mlr404.
pdb|3Q63|D Chain D, X-Ray Crystal Structure Of Protein Mll2253 From
Mesorhizobium Loti, Northeast Structural Genomics
Consortium Target Mlr404.
pdb|3Q63|E Chain E, X-Ray Crystal Structure Of Protein Mll2253 From
Mesorhizobium Loti, Northeast Structural Genomics
Consortium Target Mlr404.
pdb|3Q63|F Chain F, X-Ray Crystal Structure Of Protein Mll2253 From
Mesorhizobium Loti, Northeast Structural Genomics
Consortium Target Mlr404
Length = 151
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 8/80 (10%)
Query: 86 TGDCNGLLQCQAYGAPPNTLAEYTLNQFNNLDFYDISLVDGFNVPMDFSPLSGIRCRGIR 145
+ D G+L C+ PN YT N + +D+ V F + +P G
Sbjct: 54 SADWGGVLDCEVLAVEPNKTLSYTWNLAHQDPAFDLRSVVTFTL----TPTPT----GTH 105
Query: 146 CAADITGQCPNELRAPGGCN 165
+ +G P++ RA GG
Sbjct: 106 LRXEQSGFRPDQRRAYGGAK 125
>pdb|3T7I|A Chain A, Crystal Structure Of Se-Met Rtt107p (Residues 820-1070)
pdb|3T7I|B Chain B, Crystal Structure Of Se-Met Rtt107p (Residues 820-1070)
Length = 256
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 10/58 (17%)
Query: 99 GAPPNTLAEYTLNQFNNLDFYDISLV------DGFNVPMDFSPLSGIRCRGIRCAADI 150
G+P T AE L +FN L YD+ V DGFN +D L+ + GI+ +I
Sbjct: 1 GSPHXTKAEKILARFNELPNYDLKAVCTGCFHDGFN-EVDIEILNQL---GIKIFDNI 54
>pdb|3T7J|A Chain A, Crystal Structure Of Rtt107p (Residues 820-1070)
pdb|3T7J|B Chain B, Crystal Structure Of Rtt107p (Residues 820-1070)
pdb|3T7K|A Chain A, Complex Structure Of Rtt107p And Phosphorylated Histone
H2a
pdb|3T7K|B Chain B, Complex Structure Of Rtt107p And Phosphorylated Histone
H2a
Length = 256
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 10/58 (17%)
Query: 99 GAPPNTLAEYTLNQFNNLDFYDISLV------DGFNVPMDFSPLSGIRCRGIRCAADI 150
G+P T AE L +FN L YD+ V DGFN +D L+ + GI+ +I
Sbjct: 1 GSPHMTKAEKILARFNELPNYDLKAVCTGCFHDGFN-EVDIEILNQL---GIKIFDNI 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.476
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,285,029
Number of Sequences: 62578
Number of extensions: 316076
Number of successful extensions: 651
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 570
Number of HSP's gapped (non-prelim): 28
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)