BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027330
(225 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P9O|A Chain A, Crystal Structure Of Phosphopantothenoylcysteine
Synthetase
pdb|1P9O|B Chain B, Crystal Structure Of Phosphopantothenoylcysteine
Synthetase
Length = 313
Score = 134 bits (336), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 89/157 (56%), Gaps = 5/157 (3%)
Query: 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCS 102
RRV VTSGGT VPLE R VR++DNFSSG RGA S E + GY V+FLYR + PY
Sbjct: 37 RRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAH 96
Query: 103 SLPDDAFLECFEVTEESAVQVCQPYSE-----AVKRAIRDHHAAVAGGLLLKLPFTTIFE 157
P +L + + + +E A+R + A A G L + FTT+ +
Sbjct: 97 RFPPQTWLSALRPSGPALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLVVEFTTLAD 156
Query: 158 YLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSM 194
YL +LQ A + LGP +MFYLAAAVSDFYVP M
Sbjct: 157 YLHLLQAAAQALNPLGPSAMFYLAAAVSDFYVPVSEM 193
>pdb|2GK4|A Chain A, The Crystal Structure Of The Dna/pantothenate Metabolism
Flavoprotein From Streptococcus Pneumoniae
pdb|2GK4|B Chain B, The Crystal Structure Of The Dna/pantothenate Metabolism
Flavoprotein From Streptococcus Pneumoniae
Length = 232
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 47 CVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEP 99
VTSGGT+ ++ VR I N S+GH G TE L+ GY V + + +P
Sbjct: 7 LVTSGGTSEAID--SVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKP 57
>pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|B Chain B, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|C Chain C, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|D Chain D, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|E Chain E, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|F Chain F, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
Length = 409
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 107 DAFLECFEVTEESAVQVCQPYSE-AVKRAIRDHHAAVAGGLLLKLP---FTTIFE 157
D F + +TEES ++ P++E A KR +R HH + G LK P F I+E
Sbjct: 14 DVFSDRVLLTEESPIRKLVPFAEXAKKRGVRIHHLNI-GQPDLKTPEVFFERIYE 67
>pdb|4HHT|A Chain A, T. Maritima Rnase H2 G21s In Complex With Nucleic Acid
Substrate And Calcium Ions
Length = 237
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 72 HRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFE 114
H+G A+ EHL ++ + R + EP L DD E FE
Sbjct: 159 HKGYATKEHLNEIRKNGVLPIHRLSFEPVLELLTDDLLREFFE 201
>pdb|2ETJ|A Chain A, Crystal Structure Of Ribonuclease Hii (ec 3.1.26.4) (rnase
Hii) (tm0915) From Thermotoga Maritima At 1.74 A
Resolution
Length = 250
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 72 HRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFE 114
H+G A+ EHL ++ + R + EP L DD E FE
Sbjct: 172 HKGYATKEHLNEIRKNGVLPIHRLSFEPVLELLTDDLLREFFE 214
>pdb|3O3F|A Chain A, T. Maritima Rnase H2 D107n In Complex With Nucleic Acid
Substrate And Magnesium Ions
pdb|3O3H|A Chain A, T. Maritima Rnase H2 D107n In Complex With Nucleic Acid
Substrate And Manganese Ions
Length = 222
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 72 HRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFE 114
H+G A+ EHL ++ + R + EP L DD E FE
Sbjct: 159 HKGYATKEHLNEIRKNGVLPIHRLSFEPVLELLTDDLLREFFE 201
>pdb|3O3G|A Chain A, T. Maritima Rnase H2 In Complex With Nucleic Acid
Substrate And Calcium Ions
Length = 222
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 72 HRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFE 114
H+G A+ EHL ++ + R + EP L DD E FE
Sbjct: 159 HKGYATKEHLNEIRKNGVLPIHRLSFEPVLELLTDDLLREFFE 201
>pdb|1ZUJ|A Chain A, The Crystal Structure Of The Lactococcus Lactis Mg1363
Dpsa Protein
pdb|1ZUJ|B Chain B, The Crystal Structure Of The Lactococcus Lactis Mg1363
Dpsa Protein
pdb|1ZUJ|C Chain C, The Crystal Structure Of The Lactococcus Lactis Mg1363
Dpsa Protein
pdb|1ZUJ|D Chain D, The Crystal Structure Of The Lactococcus Lactis Mg1363
Dpsa Protein
Length = 179
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 123 VCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAA 182
+ + Y VK++ DHH AG +L + +E + ++Q + ++S F A
Sbjct: 6 IDEKYEAEVKKSEIDHHKPTAGAMLSHVLSNIFYEKISLMQA-GLYAKSANYRIKFREIA 64
Query: 183 AVSD--FYVPWKSMVTIHESILHTCSSFV 209
D FY+ + ++ +E + T FV
Sbjct: 65 LKEDEWFYLISEQLLDENELVPTTLDEFV 93
>pdb|1KWG|A Chain A, Crystal Structure Of Thermus Thermophilus A4
Beta-Galactosidase
pdb|1KWK|A Chain A, Crystal Structure Of Thermus Thermophilus A4
Beta-Galactosidase In Complex With Galactose
Length = 645
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 102 SSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQM 161
S PD F E V EE A P ++A + D+ AA + P + YL +
Sbjct: 370 DSAPDQGFFEAKRVAEELAALALPPVAQAPVALVFDYEAAW---IYEVQPQGAEWSYLGL 426
Query: 162 LQMIAVSSRSLG 173
+ + + R LG
Sbjct: 427 VYLFYSALRRLG 438
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,128,942
Number of Sequences: 62578
Number of extensions: 215384
Number of successful extensions: 455
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 446
Number of HSP's gapped (non-prelim): 9
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)