BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027330
(225 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LZM3|PPCS2_ARATH Phosphopantothenate--cysteine ligase 2 OS=Arabidopsis thaliana
GN=PPCS2 PE=2 SV=2
Length = 309
Score = 283 bits (723), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 130/191 (68%), Positives = 154/191 (80%)
Query: 5 LNSEIESFFDSAPPLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRY 64
+ EI SFF+S+PP + I + L EFI LNSS G RR+ CVTSGGTTVPLEQRCVRY
Sbjct: 1 MEDEISSFFESSPPQKNMEEILENLNEFIKLNSSSQGGRRIVCVTSGGTTVPLEQRCVRY 60
Query: 65 IDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVC 124
IDNFSSG+RGAASTE+ +K GYAVIFLYRRGTC+PYC SLPDD FLECFE ++++ +QV
Sbjct: 61 IDNFSSGNRGAASTENFVKAGYAVIFLYRRGTCQPYCRSLPDDPFLECFEFSDKTNIQVH 120
Query: 125 QPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAV 184
+ EAVK A+ D AVA G LLKLPF+TI+EYLQML++IA + + +GPCSMFYLAAAV
Sbjct: 121 TSHLEAVKMAVMDQQTAVAEGSLLKLPFSTIYEYLQMLRLIAEALKDVGPCSMFYLAAAV 180
Query: 185 SDFYVPWKSMV 195
SDFYVPWKSM
Sbjct: 181 SDFYVPWKSMT 191
>sp|Q8GXR5|PPCS1_ARATH Phosphopantothenate--cysteine ligase 1 OS=Arabidopsis thaliana
GN=PPCS1 PE=2 SV=1
Length = 317
Score = 273 bits (699), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 129/191 (67%), Positives = 151/191 (79%), Gaps = 1/191 (0%)
Query: 5 LNSEIESFFDSAPPLNDRAAISQKLKEFIALNSS-ESGTRRVACVTSGGTTVPLEQRCVR 63
+ EI SFF+S+PPL ++ I L +FI LNSS + G RR+ CVTSGGTTVPLEQRCVR
Sbjct: 8 VEDEISSFFESSPPLKNKEEIVANLNQFIELNSSCQGGMRRIVCVTSGGTTVPLEQRCVR 67
Query: 64 YIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQV 123
YIDNFSSG+RGAASTE+ +K GYAVIFLYRRGTC+PYC LPDD FLECFE + +QV
Sbjct: 68 YIDNFSSGNRGAASTENFVKAGYAVIFLYRRGTCQPYCRYLPDDPFLECFEFPDAKNIQV 127
Query: 124 CQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAA 183
+S AVK A+ D AAVA G LLKLPF+TI+EYLQML++IA + +GPCSMFYLAAA
Sbjct: 128 HGSHSGAVKMAVMDQQAAVAEGRLLKLPFSTIYEYLQMLRLIATILKDVGPCSMFYLAAA 187
Query: 184 VSDFYVPWKSM 194
VSDFYVPW SM
Sbjct: 188 VSDFYVPWLSM 198
>sp|Q9HAB8|PPCS_HUMAN Phosphopantothenate--cysteine ligase OS=Homo sapiens GN=PPCS PE=1
SV=2
Length = 311
Score = 134 bits (338), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 89/157 (56%), Gaps = 5/157 (3%)
Query: 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCS 102
RRV VTSGGT VPLE R VR++DNFSSG RGA S E + GY V+FLYR + PY
Sbjct: 35 RRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAH 94
Query: 103 SLPDDAFLECFEVTEESAVQVCQPYSE-----AVKRAIRDHHAAVAGGLLLKLPFTTIFE 157
P +L + + + +E A+R + A A G L + FTT+ +
Sbjct: 95 RFPPQTWLSALRPSGPALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLAVEFTTLAD 154
Query: 158 YLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSM 194
YL +LQ A + LGP +MFYLAAAVSDFYVP M
Sbjct: 155 YLHLLQAAAQALNPLGPSAMFYLAAAVSDFYVPVSEM 191
>sp|Q9USK7|YJ2I_SCHPO Uncharacterized protein C4B3.18 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC4B3.18 PE=3 SV=1
Length = 316
Score = 130 bits (327), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 107/185 (57%), Gaps = 5/185 (2%)
Query: 12 FFDSAPPLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSG 71
FF+ P N +S +++FI L +S ++ +A VTSGGT VPLEQ VR+IDNFS+G
Sbjct: 10 FFEENPCPNSLGDVSSLIEDFINL---QSNSQNIAFVTSGGTLVPLEQNTVRFIDNFSAG 66
Query: 72 HRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSL--PDDAFLECFEVTEESAVQVCQPYSE 129
+RGAAS E+ K GY+VIFLYR + P+ P E ++E V Q +
Sbjct: 67 NRGAASAEYFCKSGYSVIFLYRNYSLMPFTRRYEGPWTNLFERSNGSQEKPWIVKQEFQS 126
Query: 130 AVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 189
V A+ + L+ +P+TT+ EYL L+ IA + + ++FYLAAAVSDF++
Sbjct: 127 TVFNALNELDTYTKHHRLIMIPYTTLTEYLWYLKAIAERLQIIASRALFYLAAAVSDFHI 186
Query: 190 PWKSM 194
P K +
Sbjct: 187 PPKEL 191
>sp|Q8VDG5|PPCS_MOUSE Phosphopantothenate--cysteine ligase OS=Mus musculus GN=Ppcs PE=2
SV=1
Length = 311
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 105/188 (55%), Gaps = 9/188 (4%)
Query: 22 RAAISQKLKEFIALNSSESGT--RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTE 79
R A + + E +A ++ G RRV +TSGGT VPLE R VR++DNFSSG RGAAS E
Sbjct: 12 RPAGAARWAEVMARFAARLGEQGRRVVLITSGGTKVPLEARAVRFLDNFSSGRRGAASAE 71
Query: 80 HLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEES-----AVQVCQPYSEAVKRA 134
+ GY V+FLYR + PY P A+L + + +++ + A
Sbjct: 72 VFLAAGYGVLFLYRARSAFPYAHRFPPQAWLSALRPSGPAQSGKLSLEAEENALPGFAAA 131
Query: 135 IRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSM 194
++ + A A G L + FTT+ +YL +LQ A++ LG +MFYLAAAVSDFY+P M
Sbjct: 132 LQSYQEAAAAGTFLAVEFTTLADYLHLLQAAALALSPLGSSAMFYLAAAVSDFYIPVSEM 191
Query: 195 V--TIHES 200
IH S
Sbjct: 192 PEHKIHSS 199
>sp|P40506|PPCS_YEAST Phosphopantothenate--cysteine ligase CAB2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=CAB2 PE=1
SV=2
Length = 365
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 109/193 (56%), Gaps = 13/193 (6%)
Query: 7 SEIESFFDSAPPLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYID 66
+E E +F + P + + KEFI L S ++ +TSGGTTVPLE VR+ID
Sbjct: 38 TEEEQYFKTNPKPAYIDELIKDAKEFIDLQYS-LKRNKIVLITSGGTTVPLENNTVRFID 96
Query: 67 NFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLP---DDAFLECFEVTEESAVQV 123
NFS+G RGA+S E + GY+VIFL+R + PY S + FL+ +S ++
Sbjct: 97 NFSAGTRGASSAEQFLANGYSVIFLHREFSLTPYNRSFSHSINTLFLDYI----DSEGKI 152
Query: 124 CQPYSEAV--KRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLA 181
++E V + + D + LLL LPFTT+ +YL L+ IA + G C +FYLA
Sbjct: 153 KPEFAENVLKNKKLYDKYMEKEEKLLL-LPFTTVNQYLWSLKSIAKLLNNSG-C-LFYLA 209
Query: 182 AAVSDFYVPWKSM 194
AAVSDF+VP+ +
Sbjct: 210 AAVSDFFVPYSRL 222
>sp|Q58323|COABC_METJA Coenzyme A biosynthesis bifunctional protein CoaBC
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=coaBC
PE=3 SV=1
Length = 403
Score = 33.9 bits (76), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 31 EFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIF 90
E I N + G R + +GGT +++ VR I N SSG G A E K G+ V
Sbjct: 185 EKIGNNLKKEGNR--VLILNGGTVEFIDK--VRVISNLSSGKMGVALAEAFCKEGFYVEV 240
Query: 91 LYRRGTCEPY 100
+ G PY
Sbjct: 241 ITAMGLEPPY 250
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,770,103
Number of Sequences: 539616
Number of extensions: 2740069
Number of successful extensions: 7427
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7413
Number of HSP's gapped (non-prelim): 9
length of query: 225
length of database: 191,569,459
effective HSP length: 113
effective length of query: 112
effective length of database: 130,592,851
effective search space: 14626399312
effective search space used: 14626399312
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)