Query 027329
Match_columns 225
No_of_seqs 136 out of 709
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 08:19:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027329.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027329hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd09218 TLP-PA allergenic/anti 100.0 1.2E-79 2.7E-84 531.7 16.0 198 26-224 1-219 (219)
2 smart00205 THN Thaumatin famil 100.0 8.1E-79 1.8E-83 526.6 16.8 199 27-225 1-218 (218)
3 cd09219 TLP-F thaumatin-like p 100.0 1.7E-78 3.7E-83 526.5 15.7 196 27-225 1-229 (229)
4 PF00314 Thaumatin: Thaumatin 100.0 1.8E-75 4E-80 504.9 8.2 194 31-225 1-213 (213)
5 cd09215 Thaumatin-like the swe 100.0 7E-60 1.5E-64 390.3 14.2 149 27-224 1-157 (157)
6 cd09217 TLP-P thaumatin and al 100.0 4.3E-55 9.3E-60 360.0 14.0 149 27-225 1-151 (151)
7 cd08961 GH64-TLP-SF glycoside 100.0 4.9E-50 1.1E-54 330.5 13.4 144 27-223 1-153 (153)
8 PF04681 Bys1: Blastomyces yea 98.3 1E-05 2.3E-10 67.2 11.9 47 100-147 71-120 (155)
9 cd09216 GH64-LPHase-like glyco 91.8 0.24 5.3E-06 46.4 4.6 76 51-137 61-143 (353)
10 cd09220 GH64-GluB-like glycosi 90.2 0.57 1.2E-05 44.2 5.4 77 51-136 62-145 (369)
11 cd09214 GH64-like glycosyl hyd 72.8 3.6 7.9E-05 38.1 3.3 31 105-137 125-155 (319)
12 PF07172 GRP: Glycine rich pro 69.3 3.5 7.6E-05 31.6 2.0 26 1-27 1-28 (95)
13 cd09214 GH64-like glycosyl hyd 69.0 3.5 7.5E-05 38.2 2.3 37 186-222 276-317 (319)
14 cd09220 GH64-GluB-like glycosi 62.2 8.8 0.00019 36.3 3.6 24 185-208 320-345 (369)
15 cd09216 GH64-LPHase-like glyco 57.7 11 0.00023 35.5 3.3 22 186-207 310-333 (353)
16 TIGR00192 urease_beta urease, 53.4 31 0.00067 26.9 4.7 51 20-71 17-93 (101)
17 cd00407 Urease_beta Urease bet 52.5 28 0.00062 27.1 4.3 51 20-71 17-93 (101)
18 PF08194 DIM: DIM protein; In 50.0 17 0.00037 23.2 2.3 31 4-34 1-33 (36)
19 PRK13202 ureB urease subunit b 46.2 49 0.0011 25.9 4.8 48 23-71 21-94 (104)
20 PRK13203 ureB urease subunit b 45.6 42 0.00091 26.2 4.3 51 20-71 17-93 (102)
21 PF11142 DUF2917: Protein of u 44.0 26 0.00056 24.6 2.7 23 47-69 2-28 (63)
22 PF00947 Pico_P2A: Picornaviru 41.2 22 0.00049 28.8 2.3 38 80-122 83-120 (127)
23 PRK13201 ureB urease subunit b 40.1 62 0.0013 26.5 4.7 51 20-71 17-93 (136)
24 PRK13204 ureB urease subunit b 39.1 63 0.0014 27.1 4.7 52 20-72 40-117 (159)
25 PF00699 Urease_beta: Urease b 36.2 67 0.0015 25.0 4.1 50 20-70 16-91 (100)
26 PRK13198 ureB urease subunit b 35.4 79 0.0017 26.5 4.7 51 20-71 45-121 (158)
27 PRK02710 plastocyanin; Provisi 34.9 1.7E+02 0.0036 22.7 6.4 14 46-59 48-61 (119)
28 PRK13205 ureB urease subunit b 34.1 74 0.0016 26.7 4.3 51 20-71 17-93 (162)
29 PLN00115 pollen allergen group 33.3 50 0.0011 26.3 3.1 41 1-43 1-43 (118)
30 PHA03094 dUTPase; Provisional 33.1 42 0.00091 27.3 2.8 30 46-76 35-70 (144)
31 PF12454 Ecm33: GPI-anchored c 32.5 68 0.0015 20.9 3.1 33 1-33 1-34 (40)
32 PRK13986 urease subunit alpha; 31.3 96 0.0021 27.5 4.8 52 20-72 122-199 (225)
33 PF05991 NYN_YacP: YacP-like N 31.1 16 0.00034 30.3 -0.1 10 123-132 2-11 (166)
34 TIGR03096 nitroso_cyanin nitro 30.6 1.2E+02 0.0026 24.8 5.0 22 47-69 94-115 (135)
35 PRK13192 bifunctional urease s 30.0 1E+02 0.0022 27.0 4.7 51 20-71 126-202 (208)
36 PRK01904 hypothetical protein; 29.3 33 0.00071 29.8 1.6 29 4-32 1-29 (219)
37 PF12988 DUF3872: Domain of un 27.3 19 0.00041 29.6 -0.2 34 20-58 18-53 (137)
38 PF13978 DUF4223: Protein of u 27.2 82 0.0018 21.8 2.9 24 18-41 16-41 (56)
39 cd05468 pVHL von Hippel-Landau 26.1 1.4E+02 0.003 24.1 4.7 45 23-71 7-56 (141)
40 PF06282 DUF1036: Protein of u 25.6 1.2E+02 0.0027 23.6 4.2 33 25-57 4-44 (115)
41 PF07732 Cu-oxidase_3: Multico 23.4 94 0.002 24.1 3.1 47 23-69 34-94 (117)
42 cd07557 trimeric_dUTPase Trime 21.8 1.1E+02 0.0023 22.2 2.9 29 46-75 13-47 (92)
43 PF11912 DUF3430: Protein of u 21.8 1E+02 0.0023 25.7 3.3 14 117-130 117-130 (212)
44 PF10633 NPCBM_assoc: NPCBM-as 20.8 1.6E+02 0.0035 20.7 3.7 16 22-37 6-21 (78)
45 PF07771 TSGP1: Tick salivary 20.7 71 0.0015 25.5 1.9 28 63-90 51-78 (120)
No 1
>cd09218 TLP-PA allergenic/antifungal thaumatin-like proteins: plant and animal homologs. This subfamily is represented by the thaumatin-like proteins (TLPs), Cherry Allergen Pru Av 2 TLP, Peach PpAZ44 TLP (a propylene-induced TLP in abscission), the Caenorhabditis elegans thaumatin family member (thn-6), and other plant and animal homologs. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Due to their inducible expression by environmental stresses such as pathogen/pest attack, drought and cold, plant TLPs are classified as the pathogenesis-related (PR) protein family 5 (PR5). Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3; Japanese cedar, Cry j3). TLPs are three-domain, crescent-fold structures with either an electronegative, ele
Probab=100.00 E-value=1.2e-79 Score=531.75 Aligned_cols=198 Identities=51% Similarity=1.078 Sum_probs=187.1
Q ss_pred EEEEEcCCCCceeeeeeC--------CCceeecCCCeEEEEcCCCCccceeeeecccccCCCCCcccccCCCCCceeccc
Q 027329 26 TFEIRNNCPFTVWAAAVP--------GGGRQLIRGQTWTINVNPGTKQARIWARTKCTFNAEGRGRCETGDCNGLLQCQA 97 (225)
Q Consensus 26 t~tv~N~C~~tVwp~~~p--------~~g~~L~~G~s~s~~~p~~w~sGriw~RtgCs~~~~g~~~C~TGdCgg~~~C~~ 97 (225)
+|||+|||+||||||+++ ++||+|+||++++|++|++| +|||||||+|+||+.|+++|+||||+|+++|++
T Consensus 1 tfti~N~C~~tVWp~~~~~~g~~~l~~gGf~L~~g~s~~~~vp~~W-sGriWaRTgC~~~~~g~~~C~TGDCgg~l~C~g 79 (219)
T cd09218 1 TFTIYNKCPFTVWPGILGNAGHPQLGGGGFELAPGQSRTIDAPSGW-SGRFWGRTGCSFDSSGKGSCATGDCGGGLECNG 79 (219)
T ss_pred CEEEEECCCCCccceecCCCCCCCCCCCCEEcCCCCeEEEeCCCCc-ceeeeeccCCCCCCCCccccccCCCCCeeecCC
Confidence 599999999999999975 37999999999999999999 799999999999999999999999999999997
Q ss_pred -CCCCCcceeeeeeccCCCcceeeecccCCcCCceeeeecCCC-ccccccccccccCCCCCCCCCC------CCccCCcc
Q 027329 98 -YGAPPNTLAEYTLNQFNNLDFYDISLVDGFNVPMDFSPLSGI-RCRGIRCAADITGQCPNELRAP------GGCNNPCT 169 (225)
Q Consensus 98 -~g~~paTlaEftl~~~~~~d~YDVSlVdG~NlP~~i~p~~~~-~C~~~~C~~dl~~~CP~~l~~~------~gC~SaC~ 169 (225)
.|.||+|||||||++.+++|||||||||||||||+|+|+++. .|+..+|.+|||+.||.||+++ .||+|||.
T Consensus 80 ~~g~pP~TlaEftl~~~~~~d~YdvSlVdGfNlP~~i~P~~~~~~C~~~~C~~din~~CP~~L~v~~~~g~vv~C~SaC~ 159 (219)
T cd09218 80 AGGAPPATLAEFTLGGSGGQDFYDVSLVDGYNLPVSITPQGGSGGCRTAGCVADLNAVCPAELQVKNSGGRVVACKSACL 159 (219)
T ss_pred CCCCCCceeEEEEeccCCCCcceeeeeeccccCCEEEEecCCCCCCCCCcccCcccccCCHHHeeccCCCcEeeecCHHH
Confidence 557999999999998778999999999999999999998643 4999999999999999999985 27999999
Q ss_pred ccCCCccccCCC-----CCCCchhHHHHHhhCCcccCCCCCCCCCceeeCCCCceEEEec
Q 027329 170 VFKTDQYCCNSG-----KCVPTNFSKFFKQRCPNAYSYPKDDQTSTFTCPGGTNYKVTFC 224 (225)
Q Consensus 170 ~~~~~~~CC~g~-----~C~pt~ys~~fK~~CP~AYsya~Dd~tstftC~~~~~y~ItFC 224 (225)
+|++|||||+|. +|+|++||++||++||+||+|||||++|+|+|+++++|+||||
T Consensus 160 ~f~~~~~CC~g~~~~p~~C~pt~ys~~FK~~CP~Aysya~Dd~~s~~tC~~~~~Y~I~FC 219 (219)
T cd09218 160 AFNTDEYCCRGAYGTPETCKPTTYSRLFKNACPQAYSYAYDDPTSTFTCSSGANYVITFC 219 (219)
T ss_pred hhCCccceecCCCCCCCcCCCcchhHHHHhhCccccccCCCCCCcceEcCCCCCEEEEeC
Confidence 999999999986 7999999999999999999999999999999998899999999
No 2
>smart00205 THN Thaumatin family. The thaumatin family gathers proteins related to plant pathogenesis. The thaumatin family includes very basic members with extracellular and vacuolar localization. Thaumatin itsel is a potent sweet-tasting protein. Several members of this family display significant in vitro activity of inhibiting hyphal growth or spore germination of various fungi probably by a membrane permeabilizing mechanism.
Probab=100.00 E-value=8.1e-79 Score=526.56 Aligned_cols=199 Identities=65% Similarity=1.317 Sum_probs=188.2
Q ss_pred EEEEcCCCCceeeeeeC-------CCceeecCCCeEEEEcCCCCccceeeeecccccCCCCCcccccCCCCCceeccc-C
Q 027329 27 FEIRNNCPFTVWAAAVP-------GGGRQLIRGQTWTINVNPGTKQARIWARTKCTFNAEGRGRCETGDCNGLLQCQA-Y 98 (225)
Q Consensus 27 ~tv~N~C~~tVwp~~~p-------~~g~~L~~G~s~s~~~p~~w~sGriw~RtgCs~~~~g~~~C~TGdCgg~~~C~~-~ 98 (225)
|||+|||+||||||+++ ++||+|+||+++++.+|++|++|||||||+|++|+.|+++|+||||+|.++|++ .
T Consensus 1 fti~N~C~~tVWp~~~~~g~~~l~~gGf~L~~g~s~~~~~p~~w~sGriW~RtgC~~d~~G~~~C~TGdCgG~l~C~g~g 80 (218)
T smart00205 1 FEFVNNCPYTVWAAALPSGKPQLSGGGFELNSGASWQLDAPPGTKMGRIWARTGCNFDASGRGRCATGDCGGVLQCNGWG 80 (218)
T ss_pred CEEEcCCCCceeceecCCCCcccCCCcEecCCCCeEEEECCCCCccceEecccCCCcCCCCccccccCCCCCeeecCCCC
Confidence 79999999999999975 379999999999999999997799999999999999999999999999999998 5
Q ss_pred CCCCcceeeeeeccCCCcceeeecccCCcCCceeeeecCCC-ccccccccccccCCCCCCCCCC-----CCccCCccccC
Q 027329 99 GAPPNTLAEYTLNQFNNLDFYDISLVDGFNVPMDFSPLSGI-RCRGIRCAADITGQCPNELRAP-----GGCNNPCTVFK 172 (225)
Q Consensus 99 g~~paTlaEftl~~~~~~d~YDVSlVdG~NlP~~i~p~~~~-~C~~~~C~~dl~~~CP~~l~~~-----~gC~SaC~~~~ 172 (225)
+.||+|||||||++.+++|||||||||||||||+|.|+++. .|+..+|.+|||..||.||+++ .||+|+|.+|+
T Consensus 81 g~pP~TlaEftl~~~~~~d~YdvSlVdGfNlP~~i~P~~~~~~C~~~~C~~d~~~~CP~~L~v~~~g~vv~C~SaC~~f~ 160 (218)
T smart00205 81 GRPPATLAEFALNQFGGLDFYDVSLVDGFNIPMSFTPTGGSGDCKGAGCTADLNAQCPAELQVPGGGSVVACNSACTVFG 160 (218)
T ss_pred CCCCcceeEEEecCCCCcceeeeEeeccccCCEEEEecCCCCCcCCCcCCCcccccCCHHHccccCCcccccccHhhccC
Confidence 59999999999998778999999999999999999997544 4999999999999999999986 36999999999
Q ss_pred CCccccCCC-----CCCCchhHHHHHhhCCcccCCCCCCCCCceeeCCCCceEEEecC
Q 027329 173 TDQYCCNSG-----KCVPTNFSKFFKQRCPNAYSYPKDDQTSTFTCPGGTNYKVTFCP 225 (225)
Q Consensus 173 ~~~~CC~g~-----~C~pt~ys~~fK~~CP~AYsya~Dd~tstftC~~~~~y~ItFCP 225 (225)
+|||||+|. +|+|+.||++||++||+||+||+||.+++|+|+++++|+|+|||
T Consensus 161 ~~~yCC~g~~~~~~~C~pt~ys~~FK~~CP~Aysya~Dd~~st~tC~~~~~y~V~FCp 218 (218)
T smart00205 161 TDQYCCTGGQNNPETCPPTNYSRIFKNACPDAYSYAYDDPTSTFTCTGGTNYKVTFCP 218 (218)
T ss_pred CCcceecCCCCCCCCCCCcchhhHHhhhCCccccCccCCCCcceEccCCCCEEEEeCC
Confidence 999999996 89999999999999999999999999999999998999999998
No 3
>cd09219 TLP-F thaumatin-like proteins: basidiomycete homologs. This subfamily is represented by Lentinula edodes TLG1, a thaumatin-like protein (TLP), as well as, other basidiomycete homologs. In general, TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. TLG1 TLP is involved in lentinan degradation and fruiting body senescence. TLG1 expressed in Escherichia coli and Aspergillus oryzae exhibited beta-1,3-glucanase activity and demonstrated lentinan degrading activity. TLG1 is proposed to be involved in lentinan and cell wall degradation during senescence following harvest and spore diffusion. TLPs are three-domain, crescent-fold structures with either an electronegative, electropositive, or neutral cleft occurring between domains I and II. TLG1 from Lentinula edodes contains the required acidic amino acids conserved in the appropriate positions to possess an electronegative cleft. TLPs within this subfamily contain 13 conserve
Probab=100.00 E-value=1.7e-78 Score=526.55 Aligned_cols=196 Identities=38% Similarity=0.806 Sum_probs=182.6
Q ss_pred EEEEcCCCCceeeeeeC-----------CCceeecCCCeEEEEcCCCCccceeeeecccccC-CCCCcccccCCCCCcee
Q 027329 27 FEIRNNCPFTVWAAAVP-----------GGGRQLIRGQTWTINVNPGTKQARIWARTKCTFN-AEGRGRCETGDCNGLLQ 94 (225)
Q Consensus 27 ~tv~N~C~~tVwp~~~p-----------~~g~~L~~G~s~s~~~p~~w~sGriw~RtgCs~~-~~g~~~C~TGdCgg~~~ 94 (225)
|||+|||+||||||+++ .+||+|+||++++|.+|++|++|||||||+|+|| ..|+++|+||||+|+++
T Consensus 1 fti~N~C~~TVWPgi~~~~g~~~~~~~~~gGf~L~pg~s~~i~vp~~w~~GRiWgRTgC~~d~~~G~~~C~TGdCgg~l~ 80 (229)
T cd09219 1 FTVKNSCSSTIWPAMFTGGNFIDAVPDQATGWEAAAGGQVEFTVPDNWTAGRIWARTGCDFSDNPGPFSCLTGGCGGGLT 80 (229)
T ss_pred CEEEeCCCCCccceecCCCCCccccccCCCCEecCCCCeEEEECCCCCcccceeccCCCCCCCCCCCCCcccCCCCceee
Confidence 79999999999999963 3799999999999999999955999999999999 46899999999999999
Q ss_pred cccCCCCCcceeeeeeccCCCcceeeecccCCcCCceeeeecCCCccccccccccccCCCCCCCCCC-------CCccCC
Q 027329 95 CQAYGAPPNTLAEYTLNQFNNLDFYDISLVDGFNVPMDFSPLSGIRCRGIRCAADITGQCPNELRAP-------GGCNNP 167 (225)
Q Consensus 95 C~~~g~~paTlaEftl~~~~~~d~YDVSlVdG~NlP~~i~p~~~~~C~~~~C~~dl~~~CP~~l~~~-------~gC~Sa 167 (225)
|++.+.||+|||||||++. ++|||||||||||||||+|.|.. .|+..+|.+|||..||+||+++ .||+|+
T Consensus 81 C~~~g~pP~TlaEftL~~~-~~D~YdVSlVDGfNlP~~i~P~~--~C~~~~C~~dln~~CP~~L~v~~~~~g~~vaC~Sa 157 (229)
T cd09219 81 CENSDQPPASLAEFTLIGG-KEDNYDISLVDGFNIPLNITNNI--TCPQPQCQVDLNVLCPALLRGPLDQKGVNLGCISP 157 (229)
T ss_pred cCCCCCCCcceeeEEecCC-CCceeEEEEecccccceEeccCC--CCCCCcccCCCcccCCHHHccccCCCCccceecCH
Confidence 9988899999999999976 78999999999999999999943 5999999999999999999985 379999
Q ss_pred ccc-cCC--CccccCCC-----CCCC--chhHHHHHhhCCcccCCCCCCCC--CceeeCC--CCceEEEecC
Q 027329 168 CTV-FKT--DQYCCNSG-----KCVP--TNFSKFFKQRCPNAYSYPKDDQT--STFTCPG--GTNYKVTFCP 225 (225)
Q Consensus 168 C~~-~~~--~~~CC~g~-----~C~p--t~ys~~fK~~CP~AYsya~Dd~t--stftC~~--~~~y~ItFCP 225 (225)
|.+ |++ |||||+|. +|+| ++||++||++||+||||||||.+ |+|||++ +++|+|||||
T Consensus 158 C~a~~~~~~~~yCC~g~~~~p~~C~p~~t~ys~~FK~~CP~AYSYa~Dd~ssts~ftC~~~~~~~Y~ItFCP 229 (229)
T cd09219 158 CNRDKNHDDSPSCCTGSHNKPETCPQSGVGNYAYFKDNCPTAYAYAYDEKSHTALWTCGDSKSADYTVTFCP 229 (229)
T ss_pred hhhhccCCCCcccccCCCCCcCCCCCCcccHhHHHHhhCcccccccccCccccccEEeCCCCCCCEEEEeCC
Confidence 999 655 99999986 7999 88999999999999999999999 6799998 7899999998
No 4
>PF00314 Thaumatin: Thaumatin family; InterPro: IPR001938 Thaumatin [] is an intensely sweet-tasting protein, 100 000 times sweeter than sucrose on a molar basis [] found in berries from Thaumatococcus daniellii, a tropical flowering plant known as Katemfe, it is induced by attack by viroids, which are single-stranded unencapsulated RNA molecules that do not code for protein. Thaumatin consists of about 200 residues and contains 8 disulphide bonds. Like other PR proteins, thaumatin is predicted to have a mainly beta structure, with a high content of beta-turns and little helix []. Several stress-induced proteins of plants have been found to be related to thaumatins: A maize alpha-amylase/trypsin inhibitor Two tobacco pathogenesis-related proteins: PR-R major and minor forms,which are induced after infection with viruses Salt-induced protein NP24 from tomato Osmotin, a salt-induced protein from tobacco[] Osmotin-like proteins OSML13, OSML15 and OSML81 from potato [] P21, a leaf protein from soybean PWIR2, a leaf protein from wheat [] Zeamatin, a maize antifunal protein [] This protein is also referred to as pathogenesis-related group 5 (PR5), as many thaumatin-like proteins accumulate in plants in response to infection by a pathogen and possess antifungal activity []. The proteins are involved in systematically acquired resistance and stress response in plants, although their precise role is unknown [].; PDB: 3G7M_A 2I0W_A 1AUN_A 1Z3Q_A 1KWN_A 2OQN_A 1THW_A 1LY0_A 2D8O_A 1LR3_A ....
Probab=100.00 E-value=1.8e-75 Score=504.93 Aligned_cols=194 Identities=59% Similarity=1.214 Sum_probs=161.2
Q ss_pred cCCCCceeeeeeCC--------CceeecCCCeEEEEcCCCCccceeeeecccccCCCCCcccccCCCCCceeccc-CCCC
Q 027329 31 NNCPFTVWAAAVPG--------GGRQLIRGQTWTINVNPGTKQARIWARTKCTFNAEGRGRCETGDCNGLLQCQA-YGAP 101 (225)
Q Consensus 31 N~C~~tVwp~~~p~--------~g~~L~~G~s~s~~~p~~w~sGriw~RtgCs~~~~g~~~C~TGdCgg~~~C~~-~g~~ 101 (225)
|||+||||||+++. +||+|+||+++++.+|++| +|||||||+|++++.|+++|+||||+|+++|.+ .+.+
T Consensus 1 N~C~~tvWp~~~~~~~~~~~~~~g~~l~~g~s~~~~~p~~W-sGriW~RTgC~~~~~g~~~C~TGdCgg~~~C~~~~~~~ 79 (213)
T PF00314_consen 1 NNCPFTVWPAILPNAGSPPLSTGGFRLDPGQSWSLTVPAGW-SGRIWARTGCSFDGGGRGSCATGDCGGRLECNGAGGSP 79 (213)
T ss_dssp E-SSS-EEEEEETTTSSSEEEEEEEEE-TTEEEEEE--TTE-SEEEEEEEEEEEETTSBEEEEES-STTBSSSSS----S
T ss_pred CcCCCCeeeeecCCCCCCcCCCCCEEcCCCCeEEEecCccc-cceeeecCCCcCCCCCCcccccCCCCcccccccccCcc
Confidence 89999999999862 6899999999999999999 899999999999999999999999999999998 5689
Q ss_pred CcceeeeeeccCCCcceeeecccCCcCCceeeeecCCCccccccccccccCCCCCCCCCC-----CCccCCccccCCCcc
Q 027329 102 PNTLAEYTLNQFNNLDFYDISLVDGFNVPMDFSPLSGIRCRGIRCAADITGQCPNELRAP-----GGCNNPCTVFKTDQY 176 (225)
Q Consensus 102 paTlaEftl~~~~~~d~YDVSlVdG~NlP~~i~p~~~~~C~~~~C~~dl~~~CP~~l~~~-----~gC~SaC~~~~~~~~ 176 (225)
|+|||||+|++.+++|||||||||||||||+|+|.++..|+..+|.+||+..||.||+++ .+|+|+|.+|++++|
T Consensus 80 P~TlaEftl~~~~~~d~YDVSlVdGfNlP~~i~p~~~~~C~~~~C~~di~~~CP~~l~v~~~~~vv~C~SaC~~~~~~~~ 159 (213)
T PF00314_consen 80 PATLAEFTLNGSNGQDFYDVSLVDGFNLPMSISPSGGSNCRSPGCPADINSWCPSELQVKNSDGVVGCKSACDAFNTDEY 159 (213)
T ss_dssp S--EEEEEEEETTTEEEEEEESTT-BSS-EEEEESSSSSSSSEEE-S-HHHHE-CCCEEETTSSTTEE--HHHHH-SHHH
T ss_pred cceeEEEEeccCCCcceEEEEeeeeecCChhhccCCCCccccccCccccccccchhheeeccCceeeecccceeccCCcc
Confidence 999999999877899999999999999999999997667999999999999999999983 479999999999999
Q ss_pred ccCCC-----CCCCchhHHHHHhhCCcccCCCCCCCCCceeeCCCCceEEEecC
Q 027329 177 CCNSG-----KCVPTNFSKFFKQRCPNAYSYPKDDQTSTFTCPGGTNYKVTFCP 225 (225)
Q Consensus 177 CC~g~-----~C~pt~ys~~fK~~CP~AYsya~Dd~tstftC~~~~~y~ItFCP 225 (225)
||+|. +|++++|+++||++||+||+|||||.+|+|+|+++++|+|||||
T Consensus 160 CC~g~~~~~~~C~~~~ys~~fK~~CP~AYsya~DD~~s~ftC~~~~~y~ItFCP 213 (213)
T PF00314_consen 160 CCRGAYNTPDTCPPTNYSQFFKKACPDAYSYAYDDQTSTFTCPAGTNYTITFCP 213 (213)
T ss_dssp HTTCCS-TTSCS---HHHHHHHHH-TTSBSSTTSHTTT-EEEETT-EEEEEEST
T ss_pred ccccccCCCcccccchhhhhhhhhCcccccccccCCCcceECCCCCCEEEEeCc
Confidence 99986 89999999999999999999999999999999999999999999
No 5
>cd09215 Thaumatin-like the sweet-tasting protein, thaumatin, and thaumatin-like proteins involved in host defense. This family is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii and thaumatin-like proteins (TLPs) involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs included in this family are such proteins as zeamatin, found in high concentrations in cereal seeds; osmotin, a salt-induced protein in osmotically stressed plants; and PpAZ44, a propylene-induced TLP in abscission of young fruit. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun
Probab=100.00 E-value=7e-60 Score=390.30 Aligned_cols=149 Identities=57% Similarity=1.092 Sum_probs=137.9
Q ss_pred EEEEcCCCCceeeeeeC-------CCceeecCCCeEEEEcCCCCccceeeeecccccCC-CCCcccccCCCCCceecccC
Q 027329 27 FEIRNNCPFTVWAAAVP-------GGGRQLIRGQTWTINVNPGTKQARIWARTKCTFNA-EGRGRCETGDCNGLLQCQAY 98 (225)
Q Consensus 27 ~tv~N~C~~tVwp~~~p-------~~g~~L~~G~s~s~~~p~~w~sGriw~RtgCs~~~-~g~~~C~TGdCgg~~~C~~~ 98 (225)
|||+|||+||||||+++ ++||+|+||+++++.+|++| +|||||||+|++|+ .|+++|+||||+|+++|++.
T Consensus 1 ~ti~N~C~~tVWPg~~~~~g~~~~~gGf~L~~g~s~~~~~p~~w-sGriWgRTgC~~~~~~g~~~C~TGdCgg~l~C~g~ 79 (157)
T cd09215 1 FTITNRCPYTIWPAIFTQVGKGPYTGGFELNPGETKSFDVSAGW-QGRIWARTNCSFNANSGGNACLTGDCNGGLNCQGT 79 (157)
T ss_pred CEEEcCCCCCeeceecCCCCCCCCCCCEecCCCCeeEEecCCCC-eEeeecccccccCCCCCCCCcccCCCCceeecCCC
Confidence 78999999999999975 47999999999999999999 89999999999998 79999999999999999998
Q ss_pred CCCCcceeeeeeccCCCcceeeecccCCcCCceeeeecCCCccccccccccccCCCCCCCCCCCCccCCccccCCCcccc
Q 027329 99 GAPPNTLAEYTLNQFNNLDFYDISLVDGFNVPMDFSPLSGIRCRGIRCAADITGQCPNELRAPGGCNNPCTVFKTDQYCC 178 (225)
Q Consensus 99 g~~paTlaEftl~~~~~~d~YDVSlVdG~NlP~~i~p~~~~~C~~~~C~~dl~~~CP~~l~~~~gC~SaC~~~~~~~~CC 178 (225)
|.||+|||||||++.+++|||||||||||||||+|+|.+ +.|+..+|.
T Consensus 80 g~pp~TlaEftl~~~~~~d~YdVSlVdG~NlP~~i~P~~-~~C~~~~C~------------------------------- 127 (157)
T cd09215 80 GGPPATLAEFTLSGGGGLDYYDISLVDGYNLPMSITPQP-GECPTPICA------------------------------- 127 (157)
T ss_pred CCCCcceEEEEecCCCCcceeEEEeeccccCCEEEecCC-CCCCCCccc-------------------------------
Confidence 899999999999987788999999999999999999976 337665554
Q ss_pred CCCCCCCchhHHHHHhhCCcccCCCCCCCCCceeeCCCCceEEEec
Q 027329 179 NSGKCVPTNFSKFFKQRCPNAYSYPKDDQTSTFTCPGGTNYKVTFC 224 (225)
Q Consensus 179 ~g~~C~pt~ys~~fK~~CP~AYsya~Dd~tstftC~~~~~y~ItFC 224 (225)
+||+||+|||||++|+|+|+++++|+||||
T Consensus 128 ----------------~Cp~Aysya~Dd~~s~~tC~~~~~y~v~FC 157 (157)
T cd09215 128 ----------------ACPDAYSYAYDDQTSTFTCPGGAGYEVVFC 157 (157)
T ss_pred ----------------cCccccccCCCCCccceECCCCCCEEEEeC
Confidence 299999999999999999999899999999
No 6
>cd09217 TLP-P thaumatin and allergenic/antifungal thaumatin-like proteins: plant homologs. This subfamily is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii, allergenic/antifungal Thaumatin-like proteins (TLPs), and related plant proteins. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs in this subfamily include such proteins as zeamatin, found in high concentrations in cereal seeds, and osmotin, a salt-induced protein in osmotically stressed plants. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3
Probab=100.00 E-value=4.3e-55 Score=360.01 Aligned_cols=149 Identities=69% Similarity=1.361 Sum_probs=137.2
Q ss_pred EEEEcCCCCceeeeeeC-CCceeecCCCeEEEEcCCC-CccceeeeecccccCCCCCcccccCCCCCceecccCCCCCcc
Q 027329 27 FEIRNNCPFTVWAAAVP-GGGRQLIRGQTWTINVNPG-TKQARIWARTKCTFNAEGRGRCETGDCNGLLQCQAYGAPPNT 104 (225)
Q Consensus 27 ~tv~N~C~~tVwp~~~p-~~g~~L~~G~s~s~~~p~~-w~sGriw~RtgCs~~~~g~~~C~TGdCgg~~~C~~~g~~paT 104 (225)
|+|+|||+||||||++| ++||+|+||+++++.+|++ | +|||||||+|++|+.|+++|+||||+|+++|++.+.||+|
T Consensus 1 ~~~~N~C~~tvWp~~~~~~gG~~L~~g~~~~~~~p~~~w-~griW~RTgC~~~~~g~~~C~TGdCgg~l~C~~~g~pp~T 79 (151)
T cd09217 1 FTITNNCGYTVWPAATPVGGGRQLNPGQSWTIDVPAGTA-GGRIWGRTGCSFDASGRGSCQTGDCGGVLSCTGSGKPPAT 79 (151)
T ss_pred CEEEeCCCCcccceEecCCCCEeCCCCCeEEEEcCCCCc-eEEEeeecCCCcCCCCCCcccccCCCCeeecCCCCCCCce
Confidence 68999999999999998 6899999999999999998 6 8999999999999999999999999999999988899999
Q ss_pred eeeeeeccCCCcceeeecccCCcCCceeeeecCCCccccccccccccCCCCCCCCCCCCccCCccccCCCccccCCCCCC
Q 027329 105 LAEYTLNQFNNLDFYDISLVDGFNVPMDFSPLSGIRCRGIRCAADITGQCPNELRAPGGCNNPCTVFKTDQYCCNSGKCV 184 (225)
Q Consensus 105 laEftl~~~~~~d~YDVSlVdG~NlP~~i~p~~~~~C~~~~C~~dl~~~CP~~l~~~~gC~SaC~~~~~~~~CC~g~~C~ 184 (225)
++||||+. +++||||||+||||||||+|.|+++ .|+.++|..
T Consensus 80 l~E~tl~~-~~~d~YdISlVdG~NlP~~i~P~~~-~C~~~~C~~------------------------------------ 121 (151)
T cd09217 80 LAEYTLNQ-SGQDFYDISLVDGFNVPMDFSPTGG-GCHAIPCAA------------------------------------ 121 (151)
T ss_pred eEEEEecC-CCCccEEEEeecccccceEEecCCC-CCCCCcCCC------------------------------------
Confidence 99999986 5789999999999999999999743 377666653
Q ss_pred CchhHHHHHhhCCcccCCCCCCCCCceeeCCCCceEEEecC
Q 027329 185 PTNFSKFFKQRCPNAYSYPKDDQTSTFTCPGGTNYKVTFCP 225 (225)
Q Consensus 185 pt~ys~~fK~~CP~AYsya~Dd~tstftC~~~~~y~ItFCP 225 (225)
+ ||+||+|++|| .++|+|+.+++|+|||||
T Consensus 122 ---------d-C~~ay~~~~D~-~~~~~C~~~~~~~v~fCp 151 (151)
T cd09217 122 ---------N-CPDAYSYPKDP-TTTFTCPGGTNYRIVFCP 151 (151)
T ss_pred ---------C-CchHhcCCCCC-CceEeCCCCCCEEEEeCC
Confidence 1 89999999995 699999999999999998
No 7
>cd08961 GH64-TLP-SF glycoside hydrolase family 64 (beta-1,3-glucanases which produce specific pentasaccharide oligomers) and thaumatin-like proteins. This superfamily includes glycoside hydrolases of family 64 (GH64), these are mostly bacterial beta-1,3-glucanases which cleave long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers and are implicated in fungal cell wall degradation. Also included in this superfamily are thaumatin, the sweet-tasting protein from the African berry Thaumatococcus daniellii, and thaumatin-like proteins (TLPs) which are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Like GH64s, some TLPs also hydrolyze the beta-1,3-glucans of the type commonly found in fungal walls. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. Several members of the plant TLP
Probab=100.00 E-value=4.9e-50 Score=330.55 Aligned_cols=144 Identities=46% Similarity=0.783 Sum_probs=127.7
Q ss_pred EEEEcCCCCceeeeeeCC--------CceeecCCCeEEEEcCCCCccceeeeecccccCCCCCcccccCCCCCceeccc-
Q 027329 27 FEIRNNCPFTVWAAAVPG--------GGRQLIRGQTWTINVNPGTKQARIWARTKCTFNAEGRGRCETGDCNGLLQCQA- 97 (225)
Q Consensus 27 ~tv~N~C~~tVwp~~~p~--------~g~~L~~G~s~s~~~p~~w~sGriw~RtgCs~~~~g~~~C~TGdCgg~~~C~~- 97 (225)
|||+|||+|||||++++. +||+|+||+++++++|++| +||||+||+|+++..|++.|+||||++ +.|.+
T Consensus 1 ~ti~NnC~~tVWp~i~~~~~~~~~~~gg~~L~pG~s~si~vP~~w-sGRIW~RtgC~~~~~g~g~C~TGdcgg-~~c~g~ 78 (153)
T cd08961 1 LTITNNCGYQVWIYNLGTELSSAPDASGPGLAPGRSTTIQIPKGF-SGRIWFRTGCSMDFSGTTGCLTQDPGV-VNPTDP 78 (153)
T ss_pred CEEEeCCCCcCcceECCCCCCCCccCcccccCCCCcEEEEecCCc-eEEEEEecCCcccCCCCccccccCCCC-cccCCC
Confidence 689999999999999752 7999999999999999999 799999999999998999999999998 56765
Q ss_pred CCCCCcceeeeeeccCCCcceeeecccCCcCCceeeeecCCCccccccccccccCCCCCCCCCCCCccCCccccCCCccc
Q 027329 98 YGAPPNTLAEYTLNQFNNLDFYDISLVDGFNVPMDFSPLSGIRCRGIRCAADITGQCPNELRAPGGCNNPCTVFKTDQYC 177 (225)
Q Consensus 98 ~g~~paTlaEftl~~~~~~d~YDVSlVdG~NlP~~i~p~~~~~C~~~~C~~dl~~~CP~~l~~~~gC~SaC~~~~~~~~C 177 (225)
.+.||+|||||||++.+++|||||||||||||||+|+|..+.. .
T Consensus 79 ~g~pp~TlaEfTl~~~~~~dfydISlVDGfNlP~~i~p~~~~g----~-------------------------------- 122 (153)
T cd08961 79 NRDPPFTLAEFTLNDFNSGDFIDSSLVDGFNAPMTVGPRRGDG----T-------------------------------- 122 (153)
T ss_pred CCCCCcceEEEEecCCCCcceEEEEeecccCCCEEEEeccCCC----C--------------------------------
Confidence 6689999999999976788999999999999999999975321 1
Q ss_pred cCCCCCCCchhHHHHHhhCCcccCCCCCCCCCceeeCCCCceEEEe
Q 027329 178 CNSGKCVPTNFSKFFKQRCPNAYSYPKDDQTSTFTCPGGTNYKVTF 223 (225)
Q Consensus 178 C~g~~C~pt~ys~~fK~~CP~AYsya~Dd~tstftC~~~~~y~ItF 223 (225)
|++. . |||+|||||+.++|+|+++.+|.|||
T Consensus 123 -----C~~~--------~--~~~~~~~~~~~~~~~c~~~~~~~~~~ 153 (153)
T cd08961 123 -----CLST--------G--DAYSYAFDDHESTFTCGGGRNYSLTF 153 (153)
T ss_pred -----cccc--------c--cccccCCCCccceEEcCCCCceEEeC
Confidence 1111 1 99999999988999999999999998
No 8
>PF04681 Bys1: Blastomyces yeast-phase-specific protein; InterPro: IPR006771 The pathogenic dimorphic fungal organism Blastomyces dermatitidis exists as a budding yeast at 37 degrees C and as a mycelium at 25 degrees C. Bys1 is expressed specifically in the high temperature, unicellular yeast morphology and codes for a protein of 18.6 kDa that contains multiple putative phosphorylation sites, a hydrophobic N terminus, and two 34-amino-acid domains with similarly spaced nine-amino-acid degenerative repeating motifs []. The molecular function of this protein is not known.
Probab=98.33 E-value=1e-05 Score=67.17 Aligned_cols=47 Identities=32% Similarity=0.412 Sum_probs=35.4
Q ss_pred CCCcceeeeeeccCCCcceeeecccCCcCC---ceeeeecCCCcccccccc
Q 027329 100 APPNTLAEYTLNQFNNLDFYDISLVDGFNV---PMDFSPLSGIRCRGIRCA 147 (225)
Q Consensus 100 ~~paTlaEftl~~~~~~d~YDVSlVdG~Nl---P~~i~p~~~~~C~~~~C~ 147 (225)
..|.|..|++|...+.+.|||+|.|.|+.. +|.|.|.+.+ |+++.|.
T Consensus 71 ~~pqt~FaYtL~~d~~~VwYDLSdvfGdPF~G~~v~v~ps~~~-Cp~I~Wp 120 (155)
T PF04681_consen 71 GSPQTIFAYTLVDDNNQVWYDLSDVFGDPFAGHKVTVNPSDPS-CPSIVWP 120 (155)
T ss_pred CCceeEEEEEecCCCceEEEECccccCCCcCCCEEEEecCCCC-CCceECC
Confidence 357899999998656789999999999855 3777776543 6655443
No 9
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=91.83 E-value=0.24 Score=46.37 Aligned_cols=76 Identities=25% Similarity=0.279 Sum_probs=45.7
Q ss_pred CCCeEEEEcCCCCccceeeeecccccCCCCCcccccCCCCCceeccc-CC--CCC----cceeeeeeccCCCcceeeecc
Q 027329 51 RGQTWTINVNPGTKQARIWARTKCTFNAEGRGRCETGDCNGLLQCQA-YG--APP----NTLAEYTLNQFNNLDFYDISL 123 (225)
Q Consensus 51 ~G~s~s~~~p~~w~sGriw~RtgCs~~~~g~~~C~TGdCgg~~~C~~-~g--~~p----aTlaEftl~~~~~~d~YDVSl 123 (225)
+|++.++++|. + +||||=..+=. =.|.-.. +..+.-.. .- -|. -.-+|||++. .+-|-++|.
T Consensus 61 ~G~~~tvtiP~-~-sgRiyfS~g~~----L~F~~~~---~~~lv~Ps~~NpsDpN~~~~~~f~EfT~n~--~gl~~N~T~ 129 (353)
T cd09216 61 PGDTTTVLPPR-M-SGRIYFSLGSK----LRFKVVT---NPALVQPAGWNPSDPNFNILHDWVEFTFND--AGLFCNTTQ 129 (353)
T ss_pred CCCceEEcccc-c-CcEEEEEcCCe----eEEEecC---CCcccCCCCCCCCCCCccceEEEEEEEecC--CceEecccc
Confidence 57888899997 6 89999543210 0121111 11111110 00 111 1347999983 457899999
Q ss_pred cCCcCCceeeeecC
Q 027329 124 VDGFNVPMDFSPLS 137 (225)
Q Consensus 124 VdG~NlP~~i~p~~ 137 (225)
||-|.+||.|+-.+
T Consensus 130 VD~~~~P~~l~l~~ 143 (353)
T cd09216 130 VDMFSAPLAIGLRG 143 (353)
T ss_pred eeeeccceEEEEec
Confidence 99999999987553
No 10
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=90.17 E-value=0.57 Score=44.18 Aligned_cols=77 Identities=22% Similarity=0.204 Sum_probs=46.4
Q ss_pred CCCeEEEEcCCCCccceeeeecccccCCCCCcccccCCCCCceeccc-C--CCCC----cceeeeeeccCCCcceeeecc
Q 027329 51 RGQTWTINVNPGTKQARIWARTKCTFNAEGRGRCETGDCNGLLQCQA-Y--GAPP----NTLAEYTLNQFNNLDFYDISL 123 (225)
Q Consensus 51 ~G~s~s~~~p~~w~sGriw~RtgCs~~~~g~~~C~TGdCgg~~~C~~-~--g~~p----aTlaEftl~~~~~~d~YDVSl 123 (225)
+|++.++++|.-+ +||||=..+=. -.|. ...+ +-.+.-.. . .-|. -.-+|||++. .+-|-++|.
T Consensus 62 ~G~~~titiP~i~-sgRIyfS~g~~----L~F~-~~~~-g~glv~Ps~~NpsDpN~~~~~~f~EfT~n~--~~l~~N~S~ 132 (369)
T cd09220 62 PGSTTTVTIPILA-GGRIWFSVDDK----LTFL-LNPG-GPALVEPSVTNPSDPNYNKNWGFCEFTYNS--GQLYANISY 132 (369)
T ss_pred CCCceeEEccccc-ceEEEEEcCCe----EEEE-ecCC-CccccCCCcCCCCCCCccceEEEEEEEecC--CceEecccc
Confidence 5888999999866 89999543211 0111 1111 10111010 0 0111 1347999984 567899999
Q ss_pred cCCcCCceeeeec
Q 027329 124 VDGFNVPMDFSPL 136 (225)
Q Consensus 124 VdG~NlP~~i~p~ 136 (225)
||-|.+||.|+-.
T Consensus 133 VD~~~~P~~l~l~ 145 (369)
T cd09220 133 VDFVGLPLGLSLT 145 (369)
T ss_pred eeeeccCeEEEEE
Confidence 9999999988755
No 11
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=72.80 E-value=3.6 Score=38.08 Aligned_cols=31 Identities=23% Similarity=0.439 Sum_probs=26.7
Q ss_pred eeeeeeccCCCcceeeecccCCcCCceeeeecC
Q 027329 105 LAEYTLNQFNNLDFYDISLVDGFNVPMDFSPLS 137 (225)
Q Consensus 105 laEftl~~~~~~d~YDVSlVdG~NlP~~i~p~~ 137 (225)
.+|||++ +.+-|-++|.||-|.+||.|+-.+
T Consensus 125 f~EFT~n--~~~l~~N~T~VD~~~lPl~l~l~~ 155 (319)
T cd09214 125 FIEFTYN--ATGLWGNTTRVDAFGIPLTLRLIG 155 (319)
T ss_pred EEEEEec--CCceEecccceeeeccCeEEEEEc
Confidence 4799998 367899999999999999998664
No 12
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=69.31 E-value=3.5 Score=31.60 Aligned_cols=26 Identities=19% Similarity=0.338 Sum_probs=12.5
Q ss_pred CCchhhHHHHHHHH-HHHHhc-cccceEE
Q 027329 1 MSFFTYFLIFFLFI-SLSSLT-STHGATF 27 (225)
Q Consensus 1 m~~~~~~~~~~~~~-~~~~~~-~a~a~t~ 27 (225)
|++ |.++|+.|+| ++||++ .+.++..
T Consensus 1 MaS-K~~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 1 MAS-KAFLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred Cch-hHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 775 5555554444 444443 3444444
No 13
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=69.01 E-value=3.5 Score=38.20 Aligned_cols=37 Identities=27% Similarity=0.505 Sum_probs=25.9
Q ss_pred chhHHHHHhhCC--cccCCCCCCCC---CceeeCCCCceEEE
Q 027329 186 TNFSKFFKQRCP--NAYSYPKDDQT---STFTCPGGTNYKVT 222 (225)
Q Consensus 186 t~ys~~fK~~CP--~AYsya~Dd~t---stftC~~~~~y~It 222 (225)
+.|++++++.-. .||.|||||-. ++..=......+||
T Consensus 276 N~Yar~vH~~~idg~aYaF~YDDV~~~s~~v~~~~P~~~~it 317 (319)
T cd09214 276 NYYAQFWHAHSINGLAYGFPYDDVNGQSSTLSTTDPTHATIT 317 (319)
T ss_pred hHHHHHHHHhccCCCeeecccccccccccccccCCCceEEEE
Confidence 569999999998 69999999953 33333333455554
No 14
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=62.24 E-value=8.8 Score=36.34 Aligned_cols=24 Identities=25% Similarity=0.695 Sum_probs=20.8
Q ss_pred CchhHHHHHhhCC--cccCCCCCCCC
Q 027329 185 PTNFSKFFKQRCP--NAYSYPKDDQT 208 (225)
Q Consensus 185 pt~ys~~fK~~CP--~AYsya~Dd~t 208 (225)
.+.|++++++.-+ .+|.|||||-.
T Consensus 320 tNhYar~vH~~~~dg~gYaFpYDDV~ 345 (369)
T cd09220 320 TNHYSRIVHENNPDGRGYAFPYDDVN 345 (369)
T ss_pred chHHHHHHHHhccCCCeecccccccC
Confidence 4679999999998 68999999963
No 15
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=57.73 E-value=11 Score=35.54 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=19.5
Q ss_pred chhHHHHHhhCC--cccCCCCCCC
Q 027329 186 TNFSKFFKQRCP--NAYSYPKDDQ 207 (225)
Q Consensus 186 t~ys~~fK~~CP--~AYsya~Dd~ 207 (225)
+.|++++++.=. .||.|||||-
T Consensus 310 NhYar~vH~~~~dgk~YaF~YDDV 333 (353)
T cd09216 310 NHYAKVVHEAMADGKAYGFAFDDV 333 (353)
T ss_pred hHHHHHHHHhccCCCeeecCcccc
Confidence 579999999987 5899999995
No 16
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=53.43 E-value=31 Score=26.90 Aligned_cols=51 Identities=14% Similarity=0.291 Sum_probs=37.0
Q ss_pred ccccceEEEEEcCCCCceeeeee------------------------C-CCceeecCCCeEEEEcCC-CCccceeeee
Q 027329 20 TSTHGATFEIRNNCPFTVWAAAV------------------------P-GGGRQLIRGQTWTINVNP-GTKQARIWAR 71 (225)
Q Consensus 20 ~~a~a~t~tv~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriw~R 71 (225)
+.....++.|+|.-.-+|++|.. | ++....+||+++++++-+ +- ..+|+|-
T Consensus 17 ~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG-~r~v~G~ 93 (101)
T TIGR00192 17 EGRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELVAIGG-NRRIYGF 93 (101)
T ss_pred CCCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEEEccC-ceEEEcc
Confidence 45567899999999999999951 2 345667899999997543 32 3566654
No 17
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=52.51 E-value=28 Score=27.11 Aligned_cols=51 Identities=16% Similarity=0.360 Sum_probs=36.6
Q ss_pred ccccceEEEEEcCCCCceeeeee------------------------C-CCceeecCCCeEEEEcCC-CCccceeeee
Q 027329 20 TSTHGATFEIRNNCPFTVWAAAV------------------------P-GGGRQLIRGQTWTINVNP-GTKQARIWAR 71 (225)
Q Consensus 20 ~~a~a~t~tv~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriw~R 71 (225)
+.....+++|+|.-.-+|+.|.. | ++....+||+++++++-+ +- ..+|+|-
T Consensus 17 ~gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~~G-~r~v~G~ 93 (101)
T cd00407 17 AGREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELVPIGG-KRRVYGF 93 (101)
T ss_pred CCCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEEEccC-ceEEEcc
Confidence 44567899999999999999951 2 345677899999997543 32 3556543
No 18
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=49.96 E-value=17 Score=23.18 Aligned_cols=31 Identities=13% Similarity=0.328 Sum_probs=15.2
Q ss_pred hhhHHHH--HHHHHHHHhccccceEEEEEcCCC
Q 027329 4 FTYFLIF--FLFISLSSLTSTHGATFEIRNNCP 34 (225)
Q Consensus 4 ~~~~~~~--~~~~~~~~~~~a~a~t~tv~N~C~ 34 (225)
||.+.+. +++++++.+..+.+-++.|.-+|-
T Consensus 1 Mk~l~~a~~l~lLal~~a~~~~pG~ViING~C~ 33 (36)
T PF08194_consen 1 MKCLSLAFALLLLALAAAVPATPGNVIINGKCI 33 (36)
T ss_pred CceeHHHHHHHHHHHHhcccCCCCeEEECceee
Confidence 4555543 233343323334466777766663
No 19
>PRK13202 ureB urease subunit beta; Reviewed
Probab=46.18 E-value=49 Score=25.93 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=35.0
Q ss_pred cceEEEEEcCCCCceeeeee------------------------C-CCceeecCCCeEEEEcCC-CCccceeeee
Q 027329 23 HGATFEIRNNCPFTVWAAAV------------------------P-GGGRQLIRGQTWTINVNP-GTKQARIWAR 71 (225)
Q Consensus 23 ~a~t~tv~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriw~R 71 (225)
...+++|+|.-.-+|++|.. | ++....+||+++++++-+ +- ..+|+|-
T Consensus 21 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG-~r~v~G~ 94 (104)
T PRK13202 21 SRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVPLGG-RREVPGL 94 (104)
T ss_pred ceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEEccC-CeEEEcC
Confidence 56799999999999999951 2 345667899999997543 32 3566654
No 20
>PRK13203 ureB urease subunit beta; Reviewed
Probab=45.62 E-value=42 Score=26.21 Aligned_cols=51 Identities=18% Similarity=0.304 Sum_probs=36.5
Q ss_pred ccccceEEEEEcCCCCceeeeee------------------------C-CCceeecCCCeEEEEcCC-CCccceeeee
Q 027329 20 TSTHGATFEIRNNCPFTVWAAAV------------------------P-GGGRQLIRGQTWTINVNP-GTKQARIWAR 71 (225)
Q Consensus 20 ~~a~a~t~tv~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriw~R 71 (225)
+.-...+++|+|.-.-+|++|.. | ++....+||+++++++-+ +- ..+|+|-
T Consensus 17 ~gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG-~r~v~G~ 93 (102)
T PRK13203 17 AGRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELVPLAG-ARRVYGF 93 (102)
T ss_pred CCCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEEEccC-ceEEEcc
Confidence 44567899999999999999951 2 345667899999997543 32 3566543
No 21
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=43.97 E-value=26 Score=24.64 Aligned_cols=23 Identities=26% Similarity=0.668 Sum_probs=17.5
Q ss_pred eeecCCCeEEEEcCCCC----ccceee
Q 027329 47 RQLIRGQTWTINVNPGT----KQARIW 69 (225)
Q Consensus 47 ~~L~~G~s~s~~~p~~w----~sGriw 69 (225)
|.|.||+..++.+..+. .+|++|
T Consensus 2 ~~L~~g~~~~lr~~~~~~l~v~~G~vW 28 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQRLRVESGRVW 28 (63)
T ss_pred EEeCCCceEEeEcCCCcEEEEccccEE
Confidence 67888888888877764 267888
No 22
>PF00947 Pico_P2A: Picornavirus core protein 2A; InterPro: IPR000081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This domain defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies 3CA and 3CB. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral 3C cysteine protease []. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0016032 viral reproduction; PDB: 2HRV_B 1Z8R_A.
Probab=41.19 E-value=22 Score=28.77 Aligned_cols=38 Identities=34% Similarity=0.666 Sum_probs=22.1
Q ss_pred CCcccccCCCCCceecccCCCCCcceeeeeeccCCCcceeeec
Q 027329 80 GRGRCETGDCNGLLQCQAYGAPPNTLAEYTLNQFNNLDFYDIS 122 (225)
Q Consensus 80 g~~~C~TGdCgg~~~C~~~g~~paTlaEftl~~~~~~d~YDVS 122 (225)
|.+.|+-|||||.|.|.-. -+.=.|.++.+-..|-||+
T Consensus 83 g~Gp~~PGdCGg~L~C~HG-----ViGi~Tagg~g~VaF~dir 120 (127)
T PF00947_consen 83 GEGPAEPGDCGGILRCKHG-----VIGIVTAGGEGHVAFADIR 120 (127)
T ss_dssp EE-SSSTT-TCSEEEETTC-----EEEEEEEEETTEEEEEECC
T ss_pred ecccCCCCCCCceeEeCCC-----eEEEEEeCCCceEEEEech
Confidence 4578999999999999632 2233444443333555554
No 23
>PRK13201 ureB urease subunit beta; Reviewed
Probab=40.14 E-value=62 Score=26.51 Aligned_cols=51 Identities=12% Similarity=0.220 Sum_probs=37.2
Q ss_pred ccccceEEEEEcCCCCceeeeee------------------------C-CCceeecCCCeEEEEcCC-CCccceeeee
Q 027329 20 TSTHGATFEIRNNCPFTVWAAAV------------------------P-GGGRQLIRGQTWTINVNP-GTKQARIWAR 71 (225)
Q Consensus 20 ~~a~a~t~tv~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriw~R 71 (225)
+.....++.|+|.-.-+|++|.. | ++....+||+++++.+-+ +- ..+|+|-
T Consensus 17 ~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~igG-~r~V~Gf 93 (136)
T PRK13201 17 NHHPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLVEYAG-KRKIFGF 93 (136)
T ss_pred CCCCEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEEEEccC-ceEEEcc
Confidence 45567899999999999999951 2 345667899999997543 32 4566654
No 24
>PRK13204 ureB urease subunit beta; Reviewed
Probab=39.07 E-value=63 Score=27.11 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=37.9
Q ss_pred ccccceEEEEEcCCCCceeeeee------------------------C-CCceeecCCCeEEEEcCC-CCccceeeeec
Q 027329 20 TSTHGATFEIRNNCPFTVWAAAV------------------------P-GGGRQLIRGQTWTINVNP-GTKQARIWART 72 (225)
Q Consensus 20 ~~a~a~t~tv~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriw~Rt 72 (225)
+.-...+|+|+|.-.-+|++|.. | ++....+||+++++.+-+ +- ..+|+|-.
T Consensus 40 ~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~~gG-~r~V~Gfn 117 (159)
T PRK13204 40 QGRPRTTLTVRNTGDRPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLVPFAG-KRFIFGFN 117 (159)
T ss_pred CCCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEEEEccC-ceEEEccC
Confidence 45567899999999999999951 2 345677899999997543 33 46777543
No 25
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=36.20 E-value=67 Score=25.00 Aligned_cols=50 Identities=20% Similarity=0.375 Sum_probs=30.4
Q ss_pred ccccceEEEEEcCCCCceeeeee------------------------C-CCceeecCCCeEEEEcCC-CCccceeee
Q 027329 20 TSTHGATFEIRNNCPFTVWAAAV------------------------P-GGGRQLIRGQTWTINVNP-GTKQARIWA 70 (225)
Q Consensus 20 ~~a~a~t~tv~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriw~ 70 (225)
+.-...+++|+|.-.-+|++|.. | ++....+||+++++++-+ +- ..+|+|
T Consensus 16 ~gr~~~~l~V~N~GDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRFEPG~~k~V~LV~~gG-~r~v~G 91 (100)
T PF00699_consen 16 AGRERITLEVTNTGDRPIQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRFEPGDTKEVELVPIGG-NRRVYG 91 (100)
T ss_dssp TTSEEEEEEEEE-SSS-EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEEE-ST-T-EE-S
T ss_pred CCCcEEEEEEEeCCCcceEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEECCCCcEEEEEEEccC-CeEEEc
Confidence 34557899999999999999941 2 345677899999997533 32 355654
No 26
>PRK13198 ureB urease subunit beta; Reviewed
Probab=35.36 E-value=79 Score=26.52 Aligned_cols=51 Identities=10% Similarity=0.162 Sum_probs=37.3
Q ss_pred ccccceEEEEEcCCCCceeeeee------------------------C-CCceeecCCCeEEEEcCC-CCccceeeee
Q 027329 20 TSTHGATFEIRNNCPFTVWAAAV------------------------P-GGGRQLIRGQTWTINVNP-GTKQARIWAR 71 (225)
Q Consensus 20 ~~a~a~t~tv~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriw~R 71 (225)
..-...+|.|+|.-.-+|++|.. | ++....+||+++++.+-+ +- ..+|+|-
T Consensus 45 ~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~~gG-~r~V~Gf 121 (158)
T PRK13198 45 ENKPVTKVKVRNTGDRPIQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLIPFGG-KQTLYGF 121 (158)
T ss_pred CCCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEEEccC-ceEEEcc
Confidence 44567899999999999999951 2 345677899999997543 32 4667654
No 27
>PRK02710 plastocyanin; Provisional
Probab=34.87 E-value=1.7e+02 Score=22.65 Aligned_cols=14 Identities=14% Similarity=-0.043 Sum_probs=9.4
Q ss_pred ceeecCCCeEEEEc
Q 027329 46 GRQLIRGQTWTINV 59 (225)
Q Consensus 46 g~~L~~G~s~s~~~ 59 (225)
-..+++|+..++..
T Consensus 48 ~i~v~~Gd~V~~~N 61 (119)
T PRK02710 48 TLTIKAGDTVKWVN 61 (119)
T ss_pred EEEEcCCCEEEEEE
Confidence 46778888766643
No 28
>PRK13205 ureB urease subunit beta; Reviewed
Probab=34.05 E-value=74 Score=26.70 Aligned_cols=51 Identities=24% Similarity=0.243 Sum_probs=36.8
Q ss_pred ccccceEEEEEcCCCCceeeeee------------------------C-CCceeecCCCeEEEEcCC-CCccceeeee
Q 027329 20 TSTHGATFEIRNNCPFTVWAAAV------------------------P-GGGRQLIRGQTWTINVNP-GTKQARIWAR 71 (225)
Q Consensus 20 ~~a~a~t~tv~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriw~R 71 (225)
+.....+|+|+|.-.-+|.+|.. | ++....+||+++++.+-+ += ..+|+|-
T Consensus 17 ~GR~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~LV~igG-~R~V~Gf 93 (162)
T PRK13205 17 VGREAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNLVAIGG-DRIVAGF 93 (162)
T ss_pred CCCcEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEEEEccC-ceEEEcc
Confidence 45567899999999999999951 2 345667899999997543 32 3566654
No 29
>PLN00115 pollen allergen group 3; Provisional
Probab=33.26 E-value=50 Score=26.33 Aligned_cols=41 Identities=15% Similarity=0.209 Sum_probs=20.5
Q ss_pred CCchhhHHHHHHHHHHHHhcc--ccceEEEEEcCCCCceeeeeeC
Q 027329 1 MSFFTYFLIFFLFISLSSLTS--THGATFEIRNNCPFTVWAAAVP 43 (225)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~--a~a~t~tv~N~C~~tVwp~~~p 43 (225)
|++++.++.+ ..+|.||+.+ ....+|+|.-.- .+-|..++.
T Consensus 1 ~~~~~~~~~~-~~~a~l~~~~~~g~~v~F~V~~gS-np~yL~ll~ 43 (118)
T PLN00115 1 MSSLSFLLLA-VALAALFAVGSCATEVTFKVGKGS-SSTSLELVT 43 (118)
T ss_pred CchhHHHHHH-HHHHHHhhhhhcCCceEEEECCCC-CcceEEEEE
Confidence 6666664333 3333444332 335777877555 234455543
No 30
>PHA03094 dUTPase; Provisional
Probab=33.15 E-value=42 Score=27.28 Aligned_cols=30 Identities=10% Similarity=0.056 Sum_probs=23.5
Q ss_pred ceeecCCCeEE------EEcCCCCccceeeeeccccc
Q 027329 46 GRQLIRGQTWT------INVNPGTKQARIWARTKCTF 76 (225)
Q Consensus 46 g~~L~~G~s~s------~~~p~~w~sGriw~RtgCs~ 76 (225)
.+.|.||+... +.+|.+| .|.|++|.+-..
T Consensus 35 ~~~i~P~~~~lv~Tg~~i~ip~g~-~g~i~~RSsla~ 70 (144)
T PHA03094 35 DYTVPPKERILVKTDISLSIPKFC-YGRIAPRSGLSL 70 (144)
T ss_pred CeEECCCCEEEEEcCeEEEcCCCE-EEEEEccccccc
Confidence 45778888776 6799999 699999976543
No 31
>PF12454 Ecm33: GPI-anchored cell wall organization protein
Probab=32.51 E-value=68 Score=20.91 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=16.0
Q ss_pred CCchhhHHHHHHHHHHHHhcc-ccceEEEEEcCC
Q 027329 1 MSFFTYFLIFFLFISLSSLTS-THGATFEIRNNC 33 (225)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~-a~a~t~tv~N~C 33 (225)
|+++|.++-.|..+-.+++.. =...++||.|+=
T Consensus 1 Ma~~Ky~lpAlaaag~a~A~s~C~~~t~tI~nQ~ 34 (40)
T PF12454_consen 1 MAFSKYLLPALAAAGAAAAASSCSGGTTTIENQA 34 (40)
T ss_pred CchHHHHHHHHHHHHHHHHhccCCCCceeeeccc
Confidence 667775554422221122221 124688888863
No 32
>PRK13986 urease subunit alpha; Provisional
Probab=31.27 E-value=96 Score=27.49 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=38.1
Q ss_pred ccccceEEEEEcCCCCceeeeee------------------------C-CCceeecCCCeEEEEcCC-CCccceeeeec
Q 027329 20 TSTHGATFEIRNNCPFTVWAAAV------------------------P-GGGRQLIRGQTWTINVNP-GTKQARIWART 72 (225)
Q Consensus 20 ~~a~a~t~tv~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriw~Rt 72 (225)
++-...+++|+|.-.-+|++|.. | ++....+||+++++++-+ +- ..+|+|-.
T Consensus 122 ~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV~~gG-~r~v~G~n 199 (225)
T PRK13986 122 AGKKAVSVKVKNVGDRPVQVGSHFHFFEVNRCLEFDREKAFGKRLDIASGTAVRFEPGEEKSVELIDIGG-NRRIFGFN 199 (225)
T ss_pred CCCcEEEEEEEeCCCCceeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEEEccC-ceEEecCC
Confidence 45567899999999999999951 2 345677899999997543 33 46777643
No 33
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=31.11 E-value=16 Score=30.34 Aligned_cols=10 Identities=40% Similarity=0.830 Sum_probs=7.8
Q ss_pred ccCCcCCcee
Q 027329 123 LVDGFNVPMD 132 (225)
Q Consensus 123 lVdG~NlP~~ 132 (225)
|||||||=-.
T Consensus 2 lIDGYNli~~ 11 (166)
T PF05991_consen 2 LIDGYNLIHA 11 (166)
T ss_pred eEcchhhhCC
Confidence 6899998644
No 34
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=30.63 E-value=1.2e+02 Score=24.79 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=18.0
Q ss_pred eeecCCCeEEEEcCCCCccceee
Q 027329 47 RQLIRGQTWTINVNPGTKQARIW 69 (225)
Q Consensus 47 ~~L~~G~s~s~~~p~~w~sGriw 69 (225)
..|.||++.++.++..- .|++|
T Consensus 94 ~~I~pGet~TitF~adK-pG~Y~ 115 (135)
T TIGR03096 94 EVIKAGETKTISFKADK-AGAFT 115 (135)
T ss_pred eEECCCCeEEEEEECCC-CEEEE
Confidence 45899999999887776 68887
No 35
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=30.00 E-value=1e+02 Score=26.99 Aligned_cols=51 Identities=16% Similarity=0.261 Sum_probs=36.8
Q ss_pred ccccceEEEEEcCCCCceeeeee------------------------C-CCceeecCCCeEEEEcCC-CCccceeeee
Q 027329 20 TSTHGATFEIRNNCPFTVWAAAV------------------------P-GGGRQLIRGQTWTINVNP-GTKQARIWAR 71 (225)
Q Consensus 20 ~~a~a~t~tv~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriw~R 71 (225)
..-...+++|+|.-.-+|++|.. | ++....+||+++++++-+ +- ..+|+|-
T Consensus 126 ~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV~~gG-~r~v~G~ 202 (208)
T PRK13192 126 AGRPAVTLDVTNTGDRPIQVGSHFHFFEVNRALRFDRAAAYGMRLDIPAGTAVRFEPGETKEVRLVPIGG-ARVVIGF 202 (208)
T ss_pred CCCCEEEEEEEeCCCCceeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEEEccC-ceEEEcc
Confidence 44567899999999999999951 2 345677899999997543 32 3566653
No 36
>PRK01904 hypothetical protein; Provisional
Probab=29.30 E-value=33 Score=29.85 Aligned_cols=29 Identities=10% Similarity=0.065 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHHHHHhccccceEEEEEcC
Q 027329 4 FTYFLIFFLFISLSSLTSTHGATFEIRNN 32 (225)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~a~a~t~tv~N~ 32 (225)
||+..++++++++++.+.+.|.+|++-.+
T Consensus 1 MK~~~~~~~~~~l~~s~~a~A~tL~lp~~ 29 (219)
T PRK01904 1 MKLRKAALAVATLLTSTASFAGMVTTSSN 29 (219)
T ss_pred CchhHHHHHHHHHHHhHHhhHheeeCCCc
Confidence 34433333333333444556667777665
No 37
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=27.28 E-value=19 Score=29.56 Aligned_cols=34 Identities=29% Similarity=0.573 Sum_probs=12.5
Q ss_pred ccccceEEEEEcCCCCce--eeeeeCCCceeecCCCeEEEE
Q 027329 20 TSTHGATFEIRNNCPFTV--WAAAVPGGGRQLIRGQTWTIN 58 (225)
Q Consensus 20 ~~a~a~t~tv~N~C~~tV--wp~~~p~~g~~L~~G~s~s~~ 58 (225)
..+-...+.|...=+|+| ||- | -+|..||+..|.
T Consensus 18 l~sC~deLDIQQ~YpF~v~tmPV--p---k~I~~GeTvEIR 53 (137)
T PF12988_consen 18 LSSCDDELDIQQAYPFTVETMPV--P---KKIKKGETVEIR 53 (137)
T ss_dssp -----TTS------SEEEEE---------SS--TTEEEEEE
T ss_pred HhhcCCccceeecCCcEEEEecc--c---cccCCCCEEEEE
Confidence 344567799999999987 655 2 356777777764
No 38
>PF13978 DUF4223: Protein of unknown function (DUF4223)
Probab=27.19 E-value=82 Score=21.79 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=16.7
Q ss_pred HhccccceEEEEEcCCCCce--eeee
Q 027329 18 SLTSTHGATFEIRNNCPFTV--WAAA 41 (225)
Q Consensus 18 ~~~~a~a~t~tv~N~C~~tV--wp~~ 41 (225)
.+++-.++..+=.|+|+|+- .|++
T Consensus 16 ~Lt~CTG~v~Nk~knCsYDYllHPAi 41 (56)
T PF13978_consen 16 TLTACTGHVENKEKNCSYDYLLHPAI 41 (56)
T ss_pred HHhhccceeeccCCCCcceeeecchh
Confidence 34555677888889999875 4443
No 39
>cd05468 pVHL von Hippel-Landau (pVHL) tumor suppressor protein. von Hippel-Landau (pVHL) protein, the gene product of VHL, is a critical regulator of the ubiquitous oxygen-sensing pathway. It is conserved throughout evolution, as its homologs are found in organisms ranging from mammals to the Drosophila melanogaster, Anopheles gambiae insects and the Caenorhabditis elegans nematode. pVHL acts as the substrate recognition component of an E3 ubiquitin ligase complex. Several proteins have been identified as pVHL-binding proteins that are subject to ubiquitin-mediated proteolysis; the best characterized putative substrates are the alpha subunits of the hypoxia-inducible factor (HIF1alpha, HIF2alpha, and HIF3alpha). In addition to HIF degradation, pVHL has been implicated to be involved in HIF independent cellular processes. Germline VHL mutations cause renal cell carcinomas, hemangioblastomas and pheochromocytomas in humans. pVHL can bind to and direct the proper deposition of fibronecti
Probab=26.09 E-value=1.4e+02 Score=24.14 Aligned_cols=45 Identities=20% Similarity=0.088 Sum_probs=31.3
Q ss_pred cceEEEEEcCCCCceeeeeeCCCc-----eeecCCCeEEEEcCCCCccceeeee
Q 027329 23 HGATFEIRNNCPFTVWAAAVPGGG-----RQLIRGQTWTINVNPGTKQARIWAR 71 (225)
Q Consensus 23 ~a~t~tv~N~C~~tVwp~~~p~~g-----~~L~~G~s~s~~~p~~w~sGriw~R 71 (225)
....++|+|+.+.+|-+-++--.| ..|+||+.+.+.- + .|..|--
T Consensus 7 ~~~~v~F~N~t~~~v~~~Wid~~G~~~~Y~~l~pg~~~~~~T---y-~~H~W~~ 56 (141)
T cd05468 7 VPSTVRFVNRTDRPVELYWIDYDGKPVSYGTLQPGETVRQNT---Y-VGHPWLF 56 (141)
T ss_pred ceEEEEEEeCCCCeEEEEEECCCCCEEEeeeeCCCCEEeecc---c-CCCcEEE
Confidence 357899999999999887763222 3699999876532 2 4666643
No 40
>PF06282 DUF1036: Protein of unknown function (DUF1036); InterPro: IPR009380 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.65 E-value=1.2e+02 Score=23.62 Aligned_cols=33 Identities=21% Similarity=0.141 Sum_probs=26.6
Q ss_pred eEEEEEcCCCCceeeeee--------CCCceeecCCCeEEE
Q 027329 25 ATFEIRNNCPFTVWAAAV--------PGGGRQLIRGQTWTI 57 (225)
Q Consensus 25 ~t~tv~N~C~~tVwp~~~--------p~~g~~L~~G~s~s~ 57 (225)
+-|+|-|+-++.|+.++- ..|-+.|+||+-.++
T Consensus 4 a~~~vCN~T~~~v~vAigy~~~~~W~seGWw~i~pg~C~~v 44 (115)
T PF06282_consen 4 AGLRVCNRTSSPVGVAIGYRDGGGWVSEGWWRIDPGECATV 44 (115)
T ss_pred CCcEEecCCCCeEEEEEEEEcCCCcEEeeeEEeCCCceEEe
Confidence 468999999999999973 135678999987666
No 41
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=23.37 E-value=94 Score=24.09 Aligned_cols=47 Identities=17% Similarity=0.421 Sum_probs=31.2
Q ss_pred cceEEEEEcCCCCce---eeeee-CC----Cc------eeecCCCeEEEEcCCCCccceee
Q 027329 23 HGATFEIRNNCPFTV---WAAAV-PG----GG------RQLIRGQTWTINVNPGTKQARIW 69 (225)
Q Consensus 23 ~a~t~tv~N~C~~tV---wp~~~-p~----~g------~~L~~G~s~s~~~p~~w~sGriw 69 (225)
+...|+|+|+=++++ |-|+. +. +| ..+.||+++++..+..-..|.+|
T Consensus 34 d~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~w 94 (117)
T PF07732_consen 34 DTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYW 94 (117)
T ss_dssp EEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEE
T ss_pred CeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecceeeeEeeecccccee
Confidence 457899999998765 55543 21 12 46899998877654443348888
No 42
>cd07557 trimeric_dUTPase Trimeric dUTP diphosphatases. Trimeric dUTP diphosphatases, or dUTPases, are the most common family of dUTPase, found in bacteria, eukaryotes, and archaea. They catalyze the hydrolysis of the dUTP-Mg complex (dUTP-Mg) into dUMP and pyrophosphate. This reaction is crucial for the preservation of chromosomal integrity as it removes dUTP and therefore reduces the cellular dUTP/dTTP ratio, and prevents dUTP from being incorporated into DNA. It also provides dUMP as the precursor for dTTP synthesis via the thymidylate synthase pathway. dUTPases are homotrimeric, except some monomeric viral dUTPases, which have been shown to mimic a trimer. Active sites are located at the subunit interface.
Probab=21.81 E-value=1.1e+02 Score=22.16 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=20.2
Q ss_pred ceeecCCCeE------EEEcCCCCccceeeeecccc
Q 027329 46 GRQLIRGQTW------TINVNPGTKQARIWARTKCT 75 (225)
Q Consensus 46 g~~L~~G~s~------s~~~p~~w~sGriw~RtgCs 75 (225)
.+.|.|++.. .+.+|.++ .|.|++|.+-.
T Consensus 13 ~~~i~P~~~~~v~t~~~i~~p~~~-~~~i~~RSs~~ 47 (92)
T cd07557 13 GIVLPPGETVLVPTGEAIELPEGY-VGLVFPRSSLA 47 (92)
T ss_pred CEEEcCCCEEEEEEeEEEEcCCCe-EEEEEcCchhh
Confidence 3666666644 34678888 69999997543
No 43
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=21.79 E-value=1e+02 Score=25.69 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=7.4
Q ss_pred ceeeecccCCcCCc
Q 027329 117 DFYDISLVDGFNVP 130 (225)
Q Consensus 117 d~YDVSlVdG~NlP 130 (225)
.+|.++.++-..+|
T Consensus 117 ~~~~~~~~~~p~ip 130 (212)
T PF11912_consen 117 YYYISSCSDNPYIP 130 (212)
T ss_pred eEEEEEEecCCcCC
Confidence 45566666644443
No 44
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=20.83 E-value=1.6e+02 Score=20.69 Aligned_cols=16 Identities=19% Similarity=0.185 Sum_probs=9.8
Q ss_pred ccceEEEEEcCCCCce
Q 027329 22 THGATFEIRNNCPFTV 37 (225)
Q Consensus 22 a~a~t~tv~N~C~~tV 37 (225)
....+++|+|....++
T Consensus 6 ~~~~~~tv~N~g~~~~ 21 (78)
T PF10633_consen 6 TVTVTLTVTNTGTAPL 21 (78)
T ss_dssp EEEEEEEEE--SSS-B
T ss_pred EEEEEEEEEECCCCce
Confidence 3457899999998765
No 45
>PF07771 TSGP1: Tick salivary peptide group 1; InterPro: IPR011694 This entry contains a group of peptides derived from a salivary gland cDNA library of the tick Ixodes scapularis (Black-legged tick) []. Also present are peptides from a related tick species, Ixodes ricinus (Sheep tick). They are characterised by a putative signal peptide, indicative of secretion, and conserved cysteine residues.
Probab=20.75 E-value=71 Score=25.49 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=20.3
Q ss_pred CccceeeeecccccCCCCCcccccCCCC
Q 027329 63 TKQARIWARTKCTFNAEGRGRCETGDCN 90 (225)
Q Consensus 63 w~sGriw~RtgCs~~~~g~~~C~TGdCg 90 (225)
|--|-+=-.+-|..+....+.|.-|.|.
T Consensus 51 W~~g~~~dGt~C~y~~g~~G~C~~G~C~ 78 (120)
T PF07771_consen 51 WDYGFYGDGTPCFYNTGQDGVCQDGLCY 78 (120)
T ss_pred eEEEEecCCCccccCCCCceEecCCEEE
Confidence 4334444567799887778999999986
Done!