Query 027330
Match_columns 225
No_of_seqs 129 out of 1102
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 08:20:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027330.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027330hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2728 Uncharacterized conser 100.0 3.6E-60 7.8E-65 414.0 13.3 209 12-221 1-212 (302)
2 PF04127 DFP: DNA / pantothena 100.0 1.3E-38 2.8E-43 270.3 11.2 127 41-221 1-128 (185)
3 PRK13982 bifunctional SbtC-lik 100.0 9.1E-35 2E-39 276.5 14.8 148 18-222 231-381 (475)
4 PRK09620 hypothetical protein; 100.0 9.3E-33 2E-37 241.2 12.9 132 42-223 2-142 (229)
5 PRK05579 bifunctional phosphop 100.0 2.3E-31 4.9E-36 249.0 15.7 150 17-223 165-314 (399)
6 TIGR00521 coaBC_dfp phosphopan 100.0 1.1E-30 2.3E-35 243.8 15.2 152 17-223 161-312 (390)
7 PRK06732 phosphopantothenate-- 100.0 6.2E-30 1.3E-34 222.9 11.6 129 44-223 1-148 (229)
8 TIGR02114 coaB_strep phosphopa 100.0 2.7E-28 5.9E-33 212.3 10.8 128 45-223 1-147 (227)
9 COG0452 Dfp Phosphopantothenoy 99.9 2.4E-25 5.2E-30 208.0 13.2 149 18-223 161-309 (392)
10 PRK07533 enoyl-(acyl carrier p 96.8 0.016 3.4E-07 50.2 10.8 37 41-94 8-45 (258)
11 PRK07370 enoyl-(acyl carrier p 96.7 0.021 4.6E-07 49.6 10.6 38 41-94 4-41 (258)
12 PRK06114 short chain dehydroge 96.7 0.026 5.5E-07 48.5 11.0 37 41-95 6-42 (254)
13 PRK08589 short chain dehydroge 96.6 0.015 3.2E-07 50.7 9.3 36 41-94 4-39 (272)
14 PRK12823 benD 1,6-dihydroxycyc 96.6 0.015 3.2E-07 49.9 9.1 36 41-94 6-41 (260)
15 PRK07478 short chain dehydroge 96.6 0.034 7.4E-07 47.5 11.3 36 41-94 4-39 (254)
16 PRK06079 enoyl-(acyl carrier p 96.6 0.015 3.2E-07 50.3 9.1 38 41-94 5-42 (252)
17 PRK06841 short chain dehydroge 96.6 0.0081 1.8E-07 51.2 7.2 36 41-94 13-48 (255)
18 PRK07856 short chain dehydroge 96.6 0.016 3.5E-07 49.6 9.0 37 41-95 4-40 (252)
19 PRK08936 glucose-1-dehydrogena 96.5 0.018 3.9E-07 49.5 9.2 36 41-94 5-40 (261)
20 TIGR01832 kduD 2-deoxy-D-gluco 96.5 0.027 5.8E-07 47.8 10.0 36 41-94 3-38 (248)
21 PRK06935 2-deoxy-D-gluconate 3 96.5 0.031 6.6E-07 48.0 10.4 45 30-94 4-48 (258)
22 PRK08159 enoyl-(acyl carrier p 96.5 0.026 5.7E-07 49.6 10.0 37 41-93 8-44 (272)
23 PRK07791 short chain dehydroge 96.5 0.038 8.3E-07 48.8 11.1 36 41-94 4-39 (286)
24 PRK08594 enoyl-(acyl carrier p 96.5 0.021 4.6E-07 49.6 9.3 38 41-94 5-42 (257)
25 PRK07984 enoyl-(acyl carrier p 96.4 0.028 6E-07 49.3 10.0 37 42-94 5-41 (262)
26 PRK06523 short chain dehydroge 96.4 0.02 4.2E-07 49.1 8.8 37 41-95 7-43 (260)
27 PRK06128 oxidoreductase; Provi 96.4 0.03 6.4E-07 49.7 10.0 36 41-94 53-88 (300)
28 PRK07035 short chain dehydroge 96.4 0.046 9.9E-07 46.6 10.8 36 41-94 6-41 (252)
29 PRK12481 2-deoxy-D-gluconate 3 96.4 0.031 6.7E-07 48.1 9.6 36 41-94 6-41 (251)
30 PRK08628 short chain dehydroge 96.4 0.037 8.1E-07 47.3 10.1 36 41-94 5-40 (258)
31 PRK07062 short chain dehydroge 96.4 0.033 7.1E-07 47.9 9.7 36 41-94 6-41 (265)
32 PRK06179 short chain dehydroge 96.3 0.032 6.8E-07 48.2 9.6 26 70-95 13-38 (270)
33 PRK07097 gluconate 5-dehydroge 96.3 0.047 1E-06 47.1 10.5 36 41-94 8-43 (265)
34 PRK08213 gluconate 5-dehydroge 96.3 0.057 1.2E-06 46.3 10.8 36 41-94 10-45 (259)
35 PRK08690 enoyl-(acyl carrier p 96.3 0.038 8.2E-07 48.1 9.8 37 41-93 4-40 (261)
36 PRK12937 short chain dehydroge 96.3 0.063 1.4E-06 45.2 10.9 36 41-94 3-38 (245)
37 PRK05867 short chain dehydroge 96.3 0.057 1.2E-06 46.2 10.7 36 41-94 7-42 (253)
38 PRK06603 enoyl-(acyl carrier p 96.2 0.046 9.9E-07 47.5 10.0 36 41-93 6-42 (260)
39 PRK06398 aldose dehydrogenase; 96.2 0.04 8.7E-07 47.6 9.5 37 41-95 4-40 (258)
40 PRK07985 oxidoreductase; Provi 96.2 0.038 8.2E-07 49.1 9.5 36 41-94 47-82 (294)
41 PRK07109 short chain dehydroge 96.2 0.066 1.4E-06 48.7 11.2 36 41-94 6-41 (334)
42 PRK07523 gluconate 5-dehydroge 96.2 0.074 1.6E-06 45.5 10.9 36 41-94 8-43 (255)
43 PRK06138 short chain dehydroge 96.2 0.044 9.5E-07 46.4 9.4 36 41-94 3-38 (252)
44 PRK08226 short chain dehydroge 96.1 0.05 1.1E-06 46.6 9.7 35 42-94 5-39 (263)
45 PRK05717 oxidoreductase; Valid 96.1 0.06 1.3E-06 46.1 10.2 35 41-93 8-42 (255)
46 PRK06171 sorbitol-6-phosphate 96.1 0.043 9.2E-07 47.2 9.2 37 41-95 7-43 (266)
47 PRK07774 short chain dehydroge 96.1 0.06 1.3E-06 45.6 10.0 35 42-94 5-39 (250)
48 PRK08416 7-alpha-hydroxysteroi 96.1 0.083 1.8E-06 45.5 11.0 36 41-94 6-41 (260)
49 PRK07063 short chain dehydroge 96.1 0.076 1.6E-06 45.5 10.7 36 41-94 5-40 (260)
50 PRK06196 oxidoreductase; Provi 96.1 0.075 1.6E-06 47.5 10.9 36 41-94 24-59 (315)
51 PRK06505 enoyl-(acyl carrier p 96.1 0.056 1.2E-06 47.5 9.9 38 41-94 5-42 (271)
52 PRK13394 3-hydroxybutyrate deh 96.1 0.078 1.7E-06 45.1 10.4 36 41-94 5-40 (262)
53 PRK08415 enoyl-(acyl carrier p 96.1 0.061 1.3E-06 47.4 10.1 38 41-94 3-40 (274)
54 PRK08265 short chain dehydroge 96.0 0.046 9.9E-07 47.3 9.1 36 41-94 4-39 (261)
55 PRK07814 short chain dehydroge 96.0 0.083 1.8E-06 45.6 10.7 35 42-94 9-43 (263)
56 PRK06997 enoyl-(acyl carrier p 96.0 0.063 1.4E-06 46.7 9.9 37 41-93 4-40 (260)
57 PRK08277 D-mannonate oxidoredu 96.0 0.085 1.9E-06 45.7 10.7 36 41-94 8-43 (278)
58 PRK12744 short chain dehydroge 96.0 0.1 2.2E-06 44.7 11.0 36 41-94 6-41 (257)
59 PRK12748 3-ketoacyl-(acyl-carr 96.0 0.076 1.6E-06 45.5 10.1 38 41-94 3-40 (256)
60 PRK12938 acetyacetyl-CoA reduc 96.0 0.063 1.4E-06 45.4 9.4 35 42-94 2-36 (246)
61 PRK08643 acetoin reductase; Va 96.0 0.082 1.8E-06 45.1 10.2 25 70-94 11-35 (256)
62 TIGR01963 PHB_DH 3-hydroxybuty 95.9 0.076 1.6E-06 44.9 9.8 25 70-94 10-34 (255)
63 PF00106 adh_short: short chai 95.9 0.12 2.5E-06 41.0 10.3 26 70-95 9-34 (167)
64 PLN02253 xanthoxin dehydrogena 95.9 0.063 1.4E-06 46.6 9.3 36 41-94 16-51 (280)
65 PRK05876 short chain dehydroge 95.9 0.11 2.4E-06 45.6 10.9 36 41-94 4-39 (275)
66 PRK06124 gluconate 5-dehydroge 95.9 0.13 2.9E-06 43.8 11.1 36 41-94 9-44 (256)
67 PRK05866 short chain dehydroge 95.9 0.11 2.4E-06 46.2 10.9 36 41-94 38-73 (293)
68 PRK08278 short chain dehydroge 95.9 0.12 2.6E-06 45.1 11.0 37 41-95 4-40 (273)
69 PRK12429 3-hydroxybutyrate deh 95.9 0.096 2.1E-06 44.4 10.2 35 42-94 3-37 (258)
70 PRK08993 2-deoxy-D-gluconate 3 95.9 0.094 2E-06 45.0 10.2 35 41-93 8-42 (253)
71 PRK07792 fabG 3-ketoacyl-(acyl 95.9 0.057 1.2E-06 48.2 9.1 36 41-94 10-45 (306)
72 PRK05854 short chain dehydroge 95.9 0.073 1.6E-06 47.8 9.8 36 41-94 12-47 (313)
73 PRK06194 hypothetical protein; 95.9 0.09 1.9E-06 45.7 10.1 35 42-94 5-39 (287)
74 PRK08945 putative oxoacyl-(acy 95.8 0.05 1.1E-06 46.3 8.3 37 41-95 10-46 (247)
75 PRK08085 gluconate 5-dehydroge 95.8 0.1 2.2E-06 44.5 10.2 36 41-94 7-42 (254)
76 PRK06500 short chain dehydroge 95.8 0.11 2.3E-06 43.9 10.2 35 42-94 5-39 (249)
77 PRK05557 fabG 3-ketoacyl-(acyl 95.8 0.14 3E-06 42.8 10.8 35 42-94 4-38 (248)
78 PRK12743 oxidoreductase; Provi 95.8 0.13 2.8E-06 44.1 10.8 25 70-94 11-35 (256)
79 PRK12939 short chain dehydroge 95.8 0.15 3.2E-06 43.0 10.8 35 42-94 6-40 (250)
80 PRK06200 2,3-dihydroxy-2,3-dih 95.8 0.098 2.1E-06 45.0 9.8 36 41-94 4-39 (263)
81 PRK06197 short chain dehydroge 95.7 0.088 1.9E-06 46.7 9.8 36 41-94 14-49 (306)
82 PRK12746 short chain dehydroge 95.7 0.16 3.5E-06 43.1 10.9 33 42-92 5-37 (254)
83 PRK07666 fabG 3-ketoacyl-(acyl 95.7 0.13 2.8E-06 43.4 10.1 35 42-94 6-40 (239)
84 PRK12745 3-ketoacyl-(acyl-carr 95.7 0.094 2E-06 44.5 9.3 25 70-94 11-35 (256)
85 PRK12829 short chain dehydroge 95.7 0.16 3.5E-06 43.2 10.8 36 41-94 9-44 (264)
86 PRK08303 short chain dehydroge 95.6 0.15 3.2E-06 45.9 10.9 37 41-95 6-42 (305)
87 PRK12827 short chain dehydroge 95.6 0.18 3.9E-06 42.3 10.9 35 42-94 5-39 (249)
88 PRK05875 short chain dehydroge 95.6 0.12 2.6E-06 44.6 10.1 36 41-94 5-40 (276)
89 PRK07825 short chain dehydroge 95.6 0.19 4.1E-06 43.5 11.2 36 41-94 3-38 (273)
90 PRK06077 fabG 3-ketoacyl-(acyl 95.6 0.2 4.4E-06 42.3 11.1 35 42-94 5-39 (252)
91 PRK12826 3-ketoacyl-(acyl-carr 95.6 0.13 2.8E-06 43.2 9.9 35 42-94 5-39 (251)
92 PRK06701 short chain dehydroge 95.6 0.1 2.2E-06 46.3 9.6 36 41-94 44-79 (290)
93 TIGR03325 BphB_TodD cis-2,3-di 95.5 0.21 4.6E-06 42.9 11.2 36 41-94 3-38 (262)
94 PRK08862 short chain dehydroge 95.5 0.26 5.7E-06 42.2 11.6 36 41-94 3-38 (227)
95 PRK07067 sorbitol dehydrogenas 95.5 0.15 3.3E-06 43.6 10.1 36 41-94 4-39 (257)
96 PRK08063 enoyl-(acyl carrier p 95.5 0.21 4.5E-06 42.3 10.8 33 42-92 3-35 (250)
97 PRK06139 short chain dehydroge 95.5 0.18 3.9E-06 46.1 11.0 36 41-94 5-40 (330)
98 PRK12859 3-ketoacyl-(acyl-carr 95.5 0.24 5.2E-06 42.7 11.2 37 41-93 4-40 (256)
99 PRK08220 2,3-dihydroxybenzoate 95.5 0.11 2.3E-06 44.1 8.9 37 41-95 6-42 (252)
100 PRK07806 short chain dehydroge 95.5 0.15 3.2E-06 43.2 9.8 36 41-94 4-39 (248)
101 PRK12935 acetoacetyl-CoA reduc 95.4 0.21 4.5E-06 42.2 10.7 35 42-94 5-39 (247)
102 PRK09242 tropinone reductase; 95.4 0.23 4.9E-06 42.5 10.9 36 41-94 7-42 (257)
103 PRK09134 short chain dehydroge 95.4 0.22 4.7E-06 42.7 10.7 36 41-94 7-42 (258)
104 PRK06484 short chain dehydroge 95.3 0.21 4.5E-06 47.5 11.4 72 21-94 217-302 (520)
105 PRK12747 short chain dehydroge 95.3 0.26 5.6E-06 42.0 11.0 34 42-93 3-36 (252)
106 PRK07074 short chain dehydroge 95.3 0.14 3.1E-06 43.6 9.2 34 43-94 2-35 (257)
107 PRK06484 short chain dehydroge 95.2 0.17 3.7E-06 48.1 10.3 36 41-94 3-38 (520)
108 PRK09135 pteridine reductase; 95.2 0.11 2.4E-06 43.6 8.1 35 42-94 5-39 (249)
109 PRK07577 short chain dehydroge 95.1 0.19 4.1E-06 42.1 9.4 37 42-96 2-38 (234)
110 PRK05872 short chain dehydroge 95.1 0.19 4E-06 44.6 9.8 36 41-94 7-42 (296)
111 PRK06172 short chain dehydroge 95.1 0.24 5.1E-06 42.2 10.1 37 41-95 5-41 (253)
112 TIGR01829 AcAcCoA_reduct aceto 95.1 0.32 7E-06 40.7 10.8 25 70-94 9-33 (242)
113 PRK06720 hypothetical protein; 95.1 0.44 9.5E-06 39.6 11.4 36 41-94 14-49 (169)
114 PRK06113 7-alpha-hydroxysteroi 95.1 0.33 7.2E-06 41.5 10.9 36 41-94 9-44 (255)
115 PRK06182 short chain dehydroge 95.1 0.3 6.5E-06 42.3 10.8 35 42-94 2-36 (273)
116 PRK08251 short chain dehydroge 95.1 0.32 6.8E-06 41.2 10.7 25 70-94 11-35 (248)
117 PRK06949 short chain dehydroge 95.1 0.33 7.2E-06 41.2 10.8 36 41-94 7-42 (258)
118 PRK07890 short chain dehydroge 95.1 0.35 7.6E-06 41.1 10.9 35 42-94 4-38 (258)
119 TIGR03206 benzo_BadH 2-hydroxy 95.0 0.35 7.5E-06 40.8 10.8 35 42-94 2-36 (250)
120 PRK05653 fabG 3-ketoacyl-(acyl 95.0 0.32 6.9E-06 40.5 10.4 35 42-94 4-38 (246)
121 PRK06463 fabG 3-ketoacyl-(acyl 95.0 0.17 3.7E-06 43.3 8.9 36 41-94 5-40 (255)
122 PRK07576 short chain dehydroge 94.9 0.38 8.3E-06 41.6 10.9 36 41-94 7-42 (264)
123 PRK08264 short chain dehydroge 94.9 0.17 3.6E-06 42.6 8.3 37 42-96 5-42 (238)
124 PRK07889 enoyl-(acyl carrier p 94.8 0.19 4.2E-06 43.5 8.7 38 41-94 5-42 (256)
125 PF13561 adh_short_C2: Enoyl-( 94.7 0.3 6.5E-06 41.6 9.6 82 69-187 4-86 (241)
126 PRK07024 short chain dehydroge 94.7 0.29 6.4E-06 41.9 9.6 25 70-94 11-35 (257)
127 PRK06180 short chain dehydroge 94.7 0.4 8.6E-06 41.8 10.5 35 42-94 3-37 (277)
128 PRK07454 short chain dehydroge 94.7 0.43 9.4E-06 40.2 10.5 25 70-94 15-39 (241)
129 PRK07453 protochlorophyllide o 94.7 0.33 7.2E-06 43.3 10.2 35 42-94 5-39 (322)
130 PRK12825 fabG 3-ketoacyl-(acyl 94.7 0.27 5.9E-06 40.9 9.0 36 42-95 5-40 (249)
131 PRK06123 short chain dehydroge 94.6 0.45 9.7E-06 40.2 10.4 23 71-93 12-34 (248)
132 PRK08642 fabG 3-ketoacyl-(acyl 94.6 0.39 8.4E-06 40.6 10.0 36 41-94 3-38 (253)
133 PRK08217 fabG 3-ketoacyl-(acyl 94.6 0.56 1.2E-05 39.4 10.9 35 42-94 4-38 (253)
134 PRK07677 short chain dehydroge 94.6 0.46 9.9E-06 40.5 10.4 25 70-94 10-34 (252)
135 PRK05565 fabG 3-ketoacyl-(acyl 94.5 0.64 1.4E-05 38.9 10.9 35 41-93 3-38 (247)
136 PRK07326 short chain dehydroge 94.4 0.4 8.6E-06 40.2 9.6 25 70-94 15-39 (237)
137 PRK06198 short chain dehydroge 94.4 0.35 7.7E-06 41.2 9.4 36 41-94 4-40 (260)
138 PRK06181 short chain dehydroge 94.4 0.56 1.2E-05 40.1 10.6 25 70-94 10-34 (263)
139 PRK06947 glucose-1-dehydrogena 94.3 0.3 6.6E-06 41.3 8.7 25 70-94 11-35 (248)
140 PRK07201 short chain dehydroge 94.3 0.43 9.4E-06 46.7 10.8 36 41-94 369-404 (657)
141 PRK06482 short chain dehydroge 94.3 0.35 7.5E-06 41.9 9.1 25 70-94 11-35 (276)
142 COG4221 Short-chain alcohol de 94.0 0.4 8.7E-06 42.9 8.9 28 68-96 14-41 (246)
143 PRK12936 3-ketoacyl-(acyl-carr 93.9 0.79 1.7E-05 38.4 10.3 34 42-93 5-38 (245)
144 PRK05693 short chain dehydroge 93.9 0.38 8.2E-06 41.7 8.5 25 70-94 10-34 (274)
145 TIGR01289 LPOR light-dependent 93.8 0.61 1.3E-05 41.9 9.9 25 70-94 12-37 (314)
146 PRK07231 fabG 3-ketoacyl-(acyl 93.7 0.12 2.7E-06 43.5 5.1 37 41-95 3-39 (251)
147 PRK06914 short chain dehydroge 93.7 0.36 7.8E-06 41.8 8.1 35 42-94 2-36 (280)
148 PRK08261 fabG 3-ketoacyl-(acyl 93.5 2.1 4.5E-05 40.2 13.3 73 19-93 165-242 (450)
149 TIGR02632 RhaD_aldol-ADH rhamn 93.4 0.54 1.2E-05 47.3 9.8 36 41-94 412-447 (676)
150 PRK09186 flagellin modificatio 93.2 0.17 3.6E-06 43.0 5.1 35 42-94 3-37 (256)
151 PRK05855 short chain dehydroge 93.0 1.3 2.9E-05 41.9 11.3 74 18-94 274-348 (582)
152 PRK08339 short chain dehydroge 92.9 0.19 4.2E-06 43.6 5.1 36 41-94 6-41 (263)
153 COG1086 Predicted nucleoside-d 92.6 0.7 1.5E-05 46.0 9.0 37 42-96 249-285 (588)
154 PRK07775 short chain dehydroge 92.5 1.4 2.9E-05 38.4 10.0 35 42-94 9-43 (274)
155 PRK08340 glucose-1-dehydrogena 92.5 1.2 2.6E-05 38.1 9.6 26 69-94 8-33 (259)
156 PRK07102 short chain dehydroge 92.5 0.22 4.7E-06 42.2 4.8 26 70-95 10-35 (243)
157 PRK12367 short chain dehydroge 92.4 0.22 4.8E-06 43.4 4.9 37 41-95 12-48 (245)
158 PLN02662 cinnamyl-alcohol dehy 92.4 0.25 5.4E-06 43.6 5.3 36 42-95 3-38 (322)
159 TIGR02622 CDP_4_6_dhtase CDP-g 92.4 0.24 5.2E-06 44.8 5.3 37 42-96 3-39 (349)
160 PLN02583 cinnamoyl-CoA reducta 92.4 0.25 5.4E-06 43.9 5.2 35 42-94 5-39 (297)
161 PRK09072 short chain dehydroge 92.2 0.26 5.7E-06 42.3 5.0 36 42-95 4-39 (263)
162 PRK08703 short chain dehydroge 92.1 0.3 6.5E-06 41.3 5.2 37 41-95 4-40 (239)
163 PRK12828 short chain dehydroge 92.1 0.28 6.1E-06 40.8 5.0 36 41-94 5-40 (239)
164 KOG1502 Flavonol reductase/cin 92.1 0.76 1.6E-05 42.8 8.2 37 42-96 5-41 (327)
165 PLN02653 GDP-mannose 4,6-dehyd 92.1 0.29 6.4E-06 43.9 5.4 37 41-95 4-40 (340)
166 PRK06483 dihydromonapterin red 92.0 0.28 6E-06 41.4 4.9 26 70-95 11-36 (236)
167 PRK12384 sorbitol-6-phosphate 92.0 0.29 6.2E-06 41.8 5.0 34 43-94 2-35 (259)
168 PRK13656 trans-2-enoyl-CoA red 91.8 3.1 6.8E-05 39.7 12.1 66 9-93 7-74 (398)
169 PRK06057 short chain dehydroge 91.8 0.33 7.1E-06 41.5 5.1 36 41-94 5-40 (255)
170 PLN02986 cinnamyl-alcohol dehy 91.7 0.33 7.2E-06 43.1 5.2 37 42-96 4-40 (322)
171 KOG1201 Hydroxysteroid 17-beta 91.7 0.44 9.5E-06 43.8 6.0 34 41-92 36-69 (300)
172 PRK05786 fabG 3-ketoacyl-(acyl 91.6 0.36 7.8E-06 40.5 5.1 36 42-95 4-39 (238)
173 PLN02780 ketoreductase/ oxidor 91.6 0.29 6.2E-06 44.4 4.8 36 42-95 52-87 (320)
174 PRK07069 short chain dehydroge 91.4 0.76 1.6E-05 38.7 6.9 25 70-94 8-32 (251)
175 PRK06550 fabG 3-ketoacyl-(acyl 91.4 0.38 8.1E-06 40.4 5.0 37 41-95 3-39 (235)
176 PRK06125 short chain dehydroge 91.4 0.4 8.8E-06 41.1 5.2 36 41-94 5-40 (259)
177 PRK12742 oxidoreductase; Provi 91.2 0.44 9.6E-06 39.9 5.2 36 41-94 4-39 (237)
178 PRK15181 Vi polysaccharide bio 91.1 0.43 9.4E-06 43.3 5.5 36 41-94 13-48 (348)
179 PRK05993 short chain dehydroge 91.0 0.4 8.6E-06 41.8 4.9 26 70-95 13-38 (277)
180 PRK07831 short chain dehydroge 90.9 0.44 9.5E-06 40.9 5.1 36 41-94 15-51 (262)
181 PRK08324 short chain dehydroge 90.9 1.7 3.6E-05 43.7 9.8 37 41-95 420-456 (681)
182 COG1028 FabG Dehydrogenases wi 90.9 0.48 1E-05 40.1 5.2 38 41-96 3-40 (251)
183 PLN02686 cinnamoyl-CoA reducta 90.8 0.42 9.1E-06 44.0 5.2 27 68-94 60-86 (367)
184 PRK07904 short chain dehydroge 90.8 0.46 9.9E-06 41.1 5.1 36 42-95 7-43 (253)
185 PLN00198 anthocyanidin reducta 90.8 0.47 1E-05 42.5 5.3 37 41-95 7-43 (338)
186 PRK06300 enoyl-(acyl carrier p 90.7 0.44 9.5E-06 43.2 5.0 36 41-92 6-41 (299)
187 COG0300 DltE Short-chain dehyd 90.6 1.7 3.8E-05 39.2 8.7 37 42-96 5-41 (265)
188 KOG1205 Predicted dehydrogenas 90.4 1.6 3.5E-05 39.7 8.5 37 41-95 10-46 (282)
189 PLN02989 cinnamyl-alcohol dehy 90.3 0.49 1.1E-05 42.0 5.0 36 42-95 4-39 (325)
190 PRK08177 short chain dehydroge 90.2 0.51 1.1E-05 39.6 4.8 26 70-95 10-35 (225)
191 PLN00016 RNA-binding protein; 90.1 0.43 9.3E-06 43.9 4.5 28 69-96 64-91 (378)
192 PRK12446 undecaprenyldiphospho 89.7 0.36 7.7E-06 44.6 3.7 39 44-96 2-40 (352)
193 PRK05599 hypothetical protein; 89.7 4.9 0.00011 34.4 10.5 23 71-94 10-32 (246)
194 PLN02572 UDP-sulfoquinovose sy 89.6 0.55 1.2E-05 44.7 5.0 35 41-93 45-79 (442)
195 PRK05650 short chain dehydroge 89.6 3.2 6.9E-05 35.8 9.4 26 69-94 8-33 (270)
196 PRK08263 short chain dehydroge 89.6 0.66 1.4E-05 40.2 5.1 26 70-95 12-37 (275)
197 KOG1014 17 beta-hydroxysteroid 89.5 0.79 1.7E-05 42.4 5.7 105 70-216 58-166 (312)
198 PRK09291 short chain dehydroge 89.5 0.66 1.4E-05 39.4 4.9 25 70-94 11-35 (257)
199 PLN02896 cinnamyl-alcohol dehy 89.5 0.63 1.4E-05 42.1 5.1 35 42-94 9-43 (353)
200 TIGR02415 23BDH acetoin reduct 89.4 2.9 6.3E-05 35.3 8.8 26 69-94 8-33 (254)
201 PF13460 NAD_binding_10: NADH( 89.3 0.47 1E-05 38.3 3.8 28 69-96 6-33 (183)
202 PLN02240 UDP-glucose 4-epimera 89.3 0.76 1.6E-05 41.1 5.4 36 41-94 3-38 (352)
203 PF01073 3Beta_HSD: 3-beta hyd 89.3 1.3 2.8E-05 39.6 6.8 27 69-95 5-33 (280)
204 PRK07832 short chain dehydroge 89.3 4 8.8E-05 35.2 9.8 25 70-94 9-33 (272)
205 TIGR01472 gmd GDP-mannose 4,6- 89.2 0.63 1.4E-05 41.9 4.8 26 70-95 9-34 (343)
206 PRK09730 putative NAD(P)-bindi 89.2 3.3 7.3E-05 34.6 9.0 24 70-93 10-33 (247)
207 TIGR01830 3oxo_ACP_reduc 3-oxo 89.1 4.1 8.9E-05 33.8 9.4 27 69-95 6-32 (239)
208 COG1089 Gmd GDP-D-mannose dehy 89.0 1.1 2.4E-05 41.5 6.2 31 69-99 10-40 (345)
209 TIGR02685 pter_reduc_Leis pter 89.0 3 6.5E-05 35.9 8.8 25 70-94 10-34 (267)
210 smart00822 PKS_KR This enzymat 89.0 3.9 8.3E-05 31.6 8.7 26 69-94 8-34 (180)
211 PLN02650 dihydroflavonol-4-red 88.9 0.72 1.6E-05 41.6 5.0 36 42-95 4-39 (351)
212 PRK09987 dTDP-4-dehydrorhamnos 88.8 2 4.3E-05 38.2 7.7 25 69-94 8-32 (299)
213 PLN02214 cinnamoyl-CoA reducta 88.7 0.8 1.7E-05 41.6 5.1 36 42-95 9-44 (342)
214 TIGR03466 HpnA hopanoid-associ 88.7 2.3 4.9E-05 37.2 7.9 28 69-96 8-35 (328)
215 PLN02730 enoyl-[acyl-carrier-p 88.6 0.73 1.6E-05 41.9 4.8 34 41-90 7-40 (303)
216 PLN02657 3,8-divinyl protochlo 88.6 0.77 1.7E-05 42.9 5.1 37 42-96 59-95 (390)
217 PLN03209 translocon at the inn 88.5 0.76 1.6E-05 45.8 5.2 26 70-95 89-114 (576)
218 PRK07424 bifunctional sterol d 88.4 0.84 1.8E-05 43.4 5.3 37 41-95 176-212 (406)
219 TIGR01831 fabG_rel 3-oxoacyl-( 87.8 2.8 6E-05 35.2 7.6 26 70-95 7-32 (239)
220 PLN02695 GDP-D-mannose-3',5'-e 87.4 1.1 2.3E-05 41.4 5.2 37 41-95 19-55 (370)
221 PRK07060 short chain dehydroge 87.4 1.2 2.7E-05 37.3 5.2 36 42-95 8-43 (245)
222 PRK12824 acetoacetyl-CoA reduc 87.3 5.3 0.00012 33.3 9.0 26 70-95 11-36 (245)
223 PF03033 Glyco_transf_28: Glyc 87.1 0.44 9.5E-06 36.9 2.1 35 46-94 1-35 (139)
224 PLN02206 UDP-glucuronate decar 86.7 1.1 2.5E-05 42.7 5.1 32 63-94 121-152 (442)
225 COG2910 Putative NADH-flavin r 86.3 0.74 1.6E-05 40.1 3.2 32 69-100 8-39 (211)
226 PRK08267 short chain dehydroge 86.2 1.3 2.8E-05 37.9 4.8 26 69-94 9-34 (260)
227 KOG0725 Reductases with broad 86.0 1.2 2.7E-05 39.8 4.7 38 41-96 6-43 (270)
228 PLN02778 3,5-epimerase/4-reduc 85.9 1.3 2.8E-05 39.6 4.8 33 42-92 8-40 (298)
229 TIGR03589 PseB UDP-N-acetylglu 84.5 1.6 3.6E-05 39.2 4.8 35 42-94 3-39 (324)
230 PF02737 3HCDH_N: 3-hydroxyacy 84.3 1.1 2.4E-05 37.5 3.4 25 70-94 7-31 (180)
231 PRK06924 short chain dehydroge 84.1 1.2 2.7E-05 37.6 3.6 27 69-95 9-35 (251)
232 PLN00015 protochlorophyllide r 83.7 6.2 0.00013 35.1 8.1 26 69-94 5-31 (308)
233 COG1249 Lpd Pyruvate/2-oxoglut 83.5 2.4 5.3E-05 41.0 5.8 56 43-100 136-211 (454)
234 PLN02166 dTDP-glucose 4,6-dehy 83.0 2 4.4E-05 40.9 4.9 32 63-94 122-153 (436)
235 PLN02427 UDP-apiose/xylose syn 82.8 2.3 4.9E-05 39.1 5.1 37 41-95 12-49 (386)
236 PRK10217 dTDP-glucose 4,6-dehy 82.8 1.9 4.1E-05 38.8 4.5 26 69-94 9-34 (355)
237 PRK07041 short chain dehydroge 82.6 1.6 3.4E-05 36.4 3.7 26 69-94 5-30 (230)
238 PRK06101 short chain dehydroge 82.6 1.5 3.3E-05 37.1 3.7 26 69-94 9-34 (240)
239 PF04321 RmlD_sub_bind: RmlD s 82.6 2.8 6.1E-05 37.3 5.5 26 69-94 8-33 (286)
240 TIGR01133 murG undecaprenyldip 82.6 1.7 3.6E-05 38.5 4.0 38 44-95 1-38 (348)
241 PF00070 Pyr_redox: Pyridine n 82.3 2.8 6.1E-05 29.9 4.4 30 70-99 7-36 (80)
242 PF03807 F420_oxidored: NADP o 81.3 2.3 5E-05 31.0 3.7 26 69-94 6-34 (96)
243 PRK08125 bifunctional UDP-gluc 80.9 2.5 5.3E-05 42.2 4.9 37 42-96 314-351 (660)
244 PRK07578 short chain dehydroge 79.8 6.3 0.00014 32.3 6.3 26 69-95 8-33 (199)
245 PF07993 NAD_binding_4: Male s 79.6 2.5 5.4E-05 36.5 4.0 28 69-96 4-33 (249)
246 PRK07334 threonine dehydratase 79.5 17 0.00036 34.3 9.7 101 68-181 77-178 (403)
247 PF01370 Epimerase: NAD depend 79.2 2.9 6.2E-05 34.7 4.1 30 69-98 6-35 (236)
248 PRK10538 malonic semialdehyde 79.1 2.4 5.3E-05 36.0 3.7 26 69-94 8-33 (248)
249 PLN02970 serine racemase 78.8 13 0.00027 34.1 8.5 78 64-154 78-155 (328)
250 PRK07023 short chain dehydroge 78.5 2.7 5.8E-05 35.5 3.7 27 69-95 9-35 (243)
251 TIGR03649 ergot_EASG ergot alk 78.3 2.5 5.3E-05 36.9 3.6 28 69-96 7-34 (285)
252 COG0452 Dfp Phosphopantothenoy 77.5 0.12 2.6E-06 49.0 -5.3 122 43-167 79-205 (392)
253 PRK06940 short chain dehydroge 77.4 16 0.00034 31.9 8.4 22 72-94 12-33 (275)
254 PRK07819 3-hydroxybutyryl-CoA 77.0 3.4 7.3E-05 37.1 4.1 34 61-94 4-37 (286)
255 PRK05884 short chain dehydroge 76.9 3.1 6.7E-05 35.2 3.7 25 70-94 9-33 (223)
256 TIGR01214 rmlD dTDP-4-dehydror 76.7 2.7 5.9E-05 36.3 3.4 26 69-94 7-32 (287)
257 cd00674 LysRS_core_class_I cat 76.5 9.9 0.00022 35.7 7.2 53 43-100 18-70 (353)
258 KOG1209 1-Acyl dihydroxyaceton 75.5 5.2 0.00011 35.9 4.7 32 65-96 12-43 (289)
259 PRK07048 serine/threonine dehy 75.5 15 0.00031 33.4 7.9 28 68-95 78-105 (321)
260 COG3967 DltE Short-chain dehyd 75.2 5.2 0.00011 35.6 4.7 37 41-95 3-39 (245)
261 COG2085 Predicted dinucleotide 75.2 3.3 7.1E-05 36.4 3.4 28 68-95 7-34 (211)
262 PRK00750 lysK lysyl-tRNA synth 75.0 11 0.00024 36.9 7.4 68 21-100 7-74 (510)
263 CHL00194 ycf39 Ycf39; Provisio 74.9 3.6 7.7E-05 36.8 3.7 28 69-96 8-35 (317)
264 PRK06849 hypothetical protein; 74.3 5.6 0.00012 36.8 5.0 35 42-94 3-37 (389)
265 PF03446 NAD_binding_2: NAD bi 74.1 4.3 9.3E-05 33.1 3.7 25 70-94 9-33 (163)
266 cd03785 GT1_MurG MurG is an N- 74.0 4.5 9.7E-05 35.8 4.1 38 45-96 1-38 (350)
267 PRK06382 threonine dehydratase 73.7 26 0.00057 33.0 9.4 77 68-156 79-155 (406)
268 PRK14106 murD UDP-N-acetylmura 73.6 6.2 0.00013 37.0 5.1 34 42-94 4-37 (450)
269 TIGR02813 omega_3_PfaA polyket 73.6 26 0.00057 41.0 10.8 38 56-94 1993-2031(2582)
270 PRK11908 NAD-dependent epimera 73.4 5.7 0.00012 35.7 4.7 25 70-94 10-35 (347)
271 TIGR01777 yfcH conserved hypot 73.3 4.9 0.00011 34.5 4.1 28 69-96 6-33 (292)
272 PRK08017 oxidoreductase; Provi 73.2 4.3 9.3E-05 34.3 3.6 26 70-95 11-36 (256)
273 PLN00141 Tic62-NAD(P)-related 73.1 4.3 9.3E-05 34.8 3.7 36 42-95 16-51 (251)
274 PF05368 NmrA: NmrA-like famil 72.6 4.1 8.8E-05 34.4 3.3 28 69-96 6-33 (233)
275 PF02719 Polysacc_synt_2: Poly 72.5 10 0.00022 34.8 6.0 24 70-93 7-31 (293)
276 cd01075 NAD_bind_Leu_Phe_Val_D 72.0 23 0.00049 30.1 7.8 49 25-92 9-58 (200)
277 PRK14194 bifunctional 5,10-met 71.7 4.2 9.1E-05 37.4 3.4 56 18-96 139-194 (301)
278 COG4821 Uncharacterized protei 70.7 9.5 0.00021 33.7 5.2 55 22-94 86-140 (243)
279 TIGR01915 npdG NADPH-dependent 70.5 5.4 0.00012 34.1 3.6 26 69-94 8-33 (219)
280 KOG4169 15-hydroxyprostaglandi 70.4 20 0.00044 32.3 7.3 34 41-92 3-36 (261)
281 PRK11150 rfaD ADP-L-glycero-D- 70.4 4.7 0.0001 35.4 3.4 27 69-95 7-33 (308)
282 cd01562 Thr-dehyd Threonine de 70.3 30 0.00066 30.6 8.6 29 68-96 71-99 (304)
283 PRK06129 3-hydroxyacyl-CoA deh 70.1 4.8 0.0001 36.2 3.4 25 70-94 10-34 (308)
284 TIGR02991 ectoine_eutB ectoine 70.1 38 0.00083 30.8 9.3 29 67-95 72-100 (317)
285 PRK06718 precorrin-2 dehydroge 69.9 8.5 0.00018 32.9 4.7 34 41-93 8-41 (202)
286 PRK10084 dTDP-glucose 4,6 dehy 69.8 7 0.00015 35.0 4.4 23 70-92 9-31 (352)
287 PF08659 KR: KR domain; Inter 69.6 17 0.00036 30.0 6.3 26 70-95 9-35 (181)
288 TIGR01127 ilvA_1Cterm threonin 69.4 39 0.00085 31.3 9.4 28 68-95 54-81 (380)
289 PRK08198 threonine dehydratase 68.8 39 0.00084 31.6 9.3 28 68-95 76-103 (404)
290 PF01210 NAD_Gly3P_dh_N: NAD-d 68.7 5.1 0.00011 32.5 3.0 27 69-95 6-32 (157)
291 cd01132 F1_ATPase_alpha F1 ATP 68.2 12 0.00026 34.0 5.6 43 43-93 126-168 (274)
292 PRK06953 short chain dehydroge 67.8 6.6 0.00014 32.8 3.6 25 70-94 10-34 (222)
293 PRK06719 precorrin-2 dehydroge 67.2 11 0.00023 31.0 4.6 33 41-92 11-43 (157)
294 PF02558 ApbA: Ketopantoate re 67.1 7.1 0.00015 30.7 3.5 26 70-95 6-31 (151)
295 COG1091 RfbD dTDP-4-dehydrorha 66.6 13 0.00029 33.9 5.4 26 69-95 8-33 (281)
296 COG1250 FadB 3-hydroxyacyl-CoA 65.9 5.2 0.00011 36.9 2.7 26 69-94 10-35 (307)
297 PRK12320 hypothetical protein; 65.7 9.4 0.0002 39.1 4.7 26 69-94 8-33 (699)
298 TIGR01275 ACC_deam_rel pyridox 65.3 11 0.00024 33.8 4.8 38 42-95 54-91 (311)
299 PF00994 MoCF_biosynth: Probab 65.2 7.1 0.00015 31.1 3.1 33 18-58 39-71 (144)
300 cd01563 Thr-synth_1 Threonine 65.2 33 0.00073 30.8 7.9 29 68-96 76-104 (324)
301 PRK06815 hypothetical protein; 65.0 42 0.0009 30.4 8.5 31 64-95 71-101 (317)
302 PRK07066 3-hydroxybutyryl-CoA 64.8 8.6 0.00019 35.5 4.0 33 61-93 6-38 (321)
303 cd01134 V_A-ATPase_A V/A-type 64.6 8.8 0.00019 36.4 4.0 25 70-94 238-262 (369)
304 PRK14191 bifunctional 5,10-met 64.5 32 0.0007 31.4 7.6 55 18-95 137-191 (285)
305 TIGR02279 PaaC-3OHAcCoADH 3-hy 64.5 7 0.00015 38.2 3.5 25 70-94 13-37 (503)
306 PRK00726 murG undecaprenyldiph 64.3 10 0.00022 34.0 4.3 39 44-96 2-40 (357)
307 PLN02545 3-hydroxybutyryl-CoA 64.3 7.6 0.00016 34.6 3.4 26 69-94 11-36 (295)
308 PRK10675 UDP-galactose-4-epime 64.2 8.3 0.00018 34.2 3.7 26 69-94 8-33 (338)
309 PRK07530 3-hydroxybutyryl-CoA 64.1 7.9 0.00017 34.4 3.5 26 69-94 11-36 (292)
310 KOG1429 dTDP-glucose 4-6-dehyd 64.1 12 0.00027 34.8 4.8 35 41-93 25-59 (350)
311 PRK14619 NAD(P)H-dependent gly 63.6 8.7 0.00019 34.6 3.7 27 69-95 11-37 (308)
312 TIGR02667 moaB_proteo molybden 63.4 9.7 0.00021 31.5 3.7 35 18-58 44-78 (163)
313 PRK08638 threonine dehydratase 63.2 39 0.00084 31.1 8.0 30 66-95 79-108 (333)
314 PRK06115 dihydrolipoamide dehy 63.0 19 0.00041 34.3 6.1 56 44-99 138-211 (466)
315 PRK14618 NAD(P)H-dependent gly 63.0 8.4 0.00018 34.8 3.5 25 70-94 12-36 (328)
316 PRK11730 fadB multifunctional 62.9 16 0.00035 37.2 5.9 35 60-94 311-345 (715)
317 PRK14175 bifunctional 5,10-met 62.7 23 0.0005 32.4 6.3 55 18-95 138-192 (286)
318 COG0623 FabI Enoyl-[acyl-carri 62.5 1E+02 0.0023 27.9 10.1 38 41-94 4-41 (259)
319 PRK14188 bifunctional 5,10-met 62.5 8.5 0.00018 35.3 3.5 55 18-95 138-192 (296)
320 PRK09260 3-hydroxybutyryl-CoA 62.3 8.2 0.00018 34.3 3.3 26 69-94 8-33 (288)
321 cd02006 TPP_Gcl Thiamine pyrop 62.1 23 0.0005 29.8 5.9 71 20-98 8-88 (202)
322 KOG2304 3-hydroxyacyl-CoA dehy 62.0 6.9 0.00015 35.4 2.7 35 61-95 10-44 (298)
323 TIGR01500 sepiapter_red sepiap 61.1 10 0.00023 32.3 3.6 26 69-94 8-37 (256)
324 KOG1208 Dehydrogenases with di 61.1 18 0.00039 33.3 5.4 27 69-95 43-69 (314)
325 PRK08526 threonine dehydratase 61.0 73 0.0016 30.2 9.6 31 64-95 71-101 (403)
326 TIGR01746 Thioester-redct thio 60.9 11 0.00023 33.3 3.7 28 69-96 7-36 (367)
327 cd01078 NAD_bind_H4MPT_DH NADP 60.7 11 0.00024 31.3 3.6 36 41-94 26-61 (194)
328 PF13241 NAD_binding_7: Putati 60.7 11 0.00023 28.6 3.2 35 41-94 5-39 (103)
329 PRK08293 3-hydroxybutyryl-CoA 60.6 9.3 0.0002 34.0 3.3 26 69-94 10-35 (287)
330 TIGR00467 lysS_arch lysyl-tRNA 60.2 24 0.00051 34.9 6.3 52 44-100 18-69 (515)
331 TIGR00215 lpxB lipid-A-disacch 60.1 8.5 0.00019 35.8 3.1 38 44-96 6-43 (385)
332 COG1087 GalE UDP-glucose 4-epi 60.0 14 0.00031 34.4 4.4 33 44-94 1-33 (329)
333 COG1090 Predicted nucleoside-d 59.8 11 0.00024 34.7 3.6 28 69-96 6-33 (297)
334 cd00758 MoCF_BD MoCF_BD: molyb 59.7 12 0.00025 29.6 3.4 32 18-57 41-72 (133)
335 PRK14179 bifunctional 5,10-met 59.7 8.8 0.00019 35.1 3.0 55 18-95 138-192 (284)
336 TIGR01041 ATP_syn_B_arch ATP s 59.7 15 0.00032 35.8 4.7 59 24-94 187-246 (458)
337 PRK06444 prephenate dehydrogen 59.3 9.5 0.00021 32.8 3.0 21 69-89 8-28 (197)
338 PRK07201 short chain dehydroge 59.0 13 0.00029 36.3 4.4 27 69-95 8-36 (657)
339 cd01135 V_A-ATPase_B V/A-type 58.8 19 0.00041 32.8 5.0 44 43-94 130-174 (276)
340 PRK06522 2-dehydropantoate 2-r 58.7 10 0.00023 33.2 3.3 26 69-94 7-32 (304)
341 PRK07476 eutB threonine dehydr 58.3 40 0.00086 30.6 7.1 28 68-95 73-100 (322)
342 PRK05808 3-hydroxybutyryl-CoA 58.3 11 0.00023 33.4 3.3 26 69-94 10-35 (282)
343 PRK09417 mogA molybdenum cofac 58.1 13 0.00027 32.0 3.6 36 17-58 46-81 (193)
344 cd00640 Trp-synth-beta_II Tryp 57.9 1.2E+02 0.0026 25.9 10.4 29 68-96 56-84 (244)
345 COG0451 WcaG Nucleoside-diphos 57.4 15 0.00032 31.8 4.0 28 70-97 9-36 (314)
346 PLN02260 probable rhamnose bio 57.3 17 0.00037 36.2 4.8 35 42-94 5-41 (668)
347 CHL00059 atpA ATP synthase CF1 57.2 12 0.00026 36.7 3.7 45 42-94 197-241 (485)
348 KOG1371 UDP-glucose 4-epimeras 57.1 14 0.0003 34.7 3.9 32 43-92 2-33 (343)
349 PRK00094 gpsA NAD(P)H-dependen 57.1 13 0.00028 33.1 3.6 25 70-94 9-33 (325)
350 COG0702 Predicted nucleoside-d 56.8 13 0.00028 31.4 3.5 29 69-97 8-36 (275)
351 KOG1372 GDP-mannose 4,6 dehydr 56.8 11 0.00023 34.7 3.0 29 69-97 36-64 (376)
352 TIGR01505 tartro_sem_red 2-hyd 56.6 12 0.00026 33.2 3.3 25 70-94 7-31 (291)
353 PRK02472 murD UDP-N-acetylmura 56.3 19 0.00041 33.8 4.7 33 42-93 4-36 (447)
354 PRK14620 NAD(P)H-dependent gly 55.6 14 0.0003 33.4 3.6 25 70-94 8-32 (326)
355 TIGR01179 galE UDP-glucose-4-e 55.4 16 0.00034 31.7 3.8 25 69-93 7-31 (328)
356 PF15581 Imm35: Immunity prote 55.3 27 0.00058 26.8 4.5 44 21-73 47-90 (93)
357 PRK08229 2-dehydropantoate 2-r 55.2 12 0.00026 33.8 3.1 26 69-94 9-34 (341)
358 cd01133 F1-ATPase_beta F1 ATP 55.1 23 0.00049 32.2 4.8 61 22-94 110-171 (274)
359 PRK06035 3-hydroxyacyl-CoA deh 55.0 17 0.00038 32.2 4.1 30 65-94 6-35 (291)
360 PRK14183 bifunctional 5,10-met 54.9 80 0.0017 28.9 8.4 55 18-95 137-191 (281)
361 KOG1252 Cystathionine beta-syn 54.9 15 0.00033 34.6 3.8 36 47-92 99-134 (362)
362 COG0569 TrkA K+ transport syst 54.9 13 0.00029 32.2 3.2 27 70-96 8-34 (225)
363 cd06448 L-Ser-dehyd Serine deh 54.7 75 0.0016 28.8 8.3 28 68-95 57-84 (316)
364 smart00852 MoCF_biosynth Proba 54.4 16 0.00036 28.6 3.5 30 18-55 40-69 (135)
365 TIGR01364 serC_1 phosphoserine 54.0 23 0.0005 32.6 4.9 50 43-93 55-110 (349)
366 PRK15461 NADH-dependent gamma- 54.0 14 0.00031 33.1 3.4 26 69-94 8-33 (296)
367 PRK09281 F0F1 ATP synthase sub 53.8 20 0.00044 35.3 4.6 45 42-94 218-262 (502)
368 PRK10792 bifunctional 5,10-met 53.8 93 0.002 28.5 8.6 56 18-96 139-194 (285)
369 PRK13343 F0F1 ATP synthase sub 53.7 22 0.00047 35.1 4.8 45 42-94 218-262 (502)
370 PRK07531 bifunctional 3-hydrox 53.5 14 0.0003 35.8 3.5 26 69-94 11-36 (495)
371 TIGR01692 HIBADH 3-hydroxyisob 53.3 15 0.00033 32.6 3.4 25 70-94 4-28 (288)
372 PLN02996 fatty acyl-CoA reduct 53.1 24 0.00052 34.2 5.0 37 42-96 10-49 (491)
373 COG0707 MurG UDP-N-acetylgluco 53.0 18 0.00038 33.9 4.0 37 44-94 1-38 (357)
374 cd02010 TPP_ALS Thiamine pyrop 53.0 37 0.0008 28.1 5.5 37 61-97 38-78 (177)
375 TIGR02437 FadB fatty oxidation 52.8 16 0.00035 37.2 4.0 35 60-94 311-345 (714)
376 PRK08972 fliI flagellum-specif 52.6 19 0.00041 35.0 4.2 44 43-94 217-260 (444)
377 PRK04196 V-type ATP synthase s 52.1 27 0.00058 34.0 5.1 44 43-94 204-248 (460)
378 PRK06130 3-hydroxybutyryl-CoA 51.8 23 0.0005 31.6 4.4 27 68-94 10-36 (311)
379 PRK08268 3-hydroxy-acyl-CoA de 51.5 20 0.00044 35.0 4.3 27 68-94 13-39 (507)
380 PF01113 DapB_N: Dihydrodipico 51.5 33 0.00071 26.8 4.7 32 63-94 2-34 (124)
381 PRK08639 threonine dehydratase 51.4 1.4E+02 0.003 28.3 9.8 32 64-95 75-106 (420)
382 TIGR01124 ilvA_2Cterm threonin 51.3 1.1E+02 0.0024 29.9 9.3 79 64-155 68-146 (499)
383 COG1157 FliI Flagellar biosynt 51.2 20 0.00043 34.8 4.0 59 28-94 203-261 (441)
384 PRK07417 arogenate dehydrogena 51.0 18 0.00039 32.0 3.5 25 70-94 8-32 (279)
385 PRK08219 short chain dehydroge 50.6 17 0.00036 29.9 3.1 25 70-95 12-36 (227)
386 PLN02725 GDP-4-keto-6-deoxyman 50.2 15 0.00033 31.8 2.9 25 69-93 5-29 (306)
387 TIGR00962 atpA proton transloc 50.1 25 0.00054 34.6 4.6 44 43-94 218-261 (501)
388 PLN02260 probable rhamnose bio 50.0 24 0.00052 35.1 4.6 30 63-92 382-411 (668)
389 TIGR03324 alt_F1F0_F1_al alter 49.5 27 0.00058 34.5 4.7 44 43-94 219-262 (497)
390 KOG1207 Diacetyl reductase/L-x 49.4 30 0.00065 30.3 4.4 38 41-96 5-42 (245)
391 COG0031 CysK Cysteine synthase 49.3 17 0.00038 33.5 3.2 25 68-92 68-92 (300)
392 COG1798 DPH5 Diphthamide biosy 49.2 46 0.001 30.2 5.7 69 8-95 45-113 (260)
393 TIGR03496 FliI_clade1 flagella 48.8 29 0.00063 33.2 4.7 45 42-94 191-235 (411)
394 TIGR03253 oxalate_frc formyl-C 48.8 23 0.0005 33.6 4.0 37 55-94 2-38 (415)
395 PRK15059 tartronate semialdehy 48.7 19 0.00042 32.4 3.4 24 70-93 8-31 (292)
396 PF01266 DAO: FAD dependent ox 48.6 23 0.00049 30.9 3.7 25 70-94 7-31 (358)
397 KOG0409 Predicted dehydrogenas 48.5 18 0.00038 33.8 3.1 34 59-95 35-68 (327)
398 cd00611 PSAT_like Phosphoserin 48.1 31 0.00067 31.5 4.7 66 23-93 47-118 (355)
399 cd00886 MogA_MoaB MogA_MoaB fa 48.0 22 0.00048 28.8 3.4 35 18-58 42-76 (152)
400 PRK14176 bifunctional 5,10-met 47.8 71 0.0015 29.3 6.9 55 18-95 144-198 (287)
401 TIGR01181 dTDP_gluc_dehyt dTDP 47.7 20 0.00043 31.0 3.2 26 69-94 7-34 (317)
402 PRK14180 bifunctional 5,10-met 47.7 65 0.0014 29.4 6.6 55 18-95 138-192 (282)
403 cd02002 TPP_BFDC Thiamine pyro 47.7 69 0.0015 26.0 6.3 38 60-98 39-80 (178)
404 PRK01906 tetraacyldisaccharide 47.6 23 0.00049 33.1 3.7 34 61-94 57-95 (338)
405 TIGR00177 molyb_syn molybdenum 47.0 24 0.00052 28.3 3.4 30 18-55 49-78 (144)
406 PRK08149 ATP synthase SpaL; Va 46.9 28 0.0006 33.6 4.3 44 43-94 206-249 (428)
407 PRK06936 type III secretion sy 46.8 23 0.00049 34.4 3.7 44 43-94 217-260 (439)
408 PRK14173 bifunctional 5,10-met 46.7 1.3E+02 0.0029 27.5 8.5 56 18-96 135-190 (287)
409 PRK06249 2-dehydropantoate 2-r 46.7 23 0.00051 31.8 3.6 27 69-95 12-38 (313)
410 TIGR01136 cysKM cysteine synth 46.7 2.1E+02 0.0046 25.4 9.8 28 68-95 64-91 (299)
411 TIGR02197 heptose_epim ADP-L-g 46.6 24 0.00051 30.7 3.6 27 69-95 6-33 (314)
412 PRK09280 F0F1 ATP synthase sub 46.5 32 0.00069 33.6 4.7 60 23-94 186-246 (463)
413 PF10727 Rossmann-like: Rossma 46.5 14 0.0003 29.6 1.9 27 69-95 17-43 (127)
414 TIGR03498 FliI_clade3 flagella 46.3 28 0.00061 33.4 4.2 44 43-94 195-238 (418)
415 COG0075 Serine-pyruvate aminot 46.2 48 0.001 31.6 5.7 51 42-94 55-112 (383)
416 PRK14172 bifunctional 5,10-met 46.1 92 0.002 28.4 7.3 55 18-95 138-192 (278)
417 TIGR03305 alt_F1F0_F1_bet alte 45.9 31 0.00067 33.6 4.5 45 42-94 195-240 (449)
418 PRK11199 tyrA bifunctional cho 45.9 20 0.00044 33.5 3.1 26 69-94 106-131 (374)
419 PLN02503 fatty acyl-CoA reduct 45.8 32 0.0007 34.6 4.7 37 42-96 118-157 (605)
420 PRK13512 coenzyme A disulfide 45.7 59 0.0013 30.6 6.3 29 71-99 157-185 (438)
421 PF02606 LpxK: Tetraacyldisacc 45.7 22 0.00048 32.8 3.4 34 61-94 36-74 (326)
422 TIGR00873 gnd 6-phosphoglucona 45.4 21 0.00046 34.6 3.3 25 70-94 7-31 (467)
423 PRK07594 type III secretion sy 45.3 32 0.00069 33.3 4.4 27 68-94 227-253 (433)
424 PRK14177 bifunctional 5,10-met 45.2 1.1E+02 0.0024 28.0 7.7 56 18-96 139-194 (284)
425 PRK00025 lpxB lipid-A-disaccha 45.2 19 0.00041 32.5 2.8 34 44-92 2-35 (380)
426 PRK03525 crotonobetainyl-CoA:c 45.2 29 0.00063 32.9 4.1 37 56-95 11-47 (405)
427 PRK14170 bifunctional 5,10-met 45.0 1.5E+02 0.0032 27.1 8.5 55 18-95 137-191 (284)
428 PRK14982 acyl-ACP reductase; P 44.9 38 0.00082 31.7 4.8 35 41-93 153-189 (340)
429 PRK12921 2-dehydropantoate 2-r 44.8 23 0.0005 31.2 3.2 25 69-93 7-31 (305)
430 PRK08246 threonine dehydratase 44.7 1.6E+02 0.0036 26.5 8.8 32 64-95 70-101 (310)
431 PRK05922 type III secretion sy 44.6 22 0.00047 34.5 3.2 44 43-94 212-255 (434)
432 PRK09599 6-phosphogluconate de 44.1 26 0.00057 31.3 3.5 26 69-94 7-32 (301)
433 PRK11259 solA N-methyltryptoph 44.0 26 0.00056 31.5 3.5 25 70-94 11-35 (376)
434 PRK11430 putative CoA-transfer 43.9 32 0.00068 32.4 4.1 37 56-95 9-45 (381)
435 TIGR00682 lpxK tetraacyldisacc 43.9 30 0.00065 31.8 3.9 34 61-94 29-67 (311)
436 TIGR00872 gnd_rel 6-phosphoglu 43.6 27 0.00058 31.3 3.5 25 70-94 8-32 (298)
437 cd01561 CBS_like CBS_like: Thi 43.5 2.3E+02 0.005 25.0 9.6 28 68-95 59-86 (291)
438 PRK11154 fadJ multifunctional 43.2 49 0.0011 33.7 5.6 33 61-93 308-341 (708)
439 PF00006 ATP-synt_ab: ATP synt 43.2 27 0.00059 30.4 3.3 61 22-94 53-113 (215)
440 PRK14171 bifunctional 5,10-met 43.0 1.1E+02 0.0023 28.2 7.3 56 18-96 139-194 (288)
441 PRK14166 bifunctional 5,10-met 42.7 84 0.0018 28.7 6.5 55 18-95 137-191 (282)
442 PRK14186 bifunctional 5,10-met 42.6 1.8E+02 0.0038 26.8 8.6 56 18-96 138-193 (297)
443 TIGR02441 fa_ox_alpha_mit fatt 42.5 29 0.00062 35.7 3.9 34 61-94 334-367 (737)
444 PF13579 Glyco_trans_4_4: Glyc 42.4 33 0.00071 25.7 3.4 25 71-95 4-28 (160)
445 COG0521 MoaB Molybdopterin bio 42.3 31 0.00067 29.3 3.4 34 18-58 49-82 (169)
446 PRK08927 fliI flagellum-specif 42.3 29 0.00063 33.7 3.7 44 43-94 213-256 (442)
447 cd02003 TPP_IolD Thiamine pyro 42.1 81 0.0018 26.6 6.1 39 60-98 37-79 (205)
448 cd01136 ATPase_flagellum-secre 42.1 23 0.00049 33.0 2.8 44 43-94 124-167 (326)
449 PRK14169 bifunctional 5,10-met 42.1 1.2E+02 0.0025 27.8 7.4 55 18-95 136-190 (282)
450 PRK11559 garR tartronate semia 41.8 29 0.00062 30.7 3.4 25 70-94 10-34 (296)
451 TIGR02440 FadJ fatty oxidation 41.6 25 0.00054 35.7 3.3 33 61-93 303-336 (699)
452 PLN02516 methylenetetrahydrofo 41.6 1.2E+02 0.0025 28.1 7.3 55 18-95 147-201 (299)
453 PRK14994 SAM-dependent 16S rib 41.6 63 0.0014 29.4 5.6 30 68-97 96-125 (287)
454 cd01080 NAD_bind_m-THF_DH_Cycl 41.4 33 0.00071 28.7 3.4 53 19-95 25-78 (168)
455 cd02013 TPP_Xsc_like Thiamine 41.4 57 0.0012 27.4 5.0 68 21-97 5-83 (196)
456 PTZ00142 6-phosphogluconate de 41.2 28 0.0006 33.9 3.4 26 70-95 9-34 (470)
457 PF13450 NAD_binding_8: NAD(P) 41.1 54 0.0012 22.9 4.1 27 70-96 4-30 (68)
458 COG2084 MmsB 3-hydroxyisobutyr 40.9 29 0.00064 31.7 3.3 27 70-96 8-34 (286)
459 PLN02556 cysteine synthase/L-3 40.9 40 0.00087 31.6 4.3 31 63-94 113-143 (368)
460 PRK14187 bifunctional 5,10-met 40.9 1.2E+02 0.0026 27.9 7.3 56 18-96 140-195 (294)
461 PRK14182 bifunctional 5,10-met 40.8 2.1E+02 0.0044 26.2 8.7 55 18-95 137-191 (282)
462 TIGR01138 cysM cysteine syntha 40.8 35 0.00075 30.6 3.8 28 68-95 65-92 (290)
463 PRK08309 short chain dehydroge 40.7 44 0.00096 27.9 4.1 22 73-94 11-32 (177)
464 COG2894 MinD Septum formation 40.6 36 0.00079 30.7 3.7 41 43-96 2-42 (272)
465 PRK05638 threonine synthase; V 40.6 32 0.00069 32.8 3.7 28 68-95 118-145 (442)
466 PRK00711 D-amino acid dehydrog 40.3 32 0.00069 31.5 3.5 25 70-94 8-32 (416)
467 TIGR01039 atpD ATP synthase, F 40.3 45 0.00098 32.6 4.6 44 43-94 201-245 (461)
468 PRK06456 acetolactate synthase 40.1 63 0.0014 31.6 5.7 53 45-98 389-452 (572)
469 PLN02550 threonine dehydratase 40.1 2.3E+02 0.0051 28.6 9.7 28 68-95 163-190 (591)
470 TIGR01377 soxA_mon sarcosine o 40.0 30 0.00065 31.1 3.2 25 70-94 8-32 (380)
471 TIGR03026 NDP-sugDHase nucleot 39.7 31 0.00067 32.4 3.4 26 69-94 7-32 (411)
472 cd00885 cinA Competence-damage 39.6 37 0.00079 28.3 3.5 33 18-58 41-73 (170)
473 PRK12490 6-phosphogluconate de 39.3 35 0.00075 30.6 3.5 25 70-94 8-32 (299)
474 PRK08617 acetolactate synthase 39.2 73 0.0016 31.0 6.0 38 61-98 404-445 (552)
475 COG0529 CysC Adenylylsulfate k 39.0 1.1E+02 0.0023 26.7 6.2 23 73-95 39-61 (197)
476 PRK05688 fliI flagellum-specif 38.8 45 0.00097 32.5 4.4 45 42-94 222-266 (451)
477 PRK06820 type III secretion sy 38.6 51 0.0011 32.0 4.7 45 42-94 217-261 (440)
478 PRK06851 hypothetical protein; 38.4 1.6E+02 0.0035 27.8 8.0 87 6-94 149-251 (367)
479 PRK12483 threonine dehydratase 38.4 2.4E+02 0.0052 27.9 9.4 28 68-95 91-118 (521)
480 PRK09099 type III secretion sy 38.1 57 0.0012 31.7 4.9 44 43-94 218-261 (441)
481 COG3320 Putative dehydrogenase 38.0 1.4E+02 0.003 28.7 7.3 28 69-96 8-36 (382)
482 PRK12409 D-amino acid dehydrog 38.0 36 0.00078 31.3 3.5 25 70-94 9-33 (410)
483 PRK03604 moaC bifunctional mol 37.9 36 0.00077 31.5 3.4 34 18-58 197-230 (312)
484 TIGR03364 HpnW_proposed FAD de 37.9 38 0.00082 30.5 3.6 25 70-94 8-32 (365)
485 COG0446 HcaD Uncharacterized N 37.7 38 0.00083 30.3 3.6 33 67-99 141-173 (415)
486 PRK05398 formyl-coenzyme A tra 37.7 40 0.00088 32.0 3.9 36 56-94 4-39 (416)
487 PLN02616 tetrahydrofolate dehy 37.6 1.3E+02 0.0028 28.6 7.1 56 18-96 211-266 (364)
488 PRK14189 bifunctional 5,10-met 37.6 1.6E+02 0.0034 27.0 7.5 56 18-96 138-193 (285)
489 cd02015 TPP_AHAS Thiamine pyro 37.6 93 0.002 25.7 5.6 68 23-98 4-81 (186)
490 KOG1210 Predicted 3-ketosphing 37.6 35 0.00077 31.9 3.3 36 43-96 33-68 (331)
491 PLN02350 phosphogluconate dehy 37.5 31 0.00067 33.8 3.1 25 70-94 14-38 (493)
492 PRK08329 threonine synthase; V 37.3 39 0.00085 31.1 3.6 30 65-94 107-136 (347)
493 PRK11761 cysM cysteine synthas 37.2 40 0.00086 30.4 3.6 28 68-95 69-96 (296)
494 TIGR02079 THD1 threonine dehyd 37.0 3.7E+02 0.008 25.4 10.5 30 66-95 68-97 (409)
495 PRK08655 prephenate dehydrogen 36.8 39 0.00085 32.3 3.6 26 69-94 8-33 (437)
496 PRK14190 bifunctional 5,10-met 36.8 2.5E+02 0.0054 25.7 8.6 55 18-95 138-192 (284)
497 TIGR01026 fliI_yscN ATPase Fli 36.8 43 0.00092 32.4 3.9 43 44-94 219-261 (440)
498 PRK08197 threonine synthase; V 36.8 40 0.00087 31.6 3.6 31 65-95 130-160 (394)
499 COG1663 LpxK Tetraacyldisaccha 36.7 37 0.00081 31.9 3.3 34 61-94 48-86 (336)
500 cd03522 MoeA_like MoeA_like. T 36.6 80 0.0017 29.1 5.5 34 18-58 201-234 (312)
No 1
>KOG2728 consensus Uncharacterized conserved protein with similarity to phosphopantothenoylcysteine synthetase/decarboxylase [General function prediction only]
Probab=100.00 E-value=3.6e-60 Score=414.04 Aligned_cols=209 Identities=39% Similarity=0.553 Sum_probs=186.9
Q ss_pred hhccCCCCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEE
Q 027330 12 FFDSAPPLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFL 91 (225)
Q Consensus 12 ff~~~~~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l 91 (225)
||+.+|+|+++++....+++|+.++... +.+++|+||||||+||||+|+||||||||+|+||+++||+|++.||+|||+
T Consensus 1 ~~~~~p~p~~~~d~~s~~~eFi~~q~s~-~~rrIVlVTSGGTtVPLE~ntVRFiDNFSaGtRGAaSAE~Fl~agYaVIFl 79 (302)
T KOG2728|consen 1 FFEMNPVPESLDDPGSLIEEFIKLQASL-QGRRIVLVTSGGTTVPLEQNTVRFIDNFSAGTRGAASAEYFLAAGYAVIFL 79 (302)
T ss_pred CCCcCCCcccccchhHHHHHHHHHHhhc-cCceEEEEecCCeEeecccCceEeeeccCcCCccchhHHHHHhCCceEEEE
Confidence 7999999999999999999999987542 356699999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCccCCCCcccchhhhcccCCc---eEeeCcchHHHHHHHHHHHHHhhcCcccccccccHHHHHHHHHHHHHH
Q 027330 92 YRRGTCEPYCSSLPDDAFLECFEVTEESA---VQVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVS 168 (225)
Q Consensus 92 ~r~~s~~P~~~~l~~~~~~~~l~~~~~~~---i~v~~~~~~~~~~a~~~~~~~~~~~~ll~i~F~t~~eYl~~L~~i~~~ 168 (225)
||..|+.||+|++|.+.+..+++..+... |...+...+.+.++++.|+..-..++|+.+||||+.|||++|++||++
T Consensus 80 ~R~~Sl~Py~R~f~~~~~~~~l~~~g~~~~~~i~~~e~~~~vf~~~~~~~k~~~k~~~lL~vpFtT~~~Yl~~L~aiae~ 159 (302)
T KOG2728|consen 80 YRERSLFPYTRHFPGQTWFLFLRPSGSALSGLIEKEENALPVFAEALEKYKYAEKAGTLLYVPFTTLADYLWLLRAIAEA 159 (302)
T ss_pred eeccccccccccCCCchhhhhhccCCcccccceecCchhhHHHHHHHHHHHHHHhhCcEEEEecchHHHHHHHHHHHHHH
Confidence 99999999999999888888888765321 333333344466677777776678999999999999999999999999
Q ss_pred hhccCCcceEEEeecccCccCCCCCcCCCccccCCCceeEEEeeChhHhhccc
Q 027330 169 SRSLGPCSMFYLAAAVSDFYVPWKSMVTIHESILHTCSSFVLLRLHFMLGKGR 221 (225)
Q Consensus 169 l~~~~~~~~~~lAAAVSDf~vp~~~~~e~KI~s~~~~~~l~L~~~p~il~~~~ 221 (225)
|++++++.|+|+||||||||||++.|++|||.|+++.+.|+|...||+|..+.
T Consensus 160 Ln~~~sramfYLAAAVSDFyVP~~~mpeHKIqSg~~~l~i~l~~VPK~L~~Lv 212 (302)
T KOG2728|consen 160 LNPLGSRAMFYLAAAVSDFYVPESEMPEHKIQSGSGPLQITLKPVPKMLSPLV 212 (302)
T ss_pred hccccchHHHHHHHHhcccccChhhcchhhcccCCCCceEEeccchHHHHHHH
Confidence 99999999999999999999999999999999998999999999999998654
No 2
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=100.00 E-value=1.3e-38 Score=270.29 Aligned_cols=127 Identities=24% Similarity=0.228 Sum_probs=88.5
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecCCCCCCccCCCCcccchhhhcccCCc
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESA 120 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s~~P~~~~l~~~~~~~~l~~~~~~~ 120 (225)
++||+||||||||.|||| |||||||+|||+||++||++|+.+||+|++|||+.++.|. ..+
T Consensus 1 l~gk~vlITaG~T~E~iD--~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~p-------~~~---------- 61 (185)
T PF04127_consen 1 LKGKKVLITAGPTREPID--PVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPPP-------PGV---------- 61 (185)
T ss_dssp -TT-EEEEEESB-EEESS--SSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS-----------TTE----------
T ss_pred CCCCEEEEECCCccccCC--CceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcccccc-------ccc----------
Confidence 379999999999999999 9999999999999999999999999999999999775432 111
Q ss_pred eEeeCcchHHHHHHHHHHHHHhhcCcccccccccHHHHHHHHHHHHHHhhccCCcceEEEeecccCccCCCCCcCCCccc
Q 027330 121 VQVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMVTIHES 200 (225)
Q Consensus 121 i~v~~~~~~~~~~a~~~~~~~~~~~~ll~i~F~t~~eYl~~L~~i~~~l~~~~~~~~~~lAAAVSDf~vp~~~~~e~KI~ 200 (225)
-.+.++|..||+..++. .++.+|++|||||||||++ +...++|||
T Consensus 62 ---------------------------~~i~v~sa~em~~~~~~------~~~~~Di~I~aAAVsDf~p--~~~~~~KIk 106 (185)
T PF04127_consen 62 ---------------------------KVIRVESAEEMLEAVKE------LLPSADIIIMAAAVSDFRP--EEPAEGKIK 106 (185)
T ss_dssp ---------------------------EEEE-SSHHHHHHHHHH------HGGGGSEEEE-SB--SEEE--SCHHSS-G-
T ss_pred ---------------------------eEEEecchhhhhhhhcc------ccCcceeEEEecchhheee--hhccccccc
Confidence 12344555555544442 2355799999999999996 667899999
Q ss_pred c-CCCceeEEEeeChhHhhccc
Q 027330 201 I-LHTCSSFVLLRLHFMLGKGR 221 (225)
Q Consensus 201 s-~~~~~~l~L~~~p~il~~~~ 221 (225)
| ..+.++|+|++|||||+.++
T Consensus 107 K~~~~~l~l~L~~~pkIL~~l~ 128 (185)
T PF04127_consen 107 KSSGDELTLELKPTPKILAELR 128 (185)
T ss_dssp --TT-CEEEEEEE-GGHGCCHH
T ss_pred cccCcceEEEEEeChHHHHHHH
Confidence 7 45679999999999999994
No 3
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=100.00 E-value=9.1e-35 Score=276.46 Aligned_cols=148 Identities=20% Similarity=0.175 Sum_probs=117.4
Q ss_pred CCCCHHHHHHHHHHHHhhC--CCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 18 PLNDRAAISQKLKEFIALN--SSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 18 ~~~~~~~i~~~l~~f~~~~--~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
+-.++++|...+..++... .+ ++||+||||+|||.|||| |||||+|+|||+||++||++++.+|++|++|+|+.
T Consensus 231 rm~e~~~I~~~v~~~~~~~~~~~--l~gkkvLITaGpT~E~ID--pVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 231 RMAEPLEIAAAAEALLRPPQPKP--LAGRRVLITAGPTHEPID--PVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CCCCHHHHHHHHHHHHhhccccc--cCCCEEEEecCCccccCC--cceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 4448999999999988643 33 599999999999999999 99999999999999999999999999999999998
Q ss_pred CCCCCccCCCCcccchhhhcccCCceEeeCcchHHHHHHHHHHHHHhhcCcccccccccHHHHHHHHHHHHHHhhccCCc
Q 027330 96 TCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPC 175 (225)
Q Consensus 96 s~~P~~~~l~~~~~~~~l~~~~~~~i~v~~~~~~~~~~a~~~~~~~~~~~~ll~i~F~t~~eYl~~L~~i~~~l~~~~~~ 175 (225)
++.|+ ..++ .+.|+ ++.+|.+++ + +.++ .
T Consensus 307 ~~~~p-------~~v~--------~i~V~--ta~eM~~av---------------------------~------~~~~-~ 335 (475)
T PRK13982 307 DLADP-------QGVK--------VIHVE--SARQMLAAV---------------------------E------AALP-A 335 (475)
T ss_pred CCCCC-------CCce--------EEEec--CHHHHHHHH---------------------------H------hhCC-C
Confidence 86432 1111 13331 344444443 2 1123 6
Q ss_pred ceEEEeecccCccCCCCCcCCCccccCC-CceeEEEeeChhHhhcccc
Q 027330 176 SMFYLAAAVSDFYVPWKSMVTIHESILH-TCSSFVLLRLHFMLGKGRS 222 (225)
Q Consensus 176 ~~~~lAAAVSDf~vp~~~~~e~KI~s~~-~~~~l~L~~~p~il~~~~~ 222 (225)
|++|||||||||++ .+..++||||++ +.++|+|++|||||++++.
T Consensus 336 Di~I~aAAVaDyrp--~~~~~~KiKk~~~~~~~L~L~~nPDIL~~l~~ 381 (475)
T PRK13982 336 DIAIFAAAVADWRV--ATEGGQKLKKGAAGPPPLQLVENPDILATISK 381 (475)
T ss_pred CEEEEeccccceee--ccccccccCcCCCCCceeeeeeCcHHHHHHhh
Confidence 99999999999996 556899999864 4478999999999998874
No 4
>PRK09620 hypothetical protein; Provisional
Probab=100.00 E-value=9.3e-33 Score=241.18 Aligned_cols=132 Identities=23% Similarity=0.228 Sum_probs=99.7
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecCCCCCCccCCCCcccchhhhcccCCce
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAV 121 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s~~P~~~~l~~~~~~~~l~~~~~~~i 121 (225)
.||+||||||||.|+|| |||||||+|||.||.++|++|+++||+|++|+|+.+..|.. ++.
T Consensus 2 ~gk~vlITaG~T~E~iD--~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~~--~~~--------------- 62 (229)
T PRK09620 2 KGKKVLITSGGCLEKWD--QVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPND--INN--------------- 62 (229)
T ss_pred CCCEEEEeCCCccCCcC--CeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCcc--cCC---------------
Confidence 68999999999999999 99999999999999999999999999999999987643321 110
Q ss_pred EeeCcchHHHHHHHHHHHHHhhcCcccccccccHHHHHHHHHHHHHHhhccCCcceEEEeecccCccCCCCCcC------
Q 027330 122 QVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMV------ 195 (225)
Q Consensus 122 ~v~~~~~~~~~~a~~~~~~~~~~~~ll~i~F~t~~eYl~~L~~i~~~l~~~~~~~~~~lAAAVSDf~vp~~~~~------ 195 (225)
.+..+++++..|+...++.+ ++. ...|++||+||||||+++ ...
T Consensus 63 ------------------------~~~~~~V~s~~d~~~~l~~~---~~~-~~~D~VIH~AAvsD~~~~--~~~~~~~~~ 112 (229)
T PRK09620 63 ------------------------QLELHPFEGIIDLQDKMKSI---ITH-EKVDAVIMAAAGSDWVVD--KICDQEGNV 112 (229)
T ss_pred ------------------------ceeEEEEecHHHHHHHHHHH---hcc-cCCCEEEECccccceecc--ccccccccc
Confidence 01122344445554433332 221 246999999999999964 222
Q ss_pred ---CCccccCCCceeEEEeeChhHhhccccc
Q 027330 196 ---TIHESILHTCSSFVLLRLHFMLGKGRSF 223 (225)
Q Consensus 196 ---e~KI~s~~~~~~l~L~~~p~il~~~~~~ 223 (225)
++||||+ +.++|+|++|||||++++.+
T Consensus 113 ~~~~~Ki~~~-~~~~l~L~~~pdIl~~l~~~ 142 (229)
T PRK09620 113 LDMNGKISSD-IAPIIHFQKAPKVLKQIKQW 142 (229)
T ss_pred ccccCCCcCC-CCCeEEEEECcHHHHHHHhh
Confidence 2489885 45899999999999998764
No 5
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=99.97 E-value=2.3e-31 Score=248.95 Aligned_cols=150 Identities=19% Similarity=0.187 Sum_probs=119.7
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 17 PPLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 17 ~~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
-+..++++|...+.+.+... + .+||+||||+|||.|||| |||||||+|||+||.++|++|+++||+|++++|+.+
T Consensus 165 gr~~~~~~I~~~~~~~~~~~-~--l~gk~vlITgG~T~E~ID--~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~ 239 (399)
T PRK05579 165 GRMAEPEEIVAAAERALSPK-D--LAGKRVLITAGPTREPID--PVRYITNRSSGKMGYALARAAARRGADVTLVSGPVN 239 (399)
T ss_pred CCCCCHHHHHHHHHHHhhhc-c--cCCCEEEEeCCCcccccc--ceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCcc
Confidence 35568999999999988543 3 589999999999999999 999999999999999999999999999999999875
Q ss_pred CCCCccCCCCcccchhhhcccCCceEeeCcchHHHHHHHHHHHHHhhcCcccccccccHHHHHHHHHHHHHHhhccCCcc
Q 027330 97 CEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCS 176 (225)
Q Consensus 97 ~~P~~~~l~~~~~~~~l~~~~~~~i~v~~~~~~~~~~a~~~~~~~~~~~~ll~i~F~t~~eYl~~L~~i~~~l~~~~~~~ 176 (225)
..+.. .. ..++++|..||...++ +.++..|
T Consensus 240 ~~~~~-------~~-------------------------------------~~~dv~~~~~~~~~v~------~~~~~~D 269 (399)
T PRK05579 240 LPTPA-------GV-------------------------------------KRIDVESAQEMLDAVL------AALPQAD 269 (399)
T ss_pred ccCCC-------Cc-------------------------------------EEEccCCHHHHHHHHH------HhcCCCC
Confidence 43210 00 1123344444433333 2356789
Q ss_pred eEEEeecccCccCCCCCcCCCccccCCCceeEEEeeChhHhhccccc
Q 027330 177 MFYLAAAVSDFYVPWKSMVTIHESILHTCSSFVLLRLHFMLGKGRSF 223 (225)
Q Consensus 177 ~~~lAAAVSDf~vp~~~~~e~KI~s~~~~~~l~L~~~p~il~~~~~~ 223 (225)
+++++|||+||++ ....++||||+.+.++|+|++|||||++++..
T Consensus 270 ilI~~Aav~d~~~--~~~~~~Kikk~~~~~~l~L~~~pdIl~~l~~~ 314 (399)
T PRK05579 270 IFIMAAAVADYRP--ATVAEGKIKKGEGELTLELVPNPDILAEVAAL 314 (399)
T ss_pred EEEEccccccccc--ccccccCccCCCCCceEEEEeCcHHHHHHHhc
Confidence 9999999999995 66789999997656899999999999998753
No 6
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=99.97 E-value=1.1e-30 Score=243.77 Aligned_cols=152 Identities=22% Similarity=0.188 Sum_probs=118.5
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 17 PPLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 17 ~~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
-++.++++|...+.+.+....+ +.||+||||+|||.|||| |||||||+|||+||.++|++|+.+||+|+++||+.+
T Consensus 161 g~~~~~~~i~~~v~~~~~~~~~--~~~~~vlit~g~t~E~iD--~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~ 236 (390)
T TIGR00521 161 GRLAEPETIVKAAEREFSPKED--LEGKRVLITAGPTREPID--PVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVS 236 (390)
T ss_pred CCCCCHHHHHHHHHHHHhhccc--cCCceEEEecCCccCCCC--ceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCc
Confidence 4566899999999998865333 589999999999999999 999999999999999999999999999999999986
Q ss_pred CCCCccCCCCcccchhhhcccCCceEeeCcchHHHHHHHHHHHHHhhcCcccccccccHHHHHHHHHHHHHHhhccCCcc
Q 027330 97 CEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCS 176 (225)
Q Consensus 97 ~~P~~~~l~~~~~~~~l~~~~~~~i~v~~~~~~~~~~a~~~~~~~~~~~~ll~i~F~t~~eYl~~L~~i~~~l~~~~~~~ 176 (225)
..|.. ... .++++|..||+..+. + +.++..|
T Consensus 237 ~~~~~-------~~~-------------------------------------~~~v~~~~~~~~~~~---~--~~~~~~D 267 (390)
T TIGR00521 237 LLTPP-------GVK-------------------------------------SIKVSTAEEMLEAAL---N--ELAKDFD 267 (390)
T ss_pred cCCCC-------CcE-------------------------------------EEEeccHHHHHHHHH---H--hhcccCC
Confidence 53321 011 112233333322111 0 1235689
Q ss_pred eEEEeecccCccCCCCCcCCCccccCCCceeEEEeeChhHhhccccc
Q 027330 177 MFYLAAAVSDFYVPWKSMVTIHESILHTCSSFVLLRLHFMLGKGRSF 223 (225)
Q Consensus 177 ~~~lAAAVSDf~vp~~~~~e~KI~s~~~~~~l~L~~~p~il~~~~~~ 223 (225)
++++|||||||++ ....++||||..+.++|+|++|||||.+++..
T Consensus 268 ~~i~~Aavsd~~~--~~~~~~Ki~~~~~~~~l~L~~~pdil~~l~~~ 312 (390)
T TIGR00521 268 IFISAAAVADFKP--KTVFEGKIKKQGEELSLKLVKNPDIIAEVRKI 312 (390)
T ss_pred EEEEccccccccc--cccccccccccCCceeEEEEeCcHHHHHHHhh
Confidence 9999999999996 34678999996566899999999999998864
No 7
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=99.96 E-value=6.2e-30 Score=222.91 Aligned_cols=129 Identities=19% Similarity=0.246 Sum_probs=96.4
Q ss_pred ceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecCCCCCCccCCCCcccchhhhcccCCceEe
Q 027330 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQV 123 (225)
Q Consensus 44 ~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s~~P~~~~l~~~~~~~~l~~~~~~~i~v 123 (225)
++||||||||+|||| |||||||+|||++|.++|++|+++||.|++++|+....|.. + ..++. +.+
T Consensus 1 ~~vliT~G~T~e~iD--~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~~~~~~~~---~--~~v~~--------i~v 65 (229)
T PRK06732 1 MKILITSGGTTEPID--SVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTKTAVKPEP---H--PNLSI--------IEI 65 (229)
T ss_pred CEEEEcCCCcccccC--CceeecCccchHHHHHHHHHHHhCCCEEEEEECcccccCCC---C--CCeEE--------EEE
Confidence 589999999999999 99999999999999999999999999999999876544421 0 00111 111
Q ss_pred eCcchHHHHHHHHHHHHHhhcCcccccccccHHHHHHHHHHHHHHhhccCCcceEEEeecccCccCCCCC----------
Q 027330 124 CQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKS---------- 193 (225)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~ll~i~F~t~~eYl~~L~~i~~~l~~~~~~~~~~lAAAVSDf~vp~~~---------- 193 (225)
....+|.+.+ + +.++..|+++|+|||+||.+ ...
T Consensus 66 --~s~~~m~~~l---------------------------~------~~~~~~DivIh~AAvsd~~~-~~~~~~~~~~~~~ 109 (229)
T PRK06732 66 --ENVDDLLETL---------------------------E------PLVKDHDVLIHSMAVSDYTP-VYMTDLEEVSASD 109 (229)
T ss_pred --ecHHHHHHHH---------------------------H------HHhcCCCEEEeCCccCCcee-hhhhhhhhhhhhh
Confidence 1222222222 1 12345799999999999874 221
Q ss_pred ---------cCCCccccCCCceeEEEeeChhHhhccccc
Q 027330 194 ---------MVTIHESILHTCSSFVLLRLHFMLGKGRSF 223 (225)
Q Consensus 194 ---------~~e~KI~s~~~~~~l~L~~~p~il~~~~~~ 223 (225)
++++||||+.+.++|+|++|||||++++..
T Consensus 110 ~v~~~~~~~~~~~Ki~~~~~~~~l~l~~~p~il~~~~~~ 148 (229)
T PRK06732 110 NLNEFLTKQNTEAKISSASDYQVLFLKKTPKVISYVKKW 148 (229)
T ss_pred hhhhhhccccccCCccCCCCceEEEEEEChHHHHHHHhh
Confidence 258999998767899999999999998864
No 8
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=99.95 E-value=2.7e-28 Score=212.33 Aligned_cols=128 Identities=23% Similarity=0.261 Sum_probs=95.3
Q ss_pred eEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecCCCCCCccCCCCcccchhhhcccCCceEee
Q 027330 45 VACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVC 124 (225)
Q Consensus 45 ~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s~~P~~~~l~~~~~~~~l~~~~~~~i~v~ 124 (225)
+||||||||.|||| |||||||+|||.+|.++|++|+++||.|++++++.++.|.. .+ ..| +.
T Consensus 1 ~vliT~G~T~e~iD--~VR~itN~SSGgIG~AIA~~la~~Ga~Vvlv~~~~~l~~~~-~~----~~D-----------v~ 62 (227)
T TIGR02114 1 KILVTSGGTSEPID--SVRSITNHSTGHLGKIITETFLSAGHEVTLVTTKRALKPEP-HP----NLS-----------IR 62 (227)
T ss_pred CEEEccCCccCCCC--CceeecCCcccHHHHHHHHHHHHCCCEEEEEcChhhccccc-CC----cce-----------ee
Confidence 58999999999999 99999999999999999999999999999998765443311 00 011 10
Q ss_pred CcchHHHHHHHHHHHHHhhcCcccccccccHHHHHHHHHHHHHHhhccCCcceEEEeecccCccCCCCCc----------
Q 027330 125 QPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSM---------- 194 (225)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~ll~i~F~t~~eYl~~L~~i~~~l~~~~~~~~~~lAAAVSDf~vp~~~~---------- 194 (225)
.. +++.++ ++ ...+.++..|+++++||++||. |...+
T Consensus 63 --d~------------------------~s~~~l---~~---~v~~~~g~iDiLVnnAgv~d~~-~~~~~s~e~~~~~~~ 109 (227)
T TIGR02114 63 --EI------------------------ETTKDL---LI---TLKELVQEHDILIHSMAVSDYT-PVYMTDLEQVQASDN 109 (227)
T ss_pred --cH------------------------HHHHHH---HH---HHHHHcCCCCEEEECCEecccc-chhhCCHHHHhhhcc
Confidence 00 111111 11 1233457789999999999997 43443
Q ss_pred ---------CCCccccCCCceeEEEeeChhHhhccccc
Q 027330 195 ---------VTIHESILHTCSSFVLLRLHFMLGKGRSF 223 (225)
Q Consensus 195 ---------~e~KI~s~~~~~~l~L~~~p~il~~~~~~ 223 (225)
.++||||+.+.++|+|++|||||++++..
T Consensus 110 ~~~~~~~~~~~~Ki~~~~~~~~l~l~~~p~il~~~~~~ 147 (227)
T TIGR02114 110 LNEFLSKQNHEAKISSTSEYQVLFLKKTPKVISLVKEW 147 (227)
T ss_pred hhhhhccccccCCcccCCCceeEEEEEChHHHHHHHhh
Confidence 37999998767899999999999998764
No 9
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=99.93 E-value=2.4e-25 Score=208.04 Aligned_cols=149 Identities=21% Similarity=0.170 Sum_probs=120.4
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecCCC
Q 027330 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTC 97 (225)
Q Consensus 18 ~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s~ 97 (225)
+-.++++|+..+.+++... + ++|++||||+|||.|+|| +||||+|+|||+||.++|++++.+|+.|+++++++++
T Consensus 161 ~~~e~~~Iv~~~~~~~~~~-~--l~gk~Vlit~G~t~E~id--pvr~itn~ssGk~g~alA~a~~~~GA~V~lv~g~~~~ 235 (392)
T COG0452 161 RLAEPEEIVEAALALLKTP-D--LKGKKVLITAGPTREYID--PVRFISNRSSGKMGFALAAAAKRRGASVTLVSGPTSL 235 (392)
T ss_pred cCCCHHHHHHHHHhhcccc-c--ccCcEEEecCCCCccCCc--cceeeeccccccccHHHHHHHHHcCCceEEecCCCcC
Confidence 4447899999999888765 3 599999999999999999 9999999999999999999999999999999998776
Q ss_pred CCCccCCCCcccchhhhcccCCceEeeCcchHHHHHHHHHHHHHhhcCcccccccccHHHHHHHHHHHHHHhhccCCcce
Q 027330 98 EPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSM 177 (225)
Q Consensus 98 ~P~~~~l~~~~~~~~l~~~~~~~i~v~~~~~~~~~~a~~~~~~~~~~~~ll~i~F~t~~eYl~~L~~i~~~l~~~~~~~~ 177 (225)
.+. .+.+ .+.+ .++.+|.+++ ++.....|+
T Consensus 236 ~~p-------~~v~--------~v~v--~sa~em~~av---------------------------------~~~~~~~d~ 265 (392)
T COG0452 236 KIP-------AGVE--------VVKV--ESAEEMLNAV---------------------------------LEAALPADI 265 (392)
T ss_pred CCC-------Ccce--------eeee--eeHHHHHHHH---------------------------------HhcccccCE
Confidence 442 1111 1233 2445555444 222356899
Q ss_pred EEEeecccCccCCCCCcCCCccccCCCceeEEEeeChhHhhccccc
Q 027330 178 FYLAAAVSDFYVPWKSMVTIHESILHTCSSFVLLRLHFMLGKGRSF 223 (225)
Q Consensus 178 ~~lAAAVSDf~vp~~~~~e~KI~s~~~~~~l~L~~~p~il~~~~~~ 223 (225)
++++|||+||++ +..+++||+|+.+.+.|+|.+|||||.+++..
T Consensus 266 ~i~~aAvaD~~~--~~~~~~Kikk~~~~~~l~l~~n~dil~~~~~~ 309 (392)
T COG0452 266 FISAAAVADYRP--KWVAEAKIKKQGEPFKLELVPNPDILASVARD 309 (392)
T ss_pred EEEecccccccc--ccccccceeecCCcceEEeccChhHHHHHHhh
Confidence 999999999996 56789999997777999999999999988753
No 10
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.80 E-value=0.016 Score=50.24 Aligned_cols=37 Identities=8% Similarity=0.024 Sum_probs=31.6
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCcc-chhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSS-GHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSS-G~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.+||++|||.| |+ +..|.++|+.|++.|+.|+++.|.
T Consensus 8 ~~~k~~lItGa-----------------s~g~GIG~a~a~~la~~G~~v~l~~r~ 45 (258)
T PRK07533 8 LAGKRGLVVGI-----------------ANEQSIAWGCARAFRALGAELAVTYLN 45 (258)
T ss_pred cCCCEEEEECC-----------------CCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 47899999987 44 478999999999999999888764
No 11
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=96.67 E-value=0.021 Score=49.56 Aligned_cols=38 Identities=18% Similarity=0.050 Sum_probs=30.9
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..||+++||.|+ +++..|.++|+.|++.|+.|++.++.
T Consensus 4 l~~k~~lItGas----------------~~~GIG~aia~~la~~G~~v~~~~~~ 41 (258)
T PRK07370 4 LTGKKALVTGIA----------------NNRSIAWGIAQQLHAAGAELGITYLP 41 (258)
T ss_pred cCCcEEEEeCCC----------------CCCchHHHHHHHHHHCCCEEEEEecC
Confidence 368899999874 13678999999999999999887643
No 12
>PRK06114 short chain dehydrogenase; Provisional
Probab=96.67 E-value=0.026 Score=48.47 Aligned_cols=37 Identities=24% Similarity=0.170 Sum_probs=31.9
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.++|++|||.| +|..|.++|+.|++.||.|+++.|..
T Consensus 6 ~~~k~~lVtG~------------------s~gIG~~ia~~l~~~G~~v~~~~r~~ 42 (254)
T PRK06114 6 LDGQVAFVTGA------------------GSGIGQRIAIGLAQAGADVALFDLRT 42 (254)
T ss_pred CCCCEEEEECC------------------CchHHHHHHHHHHHCCCEEEEEeCCc
Confidence 47889999976 46789999999999999999988653
No 13
>PRK08589 short chain dehydrogenase; Validated
Probab=96.62 E-value=0.015 Score=50.74 Aligned_cols=36 Identities=28% Similarity=0.196 Sum_probs=31.3
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..+|++|||.| +|..|.++|+.|+++|+.|+.+.|.
T Consensus 4 l~~k~vlItGa------------------s~gIG~aia~~l~~~G~~vi~~~r~ 39 (272)
T PRK08589 4 LENKVAVITGA------------------STGIGQASAIALAQEGAYVLAVDIA 39 (272)
T ss_pred CCCCEEEEECC------------------CchHHHHHHHHHHHCCCEEEEEeCc
Confidence 36889999977 4678999999999999999998764
No 14
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=96.61 E-value=0.015 Score=49.86 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=31.5
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..+|++|||.| +|..|.++|+.|+++|+.|+++.|.
T Consensus 6 ~~~k~vlVtGa------------------s~gIG~~la~~l~~~G~~v~~~~r~ 41 (260)
T PRK12823 6 FAGKVVVVTGA------------------AQGIGRGVALRAAAEGARVVLVDRS 41 (260)
T ss_pred cCCCEEEEeCC------------------CchHHHHHHHHHHHCCCEEEEEeCc
Confidence 47889999987 5788999999999999999988764
No 15
>PRK07478 short chain dehydrogenase; Provisional
Probab=96.61 E-value=0.034 Score=47.50 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=31.4
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..+|++|||.| +|..|.++|+.|+++|+.|+++.|.
T Consensus 4 ~~~k~~lItGa------------------s~giG~~ia~~l~~~G~~v~~~~r~ 39 (254)
T PRK07478 4 LNGKVAIITGA------------------SSGIGRAAAKLFAREGAKVVVGARR 39 (254)
T ss_pred CCCCEEEEeCC------------------CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 36789999976 6788999999999999999998865
No 16
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.60 E-value=0.015 Score=50.30 Aligned_cols=38 Identities=13% Similarity=0.166 Sum_probs=32.1
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.+||+++||.|++ ++..|.++|+.|+++|+.|++.+|.
T Consensus 5 l~~k~~lItGas~----------------~~gIG~a~a~~la~~G~~Vi~~~r~ 42 (252)
T PRK06079 5 LSGKKIVVMGVAN----------------KRSIAWGCAQAIKDQGATVIYTYQN 42 (252)
T ss_pred cCCCEEEEeCCCC----------------CCchHHHHHHHHHHCCCEEEEecCc
Confidence 4789999998843 3678999999999999999988764
No 17
>PRK06841 short chain dehydrogenase; Provisional
Probab=96.57 E-value=0.0081 Score=51.20 Aligned_cols=36 Identities=33% Similarity=0.348 Sum_probs=31.9
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..+|++|||.| +|..|.++|+.|+++|+.|+.+.|.
T Consensus 13 ~~~k~vlItGa------------------s~~IG~~la~~l~~~G~~Vi~~~r~ 48 (255)
T PRK06841 13 LSGKVAVVTGG------------------ASGIGHAIAELFAAKGARVALLDRS 48 (255)
T ss_pred CCCCEEEEECC------------------CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 47889999976 6888999999999999999998875
No 18
>PRK07856 short chain dehydrogenase; Provisional
Probab=96.56 E-value=0.016 Score=49.57 Aligned_cols=37 Identities=32% Similarity=0.371 Sum_probs=32.8
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
..+|++|||.| ||..|.++|+.|+++|+.|+++.|..
T Consensus 4 ~~~k~~lItGa------------------s~gIG~~la~~l~~~g~~v~~~~r~~ 40 (252)
T PRK07856 4 LTGRVVLVTGG------------------TRGIGAGIARAFLAAGATVVVCGRRA 40 (252)
T ss_pred CCCCEEEEeCC------------------CchHHHHHHHHHHHCCCEEEEEeCCh
Confidence 47899999988 68889999999999999999998754
No 19
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=96.54 E-value=0.018 Score=49.54 Aligned_cols=36 Identities=28% Similarity=0.269 Sum_probs=31.7
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.++|++|||.| +|..|.++|+.|+++|+.|+++++.
T Consensus 5 ~~~k~~lItGa------------------~~gIG~~ia~~l~~~G~~vvi~~~~ 40 (261)
T PRK08936 5 LEGKVVVITGG------------------STGLGRAMAVRFGKEKAKVVINYRS 40 (261)
T ss_pred CCCCEEEEeCC------------------CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 47899999988 5788999999999999999988764
No 20
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=96.52 E-value=0.027 Score=47.80 Aligned_cols=36 Identities=22% Similarity=0.141 Sum_probs=30.7
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
++||++|||.| +|..|.++|++|+++||.|+.+.|.
T Consensus 3 ~~~k~vlItGa------------------s~gIG~~ia~~l~~~G~~vi~~~r~ 38 (248)
T TIGR01832 3 LEGKVALVTGA------------------NTGLGQGIAVGLAEAGADIVGAGRS 38 (248)
T ss_pred CCCCEEEEECC------------------CchHHHHHHHHHHHCCCEEEEEcCc
Confidence 47899999976 3567999999999999999998763
No 21
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=96.50 E-value=0.031 Score=48.01 Aligned_cols=45 Identities=27% Similarity=0.197 Sum_probs=35.4
Q ss_pred HHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 30 KEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 30 ~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.+|+....+ +.+|+||||.|+ |..|.++|+.|++.||.|+++.+.
T Consensus 4 ~~~~~~~~~--l~~k~vlItGas------------------~gIG~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 4 DKFSMDFFS--LDGKVAIVTGGN------------------TGLGQGYAVALAKAGADIIITTHG 48 (258)
T ss_pred hhhcccccc--CCCCEEEEeCCC------------------chHHHHHHHHHHHCCCEEEEEeCC
Confidence 455544332 478999999775 678999999999999999998765
No 22
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.48 E-value=0.026 Score=49.58 Aligned_cols=37 Identities=8% Similarity=0.051 Sum_probs=30.6
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEee
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r 93 (225)
.++|++|||.|+ |++..|.++|+.|++.||.|++++|
T Consensus 8 ~~~k~~lItGas----------------~~~GIG~aia~~la~~G~~V~l~~r 44 (272)
T PRK08159 8 MAGKRGLILGVA----------------NNRSIAWGIAKACRAAGAELAFTYQ 44 (272)
T ss_pred ccCCEEEEECCC----------------CCCcHHHHHHHHHHHCCCEEEEEcC
Confidence 467899999763 3467899999999999999988765
No 23
>PRK07791 short chain dehydrogenase; Provisional
Probab=96.47 E-value=0.038 Score=48.83 Aligned_cols=36 Identities=25% Similarity=0.159 Sum_probs=31.0
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..+|++|||.| +|..|.++|+.|+++|+.|+++.+.
T Consensus 4 l~~k~~lITGa------------------s~GIG~aia~~la~~G~~vii~~~~ 39 (286)
T PRK07791 4 LDGRVVIVTGA------------------GGGIGRAHALAFAAEGARVVVNDIG 39 (286)
T ss_pred cCCCEEEEECC------------------CchHHHHHHHHHHHCCCEEEEeeCC
Confidence 36889999987 4678999999999999999988754
No 24
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.47 E-value=0.021 Score=49.60 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=31.4
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..||+++||.|+ ||+..|.++|+.|+++|+.|+++.|.
T Consensus 5 ~~~k~~lItGa~----------------~s~GIG~aia~~la~~G~~v~~~~r~ 42 (257)
T PRK08594 5 LEGKTYVVMGVA----------------NKRSIAWGIARSLHNAGAKLVFTYAG 42 (257)
T ss_pred cCCCEEEEECCC----------------CCCCHHHHHHHHHHHCCCEEEEecCc
Confidence 368899999874 23678999999999999999988753
No 25
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.45 E-value=0.028 Score=49.31 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=29.6
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+||++|||.|+ |++..|.++|+.|+++|+.|++.+|.
T Consensus 5 ~~k~~lITGas----------------~~~GIG~aia~~la~~G~~vil~~r~ 41 (262)
T PRK07984 5 SGKRILVTGVA----------------SKLSIAYGIAQAMHREGAELAFTYQN 41 (262)
T ss_pred CCCEEEEeCCC----------------CCccHHHHHHHHHHHCCCEEEEEecc
Confidence 67888888873 12478999999999999999877653
No 26
>PRK06523 short chain dehydrogenase; Provisional
Probab=96.44 E-value=0.02 Score=49.08 Aligned_cols=37 Identities=30% Similarity=0.319 Sum_probs=32.9
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
++||++|||.| ||..|.++|+.|+++|+.|+.+.|..
T Consensus 7 ~~~k~vlItGa------------------s~gIG~~ia~~l~~~G~~v~~~~r~~ 43 (260)
T PRK06523 7 LAGKRALVTGG------------------TKGIGAATVARLLEAGARVVTTARSR 43 (260)
T ss_pred CCCCEEEEECC------------------CCchhHHHHHHHHHCCCEEEEEeCCh
Confidence 47899999987 67889999999999999999998764
No 27
>PRK06128 oxidoreductase; Provisional
Probab=96.41 E-value=0.03 Score=49.72 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=30.2
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+.+|+||||.|. |..|.++|+.|+++||.|++.++.
T Consensus 53 l~~k~vlITGas------------------~gIG~~~a~~l~~~G~~V~i~~~~ 88 (300)
T PRK06128 53 LQGRKALITGAD------------------SGIGRATAIAFAREGADIALNYLP 88 (300)
T ss_pred cCCCEEEEecCC------------------CcHHHHHHHHHHHcCCEEEEEeCC
Confidence 467899999764 577999999999999999887643
No 28
>PRK07035 short chain dehydrogenase; Provisional
Probab=96.40 E-value=0.046 Score=46.56 Aligned_cols=36 Identities=31% Similarity=0.293 Sum_probs=30.9
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+.+|++|||.|+ |..|.++|++|+++|+.|+.+.|.
T Consensus 6 l~~k~vlItGas------------------~gIG~~l~~~l~~~G~~Vi~~~r~ 41 (252)
T PRK07035 6 LTGKIALVTGAS------------------RGIGEAIAKLLAQQGAHVIVSSRK 41 (252)
T ss_pred cCCCEEEEECCC------------------cHHHHHHHHHHHHCCCEEEEEeCC
Confidence 467899999653 788999999999999999998864
No 29
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=96.37 E-value=0.031 Score=48.14 Aligned_cols=36 Identities=19% Similarity=0.097 Sum_probs=30.7
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..||++|||.|+ |..|.++|+.|+++||.|+.+.+.
T Consensus 6 l~~k~~lItGas------------------~gIG~aia~~l~~~G~~vv~~~~~ 41 (251)
T PRK12481 6 LNGKVAIITGCN------------------TGLGQGMAIGLAKAGADIVGVGVA 41 (251)
T ss_pred cCCCEEEEeCCC------------------chHHHHHHHHHHHCCCEEEEecCc
Confidence 368899999874 678999999999999999987653
No 30
>PRK08628 short chain dehydrogenase; Provisional
Probab=96.37 E-value=0.037 Score=47.28 Aligned_cols=36 Identities=28% Similarity=0.287 Sum_probs=31.2
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+.|+++|||.| ||..|.++|++|+++|+.|+++.|+
T Consensus 5 l~~~~ilItGa------------------sggiG~~la~~l~~~G~~v~~~~r~ 40 (258)
T PRK08628 5 LKDKVVIVTGG------------------ASGIGAAISLRLAEEGAIPVIFGRS 40 (258)
T ss_pred cCCCEEEEeCC------------------CChHHHHHHHHHHHcCCcEEEEcCC
Confidence 57889999874 5778999999999999999998765
No 31
>PRK07062 short chain dehydrogenase; Provisional
Probab=96.36 E-value=0.033 Score=47.91 Aligned_cols=36 Identities=39% Similarity=0.399 Sum_probs=31.5
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..||++|||.| +|..|.++|+.|+++|+.|+++.|.
T Consensus 6 l~~k~~lItGa------------------s~giG~~ia~~l~~~G~~V~~~~r~ 41 (265)
T PRK07062 6 LEGRVAVVTGG------------------SSGIGLATVELLLEAGASVAICGRD 41 (265)
T ss_pred cCCCEEEEeCC------------------CchHHHHHHHHHHHCCCeEEEEeCC
Confidence 47889999987 4688999999999999999988864
No 32
>PRK06179 short chain dehydrogenase; Provisional
Probab=96.35 E-value=0.032 Score=48.15 Aligned_cols=26 Identities=35% Similarity=0.410 Sum_probs=23.2
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
||..|.++|++|+++|+.|+.+.|..
T Consensus 13 sg~iG~~~a~~l~~~g~~V~~~~r~~ 38 (270)
T PRK06179 13 SSGIGRATAEKLARAGYRVFGTSRNP 38 (270)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 57889999999999999999988763
No 33
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=96.32 E-value=0.047 Score=47.10 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=30.6
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..+|++|||.|+ |..|.++|++|+++|+.|+++.+.
T Consensus 8 ~~~k~~lItGa~------------------~~iG~~ia~~l~~~G~~vv~~~~~ 43 (265)
T PRK07097 8 LKGKIALITGAS------------------YGIGFAIAKAYAKAGATIVFNDIN 43 (265)
T ss_pred CCCCEEEEeCCC------------------chHHHHHHHHHHHCCCeEEEEeCC
Confidence 478899999775 677999999999999999887643
No 34
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=96.28 E-value=0.057 Score=46.26 Aligned_cols=36 Identities=28% Similarity=0.285 Sum_probs=31.1
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..+|++|||.|. |..|.++|+.|+++|+.|+.+.|.
T Consensus 10 ~~~k~ilItGa~------------------g~IG~~la~~l~~~G~~V~~~~r~ 45 (259)
T PRK08213 10 LSGKTALVTGGS------------------RGLGLQIAEALGEAGARVVLSARK 45 (259)
T ss_pred cCCCEEEEECCC------------------chHHHHHHHHHHHcCCEEEEEeCC
Confidence 378899999653 788999999999999999998864
No 35
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.28 E-value=0.038 Score=48.06 Aligned_cols=37 Identities=14% Similarity=0.014 Sum_probs=30.5
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEee
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r 93 (225)
.++|.+|||.|+ |++..|.++|+.|+++|+.|++.++
T Consensus 4 ~~~k~~lITGa~----------------~~~GIG~a~a~~l~~~G~~v~~~~~ 40 (261)
T PRK08690 4 LQGKKILITGMI----------------SERSIAYGIAKACREQGAELAFTYV 40 (261)
T ss_pred cCCcEEEEECCC----------------CCCcHHHHHHHHHHHCCCEEEEEcC
Confidence 368899999873 2456799999999999999998764
No 36
>PRK12937 short chain dehydrogenase; Provisional
Probab=96.27 E-value=0.063 Score=45.19 Aligned_cols=36 Identities=36% Similarity=0.372 Sum_probs=30.2
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..+++++||.| +|..|.++|++|+++|+.|+++.++
T Consensus 3 ~~~~~vlItG~------------------~~~iG~~la~~l~~~g~~v~~~~~~ 38 (245)
T PRK12937 3 LSNKVAIVTGA------------------SRGIGAAIARRLAADGFAVAVNYAG 38 (245)
T ss_pred CCCCEEEEeCC------------------CchHHHHHHHHHHHCCCEEEEecCC
Confidence 36788888876 3678999999999999999988754
No 37
>PRK05867 short chain dehydrogenase; Provisional
Probab=96.27 E-value=0.057 Score=46.19 Aligned_cols=36 Identities=19% Similarity=0.137 Sum_probs=30.4
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.+||++|||.| +|..|.++|+.|+++|+.|+++.|.
T Consensus 7 ~~~k~vlVtGa------------------s~gIG~~ia~~l~~~G~~V~~~~r~ 42 (253)
T PRK05867 7 LHGKRALITGA------------------STGIGKRVALAYVEAGAQVAIAARH 42 (253)
T ss_pred CCCCEEEEECC------------------CchHHHHHHHHHHHCCCEEEEEcCC
Confidence 36889999876 3567999999999999999988764
No 38
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.22 E-value=0.046 Score=47.49 Aligned_cols=36 Identities=17% Similarity=0.105 Sum_probs=29.4
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccc-hhHHHHHHHHHHCCCEEEEEee
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSG-HRGAASTEHLIKMGYAVIFLYR 93 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG-~~Ga~iAe~fl~~G~~Vi~l~r 93 (225)
..||++|||.|+ +| ..|.++|+.|+++||.|++..|
T Consensus 6 ~~~k~~lITGas-----------------~~~GIG~a~a~~la~~G~~v~~~~r 42 (260)
T PRK06603 6 LQGKKGLITGIA-----------------NNMSISWAIAQLAKKHGAELWFTYQ 42 (260)
T ss_pred cCCcEEEEECCC-----------------CCcchHHHHHHHHHHcCCEEEEEeC
Confidence 468889998873 33 4799999999999999988764
No 39
>PRK06398 aldose dehydrogenase; Validated
Probab=96.21 E-value=0.04 Score=47.62 Aligned_cols=37 Identities=30% Similarity=0.262 Sum_probs=31.5
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
..||++|||.|. |..|.++|+.|+++||.|+.+.|..
T Consensus 4 l~gk~vlItGas------------------~gIG~~ia~~l~~~G~~Vi~~~r~~ 40 (258)
T PRK06398 4 LKDKVAIVTGGS------------------QGIGKAVVNRLKEEGSNVINFDIKE 40 (258)
T ss_pred CCCCEEEEECCC------------------chHHHHHHHHHHHCCCeEEEEeCCc
Confidence 478899999764 7789999999999999999887653
No 40
>PRK07985 oxidoreductase; Provisional
Probab=96.20 E-value=0.038 Score=49.12 Aligned_cols=36 Identities=28% Similarity=0.243 Sum_probs=30.8
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.++|++|||.| +|..|.++|+.|+++|+.|+++.+.
T Consensus 47 ~~~k~vlITGa------------------s~gIG~aia~~L~~~G~~Vi~~~~~ 82 (294)
T PRK07985 47 LKDRKALVTGG------------------DSGIGRAAAIAYAREGADVAISYLP 82 (294)
T ss_pred cCCCEEEEECC------------------CCcHHHHHHHHHHHCCCEEEEecCC
Confidence 46788999987 6888999999999999999887643
No 41
>PRK07109 short chain dehydrogenase; Provisional
Probab=96.18 E-value=0.066 Score=48.73 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=31.3
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..+++||||.| ||..|.++|++|+++|+.|+++.|.
T Consensus 6 l~~k~vlITGa------------------s~gIG~~la~~la~~G~~Vvl~~R~ 41 (334)
T PRK07109 6 IGRQVVVITGA------------------SAGVGRATARAFARRGAKVVLLARG 41 (334)
T ss_pred CCCCEEEEECC------------------CCHHHHHHHHHHHHCCCEEEEEECC
Confidence 36789999976 5788999999999999999998864
No 42
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=96.17 E-value=0.074 Score=45.45 Aligned_cols=36 Identities=39% Similarity=0.256 Sum_probs=30.8
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
++||+||||.| +|..|.++|+.|+++||.|+++.|.
T Consensus 8 ~~~k~vlItGa------------------~g~iG~~ia~~l~~~G~~V~~~~r~ 43 (255)
T PRK07523 8 LTGRRALVTGS------------------SQGIGYALAEGLAQAGAEVILNGRD 43 (255)
T ss_pred CCCCEEEEECC------------------cchHHHHHHHHHHHcCCEEEEEeCC
Confidence 47889999976 4677999999999999999988764
No 43
>PRK06138 short chain dehydrogenase; Provisional
Probab=96.16 E-value=0.044 Score=46.37 Aligned_cols=36 Identities=31% Similarity=0.345 Sum_probs=31.4
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+++|.+|||.|. |..|..+|+.|+++|+.|+.+.|.
T Consensus 3 ~~~k~~lItG~s------------------g~iG~~la~~l~~~G~~v~~~~r~ 38 (252)
T PRK06138 3 LAGRVAIVTGAG------------------SGIGRATAKLFAREGARVVVADRD 38 (252)
T ss_pred CCCcEEEEeCCC------------------chHHHHHHHHHHHCCCeEEEecCC
Confidence 367889998774 888999999999999999998865
No 44
>PRK08226 short chain dehydrogenase; Provisional
Probab=96.15 E-value=0.05 Score=46.63 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=29.8
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.+|++|||.| ||..|.++|+.|+++||.|+.+.|.
T Consensus 5 ~~~~~lItG~------------------s~giG~~la~~l~~~G~~Vv~~~r~ 39 (263)
T PRK08226 5 TGKTALITGA------------------LQGIGEGIARVFARHGANLILLDIS 39 (263)
T ss_pred CCCEEEEeCC------------------CChHHHHHHHHHHHCCCEEEEecCC
Confidence 5778888876 4678999999999999999998765
No 45
>PRK05717 oxidoreductase; Validated
Probab=96.14 E-value=0.06 Score=46.08 Aligned_cols=35 Identities=29% Similarity=0.311 Sum_probs=31.6
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEee
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r 93 (225)
++||+++||.| +|..|.++|+.|+++|+.|+++.+
T Consensus 8 ~~~k~vlItG~------------------sg~IG~~~a~~l~~~g~~v~~~~~ 42 (255)
T PRK05717 8 HNGRVALVTGA------------------ARGIGLGIAAWLIAEGWQVVLADL 42 (255)
T ss_pred cCCCEEEEeCC------------------cchHHHHHHHHHHHcCCEEEEEcC
Confidence 58899999988 688899999999999999999864
No 46
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=96.12 E-value=0.043 Score=47.24 Aligned_cols=37 Identities=27% Similarity=0.275 Sum_probs=31.6
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
..+|++|||.| +|..|.++|+.|+++|+.|+++.+..
T Consensus 7 l~~k~vlItG~------------------s~gIG~~la~~l~~~G~~v~~~~~~~ 43 (266)
T PRK06171 7 LQGKIIIVTGG------------------SSGIGLAIVKELLANGANVVNADIHG 43 (266)
T ss_pred CCCCEEEEeCC------------------CChHHHHHHHHHHHCCCEEEEEeCCc
Confidence 36889999975 47889999999999999999987654
No 47
>PRK07774 short chain dehydrogenase; Provisional
Probab=96.12 E-value=0.06 Score=45.57 Aligned_cols=35 Identities=31% Similarity=0.363 Sum_probs=30.3
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.+|++|||.| ||..|.++|++|+++|+.|+.+.|.
T Consensus 5 ~~k~vlItGa------------------sg~iG~~la~~l~~~g~~vi~~~r~ 39 (250)
T PRK07774 5 DDKVAIVTGA------------------AGGIGQAYAEALAREGASVVVADIN 39 (250)
T ss_pred CCCEEEEECC------------------CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 6788888865 4788999999999999999998865
No 48
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=96.11 E-value=0.083 Score=45.54 Aligned_cols=36 Identities=17% Similarity=0.301 Sum_probs=30.9
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.++|++|||.| +|..|.++|+.|+++|+.|++++++
T Consensus 6 l~~k~vlItGa------------------s~gIG~~ia~~l~~~G~~v~~~~~~ 41 (260)
T PRK08416 6 MKGKTLVISGG------------------TRGIGKAIVYEFAQSGVNIAFTYNS 41 (260)
T ss_pred cCCCEEEEeCC------------------CchHHHHHHHHHHHCCCEEEEEcCC
Confidence 47899999964 4778999999999999999988754
No 49
>PRK07063 short chain dehydrogenase; Provisional
Probab=96.11 E-value=0.076 Score=45.52 Aligned_cols=36 Identities=28% Similarity=0.205 Sum_probs=30.2
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.++|++|||.| +|..|.++|+.|+++|+.|+++.|.
T Consensus 5 l~~k~vlVtGa------------------s~gIG~~~a~~l~~~G~~vv~~~r~ 40 (260)
T PRK07063 5 LAGKVALVTGA------------------AQGIGAAIARAFAREGAAVALADLD 40 (260)
T ss_pred cCCCEEEEECC------------------CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 36788888865 3667999999999999999998864
No 50
>PRK06196 oxidoreductase; Provisional
Probab=96.09 E-value=0.075 Score=47.45 Aligned_cols=36 Identities=33% Similarity=0.343 Sum_probs=31.1
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..+|+||||.| ||..|.++|++|+++|+.|+++.|.
T Consensus 24 l~~k~vlITGa------------------sggIG~~~a~~L~~~G~~Vv~~~R~ 59 (315)
T PRK06196 24 LSGKTAIVTGG------------------YSGLGLETTRALAQAGAHVIVPARR 59 (315)
T ss_pred CCCCEEEEeCC------------------CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 47889999976 4678999999999999999998864
No 51
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.09 E-value=0.056 Score=47.48 Aligned_cols=38 Identities=11% Similarity=0.112 Sum_probs=30.8
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.+||++|||.|+ +.+..|.++|+.|++.||.|++..|.
T Consensus 5 l~~k~~lVTGas----------------~~~GIG~aiA~~la~~Ga~V~~~~r~ 42 (271)
T PRK06505 5 MQGKRGLIMGVA----------------NDHSIAWGIAKQLAAQGAELAFTYQG 42 (271)
T ss_pred cCCCEEEEeCCC----------------CCCcHHHHHHHHHHhCCCEEEEecCc
Confidence 478899999875 11257999999999999999987653
No 52
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=96.06 E-value=0.078 Score=45.12 Aligned_cols=36 Identities=22% Similarity=0.159 Sum_probs=30.7
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.++|++|||.| ||..|.++|++|+++||.|+.+.|.
T Consensus 5 ~~~~~vlItGa------------------sg~iG~~la~~l~~~G~~v~~~~r~ 40 (262)
T PRK13394 5 LNGKTAVVTGA------------------ASGIGKEIALELARAGAAVAIADLN 40 (262)
T ss_pred CCCCEEEEECC------------------CChHHHHHHHHHHHCCCeEEEEeCC
Confidence 36889999965 4788999999999999999988764
No 53
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.06 E-value=0.061 Score=47.44 Aligned_cols=38 Identities=8% Similarity=0.082 Sum_probs=31.0
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..||+||||.|+ |++..|.++|+.|++.|+.|++..|.
T Consensus 3 l~~k~~lItGas----------------~~~GIG~aiA~~la~~G~~Vil~~r~ 40 (274)
T PRK08415 3 MKGKKGLIVGVA----------------NNKSIAYGIAKACFEQGAELAFTYLN 40 (274)
T ss_pred cCCcEEEEECCC----------------CCCCHHHHHHHHHHHCCCEEEEEecC
Confidence 368899999874 23567999999999999999987654
No 54
>PRK08265 short chain dehydrogenase; Provisional
Probab=96.04 E-value=0.046 Score=47.26 Aligned_cols=36 Identities=31% Similarity=0.293 Sum_probs=31.3
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.++|++|||.| ||..|.++|+.|+++|+.|+++.|.
T Consensus 4 ~~~k~vlItGa------------------s~gIG~~ia~~l~~~G~~V~~~~r~ 39 (261)
T PRK08265 4 LAGKVAIVTGG------------------ATLIGAAVARALVAAGARVAIVDID 39 (261)
T ss_pred CCCCEEEEECC------------------CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 36789999977 5788999999999999999998764
No 55
>PRK07814 short chain dehydrogenase; Provisional
Probab=96.04 E-value=0.083 Score=45.63 Aligned_cols=35 Identities=31% Similarity=0.349 Sum_probs=30.6
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+++++|||.|+ |..|.++|+.|+++||.|+.+.|.
T Consensus 9 ~~~~vlItGas------------------ggIG~~~a~~l~~~G~~Vi~~~r~ 43 (263)
T PRK07814 9 DDQVAVVTGAG------------------RGLGAAIALAFAEAGADVLIAART 43 (263)
T ss_pred CCCEEEEECCC------------------ChHHHHHHHHHHHCCCEEEEEeCC
Confidence 67888888763 778999999999999999998875
No 56
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.03 E-value=0.063 Score=46.72 Aligned_cols=37 Identities=14% Similarity=0.023 Sum_probs=30.5
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEee
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r 93 (225)
..+|++|||.|+ |++..|.++|+.|++.|+.|+++.+
T Consensus 4 l~~k~vlItGas----------------~~~GIG~a~a~~l~~~G~~v~~~~~ 40 (260)
T PRK06997 4 LAGKRILITGLL----------------SNRSIAYGIAKACKREGAELAFTYV 40 (260)
T ss_pred cCCcEEEEeCCC----------------CCCcHHHHHHHHHHHCCCeEEEEcc
Confidence 367899999873 2367899999999999999998764
No 57
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=96.02 E-value=0.085 Score=45.74 Aligned_cols=36 Identities=33% Similarity=0.445 Sum_probs=31.5
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.++|+++||.| +|..|.++|+.|+++|+.|+++.|.
T Consensus 8 ~~~k~vlVtGa------------------s~giG~~ia~~l~~~G~~V~~~~r~ 43 (278)
T PRK08277 8 LKGKVAVITGG------------------GGVLGGAMAKELARAGAKVAILDRN 43 (278)
T ss_pred cCCCEEEEeCC------------------CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 47889999887 6788999999999999999988764
No 58
>PRK12744 short chain dehydrogenase; Provisional
Probab=95.99 E-value=0.1 Score=44.70 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=29.7
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+++|++|||.| +|..|.++|+.|+++|+.|+.+++.
T Consensus 6 l~~k~vlItGa------------------~~gIG~~~a~~l~~~G~~vv~i~~~ 41 (257)
T PRK12744 6 LKGKVVLIAGG------------------AKNLGGLIARDLAAQGAKAVAIHYN 41 (257)
T ss_pred CCCcEEEEECC------------------CchHHHHHHHHHHHCCCcEEEEecC
Confidence 46788998865 3567999999999999998888754
No 59
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.99 E-value=0.076 Score=45.49 Aligned_cols=38 Identities=26% Similarity=0.349 Sum_probs=31.2
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.++|.+|||.|+ +.|..|.++|++|+++||.|+++.|.
T Consensus 3 l~~k~vlItGas----------------~~~giG~~la~~l~~~G~~vi~~~r~ 40 (256)
T PRK12748 3 LMKKIALVTGAS----------------RLNGIGAAVCRRLAAKGIDIFFTYWS 40 (256)
T ss_pred CCCcEEEEeCCC----------------CCCCHHHHHHHHHHHcCCcEEEEcCC
Confidence 467888888764 23678999999999999999988764
No 60
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=95.97 E-value=0.063 Score=45.44 Aligned_cols=35 Identities=31% Similarity=0.439 Sum_probs=28.8
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
++|+++||.| ||..|.++|+.|+++|+.|+.+++.
T Consensus 2 ~~k~~lVtG~------------------s~giG~~~a~~l~~~G~~vv~~~~~ 36 (246)
T PRK12938 2 SQRIAYVTGG------------------MGGIGTSICQRLHKDGFKVVAGCGP 36 (246)
T ss_pred CCCEEEEECC------------------CChHHHHHHHHHHHcCCEEEEEcCC
Confidence 4677888865 5778999999999999999887653
No 61
>PRK08643 acetoin reductase; Validated
Probab=95.96 E-value=0.082 Score=45.10 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=22.1
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+|..|.++|++|+++||.|+.+.|.
T Consensus 11 s~giG~~la~~l~~~G~~v~~~~r~ 35 (256)
T PRK08643 11 GQGIGFAIAKRLVEDGFKVAIVDYN 35 (256)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4778999999999999999988764
No 62
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=95.94 E-value=0.076 Score=44.89 Aligned_cols=25 Identities=20% Similarity=0.062 Sum_probs=22.8
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+|..|.++|++|+++|+.|+.+.|.
T Consensus 10 ~g~lG~~l~~~l~~~g~~v~~~~r~ 34 (255)
T TIGR01963 10 ASGIGLAIALALAAAGANVVVNDLG 34 (255)
T ss_pred cchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4888999999999999999999875
No 63
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=95.93 E-value=0.12 Score=41.02 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=20.4
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
+|..|.++|+.|+++|+.++++.++.
T Consensus 9 ~~giG~~~a~~l~~~g~~~v~~~~r~ 34 (167)
T PF00106_consen 9 SSGIGRALARALARRGARVVILTSRS 34 (167)
T ss_dssp TSHHHHHHHHHHHHTTTEEEEEEESS
T ss_pred CCHHHHHHHHHHHhcCceEEEEeeec
Confidence 57789999999999977665555544
No 64
>PLN02253 xanthoxin dehydrogenase
Probab=95.90 E-value=0.063 Score=46.63 Aligned_cols=36 Identities=25% Similarity=0.197 Sum_probs=31.5
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..+|++|||.| +|..|.++|++|+++|+.|+++.+.
T Consensus 16 l~~k~~lItGa------------------s~gIG~~la~~l~~~G~~v~~~~~~ 51 (280)
T PLN02253 16 LLGKVALVTGG------------------ATGIGESIVRLFHKHGAKVCIVDLQ 51 (280)
T ss_pred cCCCEEEEECC------------------CchHHHHHHHHHHHcCCEEEEEeCC
Confidence 36889999987 5788999999999999999998754
No 65
>PRK05876 short chain dehydrogenase; Provisional
Probab=95.88 E-value=0.11 Score=45.63 Aligned_cols=36 Identities=22% Similarity=0.201 Sum_probs=29.9
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..||.+|||.| +|..|.++|+.|+++|+.|+++.+.
T Consensus 4 ~~~k~vlVTGa------------------s~gIG~ala~~La~~G~~Vv~~~r~ 39 (275)
T PRK05876 4 FPGRGAVITGG------------------ASGIGLATGTEFARRGARVVLGDVD 39 (275)
T ss_pred cCCCEEEEeCC------------------CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 46888999865 3567999999999999999987754
No 66
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=95.88 E-value=0.13 Score=43.77 Aligned_cols=36 Identities=25% Similarity=0.147 Sum_probs=31.4
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+.+|+++||.|+ |..|.++|+.|+++|+.|+++.|.
T Consensus 9 ~~~k~ilItGas------------------~~IG~~la~~l~~~G~~v~~~~r~ 44 (256)
T PRK06124 9 LAGQVALVTGSA------------------RGLGFEIARALAGAGAHVLVNGRN 44 (256)
T ss_pred CCCCEEEEECCC------------------chHHHHHHHHHHHcCCeEEEEeCC
Confidence 478899998764 677999999999999999998875
No 67
>PRK05866 short chain dehydrogenase; Provisional
Probab=95.88 E-value=0.11 Score=46.23 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=31.4
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.++++++||.|+ |..|.++|+.|+++|++|+++.|.
T Consensus 38 ~~~k~vlItGas------------------ggIG~~la~~La~~G~~Vi~~~R~ 73 (293)
T PRK05866 38 LTGKRILLTGAS------------------SGIGEAAAEQFARRGATVVAVARR 73 (293)
T ss_pred CCCCEEEEeCCC------------------cHHHHHHHHHHHHCCCEEEEEECC
Confidence 467899999864 778999999999999999998875
No 68
>PRK08278 short chain dehydrogenase; Provisional
Probab=95.88 E-value=0.12 Score=45.13 Aligned_cols=37 Identities=11% Similarity=0.109 Sum_probs=31.4
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.++|+++||.|+ |..|.++|+.|+++|+.|+++.|..
T Consensus 4 ~~~k~vlItGas------------------~gIG~~ia~~l~~~G~~V~~~~r~~ 40 (273)
T PRK08278 4 LSGKTLFITGAS------------------RGIGLAIALRAARDGANIVIAAKTA 40 (273)
T ss_pred CCCCEEEEECCC------------------chHHHHHHHHHHHCCCEEEEEeccc
Confidence 367889998873 6789999999999999999988764
No 69
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.88 E-value=0.096 Score=44.36 Aligned_cols=35 Identities=26% Similarity=0.204 Sum_probs=29.7
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
++|++|||.| ||..|.++|++|+++||.|+.+.|.
T Consensus 3 ~~~~vlItG~------------------sg~iG~~la~~l~~~g~~v~~~~r~ 37 (258)
T PRK12429 3 KGKVALVTGA------------------ASGIGLEIALALAKEGAKVVIADLN 37 (258)
T ss_pred CCCEEEEECC------------------CchHHHHHHHHHHHCCCeEEEEeCC
Confidence 5678888865 5678999999999999999998865
No 70
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=95.87 E-value=0.094 Score=45.02 Aligned_cols=35 Identities=20% Similarity=0.140 Sum_probs=29.5
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEee
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r 93 (225)
+.||.+|||.| +|..|.++|++|++.||.|+.+.+
T Consensus 8 l~~k~~lItG~------------------~~gIG~a~a~~l~~~G~~vv~~~~ 42 (253)
T PRK08993 8 LEGKVAVVTGC------------------DTGLGQGMALGLAEAGCDIVGINI 42 (253)
T ss_pred CCCCEEEEECC------------------CchHHHHHHHHHHHCCCEEEEecC
Confidence 47889999976 367899999999999999987753
No 71
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.86 E-value=0.057 Score=48.24 Aligned_cols=36 Identities=25% Similarity=0.245 Sum_probs=31.3
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
++||++|||.| +|..|.++|++|+++|+.|+++.+.
T Consensus 10 l~~k~~lVTGa------------------s~gIG~~ia~~L~~~Ga~Vv~~~~~ 45 (306)
T PRK07792 10 LSGKVAVVTGA------------------AAGLGRAEALGLARLGATVVVNDVA 45 (306)
T ss_pred CCCCEEEEECC------------------CChHHHHHHHHHHHCCCEEEEecCC
Confidence 58899999988 4678999999999999999987653
No 72
>PRK05854 short chain dehydrogenase; Provisional
Probab=95.86 E-value=0.073 Score=47.81 Aligned_cols=36 Identities=25% Similarity=0.241 Sum_probs=30.7
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..||+++||.|. |..|.++|++|+++|+.|+++.|.
T Consensus 12 l~gk~~lITGas------------------~GIG~~~a~~La~~G~~Vil~~R~ 47 (313)
T PRK05854 12 LSGKRAVVTGAS------------------DGLGLGLARRLAAAGAEVILPVRN 47 (313)
T ss_pred cCCCEEEEeCCC------------------ChHHHHHHHHHHHCCCEEEEEeCC
Confidence 478899999653 578999999999999999998764
No 73
>PRK06194 hypothetical protein; Provisional
Probab=95.85 E-value=0.09 Score=45.73 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=30.3
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+++++|||.| +|..|.++|++|+++|+.|+++.+.
T Consensus 5 ~~k~vlVtGa------------------sggIG~~la~~l~~~G~~V~~~~r~ 39 (287)
T PRK06194 5 AGKVAVITGA------------------ASGFGLAFARIGAALGMKLVLADVQ 39 (287)
T ss_pred CCCEEEEeCC------------------ccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 6788999986 4778999999999999999988764
No 74
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=95.84 E-value=0.05 Score=46.30 Aligned_cols=37 Identities=27% Similarity=0.307 Sum_probs=31.9
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
+.+|+++||.|. |..|.++|++|+++|+.|+.+.|..
T Consensus 10 ~~~k~vlItG~~------------------g~iG~~la~~l~~~G~~Vi~~~r~~ 46 (247)
T PRK08945 10 LKDRIILVTGAG------------------DGIGREAALTYARHGATVILLGRTE 46 (247)
T ss_pred cCCCEEEEeCCC------------------chHHHHHHHHHHHCCCcEEEEeCCH
Confidence 478889998764 7899999999999999999988753
No 75
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=95.82 E-value=0.1 Score=44.53 Aligned_cols=36 Identities=14% Similarity=0.038 Sum_probs=31.2
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+.+|++|||.|+ |..|.++|+.|++.|+.|+++.|.
T Consensus 7 l~~k~~lItGas------------------~giG~~ia~~L~~~G~~vvl~~r~ 42 (254)
T PRK08085 7 LAGKNILITGSA------------------QGIGFLLATGLAEYGAEIIINDIT 42 (254)
T ss_pred CCCCEEEEECCC------------------ChHHHHHHHHHHHcCCEEEEEcCC
Confidence 478899999764 778999999999999999988765
No 76
>PRK06500 short chain dehydrogenase; Provisional
Probab=95.81 E-value=0.11 Score=43.88 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=31.1
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.+|+++||.| +|..|.++|++|+++|+.|+++.|.
T Consensus 5 ~~k~vlItGa------------------sg~iG~~la~~l~~~g~~v~~~~r~ 39 (249)
T PRK06500 5 QGKTALITGG------------------TSGIGLETARQFLAEGARVAITGRD 39 (249)
T ss_pred CCCEEEEeCC------------------CchHHHHHHHHHHHCCCEEEEecCC
Confidence 6789999987 6899999999999999999988764
No 77
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=95.81 E-value=0.14 Score=42.76 Aligned_cols=35 Identities=34% Similarity=0.372 Sum_probs=29.5
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
++|++|||.| ||..|.++|+.|+++||.|+++.+.
T Consensus 4 ~~~~vlItG~------------------sg~iG~~l~~~l~~~G~~v~~~~~~ 38 (248)
T PRK05557 4 EGKVALVTGA------------------SRGIGRAIAERLAAQGANVVINYAS 38 (248)
T ss_pred CCCEEEEECC------------------CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 5678888763 4889999999999999999888764
No 78
>PRK12743 oxidoreductase; Provisional
Probab=95.80 E-value=0.13 Score=44.10 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=21.7
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
||..|.++|+.|+++|+.|+++.++
T Consensus 11 s~giG~~~a~~l~~~G~~V~~~~~~ 35 (256)
T PRK12743 11 DSGIGKACALLLAQQGFDIGITWHS 35 (256)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4668999999999999999888654
No 79
>PRK12939 short chain dehydrogenase; Provisional
Probab=95.76 E-value=0.15 Score=42.99 Aligned_cols=35 Identities=31% Similarity=0.247 Sum_probs=29.8
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
++|++|||.| +|..|.++|+.|+++|+.|+.+.|.
T Consensus 6 ~~~~vlItGa------------------~g~iG~~la~~l~~~G~~v~~~~r~ 40 (250)
T PRK12939 6 AGKRALVTGA------------------ARGLGAAFAEALAEAGATVAFNDGL 40 (250)
T ss_pred CCCEEEEeCC------------------CChHHHHHHHHHHHcCCEEEEEeCC
Confidence 6788888875 4889999999999999999888643
No 80
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=95.75 E-value=0.098 Score=44.99 Aligned_cols=36 Identities=33% Similarity=0.382 Sum_probs=30.5
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.++|++|||.|+ |..|.++|+.|+++|+.|+++.|.
T Consensus 4 ~~~k~vlVtGas------------------~gIG~~ia~~l~~~G~~V~~~~r~ 39 (263)
T PRK06200 4 LHGQVALITGGG------------------SGIGRALVERFLAEGARVAVLERS 39 (263)
T ss_pred CCCCEEEEeCCC------------------chHHHHHHHHHHHCCCEEEEEeCC
Confidence 367888888764 678999999999999999988764
No 81
>PRK06197 short chain dehydrogenase; Provisional
Probab=95.74 E-value=0.088 Score=46.66 Aligned_cols=36 Identities=28% Similarity=0.325 Sum_probs=31.0
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..+|+||||.| +|..|.++|+.|+++|+.|+++.|.
T Consensus 14 ~~~k~vlItGa------------------s~gIG~~~a~~l~~~G~~vi~~~r~ 49 (306)
T PRK06197 14 QSGRVAVVTGA------------------NTGLGYETAAALAAKGAHVVLAVRN 49 (306)
T ss_pred CCCCEEEEcCC------------------CCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 37889999965 4778999999999999999988864
No 82
>PRK12746 short chain dehydrogenase; Provisional
Probab=95.70 E-value=0.16 Score=43.11 Aligned_cols=33 Identities=33% Similarity=0.302 Sum_probs=28.1
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEe
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLY 92 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~ 92 (225)
++++++||.| ||..|.++|++|+++|+.|+++.
T Consensus 5 ~~~~ilItGa------------------sg~iG~~la~~l~~~G~~v~i~~ 37 (254)
T PRK12746 5 DGKVALVTGA------------------SRGIGRAIAMRLANDGALVAIHY 37 (254)
T ss_pred CCCEEEEeCC------------------CchHHHHHHHHHHHCCCEEEEEc
Confidence 5678888874 48899999999999999998764
No 83
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.67 E-value=0.13 Score=43.41 Aligned_cols=35 Identities=29% Similarity=0.234 Sum_probs=29.8
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+++.++||. .+|..|..+|++|+++|+.|+++.|+
T Consensus 6 ~~~~vlVtG------------------~sg~iG~~l~~~L~~~G~~Vi~~~r~ 40 (239)
T PRK07666 6 QGKNALITG------------------AGRGIGRAVAIALAKEGVNVGLLART 40 (239)
T ss_pred CCCEEEEEc------------------CCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 567788875 35788999999999999999999875
No 84
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.66 E-value=0.094 Score=44.55 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=22.7
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
||..|.++|+.|+++|+.|+.+.|.
T Consensus 11 sg~iG~~la~~L~~~g~~vi~~~r~ 35 (256)
T PRK12745 11 RRGIGLGIARALAAAGFDLAINDRP 35 (256)
T ss_pred CchHHHHHHHHHHHCCCEEEEEecC
Confidence 6888999999999999999998765
No 85
>PRK12829 short chain dehydrogenase; Provisional
Probab=95.66 E-value=0.16 Score=43.17 Aligned_cols=36 Identities=22% Similarity=0.094 Sum_probs=30.8
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..++++|||.| +|..|..+|+.|+++|+.|+.+.|.
T Consensus 9 ~~~~~vlItGa------------------~g~iG~~~a~~L~~~g~~V~~~~r~ 44 (264)
T PRK12829 9 LDGLRVLVTGG------------------ASGIGRAIAEAFAEAGARVHVCDVS 44 (264)
T ss_pred cCCCEEEEeCC------------------CCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 36789999965 5778999999999999999888864
No 86
>PRK08303 short chain dehydrogenase; Provisional
Probab=95.64 E-value=0.15 Score=45.91 Aligned_cols=37 Identities=22% Similarity=0.095 Sum_probs=31.6
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.+||++|||.|+ +..|.++|++|++.|+.|++++|..
T Consensus 6 l~~k~~lITGgs------------------~GIG~aia~~la~~G~~Vv~~~r~~ 42 (305)
T PRK08303 6 LRGKVALVAGAT------------------RGAGRGIAVELGAAGATVYVTGRST 42 (305)
T ss_pred CCCCEEEEeCCC------------------chHHHHHHHHHHHCCCEEEEEeccc
Confidence 478899999874 5689999999999999999988753
No 87
>PRK12827 short chain dehydrogenase; Provisional
Probab=95.64 E-value=0.18 Score=42.33 Aligned_cols=35 Identities=34% Similarity=0.340 Sum_probs=29.5
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.+++++||.| +|..|..+|++|+++||.|+.+.+.
T Consensus 5 ~~~~ilItGa------------------sg~iG~~la~~l~~~g~~v~~~~~~ 39 (249)
T PRK12827 5 DSRRVLITGG------------------SGGLGRAIAVRLAADGADVIVLDIH 39 (249)
T ss_pred CCCEEEEECC------------------CChHHHHHHHHHHHCCCeEEEEcCc
Confidence 5678888864 4788999999999999999998754
No 88
>PRK05875 short chain dehydrogenase; Provisional
Probab=95.64 E-value=0.12 Score=44.63 Aligned_cols=36 Identities=28% Similarity=0.305 Sum_probs=30.7
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.++|++|||.| +|..|.++|+.|+++||.|+++.|.
T Consensus 5 ~~~k~vlItGa------------------sg~IG~~la~~l~~~G~~V~~~~r~ 40 (276)
T PRK05875 5 FQDRTYLVTGG------------------GSGIGKGVAAGLVAAGAAVMIVGRN 40 (276)
T ss_pred CCCCEEEEECC------------------CcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 36788999864 3778999999999999999998865
No 89
>PRK07825 short chain dehydrogenase; Provisional
Probab=95.64 E-value=0.19 Score=43.48 Aligned_cols=36 Identities=22% Similarity=0.213 Sum_probs=30.0
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..++++|||.| ||..|.++|+.|+++|+.|+++.|.
T Consensus 3 ~~~~~ilVtGa------------------sggiG~~la~~l~~~G~~v~~~~r~ 38 (273)
T PRK07825 3 LRGKVVAITGG------------------ARGIGLATARALAALGARVAIGDLD 38 (273)
T ss_pred CCCCEEEEeCC------------------CchHHHHHHHHHHHCCCEEEEEECC
Confidence 36788999865 3778999999999999999887654
No 90
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.61 E-value=0.2 Score=42.26 Aligned_cols=35 Identities=29% Similarity=0.336 Sum_probs=29.5
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.++++|||.|+ |..|.++|++|+++||.|+++.++
T Consensus 5 ~~~~vlitGas------------------g~iG~~l~~~l~~~g~~v~~~~~~ 39 (252)
T PRK06077 5 KDKVVVVTGSG------------------RGIGRAIAVRLAKEGSLVVVNAKK 39 (252)
T ss_pred CCcEEEEeCCC------------------ChHHHHHHHHHHHCCCEEEEEeCC
Confidence 56788888763 778999999999999999887654
No 91
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=95.60 E-value=0.13 Score=43.23 Aligned_cols=35 Identities=31% Similarity=0.221 Sum_probs=29.8
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.+|++|||.| +|..|.++|++|+++||.|+.+.|.
T Consensus 5 ~~~~ilItGa------------------sg~iG~~l~~~l~~~g~~V~~~~r~ 39 (251)
T PRK12826 5 EGRVALVTGA------------------ARGIGRAIAVRLAADGAEVIVVDIC 39 (251)
T ss_pred CCCEEEEcCC------------------CCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 5678888764 5788999999999999999998875
No 92
>PRK06701 short chain dehydrogenase; Provisional
Probab=95.60 E-value=0.1 Score=46.32 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=31.7
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.++|++|||.| +|..|.++|+.|+++|+.|+++.+.
T Consensus 44 ~~~k~iLItGa------------------sggIG~~la~~l~~~G~~V~l~~r~ 79 (290)
T PRK06701 44 LKGKVALITGG------------------DSGIGRAVAVLFAKEGADIAIVYLD 79 (290)
T ss_pred CCCCEEEEeCC------------------CcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46889999987 7888999999999999999988764
No 93
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=95.53 E-value=0.21 Score=42.93 Aligned_cols=36 Identities=25% Similarity=0.286 Sum_probs=30.1
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..+|+++||.| ||..|.++|+.|+++|+.|+++.|.
T Consensus 3 ~~~k~vlItGa------------------s~gIG~~ia~~l~~~G~~V~~~~r~ 38 (262)
T TIGR03325 3 LKGEVVLVTGG------------------ASGLGRAIVDRFVAEGARVAVLDKS 38 (262)
T ss_pred cCCcEEEEECC------------------CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 36788888865 4578999999999999999988764
No 94
>PRK08862 short chain dehydrogenase; Provisional
Probab=95.52 E-value=0.26 Score=42.20 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=30.5
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.+||+++||.|+ +..|.++|+.|+++|+.|+++.|.
T Consensus 3 ~~~k~~lVtGas------------------~GIG~aia~~la~~G~~V~~~~r~ 38 (227)
T PRK08862 3 IKSSIILITSAG------------------SVLGRTISCHFARLGATLILCDQD 38 (227)
T ss_pred CCCeEEEEECCc------------------cHHHHHHHHHHHHCCCEEEEEcCC
Confidence 468889998875 456999999999999999998764
No 95
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=95.51 E-value=0.15 Score=43.55 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=30.1
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+.+|++|||.|. |..|.++|++|+++|+.|+.+.|.
T Consensus 4 l~~~~vlItGas------------------~~iG~~ia~~l~~~G~~v~~~~r~ 39 (257)
T PRK07067 4 LQGKVALLTGAA------------------SGIGEAVAERYLAEGARVVIADIK 39 (257)
T ss_pred CCCCEEEEeCCC------------------chHHHHHHHHHHHcCCEEEEEcCC
Confidence 357788888764 678999999999999999988764
No 96
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.50 E-value=0.21 Score=42.27 Aligned_cols=33 Identities=33% Similarity=0.410 Sum_probs=26.9
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEe
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLY 92 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~ 92 (225)
.++++|||.| +|..|.++|++|+++|+.|+.+.
T Consensus 3 ~~~~vlItGa------------------~g~iG~~~a~~l~~~g~~v~~~~ 35 (250)
T PRK08063 3 SGKVALVTGS------------------SRGIGKAIALRLAEEGYDIAVNY 35 (250)
T ss_pred CCCEEEEeCC------------------CchHHHHHHHHHHHCCCEEEEEc
Confidence 4567777765 47789999999999999998753
No 97
>PRK06139 short chain dehydrogenase; Provisional
Probab=95.48 E-value=0.18 Score=46.07 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=30.5
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..+|+||||.| ||..|.++|+.|+++|+.|+++.|.
T Consensus 5 l~~k~vlITGA------------------s~GIG~aia~~la~~G~~Vvl~~R~ 40 (330)
T PRK06139 5 LHGAVVVITGA------------------SSGIGQATAEAFARRGARLVLAARD 40 (330)
T ss_pred CCCCEEEEcCC------------------CCHHHHHHHHHHHHCCCEEEEEECC
Confidence 36788999865 3778999999999999999988764
No 98
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.47 E-value=0.24 Score=42.66 Aligned_cols=37 Identities=30% Similarity=0.329 Sum_probs=29.7
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEee
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r 93 (225)
++||++|||.|. ..|..|.++|++|+++|+.|++.++
T Consensus 4 l~~k~vlVtGas----------------~~~giG~~~a~~l~~~G~~vi~~~~ 40 (256)
T PRK12859 4 LKNKVAVVTGVS----------------RLDGIGAAICKELAEAGADIFFTYW 40 (256)
T ss_pred cCCcEEEEECCC----------------CCCChHHHHHHHHHHCCCeEEEEec
Confidence 478999999652 1246799999999999999988764
No 99
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=95.46 E-value=0.11 Score=44.11 Aligned_cols=37 Identities=19% Similarity=0.090 Sum_probs=31.0
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
..+|++|||.| +|..|.++|+.|+++||.|+.+.+..
T Consensus 6 ~~~k~vlItGa------------------s~~iG~~la~~l~~~G~~v~~~~~~~ 42 (252)
T PRK08220 6 FSGKTVWVTGA------------------AQGIGYAVALAFVEAGAKVIGFDQAF 42 (252)
T ss_pred CCCCEEEEeCC------------------CchHHHHHHHHHHHCCCEEEEEecch
Confidence 36788999865 46679999999999999999998754
No 100
>PRK07806 short chain dehydrogenase; Provisional
Probab=95.46 E-value=0.15 Score=43.22 Aligned_cols=36 Identities=31% Similarity=0.324 Sum_probs=30.3
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..+++++||.| ||..|.++|++|++.|++|+.+.|.
T Consensus 4 ~~~k~vlItGa------------------sggiG~~l~~~l~~~G~~V~~~~r~ 39 (248)
T PRK07806 4 LPGKTALVTGS------------------SRGIGADTAKILAGAGAHVVVNYRQ 39 (248)
T ss_pred CCCcEEEEECC------------------CCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 36788888864 5778999999999999999988764
No 101
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=95.45 E-value=0.21 Score=42.25 Aligned_cols=35 Identities=34% Similarity=0.393 Sum_probs=29.3
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
++|+++||.|. |..|.++|++|+++|+.|+.+.++
T Consensus 5 ~~~~~lItG~s------------------~~iG~~la~~l~~~g~~v~~~~~~ 39 (247)
T PRK12935 5 NGKVAIVTGGA------------------KGIGKAITVALAQEGAKVVINYNS 39 (247)
T ss_pred CCCEEEEECCC------------------CHHHHHHHHHHHHcCCEEEEEcCC
Confidence 57788888763 788999999999999999877654
No 102
>PRK09242 tropinone reductase; Provisional
Probab=95.44 E-value=0.23 Score=42.47 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=30.9
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.++|+++||.|+ |..|.++|+.|+++|+.|+++.|.
T Consensus 7 ~~~k~~lItGa~------------------~gIG~~~a~~l~~~G~~v~~~~r~ 42 (257)
T PRK09242 7 LDGQTALITGAS------------------KGIGLAIAREFLGLGADVLIVARD 42 (257)
T ss_pred cCCCEEEEeCCC------------------chHHHHHHHHHHHcCCEEEEEeCC
Confidence 478899999653 778999999999999999999864
No 103
>PRK09134 short chain dehydrogenase; Provisional
Probab=95.38 E-value=0.22 Score=42.69 Aligned_cols=36 Identities=31% Similarity=0.387 Sum_probs=30.0
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..+|++|||.|+ |..|..+|+.|+++|+.|+.+.+.
T Consensus 7 ~~~k~vlItGas------------------~giG~~la~~l~~~g~~v~~~~~~ 42 (258)
T PRK09134 7 AAPRAALVTGAA------------------RRIGRAIALDLAAHGFDVAVHYNR 42 (258)
T ss_pred CCCCEEEEeCCC------------------cHHHHHHHHHHHHCCCEEEEEeCC
Confidence 357889999653 788999999999999999887654
No 104
>PRK06484 short chain dehydrogenase; Validated
Probab=95.34 E-value=0.21 Score=47.52 Aligned_cols=72 Identities=18% Similarity=0.157 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHhhCCCCCCCCceEEEecCceee---------ecC-----CCCeeEEecCccchhHHHHHHHHHHCCC
Q 027330 21 DRAAISQKLKEFIALNSSESGTRRVACVTSGGTTV---------PLE-----QRCVRYIDNFSSGHRGAASTEHLIKMGY 86 (225)
Q Consensus 21 ~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~e---------pID-----~~~VRfI~NfSSG~~Ga~iAe~fl~~G~ 86 (225)
+++++.+.+. |+.........|..+.+-.|.+.. +-+ .+.+=.|+ -.+|..|.++|+.|+++|+
T Consensus 217 ~~~~va~~v~-~l~~~~~~~~~G~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~k~~lIt-Gas~gIG~~~a~~l~~~G~ 294 (520)
T PRK06484 217 RPEEIAEAVF-FLASDQASYITGSTLVVDGGWTVYGGSGPASTAQAPSPLAESPRVVAIT-GGARGIGRAVADRFAAAGD 294 (520)
T ss_pred CHHHHHHHHH-HHhCccccCccCceEEecCCeeccccccCCCCccCCCCcccCCCEEEEE-CCCcHHHHHHHHHHHHCCC
Confidence 6777776664 443321111356666655443311 111 11222344 3466789999999999999
Q ss_pred EEEEEeec
Q 027330 87 AVIFLYRR 94 (225)
Q Consensus 87 ~Vi~l~r~ 94 (225)
.|+++.|.
T Consensus 295 ~V~~~~r~ 302 (520)
T PRK06484 295 RLLIIDRD 302 (520)
T ss_pred EEEEEeCC
Confidence 99998764
No 105
>PRK12747 short chain dehydrogenase; Provisional
Probab=95.34 E-value=0.26 Score=41.98 Aligned_cols=34 Identities=29% Similarity=0.298 Sum_probs=28.6
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEee
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r 93 (225)
.+|++|||.|+ |..|.++|+.|++.|+.|+++.+
T Consensus 3 ~~k~~lItGas------------------~gIG~~ia~~l~~~G~~v~~~~~ 36 (252)
T PRK12747 3 KGKVALVTGAS------------------RGIGRAIAKRLANDGALVAIHYG 36 (252)
T ss_pred CCCEEEEeCCC------------------ChHHHHHHHHHHHCCCeEEEEcC
Confidence 57888888764 66799999999999999988653
No 106
>PRK07074 short chain dehydrogenase; Provisional
Probab=95.29 E-value=0.14 Score=43.60 Aligned_cols=34 Identities=29% Similarity=0.360 Sum_probs=28.8
Q ss_pred CceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 43 ~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+|++|||.| ||..|.++|+.|+++|+.|+.+.|.
T Consensus 2 ~k~ilItGa------------------t~~iG~~la~~L~~~g~~v~~~~r~ 35 (257)
T PRK07074 2 KRTALVTGA------------------AGGIGQALARRFLAAGDRVLALDID 35 (257)
T ss_pred CCEEEEECC------------------cchHHHHHHHHHHHCCCEEEEEeCC
Confidence 457888877 5678999999999999999998764
No 107
>PRK06484 short chain dehydrogenase; Validated
Probab=95.20 E-value=0.17 Score=48.11 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=30.7
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..||++|||.|+ |..|.++|+.|+++|+.|+++.|.
T Consensus 3 ~~~k~~lITGas------------------~gIG~aia~~l~~~G~~V~~~~r~ 38 (520)
T PRK06484 3 AQSRVVLVTGAA------------------GGIGRAACQRFARAGDQVVVADRN 38 (520)
T ss_pred CCCeEEEEECCC------------------cHHHHHHHHHHHHCCCEEEEEeCC
Confidence 367889999765 568999999999999999998765
No 108
>PRK09135 pteridine reductase; Provisional
Probab=95.18 E-value=0.11 Score=43.58 Aligned_cols=35 Identities=37% Similarity=0.551 Sum_probs=30.5
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.++++|||.|+ |..|..+|++|+++|+.|+.+.|.
T Consensus 5 ~~~~vlItGa~------------------g~iG~~l~~~l~~~g~~v~~~~r~ 39 (249)
T PRK09135 5 SAKVALITGGA------------------RRIGAAIARTLHAAGYRVAIHYHR 39 (249)
T ss_pred CCCEEEEeCCC------------------chHHHHHHHHHHHCCCEEEEEcCC
Confidence 56788998764 789999999999999999998865
No 109
>PRK07577 short chain dehydrogenase; Provisional
Probab=95.15 E-value=0.19 Score=42.08 Aligned_cols=37 Identities=27% Similarity=0.283 Sum_probs=30.8
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
.+|++|||.| ||..|..+|++|+++|+.|+.+.|...
T Consensus 2 ~~k~vlItG~------------------s~~iG~~ia~~l~~~G~~v~~~~r~~~ 38 (234)
T PRK07577 2 SSRTVLVTGA------------------TKGIGLALSLRLANLGHQVIGIARSAI 38 (234)
T ss_pred CCCEEEEECC------------------CCcHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 4677888855 478899999999999999999987643
No 110
>PRK05872 short chain dehydrogenase; Provisional
Probab=95.14 E-value=0.19 Score=44.59 Aligned_cols=36 Identities=19% Similarity=0.153 Sum_probs=31.1
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.+||++|||.|+ |..|.++|+.|+++|+.|+++.|.
T Consensus 7 l~gk~vlItGas------------------~gIG~~ia~~l~~~G~~V~~~~r~ 42 (296)
T PRK05872 7 LAGKVVVVTGAA------------------RGIGAELARRLHARGAKLALVDLE 42 (296)
T ss_pred CCCCEEEEECCC------------------chHHHHHHHHHHHCCCEEEEEeCC
Confidence 478899999764 778999999999999999888764
No 111
>PRK06172 short chain dehydrogenase; Provisional
Probab=95.13 E-value=0.24 Score=42.16 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=31.1
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.++|++|||.| +|..|.++|+.|+++|+.|+.+.|..
T Consensus 5 l~~k~ilItGa------------------s~~iG~~ia~~l~~~G~~v~~~~r~~ 41 (253)
T PRK06172 5 FSGKVALVTGG------------------AAGIGRATALAFAREGAKVVVADRDA 41 (253)
T ss_pred CCCCEEEEeCC------------------CchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 36788888875 47789999999999999999988653
No 112
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=95.13 E-value=0.32 Score=40.68 Aligned_cols=25 Identities=32% Similarity=0.310 Sum_probs=22.3
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
||..|..+|+.|+++|+.|+.+.|+
T Consensus 9 sg~iG~~la~~l~~~G~~v~~~~r~ 33 (242)
T TIGR01829 9 MGGIGTAICQRLAKDGYRVAANCGP 33 (242)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 5778999999999999999998873
No 113
>PRK06720 hypothetical protein; Provisional
Probab=95.12 E-value=0.44 Score=39.59 Aligned_cols=36 Identities=33% Similarity=0.252 Sum_probs=30.6
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.++|+++||.|+ |..|.++|..|+++|+.|+++.+.
T Consensus 14 l~gk~~lVTGa~------------------~GIG~aia~~l~~~G~~V~l~~r~ 49 (169)
T PRK06720 14 LAGKVAIVTGGG------------------IGIGRNTALLLAKQGAKVIVTDID 49 (169)
T ss_pred cCCCEEEEecCC------------------ChHHHHHHHHHHHCCCEEEEEECC
Confidence 468889998876 678999999999999999888754
No 114
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=95.11 E-value=0.33 Score=41.50 Aligned_cols=36 Identities=14% Similarity=0.094 Sum_probs=31.1
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..+|+|+||.| +|..|.++|+.|+++|+.|+++.+.
T Consensus 9 l~~k~vlVtG~------------------s~gIG~~la~~l~~~G~~vv~~~r~ 44 (255)
T PRK06113 9 LDGKCAIITGA------------------GAGIGKEIAITFATAGASVVVSDIN 44 (255)
T ss_pred cCCCEEEEECC------------------CchHHHHHHHHHHHCCCeEEEEeCC
Confidence 36889999987 4788999999999999999988754
No 115
>PRK06182 short chain dehydrogenase; Validated
Probab=95.10 E-value=0.3 Score=42.28 Aligned_cols=35 Identities=37% Similarity=0.451 Sum_probs=29.1
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
++|+++||.| ||..|.++|++|+++|+.|+.+.|.
T Consensus 2 ~~k~vlItGa------------------sggiG~~la~~l~~~G~~V~~~~r~ 36 (273)
T PRK06182 2 QKKVALVTGA------------------SSGIGKATARRLAAQGYTVYGAARR 36 (273)
T ss_pred CCCEEEEECC------------------CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4567888754 4788999999999999999988765
No 116
>PRK08251 short chain dehydrogenase; Provisional
Probab=95.10 E-value=0.32 Score=41.18 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.4
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
||..|.++|+.|+++|+.|+++.|.
T Consensus 11 s~giG~~la~~l~~~g~~v~~~~r~ 35 (248)
T PRK08251 11 SSGLGAGMAREFAAKGRDLALCARR 35 (248)
T ss_pred CCHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4789999999999999999998764
No 117
>PRK06949 short chain dehydrogenase; Provisional
Probab=95.09 E-value=0.33 Score=41.21 Aligned_cols=36 Identities=33% Similarity=0.335 Sum_probs=31.1
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..+|.++||.| +|..|.++|+.|++.|+.|+.+.|.
T Consensus 7 ~~~k~ilItGa------------------sg~IG~~~a~~l~~~G~~Vi~~~r~ 42 (258)
T PRK06949 7 LEGKVALVTGA------------------SSGLGARFAQVLAQAGAKVVLASRR 42 (258)
T ss_pred CCCCEEEEECC------------------CcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 47889999876 4788999999999999999998765
No 118
>PRK07890 short chain dehydrogenase; Provisional
Probab=95.07 E-value=0.35 Score=41.08 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=29.6
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.+|++|||.| ||..|.++|++|+++|+.|+.+.|.
T Consensus 4 ~~k~vlItGa------------------~~~IG~~la~~l~~~G~~V~~~~r~ 38 (258)
T PRK07890 4 KGKVVVVSGV------------------GPGLGRTLAVRAARAGADVVLAART 38 (258)
T ss_pred CCCEEEEECC------------------CCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 5788888874 5678999999999999999888753
No 119
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=95.05 E-value=0.35 Score=40.79 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=29.4
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+++++|||.| ||..|.++|++|+++||.|+.+.|.
T Consensus 2 ~~~~ilItGa------------------s~~iG~~la~~l~~~g~~v~~~~r~ 36 (250)
T TIGR03206 2 KDKTAIVTGG------------------GGGIGGATCRRFAEEGAKVAVFDLN 36 (250)
T ss_pred CCCEEEEeCC------------------CChHHHHHHHHHHHCCCEEEEecCC
Confidence 5678888854 5778999999999999999988754
No 120
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=95.05 E-value=0.32 Score=40.53 Aligned_cols=35 Identities=26% Similarity=0.196 Sum_probs=29.7
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.++++|||.| +|..|..+|++|+++||.|+.+.|.
T Consensus 4 ~~~~ilItGa------------------sg~iG~~l~~~l~~~g~~v~~~~r~ 38 (246)
T PRK05653 4 QGKTALVTGA------------------SRGIGRAIALRLAADGAKVVIYDSN 38 (246)
T ss_pred CCCEEEEECC------------------CcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4567888763 5888999999999999999999875
No 121
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.03 E-value=0.17 Score=43.28 Aligned_cols=36 Identities=31% Similarity=0.411 Sum_probs=29.7
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..+|+++||.| +|..|.++|+.|+++|+.|+++.+.
T Consensus 5 l~~k~~lItGa------------------s~gIG~~~a~~l~~~G~~v~~~~~~ 40 (255)
T PRK06463 5 FKGKVALITGG------------------TRGIGRAIAEAFLREGAKVAVLYNS 40 (255)
T ss_pred cCCCEEEEeCC------------------CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 36788888876 4667999999999999999987654
No 122
>PRK07576 short chain dehydrogenase; Provisional
Probab=94.93 E-value=0.38 Score=41.63 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=30.3
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+.+|++|||.| +|..|.++|+.|+++|+.|+++.|.
T Consensus 7 ~~~k~ilItGa------------------sggIG~~la~~l~~~G~~V~~~~r~ 42 (264)
T PRK07576 7 FAGKNVVVVGG------------------TSGINLGIAQAFARAGANVAVASRS 42 (264)
T ss_pred CCCCEEEEECC------------------CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 36778888855 4778999999999999999999865
No 123
>PRK08264 short chain dehydrogenase; Validated
Probab=94.87 E-value=0.17 Score=42.62 Aligned_cols=37 Identities=27% Similarity=0.231 Sum_probs=31.3
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCC-EEEEEeecCC
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGY-AVIFLYRRGT 96 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~-~Vi~l~r~~s 96 (225)
.+++++||.| ||..|.++|+.|+++|+ .|+.+.|...
T Consensus 5 ~~~~vlItGg------------------sg~iG~~la~~l~~~G~~~V~~~~r~~~ 42 (238)
T PRK08264 5 KGKVVLVTGA------------------NRGIGRAFVEQLLARGAAKVYAAARDPE 42 (238)
T ss_pred CCCEEEEECC------------------CchHHHHHHHHHHHCCcccEEEEecChh
Confidence 6778888875 58889999999999999 9998887643
No 124
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.77 E-value=0.19 Score=43.46 Aligned_cols=38 Identities=13% Similarity=-0.101 Sum_probs=30.6
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..+|+++||.|++ ++..|.++|+.|+++|+.|+++.|.
T Consensus 5 ~~~k~~lItGa~~----------------s~GIG~a~a~~la~~G~~v~l~~r~ 42 (256)
T PRK07889 5 LEGKRILVTGVIT----------------DSSIAFHVARVAQEQGAEVVLTGFG 42 (256)
T ss_pred ccCCEEEEeCCCC----------------cchHHHHHHHHHHHCCCEEEEecCc
Confidence 3678999998742 2568999999999999999887653
No 125
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=94.74 E-value=0.3 Score=41.57 Aligned_cols=82 Identities=17% Similarity=0.204 Sum_probs=51.8
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeecCCCCCCccCCCCcccchhhhcccCCceEeeCcchHHHHHHHHHHHHHhhcCccc
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGLLL 148 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~~s~~P~~~~l~~~~~~~~l~~~~~~~i~v~~~~~~~~~~a~~~~~~~~~~~~ll 148 (225)
+|+..|.++|+.|++.|+.|++.++.... . ...+.+..+.+ ....+
T Consensus 4 ~s~GiG~aia~~l~~~Ga~V~~~~~~~~~-----------~------------------~~~~~~l~~~~-----~~~~~ 49 (241)
T PF13561_consen 4 SSSGIGRAIARALAEEGANVILTDRNEEK-----------L------------------ADALEELAKEY-----GAEVI 49 (241)
T ss_dssp STSHHHHHHHHHHHHTTEEEEEEESSHHH-----------H------------------HHHHHHHHHHT-----TSEEE
T ss_pred CCCChHHHHHHHHHHCCCEEEEEeCChHH-----------H------------------HHHHHHHHHHc-----CCceE
Confidence 56889999999999999999999965431 0 00111111111 12345
Q ss_pred ccccccHHHHHHHHHHHHHHhhcc-CCcceEEEeecccCc
Q 027330 149 KLPFTTIFEYLQMLQMIAVSSRSL-GPCSMFYLAAAVSDF 187 (225)
Q Consensus 149 ~i~F~t~~eYl~~L~~i~~~l~~~-~~~~~~~lAAAVSDf 187 (225)
..+.+.-.+.-...+. ..+.+ +.-|+++++|+.+..
T Consensus 50 ~~D~~~~~~v~~~~~~---~~~~~~g~iD~lV~~a~~~~~ 86 (241)
T PF13561_consen 50 QCDLSDEESVEALFDE---AVERFGGRIDILVNNAGISPP 86 (241)
T ss_dssp ESCTTSHHHHHHHHHH---HHHHHCSSESEEEEEEESCTG
T ss_pred eecCcchHHHHHHHHH---HHhhcCCCeEEEEeccccccc
Confidence 5556655555444443 34556 888999999998765
No 126
>PRK07024 short chain dehydrogenase; Provisional
Probab=94.73 E-value=0.29 Score=41.94 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.3
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
||..|.++|+.|+++|+.|+++.|.
T Consensus 11 s~gIG~~la~~l~~~G~~v~~~~r~ 35 (257)
T PRK07024 11 SSGIGQALAREYARQGATLGLVARR 35 (257)
T ss_pred CcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4688999999999999999998764
No 127
>PRK06180 short chain dehydrogenase; Provisional
Probab=94.71 E-value=0.4 Score=41.77 Aligned_cols=35 Identities=20% Similarity=0.132 Sum_probs=29.9
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.++++|||.| +|..|.++|+.|+++|+.|+.+.|.
T Consensus 3 ~~~~vlVtGa------------------sggiG~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 3 SMKTWLITGV------------------SSGFGRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CCCEEEEecC------------------CChHHHHHHHHHHhCcCEEEEEeCC
Confidence 3567888876 4788999999999999999999875
No 128
>PRK07454 short chain dehydrogenase; Provisional
Probab=94.70 E-value=0.43 Score=40.24 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.5
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+|..|..+|++|+++|+.|+.+.|+
T Consensus 15 sg~iG~~la~~l~~~G~~V~~~~r~ 39 (241)
T PRK07454 15 SSGIGKATALAFAKAGWDLALVARS 39 (241)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4788999999999999999998865
No 129
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=94.69 E-value=0.33 Score=43.35 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=29.8
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.+|++|||.| +|..|.++|++|+++|+.|+++.|.
T Consensus 5 ~~k~vlVTGa------------------s~gIG~~~a~~L~~~G~~V~~~~r~ 39 (322)
T PRK07453 5 AKGTVIITGA------------------SSGVGLYAAKALAKRGWHVIMACRN 39 (322)
T ss_pred CCCEEEEEcC------------------CChHHHHHHHHHHHCCCEEEEEECC
Confidence 6788888865 3678999999999999999998764
No 130
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.66 E-value=0.27 Score=40.91 Aligned_cols=36 Identities=33% Similarity=0.391 Sum_probs=29.3
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
..|++|||.| ||..|.++|++|+++|+.|+.+.+..
T Consensus 5 ~~~~vlItGa------------------sg~iG~~l~~~l~~~g~~v~~~~~~~ 40 (249)
T PRK12825 5 MGRVALVTGA------------------ARGLGRAIALRLARAGADVVVHYRSD 40 (249)
T ss_pred CCCEEEEeCC------------------CchHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4567888764 58899999999999999998877653
No 131
>PRK06123 short chain dehydrogenase; Provisional
Probab=94.65 E-value=0.45 Score=40.16 Aligned_cols=23 Identities=35% Similarity=0.366 Sum_probs=20.4
Q ss_pred chhHHHHHHHHHHCCCEEEEEee
Q 027330 71 GHRGAASTEHLIKMGYAVIFLYR 93 (225)
Q Consensus 71 G~~Ga~iAe~fl~~G~~Vi~l~r 93 (225)
|..|.++|++|+++|+.|+++.+
T Consensus 12 ~~iG~~~a~~l~~~G~~vv~~~~ 34 (248)
T PRK06123 12 RGIGAATALLAAERGYAVCLNYL 34 (248)
T ss_pred chHHHHHHHHHHHCCCeEEEecC
Confidence 77899999999999999987654
No 132
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.64 E-value=0.39 Score=40.59 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=29.8
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+.+|++|||.|+ |..|.++|+.|++.||.|+.+.++
T Consensus 3 l~~k~ilItGas------------------~gIG~~la~~l~~~G~~vv~~~~~ 38 (253)
T PRK08642 3 ISEQTVLVTGGS------------------RGLGAAIARAFAREGARVVVNYHQ 38 (253)
T ss_pred CCCCEEEEeCCC------------------CcHHHHHHHHHHHCCCeEEEEcCC
Confidence 367889998663 778999999999999999886653
No 133
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.60 E-value=0.56 Score=39.42 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=29.6
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.|+++|||.| +|..|..+|+.++++|+.|+.+.|.
T Consensus 4 ~~~~~lItG~------------------~g~iG~~~a~~l~~~G~~vi~~~r~ 38 (253)
T PRK08217 4 KDKVIVITGG------------------AQGLGRAMAEYLAQKGAKLALIDLN 38 (253)
T ss_pred CCCEEEEECC------------------CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 6778888864 4788999999999999999888754
No 134
>PRK07677 short chain dehydrogenase; Provisional
Probab=94.57 E-value=0.46 Score=40.55 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.7
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+|..|.++|+.|+++|+.|+.+.|.
T Consensus 10 s~giG~~ia~~l~~~G~~Vi~~~r~ 34 (252)
T PRK07677 10 SSGMGKAMAKRFAEEGANVVITGRT 34 (252)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 3568999999999999999888765
No 135
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.48 E-value=0.64 Score=38.90 Aligned_cols=35 Identities=37% Similarity=0.303 Sum_probs=29.1
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEE-ee
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFL-YR 93 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l-~r 93 (225)
+.+|++|||.| ||..|.++|+.|+++|+.|+.+ .|
T Consensus 3 ~~~~~ilI~Ga------------------sg~iG~~la~~l~~~g~~v~~~~~r 38 (247)
T PRK05565 3 LMGKVAIVTGA------------------SGGIGRAIAELLAKEGAKVVIAYDI 38 (247)
T ss_pred CCCCEEEEeCC------------------CcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 35678888864 4789999999999999999988 54
No 136
>PRK07326 short chain dehydrogenase; Provisional
Probab=94.45 E-value=0.4 Score=40.18 Aligned_cols=25 Identities=36% Similarity=0.381 Sum_probs=22.5
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
||..|.++|.+|+++|+.|+.+.|.
T Consensus 15 tg~iG~~la~~l~~~g~~V~~~~r~ 39 (237)
T PRK07326 15 SKGIGFAIAEALLAEGYKVAITARD 39 (237)
T ss_pred CCcHHHHHHHHHHHCCCEEEEeeCC
Confidence 5788999999999999999998764
No 137
>PRK06198 short chain dehydrogenase; Provisional
Probab=94.44 E-value=0.35 Score=41.17 Aligned_cols=36 Identities=31% Similarity=0.317 Sum_probs=29.6
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCE-EEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYA-VIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~-Vi~l~r~ 94 (225)
.++|+++||.| +|..|..+|+.|+++|+. |+.+.|.
T Consensus 4 ~~~k~vlItGa------------------~g~iG~~la~~l~~~G~~~V~~~~r~ 40 (260)
T PRK06198 4 LDGKVALVTGG------------------TQGLGAAIARAFAERGAAGLVICGRN 40 (260)
T ss_pred CCCcEEEEeCC------------------CchHHHHHHHHHHHCCCCeEEEEcCC
Confidence 36788888854 367899999999999999 8887764
No 138
>PRK06181 short chain dehydrogenase; Provisional
Probab=94.40 E-value=0.56 Score=40.08 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.4
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+|..|.++|+.|+++|+.|+.+.|.
T Consensus 10 sg~iG~~la~~l~~~g~~Vi~~~r~ 34 (263)
T PRK06181 10 SEGIGRALAVRLARAGAQLVLAARN 34 (263)
T ss_pred CcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4788999999999999999998864
No 139
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=94.33 E-value=0.3 Score=41.29 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=21.8
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+|..|..+|+.|+++|+.|++++++
T Consensus 11 s~giG~~la~~l~~~g~~v~~~~~~ 35 (248)
T PRK06947 11 SRGIGRATAVLAAARGWSVGINYAR 35 (248)
T ss_pred CCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 3778999999999999999887754
No 140
>PRK07201 short chain dehydrogenase; Provisional
Probab=94.31 E-value=0.43 Score=46.68 Aligned_cols=36 Identities=22% Similarity=0.284 Sum_probs=30.0
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.++|++|||.| ||..|.++|+.|+++|+.|+++.|.
T Consensus 369 ~~~k~vlItGa------------------s~giG~~la~~l~~~G~~V~~~~r~ 404 (657)
T PRK07201 369 LVGKVVLITGA------------------SSGIGRATAIKVAEAGATVFLVARN 404 (657)
T ss_pred CCCCEEEEeCC------------------CCHHHHHHHHHHHHCCCEEEEEECC
Confidence 35677888764 4788999999999999999998864
No 141
>PRK06482 short chain dehydrogenase; Provisional
Probab=94.28 E-value=0.35 Score=41.87 Aligned_cols=25 Identities=36% Similarity=0.335 Sum_probs=22.7
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+|..|.++|++|+++|+.|+.+.|+
T Consensus 11 sg~IG~~la~~L~~~g~~v~~~~r~ 35 (276)
T PRK06482 11 SSGFGRGMTERLLARGDRVAATVRR 35 (276)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5888999999999999999998865
No 142
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=93.97 E-value=0.4 Score=42.94 Aligned_cols=28 Identities=36% Similarity=0.459 Sum_probs=24.0
Q ss_pred CccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 68 FSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 68 fSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
-|||- |.++|+.|.+.||.|++..|+..
T Consensus 14 ASSGi-G~A~A~~l~~~G~~vvl~aRR~d 41 (246)
T COG4221 14 ASSGI-GEATARALAEAGAKVVLAARREE 41 (246)
T ss_pred CcchH-HHHHHHHHHHCCCeEEEEeccHH
Confidence 56664 99999999999999999998743
No 143
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=93.91 E-value=0.79 Score=38.40 Aligned_cols=34 Identities=29% Similarity=0.187 Sum_probs=28.1
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEee
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r 93 (225)
++++++||.| ||..|.++|+.|+++|+.|++..+
T Consensus 5 ~~~~vlItGa------------------~g~iG~~la~~l~~~g~~v~~~~~ 38 (245)
T PRK12936 5 SGRKALVTGA------------------SGGIGEEIARLLHAQGAIVGLHGT 38 (245)
T ss_pred CCCEEEEECC------------------CChHHHHHHHHHHHCCCEEEEEcC
Confidence 6788888865 378899999999999998876544
No 144
>PRK05693 short chain dehydrogenase; Provisional
Probab=93.86 E-value=0.38 Score=41.68 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=22.2
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
||..|.++|+.|+++|+.|+.+.|.
T Consensus 10 sggiG~~la~~l~~~G~~V~~~~r~ 34 (274)
T PRK05693 10 SSGIGRALADAFKAAGYEVWATARK 34 (274)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4778999999999999999988764
No 145
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=93.77 E-value=0.61 Score=41.86 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=21.6
Q ss_pred cchhHHHHHHHHHHCC-CEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMG-YAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G-~~Vi~l~r~ 94 (225)
||..|.++|+.|+++| +.|+++.|.
T Consensus 12 s~GIG~aia~~L~~~G~~~V~l~~r~ 37 (314)
T TIGR01289 12 SSGLGLYAAKALAATGEWHVIMACRD 37 (314)
T ss_pred CChHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4567999999999999 999988764
No 146
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.73 E-value=0.12 Score=43.49 Aligned_cols=37 Identities=24% Similarity=0.215 Sum_probs=31.6
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
+.++++|||.| ||..|.++|++|+++|+.|+.+.|..
T Consensus 3 ~~~~~vlItGa------------------sg~iG~~l~~~l~~~G~~V~~~~r~~ 39 (251)
T PRK07231 3 LEGKVAIVTGA------------------SSGIGEGIARRFAAEGARVVVTDRNE 39 (251)
T ss_pred cCCcEEEEECC------------------CChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 36788999955 38889999999999999999998864
No 147
>PRK06914 short chain dehydrogenase; Provisional
Probab=93.71 E-value=0.36 Score=41.76 Aligned_cols=35 Identities=37% Similarity=0.455 Sum_probs=29.4
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.+|.+|||.| ||..|.++|+.|+++||.|+.+.|.
T Consensus 2 ~~k~~lItGa------------------sg~iG~~la~~l~~~G~~V~~~~r~ 36 (280)
T PRK06914 2 NKKIAIVTGA------------------SSGFGLLTTLELAKKGYLVIATMRN 36 (280)
T ss_pred CCCEEEEECC------------------CchHHHHHHHHHHhCCCEEEEEeCC
Confidence 3567788864 6788999999999999999988765
No 148
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.46 E-value=2.1 Score=40.22 Aligned_cols=73 Identities=22% Similarity=0.195 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCC-----CCeeEEecCccchhHHHHHHHHHHCCCEEEEEee
Q 027330 19 LNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQ-----RCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (225)
Q Consensus 19 ~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~-----~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r 93 (225)
|.+.+++...+. |+......-..|+.+.+..|.+..|-+. +.+=.|+ -.+|..|.++|+.|+++|+.|+.+.+
T Consensus 165 ~~~~~~~~~~~~-~l~s~~~a~~~g~~i~~~~~~~~~~~~~~~~~~g~~vlIt-GasggIG~~la~~l~~~Ga~vi~~~~ 242 (450)
T PRK08261 165 PGAEAGLESTLR-FFLSPRSAYVSGQVVRVGAADAAPPADWDRPLAGKVALVT-GAARGIGAAIAEVLARDGAHVVCLDV 242 (450)
T ss_pred CCCHHHHHHHHH-HhcCCccCCccCcEEEecCCcccCCCCcccCCCCCEEEEe-cCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 345666655554 4433211112566777776665444331 1222333 35678999999999999999999865
No 149
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=93.41 E-value=0.54 Score=47.30 Aligned_cols=36 Identities=33% Similarity=0.398 Sum_probs=31.5
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+.+|+||||.|+ |..|.++|+.|+++|+.|+.+.+.
T Consensus 412 l~gkvvLVTGas------------------ggIG~aiA~~La~~Ga~Vvi~~r~ 447 (676)
T TIGR02632 412 LARRVAFVTGGA------------------GGIGRETARRLAAEGAHVVLADLN 447 (676)
T ss_pred CCCCEEEEeCCC------------------cHHHHHHHHHHHhCCCEEEEEeCC
Confidence 478999999764 788999999999999999998764
No 150
>PRK09186 flagellin modification protein A; Provisional
Probab=93.21 E-value=0.17 Score=43.02 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=29.6
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
++|+|+||.| ||..|.++|+.|+++||.|+++.|.
T Consensus 3 ~~k~vlItGa------------------s~giG~~~a~~l~~~g~~v~~~~r~ 37 (256)
T PRK09186 3 KGKTILITGA------------------GGLIGSALVKAILEAGGIVIAADID 37 (256)
T ss_pred CCCEEEEECC------------------CchHHHHHHHHHHHCCCEEEEEecC
Confidence 5778888865 4678999999999999999998765
No 151
>PRK05855 short chain dehydrogenase; Validated
Probab=92.95 E-value=1.3 Score=41.90 Aligned_cols=74 Identities=12% Similarity=0.138 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCceEE-EecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 18 PLNDRAAISQKLKEFIALNSSESGTRRVAC-VTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 18 ~~~~~~~i~~~l~~f~~~~~~~~~~~~~vl-ITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..+.++++.+.|.+|+....+. ...+... -+.|.+..++. .=+++==-.||..|.++|+.|+++|+.|+++.|.
T Consensus 274 ~~e~p~~~~~~i~~fl~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~ 348 (582)
T PRK05855 274 PMSHPQVLAAAVAEFVDAVEGG-PPARALLRARVGRPRGPFS--GKLVVVTGAGSGIGRETALAFAREGAEVVASDID 348 (582)
T ss_pred hhhChhHHHHHHHHHHHhccCC-CchHHHHHhhhccccccCC--CCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3446788888999998753210 0000000 01233333343 2222222456889999999999999999998864
No 152
>PRK08339 short chain dehydrogenase; Provisional
Probab=92.87 E-value=0.19 Score=43.64 Aligned_cols=36 Identities=28% Similarity=0.299 Sum_probs=30.8
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+.||++|||.| +|..|.++|+.|+++||.|+++.|.
T Consensus 6 l~~k~~lItGa------------------s~gIG~aia~~l~~~G~~V~~~~r~ 41 (263)
T PRK08339 6 LSGKLAFTTAS------------------SKGIGFGVARVLARAGADVILLSRN 41 (263)
T ss_pred CCCCEEEEeCC------------------CCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 47889999875 4677999999999999999988764
No 153
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=92.58 E-value=0.7 Score=45.98 Aligned_cols=37 Identities=30% Similarity=0.514 Sum_probs=32.3
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
+||+||||.|| |.-|.++|+++++.|.+.+.+.+.+-
T Consensus 249 ~gK~vLVTGag------------------GSiGsel~~qil~~~p~~i~l~~~~E 285 (588)
T COG1086 249 TGKTVLVTGGG------------------GSIGSELCRQILKFNPKEIILFSRDE 285 (588)
T ss_pred CCCEEEEeCCC------------------CcHHHHHHHHHHhcCCCEEEEecCch
Confidence 89999999986 88899999999999999888776543
No 154
>PRK07775 short chain dehydrogenase; Provisional
Probab=92.52 E-value=1.4 Score=38.42 Aligned_cols=35 Identities=37% Similarity=0.429 Sum_probs=28.5
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.+|.+|||.| +|..|.++|++|+++|+.|+.+.|.
T Consensus 9 ~~~~vlVtGa------------------~g~iG~~la~~L~~~G~~V~~~~r~ 43 (274)
T PRK07775 9 DRRPALVAGA------------------SSGIGAATAIELAAAGFPVALGARR 43 (274)
T ss_pred CCCEEEEECC------------------CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4567888854 4678999999999999999888764
No 155
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=92.50 E-value=1.2 Score=38.13 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=22.6
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
++|..|.++|+.|+++||.|+++.|.
T Consensus 8 as~gIG~aia~~l~~~G~~V~~~~r~ 33 (259)
T PRK08340 8 SSRGIGFNVARELLKKGARVVISSRN 33 (259)
T ss_pred CCcHHHHHHHHHHHHcCCEEEEEeCC
Confidence 35778999999999999999998764
No 156
>PRK07102 short chain dehydrogenase; Provisional
Probab=92.46 E-value=0.22 Score=42.20 Aligned_cols=26 Identities=12% Similarity=0.087 Sum_probs=23.7
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
||..|.++|+.|+++|+.|+.+.|..
T Consensus 10 s~giG~~~a~~l~~~G~~Vi~~~r~~ 35 (243)
T PRK07102 10 TSDIARACARRYAAAGARLYLAARDV 35 (243)
T ss_pred CcHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 78899999999999999999998754
No 157
>PRK12367 short chain dehydrogenase; Provisional
Probab=92.45 E-value=0.22 Score=43.35 Aligned_cols=37 Identities=27% Similarity=0.182 Sum_probs=31.7
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
..||+++||.| ||..|.++|+.|+++|+.|+++.|..
T Consensus 12 l~~k~~lITGa------------------s~gIG~ala~~l~~~G~~Vi~~~r~~ 48 (245)
T PRK12367 12 WQGKRIGITGA------------------SGALGKALTKAFRAKGAKVIGLTHSK 48 (245)
T ss_pred hCCCEEEEEcC------------------CcHHHHHHHHHHHHCCCEEEEEECCc
Confidence 47889999976 37889999999999999999988754
No 158
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=92.41 E-value=0.25 Score=43.59 Aligned_cols=36 Identities=31% Similarity=0.407 Sum_probs=31.3
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
++|+||||.| ||..|..+|++++++||.|+.+.|..
T Consensus 3 ~~~~ilVtGa------------------tGfIG~~l~~~L~~~g~~V~~~~r~~ 38 (322)
T PLN02662 3 EGKVVCVTGA------------------SGYIASWLVKLLLQRGYTVKATVRDP 38 (322)
T ss_pred CCCEEEEECC------------------hHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 5788999875 68899999999999999999887654
No 159
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=92.41 E-value=0.24 Score=44.76 Aligned_cols=37 Identities=19% Similarity=0.190 Sum_probs=31.8
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
+||+||||.| +|..|.++|+.|+++|++|+.+.|...
T Consensus 3 ~~k~ilItGa------------------tG~IG~~l~~~L~~~G~~V~~~~r~~~ 39 (349)
T TIGR02622 3 QGKKVLVTGH------------------TGFKGSWLSLWLLELGAEVYGYSLDPP 39 (349)
T ss_pred CCCEEEEECC------------------CChhHHHHHHHHHHCCCEEEEEeCCCc
Confidence 6788999976 688899999999999999998876543
No 160
>PLN02583 cinnamoyl-CoA reductase
Probab=92.37 E-value=0.25 Score=43.90 Aligned_cols=35 Identities=26% Similarity=0.424 Sum_probs=30.9
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.+++||||.| ||..|..+++.|+++||.|+.+.|.
T Consensus 5 ~~k~vlVTGa------------------tG~IG~~lv~~Ll~~G~~V~~~~R~ 39 (297)
T PLN02583 5 SSKSVCVMDA------------------SGYVGFWLVKRLLSRGYTVHAAVQK 39 (297)
T ss_pred CCCEEEEECC------------------CCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 5778999876 6899999999999999999998874
No 161
>PRK09072 short chain dehydrogenase; Provisional
Probab=92.22 E-value=0.26 Score=42.32 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=30.6
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.++++|||.| +|..|.++|+.|+++||.|+.+.|..
T Consensus 4 ~~~~vlItG~------------------s~~iG~~ia~~l~~~G~~V~~~~r~~ 39 (263)
T PRK09072 4 KDKRVLLTGA------------------SGGIGQALAEALAAAGARLLLVGRNA 39 (263)
T ss_pred CCCEEEEECC------------------CchHHHHHHHHHHHCCCEEEEEECCH
Confidence 5778888865 46789999999999999999998763
No 162
>PRK08703 short chain dehydrogenase; Provisional
Probab=92.14 E-value=0.3 Score=41.27 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=31.2
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
+.+|+++||.|. |..|.++|+.|+++|+.|+++.|..
T Consensus 4 l~~k~vlItG~s------------------ggiG~~la~~l~~~g~~V~~~~r~~ 40 (239)
T PRK08703 4 LSDKTILVTGAS------------------QGLGEQVAKAYAAAGATVILVARHQ 40 (239)
T ss_pred CCCCEEEEECCC------------------CcHHHHHHHHHHHcCCEEEEEeCCh
Confidence 367889999653 6889999999999999999988753
No 163
>PRK12828 short chain dehydrogenase; Provisional
Probab=92.13 E-value=0.28 Score=40.78 Aligned_cols=36 Identities=28% Similarity=0.333 Sum_probs=30.6
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.++|.+|||.| ||..|..+|+.|+++||.|+.+.|.
T Consensus 5 ~~~k~vlItGa------------------tg~iG~~la~~l~~~G~~v~~~~r~ 40 (239)
T PRK12828 5 LQGKVVAITGG------------------FGGLGRATAAWLAARGARVALIGRG 40 (239)
T ss_pred CCCCEEEEECC------------------CCcHhHHHHHHHHHCCCeEEEEeCC
Confidence 36788888865 5677999999999999999999874
No 164
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=92.13 E-value=0.76 Score=42.78 Aligned_cols=37 Identities=30% Similarity=0.384 Sum_probs=30.7
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
.+++||||.+ ||--|..|++.+|+|||.|.=.-|...
T Consensus 5 ~~~~VcVTGA------------------sGfIgswivk~LL~rGY~V~gtVR~~~ 41 (327)
T KOG1502|consen 5 EGKKVCVTGA------------------SGFIGSWIVKLLLSRGYTVRGTVRDPE 41 (327)
T ss_pred CCcEEEEeCC------------------chHHHHHHHHHHHhCCCEEEEEEcCcc
Confidence 5788999865 688999999999999999877666543
No 165
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=92.08 E-value=0.29 Score=43.89 Aligned_cols=37 Identities=38% Similarity=0.522 Sum_probs=32.4
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.++++||||.| ||..|.+++++++++||.|+.+.|..
T Consensus 4 ~~~~~vlVTGa------------------tGfiG~~l~~~L~~~G~~V~~~~r~~ 40 (340)
T PLN02653 4 PPRKVALITGI------------------TGQDGSYLTEFLLSKGYEVHGIIRRS 40 (340)
T ss_pred CCCCEEEEECC------------------CCccHHHHHHHHHHCCCEEEEEeccc
Confidence 46789999976 68899999999999999999988764
No 166
>PRK06483 dihydromonapterin reductase; Provisional
Probab=92.02 E-value=0.28 Score=41.38 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=22.9
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
+|..|.++|+.|+++|+.|+++.|..
T Consensus 11 s~gIG~~ia~~l~~~G~~V~~~~r~~ 36 (236)
T PRK06483 11 GQRIGLALAWHLLAQGQPVIVSYRTH 36 (236)
T ss_pred CChHHHHHHHHHHHCCCeEEEEeCCc
Confidence 37789999999999999999988754
No 167
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=91.97 E-value=0.29 Score=41.81 Aligned_cols=34 Identities=32% Similarity=0.358 Sum_probs=28.7
Q ss_pred CceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 43 ~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+|.+|||.|+ |..|.++|++|+++||.|+++.|.
T Consensus 2 ~k~ilItG~~------------------~~IG~~la~~l~~~g~~vi~~~r~ 35 (259)
T PRK12384 2 NQVAVVIGGG------------------QTLGAFLCHGLAEEGYRVAVADIN 35 (259)
T ss_pred CCEEEEECCC------------------cHHHHHHHHHHHHCCCEEEEEECC
Confidence 4678888764 678999999999999999999865
No 168
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=91.84 E-value=3.1 Score=39.74 Aligned_cols=66 Identities=12% Similarity=0.122 Sum_probs=41.8
Q ss_pred HHhhhccCCCCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHH--HHHHHHHCCC
Q 027330 9 IESFFDSAPPLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAA--STEHLIKMGY 86 (225)
Q Consensus 9 ~~~ff~~~~~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~--iAe~fl~~G~ 86 (225)
+..|.-.+--|..-++-+..--+++..+......+|++|||.|++ ..|.+ +|++| ..|+
T Consensus 7 ~rg~i~~~~hp~gc~~~v~~qi~~~~~~~~~~~ggK~aLVTGaSs------------------GIGlA~~IA~al-~~GA 67 (398)
T PRK13656 7 IRGFICTTAHPVGCEANVKEQIEYVKAQGPIANGPKKVLVIGASS------------------GYGLASRIAAAF-GAGA 67 (398)
T ss_pred ccceeECCCCCHHHHHHHHHHHHHHHhcCCcCCCCCEEEEECCCc------------------hHhHHHHHHHHH-HcCC
Confidence 344555555555433333333345554422224679999998753 46888 89999 9999
Q ss_pred EEEEEee
Q 027330 87 AVIFLYR 93 (225)
Q Consensus 87 ~Vi~l~r 93 (225)
+|+.+++
T Consensus 68 ~Vi~v~~ 74 (398)
T PRK13656 68 DTLGVFF 74 (398)
T ss_pred eEEEEec
Confidence 9998874
No 169
>PRK06057 short chain dehydrogenase; Provisional
Probab=91.79 E-value=0.33 Score=41.51 Aligned_cols=36 Identities=31% Similarity=0.325 Sum_probs=30.6
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..|++|+||.|. |..|.++|++|+++|+.|+.+.|.
T Consensus 5 ~~~~~vlItGas------------------ggIG~~~a~~l~~~G~~v~~~~r~ 40 (255)
T PRK06057 5 LAGRVAVITGGG------------------SGIGLATARRLAAEGATVVVGDID 40 (255)
T ss_pred CCCCEEEEECCC------------------chHHHHHHHHHHHcCCEEEEEeCC
Confidence 367888988763 778999999999999999998764
No 170
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=91.71 E-value=0.33 Score=43.13 Aligned_cols=37 Identities=30% Similarity=0.340 Sum_probs=31.9
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
.|++||||.| ||..|..++++|+++||.|+.+.|..+
T Consensus 4 ~~~~vlVTGa------------------tG~iG~~l~~~L~~~g~~V~~~~r~~~ 40 (322)
T PLN02986 4 GGKLVCVTGA------------------SGYIASWIVKLLLLRGYTVKATVRDLT 40 (322)
T ss_pred CCCEEEEECC------------------CcHHHHHHHHHHHHCCCEEEEEECCCc
Confidence 6788999875 799999999999999999998877543
No 171
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.70 E-value=0.44 Score=43.84 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=29.3
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEe
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLY 92 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~ 92 (225)
-.|++||||.|| +..|.++|.+|++||+.+.+.-
T Consensus 36 v~g~~vLITGgg------------------~GlGr~ialefa~rg~~~vl~D 69 (300)
T KOG1201|consen 36 VSGEIVLITGGG------------------SGLGRLIALEFAKRGAKLVLWD 69 (300)
T ss_pred ccCCEEEEeCCC------------------chHHHHHHHHHHHhCCeEEEEe
Confidence 489999999997 4679999999999999766655
No 172
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.62 E-value=0.36 Score=40.48 Aligned_cols=36 Identities=19% Similarity=0.107 Sum_probs=31.0
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.+++|+||.| +|..|.++|+.|+++|+.|+.+.|..
T Consensus 4 ~~~~vlItGa------------------~g~iG~~~a~~l~~~G~~V~~~~r~~ 39 (238)
T PRK05786 4 KGKKVAIIGV------------------SEGLGYAVAYFALKEGAQVCINSRNE 39 (238)
T ss_pred CCcEEEEECC------------------CchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 6788888876 47889999999999999999998754
No 173
>PLN02780 ketoreductase/ oxidoreductase
Probab=91.59 E-value=0.29 Score=44.41 Aligned_cols=36 Identities=19% Similarity=0.189 Sum_probs=30.6
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.|+.++||.| ||..|.++|++|+++|++|+++.|..
T Consensus 52 ~g~~~lITGA------------------s~GIG~alA~~La~~G~~Vil~~R~~ 87 (320)
T PLN02780 52 YGSWALVTGP------------------TDGIGKGFAFQLARKGLNLVLVARNP 87 (320)
T ss_pred cCCEEEEeCC------------------CcHHHHHHHHHHHHCCCCEEEEECCH
Confidence 5788888865 36789999999999999999998753
No 174
>PRK07069 short chain dehydrogenase; Validated
Probab=91.40 E-value=0.76 Score=38.73 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=22.3
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+|..|.++|+.|+++||.|+++.|.
T Consensus 8 ~~~iG~~~a~~l~~~G~~v~~~~r~ 32 (251)
T PRK07069 8 AGGLGRAIARRMAEQGAKVFLTDIN 32 (251)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 5678999999999999999988865
No 175
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.38 E-value=0.38 Score=40.37 Aligned_cols=37 Identities=14% Similarity=0.142 Sum_probs=30.8
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
+.+|+++||.|+ |..|.++|+.|+++|+.|+.+.|..
T Consensus 3 l~~k~~lVtGas------------------~~iG~~ia~~l~~~G~~v~~~~r~~ 39 (235)
T PRK06550 3 FMTKTVLITGAA------------------SGIGLAQARAFLAQGAQVYGVDKQD 39 (235)
T ss_pred CCCCEEEEcCCC------------------chHHHHHHHHHHHCCCEEEEEeCCc
Confidence 367888888653 6789999999999999999988764
No 176
>PRK06125 short chain dehydrogenase; Provisional
Probab=91.35 E-value=0.4 Score=41.05 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=30.7
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.++|++|||.|+ |..|.++|+.|+++|+.|+++.|.
T Consensus 5 ~~~k~vlItG~~------------------~giG~~ia~~l~~~G~~V~~~~r~ 40 (259)
T PRK06125 5 LAGKRVLITGAS------------------KGIGAAAAEAFAAEGCHLHLVARD 40 (259)
T ss_pred CCCCEEEEeCCC------------------chHHHHHHHHHHHcCCEEEEEeCC
Confidence 367888888764 668999999999999999999865
No 177
>PRK12742 oxidoreductase; Provisional
Probab=91.17 E-value=0.44 Score=39.90 Aligned_cols=36 Identities=31% Similarity=0.300 Sum_probs=29.9
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..+|+||||.| +|..|.++|+.|+++|+.|+++.+.
T Consensus 4 ~~~k~vlItGa------------------sggIG~~~a~~l~~~G~~v~~~~~~ 39 (237)
T PRK12742 4 FTGKKVLVLGG------------------SRGIGAAIVRRFVTDGANVRFTYAG 39 (237)
T ss_pred CCCCEEEEECC------------------CChHHHHHHHHHHHCCCEEEEecCC
Confidence 36789999965 4778999999999999999887653
No 178
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=91.12 E-value=0.43 Score=43.30 Aligned_cols=36 Identities=22% Similarity=0.129 Sum_probs=32.3
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+++|+||||.| ||-.|..++++|+++||+|+.+-+.
T Consensus 13 ~~~~~vlVtGa------------------tGfiG~~lv~~L~~~g~~V~~~d~~ 48 (348)
T PRK15181 13 LAPKRWLITGV------------------AGFIGSGLLEELLFLNQTVIGLDNF 48 (348)
T ss_pred ccCCEEEEECC------------------ccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 57899999976 7999999999999999999988764
No 179
>PRK05993 short chain dehydrogenase; Provisional
Probab=91.00 E-value=0.4 Score=41.85 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=23.2
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
||..|.++|+.|+++|+.|+.+.|..
T Consensus 13 sggiG~~la~~l~~~G~~Vi~~~r~~ 38 (277)
T PRK05993 13 SSGIGAYCARALQSDGWRVFATCRKE 38 (277)
T ss_pred CcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 57889999999999999999998753
No 180
>PRK07831 short chain dehydrogenase; Provisional
Probab=90.91 E-value=0.44 Score=40.90 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=29.5
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccc-hhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSG-HRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG-~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..+|++|||.| +| ..|.++|+.|+++|+.|+++.+.
T Consensus 15 ~~~k~vlItG~------------------sg~gIG~~ia~~l~~~G~~V~~~~~~ 51 (262)
T PRK07831 15 LAGKVVLVTAA------------------AGTGIGSATARRALEEGARVVISDIH 51 (262)
T ss_pred cCCCEEEEECC------------------CcccHHHHHHHHHHHcCCEEEEEeCC
Confidence 36789999976 33 57999999999999999887653
No 181
>PRK08324 short chain dehydrogenase; Validated
Probab=90.88 E-value=1.7 Score=43.66 Aligned_cols=37 Identities=27% Similarity=0.287 Sum_probs=30.9
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
..||+||||.|+ |..|.++|+.|+++|+.|+.+.|..
T Consensus 420 l~gk~vLVTGas------------------ggIG~~la~~L~~~Ga~Vvl~~r~~ 456 (681)
T PRK08324 420 LAGKVALVTGAA------------------GGIGKATAKRLAAEGACVVLADLDE 456 (681)
T ss_pred CCCCEEEEecCC------------------CHHHHHHHHHHHHCcCEEEEEeCCH
Confidence 367889988653 6789999999999999999988653
No 182
>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=90.86 E-value=0.48 Score=40.11 Aligned_cols=38 Identities=29% Similarity=0.312 Sum_probs=32.1
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
..+++++||.|+. ..|.++|+.|+++|+.|+++.+...
T Consensus 3 ~~~~~ilITGas~------------------GiG~aia~~l~~~G~~v~~~~~~~~ 40 (251)
T COG1028 3 LSGKVALVTGASS------------------GIGRAIARALAREGARVVVAARRSE 40 (251)
T ss_pred CCCCEEEEeCCCC------------------HHHHHHHHHHHHCCCeEEEEcCCCc
Confidence 3688999998753 6899999999999999999987654
No 183
>PLN02686 cinnamoyl-CoA reductase
Probab=90.84 E-value=0.42 Score=44.05 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=23.3
Q ss_pred CccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 68 FSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 68 fSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
=.+|..|..+++.|+++||.|+.+.+.
T Consensus 60 GatGfIG~~lv~~L~~~G~~V~~~~r~ 86 (367)
T PLN02686 60 GGVSFLGLAIVDRLLRHGYSVRIAVDT 86 (367)
T ss_pred CCchHHHHHHHHHHHHCCCEEEEEeCC
Confidence 346899999999999999999887664
No 184
>PRK07904 short chain dehydrogenase; Provisional
Probab=90.82 E-value=0.46 Score=41.11 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=30.4
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCC-CEEEEEeecC
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMG-YAVIFLYRRG 95 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G-~~Vi~l~r~~ 95 (225)
++++|+||.|. |..|.++|++|+++| +.|+++.|..
T Consensus 7 ~~~~vlItGas------------------~giG~~la~~l~~~gg~~V~~~~r~~ 43 (253)
T PRK07904 7 NPQTILLLGGT------------------SEIGLAICERYLKNAPARVVLAALPD 43 (253)
T ss_pred CCcEEEEEcCC------------------cHHHHHHHHHHHhcCCCeEEEEeCCc
Confidence 67889998774 788999999999995 9999987654
No 185
>PLN00198 anthocyanidin reductase; Provisional
Probab=90.80 E-value=0.47 Score=42.53 Aligned_cols=37 Identities=30% Similarity=0.471 Sum_probs=31.3
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
..+++||||.| +|.-|..+|++++++||.|+.+.|..
T Consensus 7 ~~~~~vlItG~------------------~GfIG~~l~~~L~~~g~~V~~~~r~~ 43 (338)
T PLN00198 7 TGKKTACVIGG------------------TGFLASLLIKLLLQKGYAVNTTVRDP 43 (338)
T ss_pred CCCCeEEEECC------------------chHHHHHHHHHHHHCCCEEEEEECCC
Confidence 35778888876 68899999999999999998887664
No 186
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.68 E-value=0.44 Score=43.18 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=30.1
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEe
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLY 92 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~ 92 (225)
+.||++|||.||. +...|.++|+.|+++||.|++..
T Consensus 6 ~~gk~alITGa~~----------------~~GIG~a~A~~la~~Ga~Vvv~~ 41 (299)
T PRK06300 6 LTGKIAFIAGIGD----------------DQGYGWGIAKALAEAGATILVGT 41 (299)
T ss_pred CCCCEEEEeCCCC----------------CCCHHHHHHHHHHHCCCEEEEEe
Confidence 4899999999872 23569999999999999998854
No 187
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=90.63 E-value=1.7 Score=39.23 Aligned_cols=37 Identities=30% Similarity=0.477 Sum_probs=30.7
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
.++.+|||. .|+.-|.++|+.|+++||+|+++.|...
T Consensus 5 ~~~~~lITG------------------ASsGIG~~~A~~lA~~g~~liLvaR~~~ 41 (265)
T COG0300 5 KGKTALITG------------------ASSGIGAELAKQLARRGYNLILVARRED 41 (265)
T ss_pred CCcEEEEEC------------------CCchHHHHHHHHHHHCCCEEEEEeCcHH
Confidence 567788875 3566799999999999999999998743
No 188
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.45 E-value=1.6 Score=39.75 Aligned_cols=37 Identities=32% Similarity=0.386 Sum_probs=30.9
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
+.||+|+||. -|||- |.++|-+++++|+.++++.|..
T Consensus 10 ~~~kvVvITG-----------------ASsGI-G~~lA~~la~~G~~l~lvar~~ 46 (282)
T KOG1205|consen 10 LAGKVVLITG-----------------ASSGI-GEALAYELAKRGAKLVLVARRA 46 (282)
T ss_pred hCCCEEEEeC-----------------CCcHH-HHHHHHHHHhCCCceEEeehhh
Confidence 4788888885 46665 9999999999999999988764
No 189
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=90.34 E-value=0.49 Score=42.01 Aligned_cols=36 Identities=28% Similarity=0.347 Sum_probs=30.7
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.+|+||||.| +|..|..+|+.|+++||.|+.+.|..
T Consensus 4 ~~k~vlVtG~------------------~G~IG~~l~~~L~~~G~~V~~~~r~~ 39 (325)
T PLN02989 4 GGKVVCVTGA------------------SGYIASWIVKLLLFRGYTINATVRDP 39 (325)
T ss_pred CCCEEEEECC------------------chHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 5789999965 38899999999999999998877653
No 190
>PRK08177 short chain dehydrogenase; Provisional
Probab=90.20 E-value=0.51 Score=39.61 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=23.5
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
+|..|.++|+.|+++||.|+.+.|..
T Consensus 10 sg~iG~~la~~l~~~G~~V~~~~r~~ 35 (225)
T PRK08177 10 SRGLGLGLVDRLLERGWQVTATVRGP 35 (225)
T ss_pred CchHHHHHHHHHHhCCCEEEEEeCCC
Confidence 48899999999999999999998764
No 191
>PLN00016 RNA-binding protein; Provisional
Probab=90.07 E-value=0.43 Score=43.92 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=25.4
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
.||..|..++++|+++||.|+.+.|...
T Consensus 64 atG~iG~~lv~~L~~~G~~V~~l~R~~~ 91 (378)
T PLN00016 64 GHAFIGFYLAKELVKAGHEVTLFTRGKE 91 (378)
T ss_pred CceeEhHHHHHHHHHCCCEEEEEecCCc
Confidence 4799999999999999999999998754
No 192
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=89.72 E-value=0.36 Score=44.56 Aligned_cols=39 Identities=13% Similarity=0.166 Sum_probs=34.6
Q ss_pred ceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 44 ~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
|+|+||+|||-=-|= .|.++|+++.++||+|.|+.++..
T Consensus 2 ~~i~~~~GGTGGHi~--------------Pala~a~~l~~~g~~v~~vg~~~~ 40 (352)
T PRK12446 2 KKIVFTGGGSAGHVT--------------PNLAIIPYLKEDNWDISYIGSHQG 40 (352)
T ss_pred CeEEEEcCCcHHHHH--------------HHHHHHHHHHhCCCEEEEEECCCc
Confidence 579999999988777 489999999999999999987764
No 193
>PRK05599 hypothetical protein; Provisional
Probab=89.68 E-value=4.9 Score=34.39 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=19.7
Q ss_pred chhHHHHHHHHHHCCCEEEEEeec
Q 027330 71 GHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 71 G~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+..|.++|+.|+ .|+.|+++.|.
T Consensus 10 ~GIG~aia~~l~-~g~~Vil~~r~ 32 (246)
T PRK05599 10 SDIAGEIATLLC-HGEDVVLAARR 32 (246)
T ss_pred cHHHHHHHHHHh-CCCEEEEEeCC
Confidence 567999999998 59999998764
No 194
>PLN02572 UDP-sulfoquinovose synthase
Probab=89.64 E-value=0.55 Score=44.69 Aligned_cols=35 Identities=31% Similarity=0.454 Sum_probs=30.8
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEee
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r 93 (225)
.++++||||.| ||..|..++++|+++||+|+.+.+
T Consensus 45 ~~~k~VLVTGa------------------tGfIGs~Lv~~L~~~G~~V~~~d~ 79 (442)
T PLN02572 45 SKKKKVMVIGG------------------DGYCGWATALHLSKRGYEVAIVDN 79 (442)
T ss_pred ccCCEEEEECC------------------CcHHHHHHHHHHHHCCCeEEEEec
Confidence 57899999965 699999999999999999998753
No 195
>PRK05650 short chain dehydrogenase; Provisional
Probab=89.60 E-value=3.2 Score=35.75 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=22.8
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.||..|.++|+.|+++|+.|+++.|.
T Consensus 8 asggIG~~la~~l~~~g~~V~~~~r~ 33 (270)
T PRK05650 8 AASGLGRAIALRWAREGWRLALADVN 33 (270)
T ss_pred CCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 46788999999999999999988754
No 196
>PRK08263 short chain dehydrogenase; Provisional
Probab=89.57 E-value=0.66 Score=40.25 Aligned_cols=26 Identities=31% Similarity=0.198 Sum_probs=23.3
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
||..|..+|++|+++|+.|+.+.|+.
T Consensus 12 sg~iG~~~a~~l~~~g~~V~~~~r~~ 37 (275)
T PRK08263 12 SRGFGRAWTEAALERGDRVVATARDT 37 (275)
T ss_pred CChHHHHHHHHHHHCCCEEEEEECCH
Confidence 48899999999999999999998764
No 197
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=89.52 E-value=0.79 Score=42.38 Aligned_cols=105 Identities=23% Similarity=0.325 Sum_probs=66.1
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeecCCCCCCccCCCCcccchhhhcccCCceEeeCcchHHHHHHH-HHHHHHhhcCccc
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAI-RDHHAAVAGGLLL 148 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~~s~~P~~~~l~~~~~~~~l~~~~~~~i~v~~~~~~~~~~a~-~~~~~~~~~~~ll 148 (225)
|..-|.+.|++|++||.+|.+|.|.-+. ++ ++.+.+ ++|. .+-+.+
T Consensus 58 TDGIGKayA~eLAkrG~nvvLIsRt~~K------------L~------------------~v~kEI~~~~~---vev~~i 104 (312)
T KOG1014|consen 58 TDGIGKAYARELAKRGFNVVLISRTQEK------------LE------------------AVAKEIEEKYK---VEVRII 104 (312)
T ss_pred CCcchHHHHHHHHHcCCEEEEEeCCHHH------------HH------------------HHHHHHHHHhC---cEEEEE
Confidence 4578999999999999999999975331 22 123333 3333 345899
Q ss_pred ccccccHHH-HHHHHHHHHHHhhccCCcceEEEeecccCccCCCCCcCCCcccc--CCCceeEEEeeChhH
Q 027330 149 KLPFTTIFE-YLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMVTIHESI--LHTCSSFVLLRLHFM 216 (225)
Q Consensus 149 ~i~F~t~~e-Yl~~L~~i~~~l~~~~~~~~~~lAAAVSDf~vp~~~~~e~KI~s--~~~~~~l~L~~~p~i 216 (225)
.+||+.-.+ |-..++. ++.. +-.+++.++..+=.+ | +.. +|++. ..+-+.+.+....++
T Consensus 105 ~~Dft~~~~~ye~i~~~----l~~~-~VgILVNNvG~~~~~-P-~~f--~~~~~~~~~~ii~vN~~~~~~~ 166 (312)
T KOG1014|consen 105 AIDFTKGDEVYEKLLEK----LAGL-DVGILVNNVGMSYDY-P-ESF--LKYPEGELQNIINVNILSVTLL 166 (312)
T ss_pred EEecCCCchhHHHHHHH----hcCC-ceEEEEecccccCCC-c-HHH--HhCchhhhhheeEEecchHHHH
Confidence 999998876 7555554 4332 356888888887666 4 333 44443 223356666554443
No 198
>PRK09291 short chain dehydrogenase; Provisional
Probab=89.50 E-value=0.66 Score=39.35 Aligned_cols=25 Identities=20% Similarity=0.094 Sum_probs=22.4
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
||..|.++|++|+++|+.|+.+.|.
T Consensus 11 sg~iG~~ia~~l~~~G~~v~~~~r~ 35 (257)
T PRK09291 11 GSGFGREVALRLARKGHNVIAGVQI 35 (257)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4788999999999999999988774
No 199
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=89.48 E-value=0.63 Score=42.12 Aligned_cols=35 Identities=29% Similarity=0.419 Sum_probs=30.8
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.+++||||.| +|.-|..+|++|+++||.|+.+.+.
T Consensus 9 ~~~~vLVtG~------------------~GfIG~~l~~~L~~~G~~V~~~~r~ 43 (353)
T PLN02896 9 ATGTYCVTGA------------------TGYIGSWLVKLLLQRGYTVHATLRD 43 (353)
T ss_pred CCCEEEEECC------------------CcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 6889999965 5889999999999999999988764
No 200
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=89.37 E-value=2.9 Score=35.28 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=23.0
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.+|..|.++|++|+++|+.|+++.|.
T Consensus 8 ~sg~iG~~la~~l~~~G~~v~~~~r~ 33 (254)
T TIGR02415 8 GAQGIGKGIAERLAKDGFAVAVADLN 33 (254)
T ss_pred CCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 46788999999999999999988764
No 201
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=89.32 E-value=0.47 Score=38.34 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=26.3
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
.||..|..++++++++|++|+.+.|..+
T Consensus 6 atG~vG~~l~~~L~~~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 6 ATGFVGRALAKQLLRRGHEVTALVRSPS 33 (183)
T ss_dssp TTSHHHHHHHHHHHHTTSEEEEEESSGG
T ss_pred CCChHHHHHHHHHHHCCCEEEEEecCch
Confidence 5899999999999999999999999866
No 202
>PLN02240 UDP-glucose 4-epimerase
Probab=89.30 E-value=0.76 Score=41.12 Aligned_cols=36 Identities=28% Similarity=0.389 Sum_probs=30.6
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..+++||||.| ||..|..++++|+++|+.|+.+.+.
T Consensus 3 ~~~~~vlItGa------------------tG~iG~~l~~~L~~~g~~V~~~~~~ 38 (352)
T PLN02240 3 LMGRTILVTGG------------------AGYIGSHTVLQLLLAGYKVVVIDNL 38 (352)
T ss_pred CCCCEEEEECC------------------CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 46788999854 4889999999999999999999753
No 203
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=89.29 E-value=1.3 Score=39.64 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=22.8
Q ss_pred ccchhHHHHHHHHHHCC--CEEEEEeecC
Q 027330 69 SSGHRGAASTEHLIKMG--YAVIFLYRRG 95 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G--~~Vi~l~r~~ 95 (225)
.+|-.|..|+++|+++| +.|..+.+..
T Consensus 5 gsGflG~~iv~~Ll~~g~~~~Vr~~d~~~ 33 (280)
T PF01073_consen 5 GSGFLGSHIVRQLLERGYIYEVRVLDRSP 33 (280)
T ss_pred CCcHHHHHHHHHHHHCCCceEEEEccccc
Confidence 47999999999999999 7887776543
No 204
>PRK07832 short chain dehydrogenase; Provisional
Probab=89.28 E-value=4 Score=35.23 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=21.9
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
||..|.++|+.|+++|+.|+++.|.
T Consensus 9 s~giG~~la~~la~~G~~vv~~~r~ 33 (272)
T PRK07832 9 ASGIGRATALRLAAQGAELFLTDRD 33 (272)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5678999999999999999888754
No 205
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=89.18 E-value=0.63 Score=41.88 Aligned_cols=26 Identities=38% Similarity=0.598 Sum_probs=23.7
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
||-.|..++++++++|+.|+.+.|..
T Consensus 9 tGfIG~~l~~~L~~~G~~V~~~~r~~ 34 (343)
T TIGR01472 9 TGQDGSYLAEFLLEKGYEVHGLIRRS 34 (343)
T ss_pred CCcHHHHHHHHHHHCCCEEEEEecCC
Confidence 68999999999999999999988764
No 206
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=89.15 E-value=3.3 Score=34.59 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.1
Q ss_pred cchhHHHHHHHHHHCCCEEEEEee
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYR 93 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r 93 (225)
+|..|.++++.|+++|+.|+++.+
T Consensus 10 ~g~iG~~l~~~l~~~g~~v~~~~~ 33 (247)
T PRK09730 10 SRGIGRATALLLAQEGYTVAVNYQ 33 (247)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeC
Confidence 578899999999999999987653
No 207
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=89.11 E-value=4.1 Score=33.77 Aligned_cols=27 Identities=37% Similarity=0.393 Sum_probs=23.6
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.+|..|..+|+.|+++||.|+.+.|+.
T Consensus 6 ~~g~iG~~la~~l~~~G~~v~~~~r~~ 32 (239)
T TIGR01830 6 ASRGIGRAIALKLAKEGAKVIITYRSS 32 (239)
T ss_pred CCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 467789999999999999999998753
No 208
>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]
Probab=89.04 E-value=1.1 Score=41.47 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=27.5
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeecCCCCC
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRRGTCEP 99 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~~s~~P 99 (225)
=||.=|+-+|+.+++.||.|.=+.|+.|..-
T Consensus 10 ITGQDGsYLa~lLLekGY~VhGi~Rrss~~n 40 (345)
T COG1089 10 ITGQDGSYLAELLLEKGYEVHGIKRRSSSFN 40 (345)
T ss_pred ccCCchHHHHHHHHhcCcEEEEEeeccccCC
Confidence 3799999999999999999999999977543
No 209
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=89.03 E-value=3 Score=35.93 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=21.6
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+|..|.++|+.|+++|+.|+++.++
T Consensus 10 s~gIG~~~a~~l~~~G~~V~~~~~~ 34 (267)
T TIGR02685 10 AKRIGSSIAVALHQEGYRVVLHYHR 34 (267)
T ss_pred CCcHHHHHHHHHHhCCCeEEEEcCC
Confidence 3568999999999999999988654
No 210
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=89.02 E-value=3.9 Score=31.57 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=20.2
Q ss_pred ccchhHHHHHHHHHHCCCE-EEEEeec
Q 027330 69 SSGHRGAASTEHLIKMGYA-VIFLYRR 94 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~-Vi~l~r~ 94 (225)
.+|..|.++|++|+++|+. |+++.|.
T Consensus 8 a~~~iG~~~~~~l~~~g~~~v~~~~r~ 34 (180)
T smart00822 8 GLGGLGLELARWLAERGARHLVLLSRS 34 (180)
T ss_pred CCChHHHHHHHHHHHhhCCeEEEEeCC
Confidence 3578999999999999975 6666543
No 211
>PLN02650 dihydroflavonol-4-reductase
Probab=88.91 E-value=0.72 Score=41.63 Aligned_cols=36 Identities=31% Similarity=0.453 Sum_probs=30.9
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
..|+||||.| ||..|..++++|+++|+.|+.+.|..
T Consensus 4 ~~k~iLVTGa------------------tGfIGs~l~~~L~~~G~~V~~~~r~~ 39 (351)
T PLN02650 4 QKETVCVTGA------------------SGFIGSWLVMRLLERGYTVRATVRDP 39 (351)
T ss_pred CCCEEEEeCC------------------cHHHHHHHHHHHHHCCCEEEEEEcCc
Confidence 4678899876 69999999999999999999887653
No 212
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=88.83 E-value=2 Score=38.21 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.3
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.+|..|..++++|+++| .|+.+.+.
T Consensus 8 ~~GfiGs~l~~~L~~~g-~V~~~~~~ 32 (299)
T PRK09987 8 KTGQVGWELQRALAPLG-NLIALDVH 32 (299)
T ss_pred CCCHHHHHHHHHhhccC-CEEEeccc
Confidence 37999999999999999 68877654
No 213
>PLN02214 cinnamoyl-CoA reductase
Probab=88.66 E-value=0.8 Score=41.61 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=30.9
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
++++||||.| ||..|..++++|+++||.|+.+.|..
T Consensus 9 ~~~~vlVTGa------------------tGfIG~~l~~~L~~~G~~V~~~~r~~ 44 (342)
T PLN02214 9 AGKTVCVTGA------------------GGYIASWIVKILLERGYTVKGTVRNP 44 (342)
T ss_pred CCCEEEEECC------------------CcHHHHHHHHHHHHCcCEEEEEeCCc
Confidence 5678888865 68899999999999999999988753
No 214
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=88.65 E-value=2.3 Score=37.24 Aligned_cols=28 Identities=29% Similarity=0.404 Sum_probs=24.9
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
++|..|..+|+.|+++||.|+.+.|...
T Consensus 8 ~~G~iG~~l~~~L~~~g~~V~~~~r~~~ 35 (328)
T TIGR03466 8 ATGFVGSAVVRLLLEQGEEVRVLVRPTS 35 (328)
T ss_pred CccchhHHHHHHHHHCCCEEEEEEecCc
Confidence 4688999999999999999999998644
No 215
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=88.61 E-value=0.73 Score=41.91 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=28.6
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEE
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIF 90 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~ 90 (225)
++||++|||.|.+ |+ ..|.++|+.|+++|+.|++
T Consensus 7 l~gk~alITGa~~---------------s~-GIG~a~A~~la~~Ga~Vv~ 40 (303)
T PLN02730 7 LRGKRAFIAGVAD---------------DN-GYGWAIAKALAAAGAEILV 40 (303)
T ss_pred CCCCEEEEeCCCC---------------CC-cHHHHHHHHHHHCCCEEEE
Confidence 5899999998742 23 3599999999999999998
No 216
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=88.60 E-value=0.77 Score=42.90 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=31.8
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
.+++||||.| ||..|..++++++++||.|+.+.|..+
T Consensus 59 ~~~kVLVtGa------------------tG~IG~~l~~~Ll~~G~~V~~l~R~~~ 95 (390)
T PLN02657 59 KDVTVLVVGA------------------TGYIGKFVVRELVRRGYNVVAVAREKS 95 (390)
T ss_pred CCCEEEEECC------------------CcHHHHHHHHHHHHCCCEEEEEEechh
Confidence 6778888854 689999999999999999999998754
No 217
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=88.47 E-value=0.76 Score=45.82 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=23.5
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
+|..|.+++++|+++||.|+.+.|..
T Consensus 89 TGgIG~aLAr~LLk~G~~Vval~Rn~ 114 (576)
T PLN03209 89 TGKVGSRTVRELLKLGFRVRAGVRSA 114 (576)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 68899999999999999999988754
No 218
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=88.42 E-value=0.84 Score=43.44 Aligned_cols=37 Identities=27% Similarity=0.283 Sum_probs=30.7
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.+||+|+||.| ||..|.++|++++++|+.|+.+.|..
T Consensus 176 l~gK~VLITGA------------------SgGIG~aLA~~La~~G~~Vi~l~r~~ 212 (406)
T PRK07424 176 LKGKTVAVTGA------------------SGTLGQALLKELHQQGAKVVALTSNS 212 (406)
T ss_pred CCCCEEEEeCC------------------CCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 36777887755 48899999999999999999998754
No 219
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=87.79 E-value=2.8 Score=35.17 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=22.6
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
||..|.++|+.|+++|++|+++.++.
T Consensus 7 s~giG~~~a~~l~~~G~~v~~~~~~~ 32 (239)
T TIGR01831 7 SRGIGRAIANRLAADGFEICVHYHSG 32 (239)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCCC
Confidence 56779999999999999999888653
No 220
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=87.36 E-value=1.1 Score=41.42 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=32.4
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
..+|+||||.| ||.-|..++++|+++||.|+.+.|..
T Consensus 19 ~~~~~IlVtGg------------------tGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 19 SEKLRICITGA------------------GGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCCEEEEECC------------------ccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 36789999955 68999999999999999999998754
No 221
>PRK07060 short chain dehydrogenase; Provisional
Probab=87.35 E-value=1.2 Score=37.31 Aligned_cols=36 Identities=25% Similarity=0.242 Sum_probs=30.2
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.+++++||.| +|..|..+|+.|+++|+.|+.+.|..
T Consensus 8 ~~~~~lItGa------------------~g~iG~~~a~~l~~~g~~V~~~~r~~ 43 (245)
T PRK07060 8 SGKSVLVTGA------------------SSGIGRACAVALAQRGARVVAAARNA 43 (245)
T ss_pred CCCEEEEeCC------------------cchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 6788888865 46789999999999999999988753
No 222
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=87.26 E-value=5.3 Score=33.30 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=23.2
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
+|..|.++|+.|+++|+.|+.+.|..
T Consensus 11 s~~iG~~la~~l~~~g~~vi~~~r~~ 36 (245)
T PRK12824 11 KRGIGSAIARELLNDGYRVIATYFSG 36 (245)
T ss_pred CchHHHHHHHHHHHcCCEEEEEeCCc
Confidence 67889999999999999999998763
No 223
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=87.10 E-value=0.44 Score=36.93 Aligned_cols=35 Identities=20% Similarity=0.090 Sum_probs=26.3
Q ss_pred EEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 46 ACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 46 vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
|+|+++||.=-+- | ..++|+++.+||++|.+...+
T Consensus 1 Ili~~~Gt~Ghv~--P------------~lala~~L~~rGh~V~~~~~~ 35 (139)
T PF03033_consen 1 ILIATGGTRGHVY--P------------FLALARALRRRGHEVRLATPP 35 (139)
T ss_dssp EEEEEESSHHHHH--H------------HHHHHHHHHHTT-EEEEEETG
T ss_pred CEEEEcCChhHHH--H------------HHHHHHHHhccCCeEEEeecc
Confidence 5677777766665 3 689999999999999977744
No 224
>PLN02206 UDP-glucuronate decarboxylase
Probab=86.72 E-value=1.1 Score=42.68 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=26.1
Q ss_pred eEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 63 RYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 63 RfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
|.+=-=.||--|..++++++++|++|+.+.+.
T Consensus 121 kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~ 152 (442)
T PLN02206 121 RVVVTGGAGFVGSHLVDRLMARGDSVIVVDNF 152 (442)
T ss_pred EEEEECcccHHHHHHHHHHHHCcCEEEEEeCC
Confidence 34444568999999999999999999988653
No 225
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=86.25 E-value=0.74 Score=40.08 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=29.1
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeecCCCCCC
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRRGTCEPY 100 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~~s~~P~ 100 (225)
.||+-|..|++++++||++|+-|-|..+..+-
T Consensus 8 AsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~ 39 (211)
T COG2910 8 ASGKAGSRILKEALKRGHEVTAIVRNASKLAA 39 (211)
T ss_pred cCchhHHHHHHHHHhCCCeeEEEEeChHhccc
Confidence 58999999999999999999999999887654
No 226
>PRK08267 short chain dehydrogenase; Provisional
Probab=86.23 E-value=1.3 Score=37.87 Aligned_cols=26 Identities=15% Similarity=0.069 Sum_probs=23.0
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.||..|.++|++++++|+.|+.+.|.
T Consensus 9 asg~iG~~la~~l~~~G~~V~~~~r~ 34 (260)
T PRK08267 9 AASGIGRATALLFAAEGWRVGAYDIN 34 (260)
T ss_pred CCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 36788999999999999999998765
No 227
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=86.00 E-value=1.2 Score=39.76 Aligned_cols=38 Identities=32% Similarity=0.277 Sum_probs=32.2
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
+.||+++||.|++ ..|.++|+.|++.|+.|+...|...
T Consensus 6 l~gkvalVTG~s~------------------GIG~aia~~la~~Ga~v~i~~r~~~ 43 (270)
T KOG0725|consen 6 LAGKVALVTGGSS------------------GIGKAIALLLAKAGAKVVITGRSEE 43 (270)
T ss_pred CCCcEEEEECCCC------------------hHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 5899999998753 3589999999999999999888643
No 228
>PLN02778 3,5-epimerase/4-reductase
Probab=85.95 E-value=1.3 Score=39.62 Aligned_cols=33 Identities=9% Similarity=-0.006 Sum_probs=28.5
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEe
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLY 92 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~ 92 (225)
..++||||.| +|..|..++++|+++|+.|++..
T Consensus 8 ~~~kiLVtG~------------------tGfiG~~l~~~L~~~g~~V~~~~ 40 (298)
T PLN02778 8 ATLKFLIYGK------------------TGWIGGLLGKLCQEQGIDFHYGS 40 (298)
T ss_pred CCCeEEEECC------------------CCHHHHHHHHHHHhCCCEEEEec
Confidence 4578999976 69999999999999999998654
No 229
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=84.53 E-value=1.6 Score=39.24 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=29.4
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCC--CEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMG--YAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G--~~Vi~l~r~ 94 (225)
.||+||||.| +|..|.++|+.|+++| +.|+.+.|.
T Consensus 3 ~~k~vLVTGa------------------tG~IG~~l~~~L~~~g~~~~V~~~~r~ 39 (324)
T TIGR03589 3 NNKSILITGG------------------TGSFGKAFISRLLENYNPKKIIIYSRD 39 (324)
T ss_pred CCCEEEEeCC------------------CCHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 5788999876 4788999999999987 789888764
No 230
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=84.34 E-value=1.1 Score=37.54 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=21.5
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+|.||..||-.|+..|+.|+++-..
T Consensus 7 aG~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 7 AGTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp -SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred CCHHHHHHHHHHHhCCCcEEEEECC
Confidence 5999999999999999999998754
No 231
>PRK06924 short chain dehydrogenase; Provisional
Probab=84.12 E-value=1.2 Score=37.60 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=23.9
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.+|..|.++|++|+++||+|+.+.|..
T Consensus 9 asggiG~~ia~~l~~~g~~V~~~~r~~ 35 (251)
T PRK06924 9 TSQGLGEAIANQLLEKGTHVISISRTE 35 (251)
T ss_pred CCchHHHHHHHHHHhcCCEEEEEeCCc
Confidence 367899999999999999999998764
No 232
>PLN00015 protochlorophyllide reductase
Probab=83.72 E-value=6.2 Score=35.13 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=22.3
Q ss_pred ccchhHHHHHHHHHHCC-CEEEEEeec
Q 027330 69 SSGHRGAASTEHLIKMG-YAVIFLYRR 94 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G-~~Vi~l~r~ 94 (225)
.||..|.++|++|+++| +.|+++.|.
T Consensus 5 as~GIG~aia~~l~~~G~~~V~~~~r~ 31 (308)
T PLN00015 5 ASSGLGLATAKALAETGKWHVVMACRD 31 (308)
T ss_pred CCChHHHHHHHHHHHCCCCEEEEEeCC
Confidence 35778999999999999 999888754
No 233
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=83.51 E-value=2.4 Score=40.97 Aligned_cols=56 Identities=16% Similarity=0.205 Sum_probs=48.3
Q ss_pred CceEEEecCceee-----ecCCCCeeEEecCc---------------cchhHHHHHHHHHHCCCEEEEEeecCCCCCC
Q 027330 43 RRVACVTSGGTTV-----PLEQRCVRYIDNFS---------------SGHRGAASTEHLIKMGYAVIFLYRRGTCEPY 100 (225)
Q Consensus 43 ~~~vlITSGgT~e-----pID~~~VRfI~NfS---------------SG~~Ga~iAe~fl~~G~~Vi~l~r~~s~~P~ 100 (225)
.+.++|.+|+... ++| ..|+++|.. .|--|.++|..|.+.|.+|++|.+...+.|.
T Consensus 136 a~~iiIATGS~p~~~~~~~~~--~~~~~~s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~ 211 (454)
T COG1249 136 ADNIIIATGSRPRIPPGPGID--GARILDSSDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG 211 (454)
T ss_pred eCEEEEcCCCCCcCCCCCCCC--CCeEEechhhcccccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc
Confidence 4789999999865 466 889998854 6889999999999999999999999888884
No 234
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=83.00 E-value=2 Score=40.94 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=26.0
Q ss_pred eEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 63 RYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 63 RfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
|.+=-=.||.-|..++++++++||+|+.+.+.
T Consensus 122 kILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~ 153 (436)
T PLN02166 122 RIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNF 153 (436)
T ss_pred EEEEECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 33333458999999999999999999998764
No 235
>PLN02427 UDP-apiose/xylose synthase
Probab=82.78 E-value=2.3 Score=39.06 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=31.4
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHC-CCEEEEEeecC
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKM-GYAVIFLYRRG 95 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~-G~~Vi~l~r~~ 95 (225)
.+.++||||.| ||..|..+++.|+++ |+.|+.+.+..
T Consensus 12 ~~~~~VlVTGg------------------tGfIGs~lv~~L~~~~g~~V~~l~r~~ 49 (386)
T PLN02427 12 IKPLTICMIGA------------------GGFIGSHLCEKLMTETPHKVLALDVYN 49 (386)
T ss_pred ccCcEEEEECC------------------cchHHHHHHHHHHhcCCCEEEEEecCc
Confidence 36678999976 699999999999998 59999887653
No 236
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=82.77 E-value=1.9 Score=38.76 Aligned_cols=26 Identities=15% Similarity=0.264 Sum_probs=21.6
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.||..|.++|+.|+++|+.|+.+.++
T Consensus 9 atGfIG~~l~~~L~~~g~~~v~~~~~ 34 (355)
T PRK10217 9 GAGFIGSALVRYIINETSDAVVVVDK 34 (355)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEEec
Confidence 37899999999999999987765543
No 237
>PRK07041 short chain dehydrogenase; Provisional
Probab=82.65 E-value=1.6 Score=36.43 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=23.9
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.||..|.++|+.|+++|+.|+++.|+
T Consensus 5 as~~iG~~~a~~l~~~G~~v~~~~r~ 30 (230)
T PRK07041 5 GSSGIGLALARAFAAEGARVTIASRS 30 (230)
T ss_pred CCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 56889999999999999999999876
No 238
>PRK06101 short chain dehydrogenase; Provisional
Probab=82.65 E-value=1.5 Score=37.13 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=23.4
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.||..|.++|+.|+++|++|+.+.|.
T Consensus 9 as~giG~~la~~L~~~G~~V~~~~r~ 34 (240)
T PRK06101 9 ATSGIGKQLALDYAKQGWQVIACGRN 34 (240)
T ss_pred CCcHHHHHHHHHHHhCCCEEEEEECC
Confidence 36788999999999999999999875
No 239
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=82.61 E-value=2.8 Score=37.31 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=23.3
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
++|..|.+++++|.++|+.|+-+.|+
T Consensus 8 asG~lG~~l~~~l~~~~~~v~~~~r~ 33 (286)
T PF04321_consen 8 ASGFLGSALARALKERGYEVIATSRS 33 (286)
T ss_dssp TTSHHHHHHHHHHTTTSEEEEEESTT
T ss_pred CCCHHHHHHHHHHhhCCCEEEEeCch
Confidence 58999999999999999999888655
No 240
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=82.57 E-value=1.7 Score=38.52 Aligned_cols=38 Identities=29% Similarity=0.391 Sum_probs=30.6
Q ss_pred ceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 44 ~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
|+++|++||+.-.+. ....+|++|.++|++|+++.++.
T Consensus 1 ~~i~~~~g~~~g~~~--------------~~~~La~~L~~~g~eV~vv~~~~ 38 (348)
T TIGR01133 1 KKVVLAAGGTGGHIF--------------PALAVAEELIKRGVEVLWLGTKR 38 (348)
T ss_pred CeEEEEeCccHHHHh--------------HHHHHHHHHHhCCCEEEEEeCCC
Confidence 478899999876665 22479999999999999998754
No 241
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=82.31 E-value=2.8 Score=29.88 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=26.0
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeecCCCCC
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRRGTCEP 99 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~~s~~P 99 (225)
.|--|..+|.++..+|.+|++|++.....|
T Consensus 7 gG~ig~E~A~~l~~~g~~vtli~~~~~~~~ 36 (80)
T PF00070_consen 7 GGFIGIELAEALAELGKEVTLIERSDRLLP 36 (80)
T ss_dssp SSHHHHHHHHHHHHTTSEEEEEESSSSSST
T ss_pred cCHHHHHHHHHHHHhCcEEEEEeccchhhh
Confidence 477799999999999999999998876554
No 242
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=81.31 E-value=2.3 Score=31.04 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=22.9
Q ss_pred ccchhHHHHHHHHHHCC---CEEEEEeec
Q 027330 69 SSGHRGAASTEHLIKMG---YAVIFLYRR 94 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G---~~Vi~l~r~ 94 (225)
-+|.||.++++.+++.| .+|++++.+
T Consensus 6 G~G~mg~al~~~l~~~g~~~~~v~~~~~r 34 (96)
T PF03807_consen 6 GAGNMGSALARGLLASGIKPHEVIIVSSR 34 (96)
T ss_dssp STSHHHHHHHHHHHHTTS-GGEEEEEEES
T ss_pred CCCHHHHHHHHHHHHCCCCceeEEeeccC
Confidence 47999999999999999 999988543
No 243
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=80.86 E-value=2.5 Score=42.24 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=31.6
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHC-CCEEEEEeecCC
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKM-GYAVIFLYRRGT 96 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~-G~~Vi~l~r~~s 96 (225)
++++||||.| ||-.|..++++++++ ||+|+.+.|...
T Consensus 314 ~~~~VLVTGa------------------tGFIGs~Lv~~Ll~~~g~~V~~l~r~~~ 351 (660)
T PRK08125 314 RRTRVLILGV------------------NGFIGNHLTERLLRDDNYEVYGLDIGSD 351 (660)
T ss_pred cCCEEEEECC------------------CchHHHHHHHHHHhCCCcEEEEEeCCch
Confidence 6778888876 799999999999985 799999987653
No 244
>PRK07578 short chain dehydrogenase; Provisional
Probab=79.77 E-value=6.3 Score=32.26 Aligned_cols=26 Identities=35% Similarity=0.276 Sum_probs=22.4
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.+|..|.++|+.|+++ +.|+.+.|+.
T Consensus 8 as~giG~~la~~l~~~-~~vi~~~r~~ 33 (199)
T PRK07578 8 ASGTIGRAVVAELSKR-HEVITAGRSS 33 (199)
T ss_pred CCcHHHHHHHHHHHhc-CcEEEEecCC
Confidence 4678999999999999 9999988753
No 245
>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila. A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.
Probab=79.59 E-value=2.5 Score=36.52 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=23.4
Q ss_pred ccchhHHHHHHHHHHCCC--EEEEEeecCC
Q 027330 69 SSGHRGAASTEHLIKMGY--AVIFLYRRGT 96 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~--~Vi~l~r~~s 96 (225)
+||-.|..+.+.+++.+. .|+.|.|..+
T Consensus 4 aTGflG~~ll~~Ll~~~~~~~I~cLvR~~~ 33 (249)
T PF07993_consen 4 ATGFLGSHLLEELLRQPPDVKIYCLVRASS 33 (249)
T ss_dssp TTSHHHHHHHHHHHHHS-TTEEEEEE-SSS
T ss_pred CCcHHHHHHHHHHHcCCCCcEEEEEEeCcc
Confidence 699999999999999887 8999998754
No 246
>PRK07334 threonine dehydratase; Provisional
Probab=79.52 E-value=17 Score=34.28 Aligned_cols=101 Identities=14% Similarity=0.123 Sum_probs=53.5
Q ss_pred CccchhHHHHHHHHHHCCCEEEEEeecCCCCCCccCCCCcccchhhhcccCCceEeeCcchHHHHHHHHHHHHHhhcCcc
Q 027330 68 FSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGLL 147 (225)
Q Consensus 68 fSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s~~P~~~~l~~~~~~~~l~~~~~~~i~v~~~~~~~~~~a~~~~~~~~~~~~l 147 (225)
.|+|..|.++|-++...|+.++.+...+. |. .-.+.++.- +..|.+.+....+..+..+.+.+ ..+..
T Consensus 77 aSsGN~g~alA~~a~~~G~~~~iv~p~~~--~~-------~k~~~~~~~-GA~v~~~~~~~~~~~~~a~~l~~--~~~~~ 144 (403)
T PRK07334 77 MSAGNHAQGVAYHAQRLGIPATIVMPRFT--PT-------VKVERTRGF-GAEVVLHGETLDEARAHARELAE--EEGLT 144 (403)
T ss_pred ECCcHHHHHHHHHHHHcCCCEEEEECCCC--CH-------HHHHHHHHc-CCEEEEECcCHHHHHHHHHHHHH--hcCCE
Confidence 68999999999999999999988875442 21 111222221 23344444333332333333322 34667
Q ss_pred cccccccHHHHHHHHHHHH-HHhhccCCcceEEEe
Q 027330 148 LKLPFTTIFEYLQMLQMIA-VSSRSLGPCSMFYLA 181 (225)
Q Consensus 148 l~i~F~t~~eYl~~L~~i~-~~l~~~~~~~~~~lA 181 (225)
+..||....-. ....-++ +.++.++..|.++.+
T Consensus 145 ~~~~~~~~~~~-~g~~t~~~Ei~~q~~~~d~vv~~ 178 (403)
T PRK07334 145 FVHPYDDPAVI-AGQGTVALEMLEDAPDLDTLVVP 178 (403)
T ss_pred ecCCCCCHHHH-HhHHHHHHHHHhcCCCCCEEEEe
Confidence 77888654322 2222222 223444445666554
No 247
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=79.21 E-value=2.9 Score=34.66 Aligned_cols=30 Identities=37% Similarity=0.534 Sum_probs=26.3
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeecCCCC
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRRGTCE 98 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~~s~~ 98 (225)
.||-.|.+++++|+++|+.|+.+.+.....
T Consensus 6 atG~iG~~l~~~l~~~g~~v~~~~~~~~~~ 35 (236)
T PF01370_consen 6 ATGFIGSALVRQLLKKGHEVIVLSRSSNSE 35 (236)
T ss_dssp TTSHHHHHHHHHHHHTTTEEEEEESCSTGG
T ss_pred cCCHHHHHHHHHHHHcCCcccccccccccc
Confidence 589999999999999999999888776543
No 248
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=79.14 E-value=2.4 Score=36.01 Aligned_cols=26 Identities=31% Similarity=0.347 Sum_probs=23.0
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.||.-|.++|++|++.|+.|+.+.|.
T Consensus 8 asg~iG~~la~~l~~~G~~V~~~~r~ 33 (248)
T PRK10538 8 ATAGFGECITRRFIQQGHKVIATGRR 33 (248)
T ss_pred CCchHHHHHHHHHHHCCCEEEEEECC
Confidence 35778999999999999999998875
No 249
>PLN02970 serine racemase
Probab=78.77 E-value=13 Score=34.09 Aligned_cols=78 Identities=17% Similarity=0.242 Sum_probs=45.2
Q ss_pred EEecCccchhHHHHHHHHHHCCCEEEEEeecCCCCCCccCCCCcccchhhhcccCCceEeeCcchHHHHHHHHHHHHHhh
Q 027330 64 YIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVA 143 (225)
Q Consensus 64 fI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s~~P~~~~l~~~~~~~~l~~~~~~~i~v~~~~~~~~~~a~~~~~~~~~ 143 (225)
+|+ .|+|..|.++|-++..+|+.++.+-.+.. |. ...+.++.- +..+...+.......+..+.+.+ +
T Consensus 78 vv~-aSsGN~g~alA~~a~~~G~~~~ivvp~~~--~~-------~k~~~~~~~-GA~Vi~~~~~~~~~~~~a~~la~--~ 144 (328)
T PLN02970 78 VVT-HSSGNHAAALALAAKLRGIPAYIVVPKNA--PA-------CKVDAVIRY-GGIITWCEPTVESREAVAARVQQ--E 144 (328)
T ss_pred EEE-ECCcHHHHHHHHHHHHcCCCEEEEECCCC--CH-------HHHHHHHhc-CCEEEEeCCCHHHHHHHHHHHHH--h
Confidence 344 69999999999999999999988875542 21 112222221 22343333333333333444332 3
Q ss_pred cCccccccccc
Q 027330 144 GGLLLKLPFTT 154 (225)
Q Consensus 144 ~~~ll~i~F~t 154 (225)
.+..+..+|..
T Consensus 145 ~g~~~~~~~~n 155 (328)
T PLN02970 145 TGAVLIHPYND 155 (328)
T ss_pred cCCEEeCCCCC
Confidence 46677778854
No 250
>PRK07023 short chain dehydrogenase; Provisional
Probab=78.46 E-value=2.7 Score=35.50 Aligned_cols=27 Identities=37% Similarity=0.376 Sum_probs=23.8
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.||..|.++|++|+++|+.|+.+.|..
T Consensus 9 asggiG~~ia~~l~~~G~~v~~~~r~~ 35 (243)
T PRK07023 9 HSRGLGAALAEQLLQPGIAVLGVARSR 35 (243)
T ss_pred CCcchHHHHHHHHHhCCCEEEEEecCc
Confidence 468889999999999999999998754
No 251
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=78.34 E-value=2.5 Score=36.86 Aligned_cols=28 Identities=11% Similarity=0.170 Sum_probs=25.9
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
.||..|..++++++++|+.|+.+.|..+
T Consensus 7 atG~iG~~vv~~L~~~g~~V~~~~R~~~ 34 (285)
T TIGR03649 7 GTGKTASRIARLLQAASVPFLVASRSSS 34 (285)
T ss_pred CCChHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 6899999999999999999999998764
No 252
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=77.48 E-value=0.12 Score=48.99 Aligned_cols=122 Identities=16% Similarity=0.071 Sum_probs=74.2
Q ss_pred CceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecCCCCCCccCCCCcccchhhhcccCCceE
Q 027330 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQ 122 (225)
Q Consensus 43 ~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s~~P~~~~l~~~~~~~~l~~~~~~~i~ 122 (225)
...++|+|++|...|.+..+++.||++|+..+++.++.++.-+.++.+.+.+-...+..+.-+ .+...++.. .+...
T Consensus 79 ~adl~lvaPaTan~i~Kla~g~aD~~~t~~~~a~~~p~~~aPamn~~M~~~~~tq~n~~~l~~--~g~~~I~p~-~~~~a 155 (392)
T COG0452 79 WADLLLVAPATANTIAKLAVGIADNLSTTTLLAAKAPLVLAPAMNVIMYTHPATQENLQRLKS--EGVLFIEPI-EGELA 155 (392)
T ss_pred ccCEEEecCCChhHHHHHHHhhhccHHHHHHHHhcCcEEEecCcCHHHhhCHHHHHHHHHHHH--CCcEEECcc-ccccc
Confidence 358999999999999999999999999999999999887778888877776544333211100 000000000 00000
Q ss_pred ----ee-CcchHHHHHHHHHHHHHhhcCcccccccccHHHHHHHHHHHHH
Q 027330 123 ----VC-QPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAV 167 (225)
Q Consensus 123 ----v~-~~~~~~~~~a~~~~~~~~~~~~ll~i~F~t~~eYl~~L~~i~~ 167 (225)
-. .+..+.+..+.+.+...-..|...+++.....||+.-.+.|+.
T Consensus 156 ~~g~g~~~e~~~Iv~~~~~~~~~~~l~gk~Vlit~G~t~E~idpvr~itn 205 (392)
T COG0452 156 DVGDGRLAEPEEIVEAALALLKTPDLKGKKVLITAGPTREYIDPVRFISN 205 (392)
T ss_pred ccccccCCCHHHHHHHHHhhcccccccCcEEEecCCCCccCCccceeeec
Confidence 00 1112223333333333234577788888888888877776554
No 253
>PRK06940 short chain dehydrogenase; Provisional
Probab=77.43 E-value=16 Score=31.88 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHCCCEEEEEeec
Q 027330 72 HRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 72 ~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..|.++|+.|. +|+.|+++.|.
T Consensus 12 gIG~~la~~l~-~G~~Vv~~~r~ 33 (275)
T PRK06940 12 GIGQAIARRVG-AGKKVLLADYN 33 (275)
T ss_pred hHHHHHHHHHh-CCCEEEEEeCC
Confidence 47999999996 89999998764
No 254
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=76.98 E-value=3.4 Score=37.12 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=27.7
Q ss_pred CeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 61 CVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 61 ~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+++-|.--=.|.||..||..|+.+|+.|+++-+.
T Consensus 4 ~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~ 37 (286)
T PRK07819 4 AIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETT 37 (286)
T ss_pred CccEEEEEcccHHHHHHHHHHHhCCCEEEEEECC
Confidence 4444555567999999999999999999998754
No 255
>PRK05884 short chain dehydrogenase; Provisional
Probab=76.87 E-value=3.1 Score=35.18 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=22.5
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+|..|.++|+.|+++|+.|+++.|.
T Consensus 9 s~giG~~ia~~l~~~g~~v~~~~r~ 33 (223)
T PRK05884 9 DTDLGRTIAEGFRNDGHKVTLVGAR 33 (223)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4779999999999999999998765
No 256
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=76.72 E-value=2.7 Score=36.31 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=23.6
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+||..|..++++|+++||+|+.+.|.
T Consensus 7 ~tG~iG~~l~~~l~~~g~~v~~~~r~ 32 (287)
T TIGR01214 7 ANGQLGRELVQQLSPEGRVVVALTSS 32 (287)
T ss_pred CCCHHHHHHHHHHHhcCCEEEEeCCc
Confidence 35999999999999999999999875
No 257
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=76.51 E-value=9.9 Score=35.69 Aligned_cols=53 Identities=19% Similarity=0.236 Sum_probs=46.2
Q ss_pred CceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecCCCCCC
Q 027330 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPY 100 (225)
Q Consensus 43 ~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s~~P~ 100 (225)
+.+++||+|-| .|..=.|.|+-+=.++-.+++++..+|++|.||++-...-|+
T Consensus 18 ~~~~~v~tgi~-----psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~l 70 (353)
T cd00674 18 KEKYVVASGIS-----PSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRL 70 (353)
T ss_pred CCeEEEecCCC-----CCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcc
Confidence 35799999996 358889999999999999999999999999999998877553
No 258
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.52 E-value=5.2 Score=35.95 Aligned_cols=32 Identities=34% Similarity=0.360 Sum_probs=27.3
Q ss_pred EecCccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 65 IDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 65 I~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
|+--|+|.-|.++|.+|.+.||.|.--.|..+
T Consensus 12 Itgcs~GGIG~ala~ef~~~G~~V~AtaR~~e 43 (289)
T KOG1209|consen 12 ITGCSSGGIGYALAKEFARNGYLVYATARRLE 43 (289)
T ss_pred EeecCCcchhHHHHHHHHhCCeEEEEEccccc
Confidence 33458999999999999999999998887754
No 259
>PRK07048 serine/threonine dehydratase; Validated
Probab=75.46 E-value=15 Score=33.37 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=25.4
Q ss_pred CccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 68 FSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 68 fSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.|+|..|.++|-+....|+.++.+....
T Consensus 78 aSsGN~g~alA~~a~~~G~~~~vvvp~~ 105 (321)
T PRK07048 78 FSSGNHAQAIALSARLLGIPATIVMPQD 105 (321)
T ss_pred eCCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 7899999999999999999999888654
No 260
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=75.24 E-value=5.2 Score=35.58 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=30.8
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
..|.-||||.|++- -|.++|+.|.+.|-.||.--|.-
T Consensus 3 ~tgnTiLITGG~sG------------------IGl~lak~f~elgN~VIi~gR~e 39 (245)
T COG3967 3 TTGNTILITGGASG------------------IGLALAKRFLELGNTVIICGRNE 39 (245)
T ss_pred ccCcEEEEeCCcch------------------hhHHHHHHHHHhCCEEEEecCcH
Confidence 46889999999863 48999999999999998766653
No 261
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=75.16 E-value=3.3 Score=36.35 Aligned_cols=28 Identities=36% Similarity=0.453 Sum_probs=24.9
Q ss_pred CccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 68 FSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 68 fSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.-+|.+|.++|..|.+.|++|++-.|+.
T Consensus 7 ~GtGniG~alA~~~a~ag~eV~igs~r~ 34 (211)
T COG2085 7 IGTGNIGSALALRLAKAGHEVIIGSSRG 34 (211)
T ss_pred eccChHHHHHHHHHHhCCCeEEEecCCC
Confidence 4589999999999999999999987664
No 262
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=75.03 E-value=11 Score=36.90 Aligned_cols=68 Identities=13% Similarity=0.116 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecCCCCCC
Q 027330 21 DRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPY 100 (225)
Q Consensus 21 ~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s~~P~ 100 (225)
..+++++.|.+ +.. .+..++|++|-| .|..=.|.|+-.=.++-.+++++..+|++|.||++....-|+
T Consensus 7 W~~~~A~~~~~---r~~----~~~~~~~~~g~~-----psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~l 74 (510)
T PRK00750 7 WADEEAEKIIK---RLG----KKPPVVVETGIG-----PSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGL 74 (510)
T ss_pred ChHHHHHHHHH---hcC----CCCcEEEEeCCC-----CCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcc
Confidence 45666666554 322 333599999985 568889999999999999999999999999999998766554
No 263
>CHL00194 ycf39 Ycf39; Provisional
Probab=74.91 E-value=3.6 Score=36.75 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=25.2
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
.||..|..++++++++||.|+.+.|..+
T Consensus 8 atG~iG~~lv~~Ll~~g~~V~~l~R~~~ 35 (317)
T CHL00194 8 ATGTLGRQIVRQALDEGYQVRCLVRNLR 35 (317)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEEcChH
Confidence 4899999999999999999999998743
No 264
>PRK06849 hypothetical protein; Provisional
Probab=74.32 E-value=5.6 Score=36.78 Aligned_cols=35 Identities=14% Similarity=0.157 Sum_probs=30.2
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+.|+||||.|++. -|..+|+.|.++|+.|+++...
T Consensus 3 ~~~~VLI~G~~~~------------------~~l~iar~l~~~G~~Vi~~d~~ 37 (389)
T PRK06849 3 TKKTVLITGARAP------------------AALELARLFHNAGHTVILADSL 37 (389)
T ss_pred CCCEEEEeCCCcH------------------HHHHHHHHHHHCCCEEEEEeCC
Confidence 5789999998876 3788999999999999999765
No 265
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=74.08 E-value=4.3 Score=33.08 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=21.3
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.|.||..+|..|+++||.|+...|.
T Consensus 9 lG~mG~~~a~~L~~~g~~v~~~d~~ 33 (163)
T PF03446_consen 9 LGNMGSAMARNLAKAGYEVTVYDRS 33 (163)
T ss_dssp -SHHHHHHHHHHHHTTTEEEEEESS
T ss_pred hHHHHHHHHHHHHhcCCeEEeeccc
Confidence 5999999999999999999876544
No 266
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=73.99 E-value=4.5 Score=35.81 Aligned_cols=38 Identities=26% Similarity=0.276 Sum_probs=28.6
Q ss_pred eEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 45 VACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 45 ~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
+|+|++|||--.+- +...+|++|.++||+|+++++...
T Consensus 1 ~~~~~~~~~gG~~~--------------~~~~la~~l~~~G~ev~v~~~~~~ 38 (350)
T cd03785 1 RILIAGGGTGGHIF--------------PALALAEELRERGAEVLFLGTKRG 38 (350)
T ss_pred CEEEEecCchhhhh--------------HHHHHHHHHHhCCCEEEEEECCCc
Confidence 46777777754433 345789999999999999987654
No 267
>PRK06382 threonine dehydratase; Provisional
Probab=73.74 E-value=26 Score=33.02 Aligned_cols=77 Identities=10% Similarity=-0.018 Sum_probs=45.1
Q ss_pred CccchhHHHHHHHHHHCCCEEEEEeecCCCCCCccCCCCcccchhhhcccCCceEeeCcchHHHHHHHHHHHHHhhcCcc
Q 027330 68 FSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGLL 147 (225)
Q Consensus 68 fSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s~~P~~~~l~~~~~~~~l~~~~~~~i~v~~~~~~~~~~a~~~~~~~~~~~~l 147 (225)
.|+|..|.++|-++...|+.++++...+. |.. -.+.++. -+..|.+.+...++..+..+.+.+ ..+..
T Consensus 79 aSsGN~g~a~A~aa~~~G~~~~ivmp~~~--~~~-------k~~~~~~-~GA~Vv~~~~~~~~a~~~a~~la~--~~~~~ 146 (406)
T PRK06382 79 ASAGNHAQGVAYAASINGIDAKIVMPEYT--IPQ-------KVNAVEA-YGAHVILTGRDYDEAHRYADKIAM--DENRT 146 (406)
T ss_pred ECCCHHHHHHHHHHHHcCCCEEEEEcCCC--HHH-------HHHHHHH-cCCEEEEECCCHHHHHHHHHHHHH--hcCCE
Confidence 79999999999999999999998885543 211 1122211 123344444333333333333322 34677
Q ss_pred cccccccHH
Q 027330 148 LKLPFTTIF 156 (225)
Q Consensus 148 l~i~F~t~~ 156 (225)
++.||....
T Consensus 147 ~v~~~~~~~ 155 (406)
T PRK06382 147 FIEAFNDRW 155 (406)
T ss_pred ecCccCChH
Confidence 888887543
No 268
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.60 E-value=6.2 Score=37.01 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=28.4
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
++|+|+|+.|| +.|.++|+.|+++||+|+++...
T Consensus 4 ~~k~v~iiG~g-------------------~~G~~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 4 KGKKVLVVGAG-------------------VSGLALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred CCCEEEEECCC-------------------HHHHHHHHHHHHCCCEEEEEeCC
Confidence 67888888664 35889999999999999998765
No 269
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=73.55 E-value=26 Score=40.99 Aligned_cols=38 Identities=16% Similarity=-0.009 Sum_probs=29.2
Q ss_pred ecCCCCeeEEecCccchhHHHHHHHHHHC-CCEEEEEeec
Q 027330 56 PLEQRCVRYIDNFSSGHRGAASTEHLIKM-GYAVIFLYRR 94 (225)
Q Consensus 56 pID~~~VRfI~NfSSG~~Ga~iAe~fl~~-G~~Vi~l~r~ 94 (225)
+|+.+.|=.||=- +|..|+++|++|+++ |+.|+++.|.
T Consensus 1993 ~l~~g~vvLVTGG-arGIG~aiA~~LA~~~ga~viL~gRs 2031 (2582)
T TIGR02813 1993 ALNSDDVFLVTGG-AKGVTFECALELAKQCQAHFILAGRS 2031 (2582)
T ss_pred ccCCCCEEEEeCC-CCHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4666667677744 456799999999998 6999888765
No 270
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=73.36 E-value=5.7 Score=35.72 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=22.3
Q ss_pred cchhHHHHHHHHHHC-CCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKM-GYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~-G~~Vi~l~r~ 94 (225)
||.-|..++++|+++ ||+|+.+.|.
T Consensus 10 tGfiGs~l~~~L~~~~~~~V~~~~r~ 35 (347)
T PRK11908 10 NGFIGHHLSKRILETTDWEVYGMDMQ 35 (347)
T ss_pred CcHHHHHHHHHHHhCCCCeEEEEeCc
Confidence 799999999999986 7999998764
No 271
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=73.30 E-value=4.9 Score=34.49 Aligned_cols=28 Identities=36% Similarity=0.406 Sum_probs=25.6
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
+||.-|..++.+|+++||+|+.+.|...
T Consensus 6 atG~iG~~l~~~L~~~g~~V~~~~r~~~ 33 (292)
T TIGR01777 6 GTGFIGRALTQRLTKDGHEVTILTRSPP 33 (292)
T ss_pred ccchhhHHHHHHHHHcCCEEEEEeCCCC
Confidence 5899999999999999999999998754
No 272
>PRK08017 oxidoreductase; Provisional
Probab=73.17 E-value=4.3 Score=34.29 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.9
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
||..|.++|+.|+++|+.|+.+.|..
T Consensus 11 sg~IG~~la~~l~~~g~~v~~~~r~~ 36 (256)
T PRK08017 11 SSGIGLEAALELKRRGYRVLAACRKP 36 (256)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 47889999999999999999988753
No 273
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=73.08 E-value=4.3 Score=34.82 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=30.6
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.+++|+||.| ||..|..++++++.+||.|+.+.|..
T Consensus 16 ~~~~ilItGa------------------sG~iG~~l~~~L~~~g~~V~~~~R~~ 51 (251)
T PLN00141 16 KTKTVFVAGA------------------TGRTGKRIVEQLLAKGFAVKAGVRDV 51 (251)
T ss_pred cCCeEEEECC------------------CcHHHHHHHHHHHhCCCEEEEEecCH
Confidence 5678888864 68999999999999999999887754
No 274
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=72.62 E-value=4.1 Score=34.44 Aligned_cols=28 Identities=25% Similarity=0.507 Sum_probs=26.1
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
.||..|..+++++++.|+.|..++|+.+
T Consensus 6 atG~~G~~v~~~L~~~~~~V~~l~R~~~ 33 (233)
T PF05368_consen 6 ATGNQGRSVVRALLSAGFSVRALVRDPS 33 (233)
T ss_dssp TTSHHHHHHHHHHHHTTGCEEEEESSSH
T ss_pred CccHHHHHHHHHHHhCCCCcEEEEeccc
Confidence 5899999999999999999999999863
No 275
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=72.47 E-value=10 Score=34.84 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=18.4
Q ss_pred cchhHHHHHHHHHHCCCE-EEEEee
Q 027330 70 SGHRGAASTEHLIKMGYA-VIFLYR 93 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~-Vi~l~r 93 (225)
+|.-|.++++++++.|-+ ++++.+
T Consensus 7 ~GSIGseL~rql~~~~p~~lil~d~ 31 (293)
T PF02719_consen 7 GGSIGSELVRQLLRYGPKKLILFDR 31 (293)
T ss_dssp TSHHHHHHHHHHHCCB-SEEEEEES
T ss_pred ccHHHHHHHHHHHhcCCCeEEEeCC
Confidence 488999999999999864 555543
No 276
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=71.98 E-value=23 Score=30.14 Aligned_cols=49 Identities=20% Similarity=0.198 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhC-CCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEe
Q 027330 25 ISQKLKEFIALN-SSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLY 92 (225)
Q Consensus 25 i~~~l~~f~~~~-~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~ 92 (225)
+...+++.+... .....+||+++|+.. |++|..+|+.+.+.|+.|+..-
T Consensus 9 v~~~~~~~~~~~~~~~~l~gk~v~I~G~-------------------G~vG~~~A~~L~~~G~~Vvv~D 58 (200)
T cd01075 9 VFLGMKAAAEHLLGTDSLEGKTVAVQGL-------------------GKVGYKLAEHLLEEGAKLIVAD 58 (200)
T ss_pred HHHHHHHHHHHhcCCCCCCCCEEEEECC-------------------CHHHHHHHHHHHHCCCEEEEEc
Confidence 344455555432 111357888888753 6789999999999999999554
No 277
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.67 E-value=4.2 Score=37.43 Aligned_cols=56 Identities=18% Similarity=0.120 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 18 ~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
.|-.+..+.+-++.+ +.+ ..||+|.|-. -+|.||.-+|..++++||.|+..|+++.
T Consensus 139 ~PcTp~aii~lL~~~---~i~--l~Gk~V~vIG------------------~s~ivG~PmA~~L~~~gatVtv~~~~t~ 194 (301)
T PRK14194 139 TPCTPSGCLRLLEDT---CGD--LTGKHAVVIG------------------RSNIVGKPMAALLLQAHCSVTVVHSRST 194 (301)
T ss_pred CCCcHHHHHHHHHHh---CCC--CCCCEEEEEC------------------CCCccHHHHHHHHHHCCCEEEEECCCCC
Confidence 455777777766665 222 4777776632 2468999999999999999999998753
No 278
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=70.75 E-value=9.5 Score=33.74 Aligned_cols=55 Identities=22% Similarity=0.171 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 22 RAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 22 ~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+|.|....+-|+.++.--+..=..|+=|||-..+||| .|++..+.|+.||.++.-
T Consensus 86 lErieg~~~~~l~~~~i~~~DVliviSnSGrNpvpie------------------~A~~~rekGa~vI~vTSl 140 (243)
T COG4821 86 LERIEGYAKLFLHRLQIRPNDVLIVISNSGRNPVPIE------------------VAEYAREKGAKVIAVTSL 140 (243)
T ss_pred hHhhhhHHHHHHHHhcCCCCCEEEEEeCCCCCCcchH------------------HHHHHHhcCCeEEEEehh
Confidence 5666666777887754211111355668999999999 789999999999999864
No 279
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=70.47 E-value=5.4 Score=34.10 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.1
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.+|.||.++|..+.+.|++|++..|.
T Consensus 8 G~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 8 GTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 37999999999999999999988654
No 280
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=70.41 E-value=20 Score=32.28 Aligned_cols=34 Identities=32% Similarity=0.435 Sum_probs=29.5
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEe
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLY 92 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~ 92 (225)
+.||.||+|+|. |.-|.+.+++++++|..|..+-
T Consensus 3 ~tGKna~vtgga------------------gGIGl~~sk~Ll~kgik~~~i~ 36 (261)
T KOG4169|consen 3 LTGKNALVTGGA------------------GGIGLATSKALLEKGIKVLVID 36 (261)
T ss_pred ccCceEEEecCC------------------chhhHHHHHHHHHcCchheeeh
Confidence 479999999875 6679999999999999988775
No 281
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=70.38 E-value=4.7 Score=35.41 Aligned_cols=27 Identities=19% Similarity=0.221 Sum_probs=23.4
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.||..|..+|+.|+++|++|+.+.+..
T Consensus 7 a~GfiG~~l~~~L~~~g~~~v~~~~~~ 33 (308)
T PRK11150 7 GAGFIGSNIVKALNDKGITDILVVDNL 33 (308)
T ss_pred CCcHHHHHHHHHHHhCCCceEEEecCC
Confidence 479999999999999999888877653
No 282
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=70.31 E-value=30 Score=30.60 Aligned_cols=29 Identities=10% Similarity=0.129 Sum_probs=25.6
Q ss_pred CccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 68 FSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 68 fSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
.|+|.+|.++|-++...|+.++.+.....
T Consensus 71 ~ssGN~g~alA~~a~~~G~~~~ivvp~~~ 99 (304)
T cd01562 71 ASAGNHAQGVAYAAKLLGIPATIVMPETA 99 (304)
T ss_pred ECCCHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 58999999999999999999998885543
No 283
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=70.12 E-value=4.8 Score=36.24 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=23.1
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.|.||..+|..++++|+.|+++-+.
T Consensus 10 ~G~mG~~iA~~la~~G~~V~v~d~~ 34 (308)
T PRK06129 10 AGLIGRAWAIVFARAGHEVRLWDAD 34 (308)
T ss_pred ccHHHHHHHHHHHHCCCeeEEEeCC
Confidence 7999999999999999999988765
No 284
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=70.11 E-value=38 Score=30.80 Aligned_cols=29 Identities=17% Similarity=0.113 Sum_probs=25.4
Q ss_pred cCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 67 NFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 67 NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
-.|||..|.++|-++...|+.++++....
T Consensus 72 ~aSsGN~g~alA~~a~~~G~~~~v~~p~~ 100 (317)
T TIGR02991 72 AASTGNHGRALAYAAAEEGVRATICMSEL 100 (317)
T ss_pred EECCCHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 47899999999999999999998887443
No 285
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=69.85 E-value=8.5 Score=32.92 Aligned_cols=34 Identities=15% Similarity=0.305 Sum_probs=28.8
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEee
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r 93 (225)
++||+|||-.|| ..|...|+.|++.|+.|+++.+
T Consensus 8 l~~k~vLVIGgG-------------------~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 8 LSNKRVVIVGGG-------------------KVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred cCCCEEEEECCC-------------------HHHHHHHHHHHHCCCeEEEEcC
Confidence 478888887775 5799999999999999999974
No 286
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=69.82 E-value=7 Score=35.00 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=19.3
Q ss_pred cchhHHHHHHHHHHCCCEEEEEe
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLY 92 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~ 92 (225)
||..|..++++++++|+.+++..
T Consensus 9 tG~iG~~l~~~L~~~g~~~v~~~ 31 (352)
T PRK10084 9 AGFIGSAVVRHIINNTQDSVVNV 31 (352)
T ss_pred CcHHhHHHHHHHHHhCCCeEEEe
Confidence 68999999999999998755543
No 287
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=69.59 E-value=17 Score=30.00 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=20.9
Q ss_pred cchhHHHHHHHHHHCCC-EEEEEeecC
Q 027330 70 SGHRGAASTEHLIKMGY-AVIFLYRRG 95 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~-~Vi~l~r~~ 95 (225)
+|..|..+|++++.+|. .|+++.|++
T Consensus 9 ~gglg~~la~~La~~~~~~~il~~r~~ 35 (181)
T PF08659_consen 9 LGGLGQSLARWLAERGARRLILLGRSG 35 (181)
T ss_dssp TSHHHHHHHHHHHHTT-SEEEEEESSG
T ss_pred ccHHHHHHHHHHHHcCCCEEEEeccCC
Confidence 58899999999999987 577777664
No 288
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=69.41 E-value=39 Score=31.28 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=24.9
Q ss_pred CccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 68 FSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 68 fSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.|+|..|.++|-++...|+.++.+....
T Consensus 54 aSsGN~g~alA~~a~~~G~~~~iv~p~~ 81 (380)
T TIGR01127 54 ASAGNHAQGVAYAAKKFGIKAVIVMPES 81 (380)
T ss_pred ECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 5999999999999999999999887554
No 289
>PRK08198 threonine dehydratase; Provisional
Probab=68.79 E-value=39 Score=31.65 Aligned_cols=28 Identities=11% Similarity=0.121 Sum_probs=25.0
Q ss_pred CccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 68 FSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 68 fSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.|+|..|.++|-++...|+.++.+...+
T Consensus 76 aSsGN~g~alA~~a~~~G~~~~iv~p~~ 103 (404)
T PRK08198 76 ASAGNHAQGVAYAASLLGIKATIVMPET 103 (404)
T ss_pred ECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 6999999999999999999998887544
No 290
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=68.68 E-value=5.1 Score=32.55 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=24.6
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
-.|.+|.++|-.+..+|++|++..|+.
T Consensus 6 GaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 6 GAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp SSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 479999999999999999999998873
No 291
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=68.17 E-value=12 Score=33.98 Aligned_cols=43 Identities=16% Similarity=0.239 Sum_probs=30.3
Q ss_pred CceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEee
Q 027330 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (225)
Q Consensus 43 ~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r 93 (225)
.+.++|.+-...-|.. |+ -+..+|.++||+|...|++|.++.-
T Consensus 126 ~~tvvv~~t~d~~~~~----r~----~a~~~a~aiAE~fr~~G~~Vlvl~D 168 (274)
T cd01132 126 EYTIVVAATASDPAPL----QY----LAPYTGCAMGEYFMDNGKHALIIYD 168 (274)
T ss_pred ceeEEEEeCCCCchhH----HH----HHHHHHHHHHHHHHHCCCCEEEEEc
Confidence 4456666654444444 22 3456799999999999999999984
No 292
>PRK06953 short chain dehydrogenase; Provisional
Probab=67.77 E-value=6.6 Score=32.75 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=22.5
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+|..|.++|++++++|+.|+.+.+.
T Consensus 10 sg~iG~~la~~L~~~G~~v~~~~r~ 34 (222)
T PRK06953 10 SRGIGREFVRQYRADGWRVIATARD 34 (222)
T ss_pred CCchhHHHHHHHHhCCCEEEEEECC
Confidence 5778999999999999999998865
No 293
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=67.16 E-value=11 Score=31.03 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=28.8
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEe
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLY 92 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~ 92 (225)
++|++|+|-.|| +.|...|+.|++.|+.|++|.
T Consensus 11 l~~~~vlVvGGG-------------------~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 11 LHNKVVVIIGGG-------------------KIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred cCCCEEEEECCC-------------------HHHHHHHHHHHhCCCEEEEEc
Confidence 478899988875 568999999999999999995
No 294
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=67.11 E-value=7.1 Score=30.74 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=24.4
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.|-+|..+|-.|.+.|++|+++.|+.
T Consensus 6 ~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 6 AGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred cCHHHHHHHHHHHHCCCceEEEEccc
Confidence 58899999999999999999999886
No 295
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=66.56 E-value=13 Score=33.91 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=22.6
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
++|..|.+|++.+. .+++|+.+.++.
T Consensus 8 ~~GqLG~~L~~~l~-~~~~v~a~~~~~ 33 (281)
T COG1091 8 ANGQLGTELRRALP-GEFEVIATDRAE 33 (281)
T ss_pred CCChHHHHHHHHhC-CCceEEeccCcc
Confidence 57999999999998 889999987654
No 296
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=65.90 E-value=5.2 Score=36.94 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=23.0
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
-+|.||..||+.|+..||.|++.-..
T Consensus 10 GaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 10 GAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred cccchhHHHHHHHhhcCCceEEEeCC
Confidence 47999999999999988999998754
No 297
>PRK12320 hypothetical protein; Provisional
Probab=65.66 E-value=9.4 Score=39.06 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=23.6
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.+|..|..+++.++++||.|+.+.+.
T Consensus 8 AaGFIGs~La~~Ll~~G~~Vi~ldr~ 33 (699)
T PRK12320 8 ATGAVGRSVTRQLIAAGHTVSGIAQH 33 (699)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence 37999999999999999999999864
No 298
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=65.34 E-value=11 Score=33.78 Aligned_cols=38 Identities=16% Similarity=0.269 Sum_probs=31.8
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
+|...+||+||| +|..|.++|-++...|+.++.+.+..
T Consensus 54 ~g~~~vv~~g~s----------------sGN~g~alA~~a~~~G~~~~ivvp~~ 91 (311)
T TIGR01275 54 KGADTVITVGAI----------------QSNHARATALAAKKLGLDAVLVLREK 91 (311)
T ss_pred cCCCEEEEcCCc----------------hhHHHHHHHHHHHHhCCceEEEecCC
Confidence 455677787765 89999999999999999999888764
No 299
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=65.22 E-value=7.1 Score=31.10 Aligned_cols=33 Identities=24% Similarity=0.293 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecC
Q 027330 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLE 58 (225)
Q Consensus 18 ~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID 58 (225)
.|.+.++|.+.+.+.+.+. -++||+|||..-=|
T Consensus 39 v~Dd~~~i~~~l~~~~~~~--------D~VittGG~g~~~~ 71 (144)
T PF00994_consen 39 VPDDPDAIKEALRRALDRA--------DLVITTGGTGPGPD 71 (144)
T ss_dssp EESSHHHHHHHHHHHHHTT--------SEEEEESSSSSSTT
T ss_pred ECCCHHHHHHHHHhhhccC--------CEEEEcCCcCcccC
Confidence 5678999999997776432 68999999976444
No 300
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=65.19 E-value=33 Score=30.85 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=26.0
Q ss_pred CccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 68 FSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 68 fSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
.|+|..|.++|-++...|+.|+++..++.
T Consensus 76 ~SsGN~g~alA~~a~~~G~~~~ivvp~~~ 104 (324)
T cd01563 76 ASTGNTSASLAAYAARAGIKCVVFLPAGK 104 (324)
T ss_pred eCCCHHHHHHHHHHHHcCCceEEEEeCCC
Confidence 58999999999999999999999997664
No 301
>PRK06815 hypothetical protein; Provisional
Probab=65.04 E-value=42 Score=30.42 Aligned_cols=31 Identities=23% Similarity=0.170 Sum_probs=27.0
Q ss_pred EEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 64 YIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 64 fI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.|+ .|+|..|.++|-++...|+.++.+....
T Consensus 71 vv~-aSsGN~g~alA~~a~~~G~~~~i~~p~~ 101 (317)
T PRK06815 71 VIT-ASSGNHGQGVALAAKLAGIPVTVYAPEQ 101 (317)
T ss_pred EEE-ECCChHHHHHHHHHHHhCCCEEEEECCC
Confidence 456 6999999999999999999998888554
No 302
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=64.84 E-value=8.6 Score=35.49 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=26.3
Q ss_pred CeeEEecCccchhHHHHHHHHHHCCCEEEEEee
Q 027330 61 CVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (225)
Q Consensus 61 ~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r 93 (225)
+++-|.=-=+|.||+.+|..|+.+|+.|++.-.
T Consensus 6 ~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~ 38 (321)
T PRK07066 6 DIKTFAAIGSGVIGSGWVARALAHGLDVVAWDP 38 (321)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeC
Confidence 344444445899999999999999999998764
No 303
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=64.59 E-value=8.8 Score=36.39 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.6
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+..+|.++||||...|++|.++.-.
T Consensus 238 s~yta~tiAEYfrd~G~dVll~~Ds 262 (369)
T cd01134 238 SIYTGITIAEYFRDMGYNVALMADS 262 (369)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 4567999999999999999999743
No 304
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=64.54 E-value=32 Score=31.44 Aligned_cols=55 Identities=9% Similarity=0.055 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 18 ~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.|-.+..+.+-++.+ +.+ ..||+|+|-.++.. -|.-+|..|+.+|+.|+..|..+
T Consensus 137 ~PcTp~avi~lL~~~---~i~--l~Gk~vvVvGrs~~------------------VG~Pla~lL~~~gAtVtv~hs~t 191 (285)
T PRK14191 137 VPATPMGVMRLLKHY---HIE--IKGKDVVIIGASNI------------------VGKPLAMLMLNAGASVSVCHILT 191 (285)
T ss_pred CCCcHHHHHHHHHHh---CCC--CCCCEEEEECCCch------------------hHHHHHHHHHHCCCEEEEEeCCc
Confidence 566788888777664 222 48999999877643 48889999999999999998654
No 305
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=64.52 E-value=7 Score=38.23 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=22.8
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.|.||..||..|+.+|+.|++.-+.
T Consensus 13 aG~MG~gIA~~la~aG~~V~l~d~~ 37 (503)
T TIGR02279 13 AGAMGAGIAQVAASAGHQVLLYDIR 37 (503)
T ss_pred cCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 6999999999999999999987654
No 306
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=64.33 E-value=10 Score=33.99 Aligned_cols=39 Identities=26% Similarity=0.304 Sum_probs=28.4
Q ss_pred ceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 44 ~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
++|+|++||+-..+- ....+|+++.++||+|.++..+.+
T Consensus 2 ~~i~i~~~g~gG~~~--------------~~~~la~~L~~~g~ev~vv~~~~~ 40 (357)
T PRK00726 2 KKILLAGGGTGGHVF--------------PALALAEELKKRGWEVLYLGTARG 40 (357)
T ss_pred cEEEEEcCcchHhhh--------------HHHHHHHHHHhCCCEEEEEECCCc
Confidence 467777776643332 234689999999999999998664
No 307
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=64.28 E-value=7.6 Score=34.57 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=22.9
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
=.|.||..+|..|+.+|+.|++..+.
T Consensus 11 G~G~mG~~iA~~l~~~G~~V~~~d~~ 36 (295)
T PLN02545 11 GAGQMGSGIAQLAAAAGMDVWLLDSD 36 (295)
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEeCC
Confidence 36999999999999999999887644
No 308
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=64.16 E-value=8.3 Score=34.18 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=22.9
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+||.-|..+|++|+++|++|+.+.+.
T Consensus 8 atG~iG~~l~~~L~~~g~~V~~~~~~ 33 (338)
T PRK10675 8 GSGYIGSHTCVQLLQNGHDVVILDNL 33 (338)
T ss_pred CCChHHHHHHHHHHHCCCeEEEEecC
Confidence 46899999999999999999998653
No 309
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=64.14 E-value=7.9 Score=34.38 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=23.4
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
=.|.||..+|..++.+|+.|++..+.
T Consensus 11 GaG~mG~~iA~~la~~G~~V~l~d~~ 36 (292)
T PRK07530 11 GAGQMGNGIAHVCALAGYDVLLNDVS 36 (292)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 47999999999999999999988754
No 310
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=64.13 E-value=12 Score=34.79 Aligned_cols=35 Identities=26% Similarity=0.336 Sum_probs=30.8
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEee
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r 93 (225)
..+++|+||.|| |--|..||+-+.-.|++||.+--
T Consensus 25 ~~~lrI~itGga------------------GFIgSHLvdkLm~egh~VIa~Dn 59 (350)
T KOG1429|consen 25 SQNLRILITGGA------------------GFIGSHLVDKLMTEGHEVIALDN 59 (350)
T ss_pred CCCcEEEEecCc------------------chHHHHHHHHHHhcCCeEEEEec
Confidence 467899999997 67799999999999999998763
No 311
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=63.58 E-value=8.7 Score=34.57 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=23.8
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
-+|.||.++|..+...|+.|++..|..
T Consensus 11 G~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 11 GAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 379999999999999999999877654
No 312
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=63.44 E-value=9.7 Score=31.53 Aligned_cols=35 Identities=20% Similarity=0.183 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecC
Q 027330 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLE 58 (225)
Q Consensus 18 ~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID 58 (225)
.|.+.++|.+.++++++.+ +--++||+|||..-=+
T Consensus 44 v~Dd~~~i~~~l~~~~~~~------~~DlVIttGGtg~g~~ 78 (163)
T TIGR02667 44 VKDDIYQIRAQVSAWIADP------DVQVILITGGTGFTGR 78 (163)
T ss_pred cCCCHHHHHHHHHHHHhcC------CCCEEEECCCcCCCCC
Confidence 4778999999998876422 2357888888876443
No 313
>PRK08638 threonine dehydratase; Validated
Probab=63.20 E-value=39 Score=31.10 Aligned_cols=30 Identities=13% Similarity=0.155 Sum_probs=25.8
Q ss_pred ecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 66 DNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 66 ~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
--.|||..|.++|-++...|+.++.+....
T Consensus 79 v~~SsGN~g~alA~~aa~~G~~~~iv~p~~ 108 (333)
T PRK08638 79 VACSAGNHAQGVALSCALLGIDGKVVMPKG 108 (333)
T ss_pred EEeCCcHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 337999999999999999999998877544
No 314
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=63.01 E-value=19 Score=34.26 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=41.5
Q ss_pred ceEEEecCceeeecC---CCCeeEEecC---------------ccchhHHHHHHHHHHCCCEEEEEeecCCCCC
Q 027330 44 RVACVTSGGTTVPLE---QRCVRYIDNF---------------SSGHRGAASTEHLIKMGYAVIFLYRRGTCEP 99 (225)
Q Consensus 44 ~~vlITSGgT~epID---~~~VRfI~Nf---------------SSG~~Ga~iAe~fl~~G~~Vi~l~r~~s~~P 99 (225)
..++|.+|++.-+++ ...++++++. =.|-.|..+|..|.+.|.+|+++++...+.|
T Consensus 138 d~lVIATGs~p~~ipg~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~ 211 (466)
T PRK06115 138 KDIVIATGSEPTPLPGVTIDNQRIIDSTGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP 211 (466)
T ss_pred CEEEEeCCCCCCCCCCCCCCCCeEECHHHHhCCccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC
Confidence 478898998764443 1246666642 3778899999999999999999997665544
No 315
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=63.00 E-value=8.4 Score=34.82 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=23.3
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.|.||.++|..++++|++|+++.|.
T Consensus 12 ~G~mG~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 12 AGAWGTALAVLAASKGVPVRLWARR 36 (328)
T ss_pred cCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 6999999999999999999998874
No 316
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=62.94 E-value=16 Score=37.17 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=29.8
Q ss_pred CCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 60 RCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 60 ~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.+++-|.=.=.|.||..||..|+..|+.|+++-..
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~ 345 (715)
T PRK11730 311 KPVKQAAVLGAGIMGGGIAYQSASKGVPVIMKDIN 345 (715)
T ss_pred cccceEEEECCchhHHHHHHHHHhCCCeEEEEeCC
Confidence 36666777789999999999999999999998744
No 317
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.70 E-value=23 Score=32.38 Aligned_cols=55 Identities=18% Similarity=0.114 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 18 ~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.|-.+..+.+.++.+ +. .+.||+|+|...| +..|.-+|..|+.+|+.|+.+|+++
T Consensus 138 ~PcTp~ai~~ll~~~---~i--~l~Gk~vvVIGrs------------------~~VG~pla~lL~~~gatVtv~~s~t 192 (286)
T PRK14175 138 VPCTPLGIMEILKHA---DI--DLEGKNAVVIGRS------------------HIVGQPVSKLLLQKNASVTILHSRS 192 (286)
T ss_pred CCCcHHHHHHHHHHc---CC--CCCCCEEEEECCC------------------chhHHHHHHHHHHCCCeEEEEeCCc
Confidence 455777777666654 11 2588898888764 3469999999999999999999764
No 318
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=62.49 E-value=1e+02 Score=27.85 Aligned_cols=38 Identities=11% Similarity=0.130 Sum_probs=29.3
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
++||++||+.=+..-.| +..||+.+.+.|++..|-+-.
T Consensus 4 L~GK~~lI~Gvan~rSI----------------AwGIAk~l~~~GAeL~fTy~~ 41 (259)
T COG0623 4 LEGKRILIMGVANNRSI----------------AWGIAKALAEQGAELAFTYQG 41 (259)
T ss_pred cCCceEEEEEecccccH----------------HHHHHHHHHHcCCEEEEEecc
Confidence 58999999864433222 489999999999999998744
No 319
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.46 E-value=8.5 Score=35.29 Aligned_cols=55 Identities=15% Similarity=0.038 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 18 ~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.|-.+..+.+-++.+ +. ...||+|+|-. -||.||..+|..++++||.|+..|.++
T Consensus 138 ~PcTp~ai~~ll~~~---~i--~~~Gk~V~viG------------------rs~~mG~PmA~~L~~~g~tVtv~~~rT 192 (296)
T PRK14188 138 VPCTPLGCMMLLRRV---HG--DLSGLNAVVIG------------------RSNLVGKPMAQLLLAANATVTIAHSRT 192 (296)
T ss_pred cCCCHHHHHHHHHHh---CC--CCCCCEEEEEc------------------CCcchHHHHHHHHHhCCCEEEEECCCC
Confidence 466777777766654 11 24788777621 278999999999999999999998543
No 320
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=62.25 E-value=8.2 Score=34.26 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=22.9
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
=.|.||..+|..++++|+.|+++-+.
T Consensus 8 G~G~mG~~iA~~la~~G~~V~~~d~~ 33 (288)
T PRK09260 8 GAGVMGRGIAYVFAVSGFQTTLVDIK 33 (288)
T ss_pred CccHHHHHHHHHHHhCCCcEEEEeCC
Confidence 36999999999999999999988653
No 321
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=62.14 E-value=23 Score=29.80 Aligned_cols=71 Identities=17% Similarity=0.099 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCCCceEEEecCce-e----eecC-CCCeeEEecCccchhH----HHHHHHHHHCCCEEE
Q 027330 20 NDRAAISQKLKEFIALNSSESGTRRVACVTSGGT-T----VPLE-QRCVRYIDNFSSGHRG----AASTEHLIKMGYAVI 89 (225)
Q Consensus 20 ~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT-~----epID-~~~VRfI~NfSSG~~G----a~iAe~fl~~G~~Vi 89 (225)
-.++.+.+.+.+++. .+ -++++-+|+ . ..+. ..+-||++....|.|| ++|.-.+...+..|+
T Consensus 8 l~~~~~~~~l~~~l~-------~d-~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~~GsmG~~lpaaiGa~la~p~~~vv 79 (202)
T cd02006 8 IKPQRVYEEMNKAFG-------RD-VRYVTTIGLSQIAGAQMLHVYKPRHWINCGQAGPLGWTVPAALGVAAADPDRQVV 79 (202)
T ss_pred cCHHHHHHHHHhhCC-------CC-eEEEECCcHHHHHHHHhcCcCCCCeEEccCCccchhhhhHHHHhHHhhCCCCeEE
Confidence 466777777777653 22 445555444 3 2232 2356889877789999 555555555677899
Q ss_pred EEeecCCCC
Q 027330 90 FLYRRGTCE 98 (225)
Q Consensus 90 ~l~r~~s~~ 98 (225)
.|.|.++..
T Consensus 80 ~i~GDG~f~ 88 (202)
T cd02006 80 ALSGDYDFQ 88 (202)
T ss_pred EEEeChHhh
Confidence 999999853
No 322
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=62.04 E-value=6.9 Score=35.40 Aligned_cols=35 Identities=11% Similarity=0.195 Sum_probs=29.8
Q ss_pred CeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 61 CVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 61 ~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
+++.++=+-.|.||+.||+-.+..|+.|.++-+..
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~ 44 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE 44 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence 55666667799999999999999999999988654
No 323
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=61.14 E-value=10 Score=32.33 Aligned_cols=26 Identities=23% Similarity=0.278 Sum_probs=22.2
Q ss_pred ccchhHHHHHHHHHH----CCCEEEEEeec
Q 027330 69 SSGHRGAASTEHLIK----MGYAVIFLYRR 94 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~----~G~~Vi~l~r~ 94 (225)
.+|..|.++|+.|++ .|+.|+++.|.
T Consensus 8 as~GIG~~~a~~la~~~~~~g~~V~~~~r~ 37 (256)
T TIGR01500 8 ASRGFGRTIAQELAKCLKSPGSVLVLSARN 37 (256)
T ss_pred CCCchHHHHHHHHHHhhccCCcEEEEEEcC
Confidence 346789999999997 79999999875
No 324
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=61.14 E-value=18 Score=33.26 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=23.2
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
++...|.+.|++++.+|+.|++.+|..
T Consensus 43 ansGIG~eta~~La~~Ga~Vv~~~R~~ 69 (314)
T KOG1208|consen 43 ATSGIGFETARELALRGAHVVLACRNE 69 (314)
T ss_pred CCCchHHHHHHHHHhCCCEEEEEeCCH
Confidence 344679999999999999999999875
No 325
>PRK08526 threonine dehydratase; Provisional
Probab=61.02 E-value=73 Score=30.19 Aligned_cols=31 Identities=16% Similarity=0.241 Sum_probs=26.6
Q ss_pred EEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 64 YIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 64 fI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.|+ -|+|..|.++|-++...|..++.+...+
T Consensus 71 VV~-aSaGNhg~avA~aa~~~Gi~~~IvmP~~ 101 (403)
T PRK08526 71 VIA-ASAGNHAQGVAISAKKFGIKAVIVMPEA 101 (403)
T ss_pred EEE-ECccHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 344 7999999999999999999998888444
No 326
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=60.89 E-value=11 Score=33.28 Aligned_cols=28 Identities=32% Similarity=0.424 Sum_probs=24.6
Q ss_pred ccchhHHHHHHHHHHCC--CEEEEEeecCC
Q 027330 69 SSGHRGAASTEHLIKMG--YAVIFLYRRGT 96 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G--~~Vi~l~r~~s 96 (225)
+||..|..++++|+++| +.|+.+.|..+
T Consensus 7 atG~lG~~l~~~L~~~g~~~~V~~l~R~~~ 36 (367)
T TIGR01746 7 ATGFLGAYLLEELLRRSTQAKVICLVRAAS 36 (367)
T ss_pred cchHHHHHHHHHHHhCCCCCEEEEEEccCC
Confidence 58999999999999999 77999987644
No 327
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=60.72 E-value=11 Score=31.34 Aligned_cols=36 Identities=25% Similarity=0.335 Sum_probs=29.5
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.++++++|..| +|..|.++|+.|++.|+.|+++.|.
T Consensus 26 l~~~~vlVlGg------------------tG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 26 LKGKTAVVLGG------------------TGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCCCEEEEECC------------------CCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 46788888754 4678999999999999999998764
No 328
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=60.72 E-value=11 Score=28.57 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=28.1
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.+|++|||..|| ..|+.=++.|++.|+.|+++...
T Consensus 5 l~~~~vlVvGgG-------------------~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 5 LKGKRVLVVGGG-------------------PVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp -TT-EEEEEEES-------------------HHHHHHHHHHCCCTBEEEEEESS
T ss_pred cCCCEEEEECCC-------------------HHHHHHHHHHHhCCCEEEEECCc
Confidence 478888887765 56888899999999999999966
No 329
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=60.62 E-value=9.3 Score=33.97 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=23.1
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
=.|.||..+|..++.+|+.|+++-+.
T Consensus 10 GaG~mG~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 10 GAGVLGSQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEeCC
Confidence 37999999999999999999988754
No 330
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=60.21 E-value=24 Score=34.86 Aligned_cols=52 Identities=25% Similarity=0.255 Sum_probs=45.9
Q ss_pred ceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecCCCCCC
Q 027330 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPY 100 (225)
Q Consensus 44 ~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s~~P~ 100 (225)
..++||+|=+ .|..-.|.|+-.=.++-.+++++..+|+.|.||++....-|+
T Consensus 18 ~~~~~~tg~~-----psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~l 69 (515)
T TIGR00467 18 NLYTVASGIT-----PSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPL 69 (515)
T ss_pred CeEEEecCCC-----CCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCccc
Confidence 4799999977 568899999998899999999999999999999998877555
No 331
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=60.07 E-value=8.5 Score=35.79 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=32.3
Q ss_pred ceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 44 ~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
.+|+|++|||.=-|= |+++|+++.++|++|.|+...+.
T Consensus 6 ~ki~i~aGgtsGhi~---------------paal~~~l~~~~~~~~~~g~gg~ 43 (385)
T TIGR00215 6 PTIALVAGEASGDIL---------------GAGLRQQLKEHYPNARFIGVAGP 43 (385)
T ss_pred CeEEEEeCCccHHHH---------------HHHHHHHHHhcCCCcEEEEEccH
Confidence 479999999987777 78999999999999988876653
No 332
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=59.98 E-value=14 Score=34.42 Aligned_cols=33 Identities=30% Similarity=0.408 Sum_probs=27.6
Q ss_pred ceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 44 ~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
++||||.|. |--|...+.++++.||+|+.+-.-
T Consensus 1 ~~iLVtGGA------------------GYIGSHtv~~Ll~~G~~vvV~DNL 33 (329)
T COG1087 1 MKVLVTGGA------------------GYIGSHTVRQLLKTGHEVVVLDNL 33 (329)
T ss_pred CeEEEecCc------------------chhHHHHHHHHHHCCCeEEEEecC
Confidence 468888874 777999999999999999988643
No 333
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=59.76 E-value=11 Score=34.68 Aligned_cols=28 Identities=39% Similarity=0.393 Sum_probs=26.1
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
+||..|.+++..+.+.|+.|+.|.|...
T Consensus 6 gTGlIG~~L~~~L~~~gh~v~iltR~~~ 33 (297)
T COG1090 6 GTGLIGRALTARLRKGGHQVTILTRRPP 33 (297)
T ss_pred cccchhHHHHHHHHhCCCeEEEEEcCCc
Confidence 6899999999999999999999999864
No 334
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=59.71 E-value=12 Score=29.64 Aligned_cols=32 Identities=28% Similarity=0.205 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeec
Q 027330 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPL 57 (225)
Q Consensus 18 ~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epI 57 (225)
.+.+.++|.+.+++.+.+ -.++||+|||..-=
T Consensus 41 v~Dd~~~i~~~i~~~~~~--------~DlvittGG~g~g~ 72 (133)
T cd00758 41 VPDDADSIRAALIEASRE--------ADLVLTTGGTGVGR 72 (133)
T ss_pred cCCCHHHHHHHHHHHHhc--------CCEEEECCCCCCCC
Confidence 567899999998887643 25888889987643
No 335
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=59.71 E-value=8.8 Score=35.05 Aligned_cols=55 Identities=20% Similarity=0.175 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 18 ~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.|-.+..+.+-++.+ +.+ ..||+|+|-. -||.+|.-+|..++++||.|+..|.++
T Consensus 138 ~PcTp~avi~lL~~~---~i~--l~Gk~v~vIG------------------~S~ivG~Pla~lL~~~gatVtv~~s~t 192 (284)
T PRK14179 138 IPCTPAGIMEMFREY---NVE--LEGKHAVVIG------------------RSNIVGKPMAQLLLDKNATVTLTHSRT 192 (284)
T ss_pred cCCCHHHHHHHHHHh---CCC--CCCCEEEEEC------------------CCCcCcHHHHHHHHHCCCEEEEECCCC
Confidence 566788887766654 222 4788877722 368899999999999999999987554
No 336
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=59.68 E-value=15 Score=35.78 Aligned_cols=59 Identities=12% Similarity=0.120 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHH-HCCCEEEEEeec
Q 027330 24 AISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLI-KMGYAVIFLYRR 94 (225)
Q Consensus 24 ~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl-~~G~~Vi~l~r~ 94 (225)
++.+-+++++... .-.+-|+|.+-...-|+. - ..+..+|.++||||. .+|++|.++.-.
T Consensus 187 Ev~efi~~~~~~~----~l~rtvvv~atsd~p~~~--R------~~a~~~a~tiAEyfr~d~G~~VLli~Ds 246 (458)
T TIGR01041 187 EANFFMKDFEETG----ALERAVVFLNLADDPAVE--R------IVTPRMALTAAEYLAFEKDMHVLVILTD 246 (458)
T ss_pred HHHHHHHHHHhcC----CcceEEEEEECCCCCHHH--H------HHHHHHHHHHHHHHHHccCCcEEEEEcC
Confidence 4444444444322 134567777666666666 2 346788999999999 699999999854
No 337
>PRK06444 prephenate dehydrogenase; Provisional
Probab=59.29 E-value=9.5 Score=32.80 Aligned_cols=21 Identities=24% Similarity=0.253 Sum_probs=19.7
Q ss_pred ccchhHHHHHHHHHHCCCEEE
Q 027330 69 SSGHRGAASTEHLIKMGYAVI 89 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi 89 (225)
.+|+||..+|++|-+.|+.|+
T Consensus 8 ~~G~mG~~~~~~~~~~g~~v~ 28 (197)
T PRK06444 8 KNGRLGRVLCSILDDNGLGVY 28 (197)
T ss_pred cCCcHHHHHHHHHHhCCCEEE
Confidence 579999999999999999996
No 338
>PRK07201 short chain dehydrogenase; Provisional
Probab=58.98 E-value=13 Score=36.32 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=24.0
Q ss_pred ccchhHHHHHHHHH--HCCCEEEEEeecC
Q 027330 69 SSGHRGAASTEHLI--KMGYAVIFLYRRG 95 (225)
Q Consensus 69 SSG~~Ga~iAe~fl--~~G~~Vi~l~r~~ 95 (225)
.||..|..++++++ .+|+.|+.+.|..
T Consensus 8 atGfIG~~lv~~Ll~~~~g~~V~~l~R~~ 36 (657)
T PRK07201 8 GTGFIGRRLVSRLLDRRREATVHVLVRRQ 36 (657)
T ss_pred CccHHHHHHHHHHHhcCCCCEEEEEECcc
Confidence 47999999999999 5999999999854
No 339
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=58.80 E-value=19 Score=32.82 Aligned_cols=44 Identities=18% Similarity=0.196 Sum_probs=33.0
Q ss_pred CceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHC-CCEEEEEeec
Q 027330 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKM-GYAVIFLYRR 94 (225)
Q Consensus 43 ~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~-G~~Vi~l~r~ 94 (225)
.+-|+|.+-.-.-|+. | +-....|.++||||... |.+|.++.-.
T Consensus 130 ~~tv~v~~t~~~~~~~----r----~~a~~~a~aiAEyfrd~~g~~VLl~~D~ 174 (276)
T cd01135 130 ERVVLFLNLANDPTIE----R----IITPRMALTTAEYLAYEKGKHVLVILTD 174 (276)
T ss_pred ceEEEEEecCCCCHHH----H----HHHHHHHHHHHHHHHhccCCeEEEEEcC
Confidence 4567776666665665 2 33577899999999997 9999999844
No 340
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=58.67 E-value=10 Score=33.20 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=23.8
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
-.|.+|..+|..|.+.|++|+++.|.
T Consensus 7 G~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 7 GAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 36999999999999999999999984
No 341
>PRK07476 eutB threonine dehydratase; Provisional
Probab=58.30 E-value=40 Score=30.64 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=24.6
Q ss_pred CccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 68 FSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 68 fSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.|+|..|.++|-+....|+.++.+....
T Consensus 73 aSsGN~g~alA~~a~~~G~~~~i~vp~~ 100 (322)
T PRK07476 73 ASTGNHGRALAYAARALGIRATICMSRL 100 (322)
T ss_pred ECCChHHHHHHHHHHHhCCCEEEEeCCC
Confidence 4999999999999999999988887443
No 342
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=58.30 E-value=11 Score=33.38 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=23.0
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
=.|.||..+|..++++|+.|+++...
T Consensus 10 G~G~mG~~ia~~la~~g~~V~~~d~~ 35 (282)
T PRK05808 10 GAGTMGNGIAQVCAVAGYDVVMVDIS 35 (282)
T ss_pred ccCHHHHHHHHHHHHCCCceEEEeCC
Confidence 36999999999999999999998643
No 343
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=58.09 E-value=13 Score=32.04 Aligned_cols=36 Identities=22% Similarity=0.200 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecC
Q 027330 17 PPLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLE 58 (225)
Q Consensus 17 ~~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID 58 (225)
-.|.+.++|.+.+.+++.+ .+-.++||+|||..-=+
T Consensus 46 iVpDd~~~I~~aL~~a~~~------~~~DlIITTGGtg~g~r 81 (193)
T PRK09417 46 LIPDEQDLIEQTLIELVDE------MGCDLVLTTGGTGPARR 81 (193)
T ss_pred ECCCCHHHHHHHHHHHhhc------CCCCEEEECCCCCCCCC
Confidence 4578899999999887642 23368888899887555
No 344
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=57.89 E-value=1.2e+02 Score=25.89 Aligned_cols=29 Identities=17% Similarity=0.358 Sum_probs=26.0
Q ss_pred CccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 68 FSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 68 fSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
.|+|..|.++|.++...|+.++.+..+..
T Consensus 56 ~ssGN~g~alA~~a~~~g~~~~v~~p~~~ 84 (244)
T cd00640 56 STGGNTGIALAAAAARLGLKCTIVMPEGA 84 (244)
T ss_pred eCCcHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 68899999999999999999999987664
No 345
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=57.40 E-value=15 Score=31.78 Aligned_cols=28 Identities=29% Similarity=0.246 Sum_probs=25.1
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeecCCC
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRRGTC 97 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~~s~ 97 (225)
||.-|..+++.|+++||+|+.+.|....
T Consensus 9 tGfiG~~l~~~L~~~g~~V~~~~r~~~~ 36 (314)
T COG0451 9 AGFIGSHLVERLLAAGHDVRGLDRLRDG 36 (314)
T ss_pred cccHHHHHHHHHHhCCCeEEEEeCCCcc
Confidence 6999999999999999999999986543
No 346
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=57.33 E-value=17 Score=36.18 Aligned_cols=35 Identities=17% Similarity=0.333 Sum_probs=29.7
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHC--CCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKM--GYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~--G~~Vi~l~r~ 94 (225)
+.|+||||.| ||.-|..++++|+++ ||.|+.+.+.
T Consensus 5 ~~~~VLVTGa------------------tGfIG~~lv~~Ll~~g~~~~V~~~d~~ 41 (668)
T PLN02260 5 EPKNILITGA------------------AGFIASHVANRLIRNYPDYKIVVLDKL 41 (668)
T ss_pred CCCEEEEECC------------------CcHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 5788999876 799999999999998 7888877653
No 347
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=57.18 E-value=12 Score=36.71 Aligned_cols=45 Identities=18% Similarity=0.230 Sum_probs=33.6
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
-.+-|+|.+.+..-|.. |+ -+...|.++||||...|.+|.++.-.
T Consensus 197 l~~tvvV~atad~~~~~----r~----~ap~~a~aiAEyfr~~G~~VLlv~Dd 241 (485)
T CHL00059 197 MEYTIVVAETADSPATL----QY----LAPYTGAALAEYFMYRGRHTLIIYDD 241 (485)
T ss_pred hhceEEEEeCCCCCHHH----HH----HHHHHHhhHHHHHHHcCCCEEEEEcC
Confidence 34567777766655555 33 34667999999999999999999854
No 348
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=57.14 E-value=14 Score=34.69 Aligned_cols=32 Identities=31% Similarity=0.503 Sum_probs=25.7
Q ss_pred CceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEe
Q 027330 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLY 92 (225)
Q Consensus 43 ~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~ 92 (225)
++.||||.|+ |--|.+-+-+++++||.|+.|-
T Consensus 2 ~~~VLVtGga------------------GyiGsht~l~L~~~gy~v~~vD 33 (343)
T KOG1371|consen 2 GKHVLVTGGA------------------GYIGSHTVLALLKRGYGVVIVD 33 (343)
T ss_pred CcEEEEecCC------------------cceehHHHHHHHhCCCcEEEEe
Confidence 5689999885 5667888888888888888775
No 349
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=57.06 E-value=13 Score=33.06 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=23.2
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.|.||..+|..+++.|+.|+++.|.
T Consensus 9 ~G~mG~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 9 AGSWGTALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CCHHHHHHHHHHHhCCCEEEEEECC
Confidence 6999999999999999999988875
No 350
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=56.77 E-value=13 Score=31.43 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=26.4
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeecCCC
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRRGTC 97 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~~s~ 97 (225)
.||.-|..++++++++|+.|..+.|....
T Consensus 8 atG~~G~~~~~~L~~~~~~v~~~~r~~~~ 36 (275)
T COG0702 8 ATGFVGGAVVRELLARGHEVRAAVRNPEA 36 (275)
T ss_pred cccchHHHHHHHHHhCCCEEEEEEeCHHH
Confidence 48999999999999999999999998654
No 351
>KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism]
Probab=56.76 E-value=11 Score=34.68 Aligned_cols=29 Identities=31% Similarity=0.508 Sum_probs=25.9
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeecCCC
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRRGTC 97 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~~s~ 97 (225)
=||+-|.-+||.+|..||+|-=|-|+.|-
T Consensus 36 ItGQDGSYLaEfLL~KgYeVHGiiRRsSs 64 (376)
T KOG1372|consen 36 ITGQDGSYLAEFLLSKGYEVHGIIRRSSS 64 (376)
T ss_pred ccCCCchHHHHHHHhCCceeeEEEeeccc
Confidence 36899999999999999999988888774
No 352
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=56.62 E-value=12 Score=33.19 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=22.5
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.|.||..+|..+++.|+.|+...+.
T Consensus 7 ~G~mG~~iA~~l~~~G~~V~~~dr~ 31 (291)
T TIGR01505 7 LGIMGSPMSINLAKAGYQLHVTTIG 31 (291)
T ss_pred ecHHHHHHHHHHHHCCCeEEEEcCC
Confidence 7999999999999999999877654
No 353
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=56.35 E-value=19 Score=33.77 Aligned_cols=33 Identities=21% Similarity=0.151 Sum_probs=27.3
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEee
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r 93 (225)
.||+|+||.+| ..|.+.|+.|+++|+.|+..-+
T Consensus 4 ~~k~v~v~G~g-------------------~~G~s~a~~l~~~G~~V~~~d~ 36 (447)
T PRK02472 4 QNKKVLVLGLA-------------------KSGYAAAKLLHKLGANVTVNDG 36 (447)
T ss_pred CCCEEEEEeeC-------------------HHHHHHHHHHHHCCCEEEEEcC
Confidence 67888888854 4689999999999999988754
No 354
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=55.56 E-value=14 Score=33.35 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=23.2
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.|.||.++|..+.+.|++|+++.|.
T Consensus 8 aGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 8 AGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred cCHHHHHHHHHHHHCCCeEEEEecC
Confidence 6999999999999999999998874
No 355
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=55.39 E-value=16 Score=31.69 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=22.3
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEee
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYR 93 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r 93 (225)
.||..|..+++.|+++|+.|+.+.+
T Consensus 7 atG~iG~~l~~~l~~~g~~V~~~~~ 31 (328)
T TIGR01179 7 GAGYIGSHTVRQLLESGHEVVVLDN 31 (328)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEeC
Confidence 5799999999999999999987754
No 356
>PF15581 Imm35: Immunity protein 35
Probab=55.33 E-value=27 Score=26.79 Aligned_cols=44 Identities=23% Similarity=0.330 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchh
Q 027330 21 DRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHR 73 (225)
Q Consensus 21 ~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~ 73 (225)
+.+++..++++-.++. .+.+++|-=-|-.-..| .||| ||+.|+.
T Consensus 47 ~~~qV~~kl~ava~~~-----~~~~~vvKkE~~~Iwfd--~VrF--~f~~GrL 90 (93)
T PF15581_consen 47 PEEQVLYKLEAVAAKG-----PEAKIVVKKEGNIIWFD--EVRF--NFDEGRL 90 (93)
T ss_pred CHHHHHHHHHHHHhcC-----CCcceEEEecCCeEEEc--ceeE--EeccceE
Confidence 4567777777755432 34556666677788999 9999 6888874
No 357
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=55.22 E-value=12 Score=33.77 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=24.0
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
-.|.+|..+|..+.++|++|+++.|.
T Consensus 9 G~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 9 GAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred CCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 47999999999999999999999875
No 358
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=55.11 E-value=23 Score=32.23 Aligned_cols=61 Identities=13% Similarity=0.035 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHC-CCEEEEEeec
Q 027330 22 RAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKM-GYAVIFLYRR 94 (225)
Q Consensus 22 ~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~-G~~Vi~l~r~ 94 (225)
..|+.+-++++.... .-.+-++|.+-.-.-|.+ - ..+..+|.++||||... |++|.++.-.
T Consensus 110 ~~Ev~e~~~~~~~~~----~~~~tvvv~~t~d~~~~~--r------~~~~~~a~~~AEyfr~~~g~~Vl~~~Ds 171 (274)
T cd01133 110 TREGNDLYHEMKESG----VLSKTALVYGQMNEPPGA--R------ARVALTGLTMAEYFRDEEGQDVLLFIDN 171 (274)
T ss_pred cHHHHHHHHHHHhcC----CcceeEEEEECCCCCHHH--H------HHHHHHHHHHHHHHHHhcCCeEEEEEeC
Confidence 344444444544322 134566666666555665 2 23567899999999997 9999999843
No 359
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=55.01 E-value=17 Score=32.22 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=25.0
Q ss_pred EecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 65 IDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 65 I~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
|.=.=.|.||..+|..|+.+|+.|+++-+.
T Consensus 6 I~ViGaG~mG~~iA~~la~~G~~V~l~d~~ 35 (291)
T PRK06035 6 IGVVGSGVMGQGIAQVFARTGYDVTIVDVS 35 (291)
T ss_pred EEEECccHHHHHHHHHHHhcCCeEEEEeCC
Confidence 333457999999999999999999988654
No 360
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.95 E-value=80 Score=28.87 Aligned_cols=55 Identities=13% Similarity=0.104 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 18 ~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.|-.+..+.+-++.+ +.+ ..||+|+|-..+.. -|.-+|..|+++|+.|+..|.++
T Consensus 137 ~PcTp~avi~lL~~~---~i~--l~Gk~vvViGrS~~------------------VG~Pla~lL~~~~AtVti~hs~T 191 (281)
T PRK14183 137 VPCTPLGVMELLEEY---EID--VKGKDVCVVGASNI------------------VGKPMAALLLNANATVDICHIFT 191 (281)
T ss_pred CCCcHHHHHHHHHHc---CCC--CCCCEEEEECCCCc------------------chHHHHHHHHHCCCEEEEeCCCC
Confidence 466788887666654 222 58999888776544 38889999999999999998654
No 361
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=54.92 E-value=15 Score=34.60 Aligned_cols=36 Identities=28% Similarity=0.354 Sum_probs=30.6
Q ss_pred EEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEe
Q 027330 47 CVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLY 92 (225)
Q Consensus 47 lITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~ 92 (225)
+||.|-|+ =|| ..||.+|.++|-.+..+||.+|.+.
T Consensus 99 ~i~pg~st-liE---------pTSGNtGigLA~~~a~~Gyk~i~tm 134 (362)
T KOG1252|consen 99 LITPGKST-LIE---------PTSGNTGIGLAYMAALRGYKCIITM 134 (362)
T ss_pred CccCCceE-EEe---------cCCCchHHHHHHHHHHcCceEEEEe
Confidence 67777554 467 7999999999999999999999987
No 362
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=54.86 E-value=13 Score=32.24 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=24.5
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
-|+.|..+|+.|.+.|++|+.|.+...
T Consensus 8 ~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 8 AGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 489999999999999999999998754
No 363
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=54.66 E-value=75 Score=28.85 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=25.3
Q ss_pred CccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 68 FSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 68 fSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.|+|..|.++|-++...|+.++.+....
T Consensus 57 aSsGN~g~alA~~a~~~G~~~~iv~p~~ 84 (316)
T cd06448 57 SSGGNAGLAAAYAARKLGVPCTIVVPES 84 (316)
T ss_pred eCCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 6899999999999999999999888664
No 364
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=54.36 E-value=16 Score=28.63 Aligned_cols=30 Identities=30% Similarity=0.413 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceee
Q 027330 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTV 55 (225)
Q Consensus 18 ~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~e 55 (225)
.|.+.++|.+.+++++.+ --++||+|||..
T Consensus 40 v~Dd~~~I~~~l~~~~~~--------~dliittGG~g~ 69 (135)
T smart00852 40 VPDDKEAIKEALREALER--------ADLVITTGGTGP 69 (135)
T ss_pred eCCCHHHHHHHHHHHHhC--------CCEEEEcCCCCC
Confidence 357889999888887642 247888899883
No 365
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=54.03 E-value=23 Score=32.60 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=36.4
Q ss_pred CceEEEecCceeeecCCCCe------eEEecCccchhHHHHHHHHHHCCCEEEEEee
Q 027330 43 RRVACVTSGGTTVPLEQRCV------RYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (225)
Q Consensus 43 ~~~vlITSGgT~epID~~~V------RfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r 93 (225)
...|++|+|+++..+|.-.. .-+...++|..|-..++.+.+.|. |..+..
T Consensus 55 ~~~v~~~~gsgT~a~ea~~~nl~~~~~~~l~i~~G~fg~r~~~~a~~~g~-~~~~~~ 110 (349)
T TIGR01364 55 NYEVLFLQGGATGQFAAVPLNLLAEGKVADYIVTGAWSKKAAKEAKKYGV-VNVVAS 110 (349)
T ss_pred CceEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHhCC-cEEEec
Confidence 45788888877777772211 234557899999999999999999 777763
No 366
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=53.96 E-value=14 Score=33.07 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=22.8
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
-.|.||..+|..++++|+.|+...+.
T Consensus 8 GlG~mG~~mA~~l~~~G~~V~v~d~~ 33 (296)
T PRK15461 8 GLGQMGSPMASNLLKQGHQLQVFDVN 33 (296)
T ss_pred eeCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 37999999999999999999877654
No 367
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=53.80 E-value=20 Score=35.26 Aligned_cols=45 Identities=16% Similarity=0.215 Sum_probs=34.0
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
-.+.|+|.+-+..-|+. |+ -+..+|.++||||...|++|.++.-.
T Consensus 218 l~~tvvv~atsd~p~~~----r~----~a~~~a~tiAEyfrd~G~~VLli~Dd 262 (502)
T PRK09281 218 MEYTIVVAATASDPAPL----QY----LAPYAGCAMGEYFMDNGKDALIVYDD 262 (502)
T ss_pred ccceEEEEeCCCCCHHH----HH----HHHHHHHHHHHHHHHcCCCEEEEecC
Confidence 34567777766665665 33 35678999999999999999999744
No 368
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.77 E-value=93 Score=28.48 Aligned_cols=56 Identities=16% Similarity=0.084 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 18 ~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
.|-.+..+.+.++.+ +. ...||+|+|...+- .-|.-+|..|+.+|+.|+..|+++.
T Consensus 139 ~PcTp~av~~ll~~~---~i--~l~Gk~vvViGrs~------------------iVG~Pla~lL~~~~atVtv~hs~T~ 194 (285)
T PRK10792 139 RPCTPRGIMTLLERY---GI--DTYGLNAVVVGASN------------------IVGRPMSLELLLAGCTVTVCHRFTK 194 (285)
T ss_pred CCCCHHHHHHHHHHc---CC--CCCCCEEEEECCCc------------------ccHHHHHHHHHHCCCeEEEEECCCC
Confidence 466888888777664 22 24899998876543 3489999999999999999998753
No 369
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=53.71 E-value=22 Score=35.09 Aligned_cols=45 Identities=18% Similarity=0.257 Sum_probs=33.7
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
-.+.|+|.+.+..-|.. |+ -....|.++||||..+|.+|.++.-.
T Consensus 218 l~~tvvV~atsd~~~~~----r~----~ap~~a~aiAEyfrd~G~~VLlv~Dd 262 (502)
T PRK13343 218 LEYTTVVVAEASDPPGL----QY----LAPFAGCAIAEYFRDQGQDALIVYDD 262 (502)
T ss_pred cceeEEEEecccccHHH----HH----HHHHHHHHHHHHHHhCCCCEEEEecc
Confidence 34667777777666666 33 24567899999999999999999744
No 370
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=53.49 E-value=14 Score=35.81 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=23.1
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
=.|.||..+|..|+.+|+.|++.-+.
T Consensus 11 G~G~MG~~iA~~la~~G~~V~v~D~~ 36 (495)
T PRK07531 11 GGGVIGGGWAARFLLAGIDVAVFDPH 36 (495)
T ss_pred CcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 48999999999999999999887653
No 371
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=53.29 E-value=15 Score=32.62 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=22.3
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.|.||..+|..+++.|+.|+...+.
T Consensus 4 lG~mG~~mA~~L~~~G~~V~v~dr~ 28 (288)
T TIGR01692 4 LGNMGGPMAANLLKAGHPVRVFDLF 28 (288)
T ss_pred ccHhHHHHHHHHHhCCCeEEEEeCC
Confidence 6999999999999999999877654
No 372
>PLN02996 fatty acyl-CoA reductase
Probab=53.10 E-value=24 Score=34.20 Aligned_cols=37 Identities=16% Similarity=0.280 Sum_probs=29.7
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCC---EEEEEeecCC
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGY---AVIFLYRRGT 96 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~---~Vi~l~r~~s 96 (225)
+||.|+||.| ||-.|..+++.+++.+. .|+.+.|+..
T Consensus 10 ~~k~VlvTGa------------------TGFlG~~ll~~LL~~~~~v~~I~~LvR~~~ 49 (491)
T PLN02996 10 ENKTILVTGA------------------TGFLAKIFVEKILRVQPNVKKLYLLLRASD 49 (491)
T ss_pred CCCeEEEeCC------------------CcHHHHHHHHHHHhhCCCCCEEEEEEeCCC
Confidence 6889999964 79999999999998764 3577777643
No 373
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=53.01 E-value=18 Score=33.91 Aligned_cols=37 Identities=32% Similarity=0.328 Sum_probs=30.2
Q ss_pred ceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCC-EEEEEeec
Q 027330 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGY-AVIFLYRR 94 (225)
Q Consensus 44 ~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~-~Vi~l~r~ 94 (225)
+++++|+|||-=-+- | +.++|++|.++|| .|.++-..
T Consensus 1 ~~ivl~~gGTGGHv~--p------------AlAl~~~l~~~g~~~v~~~~~~ 38 (357)
T COG0707 1 KKIVLTAGGTGGHVF--P------------ALALAEELAKRGWEQVIVLGTG 38 (357)
T ss_pred CeEEEEeCCCccchh--H------------HHHHHHHHHhhCccEEEEeccc
Confidence 578999999988777 3 7889999999999 57777433
No 374
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=52.99 E-value=37 Score=28.08 Aligned_cols=37 Identities=14% Similarity=0.021 Sum_probs=28.9
Q ss_pred CeeEEecCccchhHHHH----HHHHHHCCCEEEEEeecCCC
Q 027330 61 CVRYIDNFSSGHRGAAS----TEHLIKMGYAVIFLYRRGTC 97 (225)
Q Consensus 61 ~VRfI~NfSSG~~Ga~i----Ae~fl~~G~~Vi~l~r~~s~ 97 (225)
+-||+.+...|.||..+ .-.+...+..|+.|.|.++.
T Consensus 38 ~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f 78 (177)
T cd02010 38 PNTCLISNGLATMGVALPGAIGAKLVYPDRKVVAVSGDGGF 78 (177)
T ss_pred CCCEEeCCCChhhhhHHHHHHHHHHhCCCCcEEEEEcchHH
Confidence 56999999999999655 33444457789999999985
No 375
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=52.83 E-value=16 Score=37.23 Aligned_cols=35 Identities=11% Similarity=0.129 Sum_probs=30.2
Q ss_pred CCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 60 RCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 60 ~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
++||-|.=-=.|.||+.||..|+.+|+.|+++-..
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~ 345 (714)
T TIGR02437 311 KDVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDIN 345 (714)
T ss_pred cccceEEEECCchHHHHHHHHHHhCCCeEEEEeCC
Confidence 46777777789999999999999999999998743
No 376
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=52.64 E-value=19 Score=34.98 Aligned_cols=44 Identities=23% Similarity=0.323 Sum_probs=31.3
Q ss_pred CceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 43 ~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.+-|+|-+-.-.-|+. | .-...+|.++||||...|++|.++.-.
T Consensus 217 ~rtvvv~atsd~p~~~----R----~~a~~~A~tiAEyfrd~G~~VLl~~Ds 260 (444)
T PRK08972 217 ARSVVVAAPADTSPLM----R----LKGCETATTIAEYFRDQGLNVLLLMDS 260 (444)
T ss_pred ccEEEEEECCCCCHHH----H----HHHHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 3455555544444555 2 236788999999999999999999844
No 377
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=52.06 E-value=27 Score=34.01 Aligned_cols=44 Identities=16% Similarity=0.210 Sum_probs=31.6
Q ss_pred CceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHH-HCCCEEEEEeec
Q 027330 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLI-KMGYAVIFLYRR 94 (225)
Q Consensus 43 ~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl-~~G~~Vi~l~r~ 94 (225)
.+-|+|-+-.-.-|+. | ..+...|.++||||. ..|++|.++.-.
T Consensus 204 ~rtvvV~atsd~p~~~----R----~~a~~~a~tiAEyfr~d~G~~VLli~Ds 248 (460)
T PRK04196 204 ERSVVFLNLADDPAIE----R----ILTPRMALTAAEYLAFEKGMHVLVILTD 248 (460)
T ss_pred ceEEEEEEcCCCCHHH----H----HHHHHHHHHHHHHHHHhcCCcEEEEEcC
Confidence 3555665555444554 2 346788999999999 699999999854
No 378
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=51.77 E-value=23 Score=31.62 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=23.6
Q ss_pred CccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 68 FSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 68 fSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.=.|.||..+|..|++.|+.|+++.+.
T Consensus 10 IGaG~mG~~iA~~l~~~g~~V~~~d~~ 36 (311)
T PRK06130 10 IGAGTMGSGIAALFARKGLQVVLIDVM 36 (311)
T ss_pred ECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 357999999999999999999988753
No 379
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=51.53 E-value=20 Score=35.00 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=23.5
Q ss_pred CccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 68 FSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 68 fSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
-=.|.||..||..++.+|+.|++.-+.
T Consensus 13 IGaG~MG~gIA~~la~aG~~V~l~D~~ 39 (507)
T PRK08268 13 IGAGAMGAGIAQVAAQAGHTVLLYDAR 39 (507)
T ss_pred ECCCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 347999999999999999999987654
No 380
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=51.47 E-value=33 Score=26.80 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=24.6
Q ss_pred eEEecCccchhHHHHHHHHHH-CCCEEEEEeec
Q 027330 63 RYIDNFSSGHRGAASTEHLIK-MGYAVIFLYRR 94 (225)
Q Consensus 63 RfI~NfSSG~~Ga~iAe~fl~-~G~~Vi~l~r~ 94 (225)
|..=+=.+|+||..+++.+.+ .|.++.-...+
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~ 34 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDR 34 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEET
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEec
Confidence 455556789999999999999 88885555433
No 381
>PRK08639 threonine dehydratase; Validated
Probab=51.37 E-value=1.4e+02 Score=28.31 Aligned_cols=32 Identities=9% Similarity=0.054 Sum_probs=27.2
Q ss_pred EEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 64 YIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 64 fI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
-|--.|+|..|.++|-++...|+.++.+....
T Consensus 75 ~Vv~aSsGN~g~alA~~a~~~G~~~~IvmP~~ 106 (420)
T PRK08639 75 GVVCASAGNHAQGVAYACRHLGIPGVIFMPVT 106 (420)
T ss_pred EEEEECccHHHHHHHHHHHHcCCCEEEEECCC
Confidence 34448999999999999999999999988443
No 382
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=51.28 E-value=1.1e+02 Score=29.91 Aligned_cols=79 Identities=15% Similarity=0.179 Sum_probs=45.6
Q ss_pred EEecCccchhHHHHHHHHHHCCCEEEEEeecCCCCCCccCCCCcccchhhhcccCCceEeeCcchHHHHHHHHHHHHHhh
Q 027330 64 YIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVA 143 (225)
Q Consensus 64 fI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s~~P~~~~l~~~~~~~~l~~~~~~~i~v~~~~~~~~~~a~~~~~~~~~ 143 (225)
.|+ .|+|..|.++|-++...|+.++.+...++ |.. -.+.++.- +..|...+....+..+..+.+.+ .
T Consensus 68 VV~-aSaGNha~~vA~aa~~~Gi~~~IvmP~~t--p~~-------Kv~~~r~~-GA~Vvl~g~~~d~a~~~a~~la~--~ 134 (499)
T TIGR01124 68 VIA-ASAGNHAQGVAFSAARLGLKALIVMPETT--PDI-------KVDAVRGF-GGEVVLHGANFDDAKAKAIELSQ--E 134 (499)
T ss_pred EEE-ECCCHHHHHHHHHHHHcCCCEEEEECCCC--CHH-------HHHHHHhC-CCEEEEeCcCHHHHHHHHHHHHH--h
Confidence 344 69999999999999999999988885432 321 11111111 23344433333333333333332 3
Q ss_pred cCcccccccccH
Q 027330 144 GGLLLKLPFTTI 155 (225)
Q Consensus 144 ~~~ll~i~F~t~ 155 (225)
.+..+..||...
T Consensus 135 ~g~~~i~p~~~~ 146 (499)
T TIGR01124 135 KGLTFIHPFDDP 146 (499)
T ss_pred cCCEeeCCCCCh
Confidence 467788899654
No 383
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=51.18 E-value=20 Score=34.80 Aligned_cols=59 Identities=19% Similarity=0.315 Sum_probs=40.2
Q ss_pred HHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 28 KLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 28 ~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.|.+|+....-.....|-|+|-|=.-.-|+. -+ =.+.+.-+|||||...|.+|.|+.-.
T Consensus 203 EVrEFIE~~Lg~egl~rsViVvATSD~s~l~--R~------~aa~~At~IAEyFRDqG~~VLL~mDS 261 (441)
T COG1157 203 EVREFIEKDLGEEGLKRSVVVVATSDESALM--RL------KAAFTATTIAEYFRDQGKRVLLIMDS 261 (441)
T ss_pred hHHHHHHHhcchhhccceEEEEECCCCCHHH--HH------HHHHHHHHHHHHHHhCCCeEEEEeec
Confidence 4667776543211245667777766666666 22 24567788999999999999999743
No 384
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=51.00 E-value=18 Score=32.03 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=22.7
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.|.||..+|..|.++|+.|+.+.+.
T Consensus 8 ~G~mG~sla~~L~~~g~~V~~~d~~ 32 (279)
T PRK07417 8 LGLIGGSLGLDLRSLGHTVYGVSRR 32 (279)
T ss_pred ecHHHHHHHHHHHHCCCEEEEEECC
Confidence 7999999999999999999888754
No 385
>PRK08219 short chain dehydrogenase; Provisional
Probab=50.64 E-value=17 Score=29.90 Aligned_cols=25 Identities=24% Similarity=0.153 Sum_probs=22.2
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
+|..|..+|+.++++ +.|+.+.|..
T Consensus 12 ~g~iG~~l~~~l~~~-~~V~~~~r~~ 36 (227)
T PRK08219 12 SRGIGAAIARELAPT-HTLLLGGRPA 36 (227)
T ss_pred CcHHHHHHHHHHHhh-CCEEEEeCCH
Confidence 577899999999999 9999998864
No 386
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=50.22 E-value=15 Score=31.79 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=22.1
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEee
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYR 93 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r 93 (225)
.||-.|..++++|+++|+.|+.+.+
T Consensus 5 a~GfiG~~l~~~L~~~g~~v~~~~~ 29 (306)
T PLN02725 5 HRGLVGSAIVRKLEALGFTNLVLRT 29 (306)
T ss_pred CCCcccHHHHHHHHhCCCcEEEeec
Confidence 5899999999999999999887653
No 387
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=50.13 E-value=25 Score=34.62 Aligned_cols=44 Identities=14% Similarity=0.196 Sum_probs=31.8
Q ss_pred CceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 43 ~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.+.|+|.+-...-|.. |+ -+...|.++||||...|.+|.++.-.
T Consensus 218 ~~tvvV~atsd~p~~~----r~----~a~~~a~aiAEyfrd~G~~VLlv~Dd 261 (501)
T TIGR00962 218 DYTIVVAATASDSASL----QY----LAPYTGCTMAEYFRDNGKHALIIYDD 261 (501)
T ss_pred ceeEEEEecCCCCHHH----HH----HHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 4556666655554544 33 24568999999999999999999754
No 388
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=49.97 E-value=24 Score=35.09 Aligned_cols=30 Identities=17% Similarity=0.091 Sum_probs=23.4
Q ss_pred eEEecCccchhHHHHHHHHHHCCCEEEEEe
Q 027330 63 RYIDNFSSGHRGAASTEHLIKMGYAVIFLY 92 (225)
Q Consensus 63 RfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~ 92 (225)
|.+=-=++|..|.++++++..+|+.|.+..
T Consensus 382 kiLVtGa~G~iG~~l~~~L~~~g~~v~~~~ 411 (668)
T PLN02260 382 KFLIYGRTGWIGGLLGKLCEKQGIAYEYGK 411 (668)
T ss_pred eEEEECCCchHHHHHHHHHHhCCCeEEeec
Confidence 333335689999999999999999996433
No 389
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=49.47 E-value=27 Score=34.48 Aligned_cols=44 Identities=23% Similarity=0.389 Sum_probs=33.0
Q ss_pred CceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 43 ~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.+-|+|.+-+..-|.. |++ +...|.++||||..+|.+|.++.-.
T Consensus 219 ~~tvvV~atsd~p~~~----r~~----ap~~a~aiAEyfrd~G~~VLlv~Dd 262 (497)
T TIGR03324 219 DYTIVVVTEGNDPPGL----QYI----APYAATSIGEHFMEQGRDVLIVYDD 262 (497)
T ss_pred ceeEEEEeCCCCCHHH----HHH----HHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 4567777666665655 333 3568999999999999999999854
No 390
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=49.40 E-value=30 Score=30.31 Aligned_cols=38 Identities=26% Similarity=0.229 Sum_probs=31.6
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
+.|++|++|+-|. ..|.+++..+.+.|+.||-+.|+..
T Consensus 5 laG~~vlvTgaga------------------GIG~~~v~~La~aGA~ViAvaR~~a 42 (245)
T KOG1207|consen 5 LAGVIVLVTGAGA------------------GIGKEIVLSLAKAGAQVIAVARNEA 42 (245)
T ss_pred ccceEEEeecccc------------------cccHHHHHHHHhcCCEEEEEecCHH
Confidence 4789999998442 3489999999999999999999853
No 391
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=49.30 E-value=17 Score=33.47 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=24.0
Q ss_pred CccchhHHHHHHHHHHCCCEEEEEe
Q 027330 68 FSSGHRGAASTEHLIKMGYAVIFLY 92 (225)
Q Consensus 68 fSSG~~Ga~iAe~fl~~G~~Vi~l~ 92 (225)
.+||..|.++|-.+..+||.++++.
T Consensus 68 ~TSGNTGI~LA~vaa~~Gy~~iivm 92 (300)
T COG0031 68 ATSGNTGIALAMVAAAKGYRLIIVM 92 (300)
T ss_pred cCCChHHHHHHHHHHHcCCcEEEEe
Confidence 7999999999999999999999987
No 392
>COG1798 DPH5 Diphthamide biosynthesis methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=49.19 E-value=46 Score=30.16 Aligned_cols=69 Identities=14% Similarity=0.195 Sum_probs=45.1
Q ss_pred hHHhhhccCCCCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCE
Q 027330 8 EIESFFDSAPPLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYA 87 (225)
Q Consensus 8 ~~~~ff~~~~~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~ 87 (225)
.+++++.....+-+.+++.+.=..++.+.. .+.++++|.|-.-+.= .=+.+.-.+.++|+.
T Consensus 45 ~le~~~gkev~~~~R~dlE~~~~~il~~a~----~~~Vall~~GDpmvAT---------------TH~~L~~~A~~~Gi~ 105 (260)
T COG1798 45 KLEELIGKEVILLDREDLEENSRSILDRAK----DKDVALLVAGDPMVAT---------------THVDLRIEAKRRGIE 105 (260)
T ss_pred HHHHHhCCceEeccHHHHhhcchhHHHHHh----cCCEEEEecCCcceeh---------------hHHHHHHHHHHcCCc
Confidence 567777777777777777776333554432 4559999999765442 235566666677777
Q ss_pred EEEEeecC
Q 027330 88 VIFLYRRG 95 (225)
Q Consensus 88 Vi~l~r~~ 95 (225)
|-+||+.+
T Consensus 106 v~vIh~~S 113 (260)
T COG1798 106 VRVIHGAS 113 (260)
T ss_pred EEEEcccH
Confidence 77777653
No 393
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=48.77 E-value=29 Score=33.22 Aligned_cols=45 Identities=20% Similarity=0.244 Sum_probs=33.3
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
-.+-|+|.+=.-.-|.+ - .-+...|.++||||...|++|.++.-.
T Consensus 191 ~~~tvvv~~tsd~~~~~--r------~~a~~~a~tiAEyfr~~G~~Vll~~Ds 235 (411)
T TIGR03496 191 LARSVVVAATADESPLM--R------LRAAFYATAIAEYFRDQGKDVLLLMDS 235 (411)
T ss_pred cceEEEEEECCCCCHHH--H------HHHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 34566666655555666 2 345778999999999999999999844
No 394
>TIGR03253 oxalate_frc formyl-CoA transferase. This enzyme, formyl-CoA transferase, transfers coenzyme A from formyl-CoA to oxalate. It forms a pathway, together with oxalyl-CoA decarboxylase, for oxalate degradation; decarboxylation by the latter gene regenerates formyl-CoA. The two enzymes typically are encoded by a two-gene operon.
Probab=48.76 E-value=23 Score=33.62 Aligned_cols=37 Identities=30% Similarity=0.491 Sum_probs=34.5
Q ss_pred eecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 55 VPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 55 epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.||+ .||.|| +|+..-|...+..|...||+||=|-.+
T Consensus 2 ~pL~--GirVld-ls~~~aGP~a~~lLAdlGAeVIKVE~p 38 (415)
T TIGR03253 2 KPLD--GIKVLD-FTHVQSGPSCTQMLAWLGADVIKIERP 38 (415)
T ss_pred CCCC--CCEEEE-eCcHHHHHHHHHHHHHcCCcEEEeCCC
Confidence 5899 999999 899999999999999999999999977
No 395
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=48.67 E-value=19 Score=32.36 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=21.6
Q ss_pred cchhHHHHHHHHHHCCCEEEEEee
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYR 93 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r 93 (225)
.|.||..+|..+++.|+.|++..+
T Consensus 8 lG~MG~~ma~~L~~~G~~v~v~~~ 31 (292)
T PRK15059 8 LGIMGTPMAINLARAGHQLHVTTI 31 (292)
T ss_pred cCHHHHHHHHHHHHCCCeEEEEeC
Confidence 799999999999999999986654
No 396
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=48.60 E-value=23 Score=30.89 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=23.3
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.|--|.++|-++.++|++|++|-+.
T Consensus 7 aGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 7 AGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp TSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred cCHHHHHHHHHHHHCCCeEEEEeec
Confidence 4788999999999999999999977
No 397
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=48.51 E-value=18 Score=33.77 Aligned_cols=34 Identities=32% Similarity=0.516 Sum_probs=28.5
Q ss_pred CCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 59 QRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 59 ~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
++.|=||. .|.||..+|..+++.||.|+.--|.-
T Consensus 35 ~~~iGFIG---LG~MG~~M~~nLik~G~kVtV~dr~~ 68 (327)
T KOG0409|consen 35 KTRIGFIG---LGNMGSAMVSNLIKAGYKVTVYDRTK 68 (327)
T ss_pred cceeeEEe---eccchHHHHHHHHHcCCEEEEEeCcH
Confidence 34666776 89999999999999999999877653
No 398
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=48.12 E-value=31 Score=31.52 Aligned_cols=66 Identities=15% Similarity=0.186 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCC------CeeEEecCccchhHHHHHHHHHHCCCEEEEEee
Q 027330 23 AAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQR------CVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (225)
Q Consensus 23 ~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~------~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r 93 (225)
+++.+.+.+|+.- .....|++|+|++++.|+.- +-+-.++..+|..|...++.+.+.|.+|.++.-
T Consensus 47 ~~~r~~l~~l~~~-----~~~~~vvf~~gs~T~a~~~~~~~l~~~~~~~~~i~~g~~~~~~~~~a~~~g~~~~~~~~ 118 (355)
T cd00611 47 NEAESDLRELLNI-----PDNYKVLFLQGGATGQFAAVPLNLLGDKGTADYVVTGAWSAKAAKEAKRYGGVVVIVAA 118 (355)
T ss_pred HHHHHHHHHHhCC-----CCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHhcCCCcEEEec
Confidence 3444455555531 13458999999777776611 111345567799998888888888999999874
No 399
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=47.99 E-value=22 Score=28.75 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecC
Q 027330 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLE 58 (225)
Q Consensus 18 ~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID 58 (225)
.|.+.++|.+.+++.+.. .+--++||+||+..-=+
T Consensus 42 v~Dd~~~i~~~l~~~~~~------~~~DlVittGG~s~g~~ 76 (152)
T cd00886 42 VPDDKDEIREALIEWADE------DGVDLILTTGGTGLAPR 76 (152)
T ss_pred cCCCHHHHHHHHHHHHhc------CCCCEEEECCCcCCCCC
Confidence 577889999888876541 13358888899877555
No 400
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.77 E-value=71 Score=29.29 Aligned_cols=55 Identities=11% Similarity=0.040 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 18 ~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.|-.+..+.+.++.+ +. ...||+|+|...+. .-|.-+|..|+.+|+.|+..|.++
T Consensus 144 ~PcTp~av~~ll~~~---~i--~l~Gk~vvViGrs~------------------iVGkPla~lL~~~~atVtv~hs~T 198 (287)
T PRK14176 144 VPCTPHGVIRALEEY---GV--DIEGKNAVIVGHSN------------------VVGKPMAAMLLNRNATVSVCHVFT 198 (287)
T ss_pred CCCcHHHHHHHHHHc---CC--CCCCCEEEEECCCc------------------ccHHHHHHHHHHCCCEEEEEeccC
Confidence 566788888777664 22 24899998876553 348899999999999999999654
No 401
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=47.72 E-value=20 Score=30.97 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=22.5
Q ss_pred ccchhHHHHHHHHHHCC--CEEEEEeec
Q 027330 69 SSGHRGAASTEHLIKMG--YAVIFLYRR 94 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G--~~Vi~l~r~ 94 (225)
.||..|.++++.|+++| +.|+.+.+.
T Consensus 7 atG~iG~~l~~~l~~~~~~~~v~~~~~~ 34 (317)
T TIGR01181 7 GAGFIGSNFVRYILNEHPDAEVIVLDKL 34 (317)
T ss_pred CCchHHHHHHHHHHHhCCCCEEEEecCC
Confidence 47999999999999988 889988753
No 402
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.67 E-value=65 Score=29.42 Aligned_cols=55 Identities=16% Similarity=0.124 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 18 ~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.|-.+..+.+-++.+ +. ...||+|+|-..+.. -|.-+|..|+++|+.|+..|+++
T Consensus 138 ~PcTp~aii~lL~~y---~i--~l~Gk~vvViGrS~~------------------VGkPla~lL~~~~ATVt~chs~T 192 (282)
T PRK14180 138 ESCTPKGIMTMLREY---GI--KTEGAYAVVVGASNV------------------VGKPVSQLLLNAKATVTTCHRFT 192 (282)
T ss_pred CCCCHHHHHHHHHHh---CC--CCCCCEEEEECCCCc------------------chHHHHHHHHHCCCEEEEEcCCC
Confidence 566888888777664 22 248988888765543 48889999999999999999765
No 403
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=47.67 E-value=69 Score=25.98 Aligned_cols=38 Identities=16% Similarity=0.111 Sum_probs=28.5
Q ss_pred CCeeEEecCccchhHHHHHHHH----HHCCCEEEEEeecCCCC
Q 027330 60 RCVRYIDNFSSGHRGAASTEHL----IKMGYAVIFLYRRGTCE 98 (225)
Q Consensus 60 ~~VRfI~NfSSG~~Ga~iAe~f----l~~G~~Vi~l~r~~s~~ 98 (225)
.+-||+.+.+ |.||.++.-+. ...+-.|+.+.|.++..
T Consensus 39 ~~~~~~~~~~-g~mG~~lp~aiGaala~~~~~vv~i~GDG~f~ 80 (178)
T cd02002 39 RPGSYFTLRG-GGLGWGLPAAVGAALANPDRKVVAIIGDGSFM 80 (178)
T ss_pred CCCCeeccCC-ccccchHHHHHHHHhcCCCCeEEEEEcCchhh
Confidence 4779999988 99997664433 23467899999999853
No 404
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=47.63 E-value=23 Score=33.06 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=30.0
Q ss_pred CeeEEecCccchhHH-----HHHHHHHHCCCEEEEEeec
Q 027330 61 CVRYIDNFSSGHRGA-----ASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 61 ~VRfI~NfSSG~~Ga-----~iAe~fl~~G~~Vi~l~r~ 94 (225)
||=.|.|.+.|..|. .+|+++.++|+.|-+|+|-
T Consensus 57 PVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRG 95 (338)
T PRK01906 57 PVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVSRG 95 (338)
T ss_pred CEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEecC
Confidence 888999999998885 5799999999999999864
No 405
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=47.02 E-value=24 Score=28.31 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceee
Q 027330 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTV 55 (225)
Q Consensus 18 ~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~e 55 (225)
.+.+.++|.+.+++.+. +--++||+|||..
T Consensus 49 v~Dd~~~i~~~l~~~~~--------~~DliIttGG~g~ 78 (144)
T TIGR00177 49 VPDDPEEIREILRKAVD--------EADVVLTTGGTGV 78 (144)
T ss_pred cCCCHHHHHHHHHHHHh--------CCCEEEECCCCCC
Confidence 56688888888877653 2357888899876
No 406
>PRK08149 ATP synthase SpaL; Validated
Probab=46.93 E-value=28 Score=33.64 Aligned_cols=44 Identities=11% Similarity=0.175 Sum_probs=33.5
Q ss_pred CceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 43 ~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.+.++|-+-.-.-|+. | ..+..+|.++||+|...|++|.++.-.
T Consensus 206 ~~~~vV~~~sd~p~~~----r----~~a~~~a~tiAE~fr~~G~~Vll~~Ds 249 (428)
T PRK08149 206 EKCVLVYATSDFSSVD----R----CNAALVATTVAEYFRDQGKRVVLFIDS 249 (428)
T ss_pred cceEEEEECCCCCHHH----H----HhHHHHHHHHHHHHHHcCCCEEEEccc
Confidence 4567777766655655 2 256788999999999999999998743
No 407
>PRK06936 type III secretion system ATPase; Provisional
Probab=46.81 E-value=23 Score=34.38 Aligned_cols=44 Identities=20% Similarity=0.302 Sum_probs=31.3
Q ss_pred CceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 43 ~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.+.|+|.+=.-.-|+. | ..+..+|.++||||...|++|.++.-.
T Consensus 217 ~rtvvv~atsd~p~~~----R----~~a~~~a~tiAEyfrd~G~~Vll~~Ds 260 (439)
T PRK06936 217 RKAVLVVATSDRPSME----R----AKAGFVATSIAEYFRDQGKRVLLLMDS 260 (439)
T ss_pred ceeEEEEECCCCCHHH----H----HHHHHHHHHHHHHHHHcCCCEEEeccc
Confidence 3455665555444554 2 245678999999999999999999854
No 408
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.75 E-value=1.3e+02 Score=27.48 Aligned_cols=56 Identities=13% Similarity=0.109 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 18 ~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
.|-.+..+.+-++.+ +. ...||+|+|-..+ +.-|.-+|..|+.+|+.|+..|+++.
T Consensus 135 ~PcTp~avi~lL~~~---~i--~l~Gk~vvViGrS------------------~iVGkPla~lL~~~~aTVtichs~T~ 190 (287)
T PRK14173 135 EPCTPAGVVRLLKHY---GI--PLAGKEVVVVGRS------------------NIVGKPLAALLLREDATVTLAHSKTQ 190 (287)
T ss_pred CCCCHHHHHHHHHHc---CC--CCCCCEEEEECCC------------------CccHHHHHHHHHHCCCEEEEeCCCCC
Confidence 566788887777654 22 2488888886543 44588999999999999999997753
No 409
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=46.67 E-value=23 Score=31.79 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=24.2
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
-.|.+|..+|-.|.+.|++|+++.|..
T Consensus 12 G~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 12 GTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 468999999999999999999999853
No 410
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=46.65 E-value=2.1e+02 Score=25.44 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=25.1
Q ss_pred CccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 68 FSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 68 fSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.|+|..|.++|-++...|..++.+...+
T Consensus 64 aSsGN~g~alA~~a~~~G~~~~i~vp~~ 91 (299)
T TIGR01136 64 ATSGNTGIALAMVAAAKGYKLILTMPET 91 (299)
T ss_pred eCCChHHHHHHHHHHHcCCcEEEEECCC
Confidence 8999999999999999999988887544
No 411
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=46.62 E-value=24 Score=30.70 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=22.3
Q ss_pred ccchhHHHHHHHHHHCCC-EEEEEeecC
Q 027330 69 SSGHRGAASTEHLIKMGY-AVIFLYRRG 95 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~-~Vi~l~r~~ 95 (225)
-||..|..+|+.|.++|+ .|+.+.++.
T Consensus 6 atG~iG~~l~~~L~~~g~~~v~~~~~~~ 33 (314)
T TIGR02197 6 GAGFIGSNLVKALNERGITDILVVDNLR 33 (314)
T ss_pred CcchhhHHHHHHHHHcCCceEEEEecCC
Confidence 378999999999999998 687776543
No 412
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=46.52 E-value=32 Score=33.63 Aligned_cols=60 Identities=13% Similarity=0.058 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHH-CCCEEEEEeec
Q 027330 23 AAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIK-MGYAVIFLYRR 94 (225)
Q Consensus 23 ~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~-~G~~Vi~l~r~ 94 (225)
.|+.+-+++++... .-.+-|+|-+-.-.-|+. - ..+..+|.++||||.. .|++|.++.-.
T Consensus 186 rEv~efi~~~~~~~----~l~rsvvV~atsd~p~~~--r------~~a~~~a~tiAEyfrd~~G~~VLll~Ds 246 (463)
T PRK09280 186 REGNDLYHEMKESG----VLDKTALVFGQMNEPPGA--R------LRVALTGLTMAEYFRDVEGQDVLLFIDN 246 (463)
T ss_pred HHHHHHHHHHHhcC----CcceeEEEEECCCCCHHH--H------HHHHHHHHHHHHHHHHhcCCceEEEecc
Confidence 44444455554322 134455555544443444 2 2356789999999999 99999999854
No 413
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=46.45 E-value=14 Score=29.61 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=24.0
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
-.|+.|.+++.+|.+.||.|.-++.+.
T Consensus 17 GaGrVG~~La~aL~~ag~~v~~v~srs 43 (127)
T PF10727_consen 17 GAGRVGTALARALARAGHEVVGVYSRS 43 (127)
T ss_dssp CTSCCCCHHHHHHHHTTSEEEEESSCH
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 369999999999999999999998654
No 414
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=46.29 E-value=28 Score=33.43 Aligned_cols=44 Identities=23% Similarity=0.291 Sum_probs=32.8
Q ss_pred CceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 43 ~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.+-|+|-+-...-|++ | .-...+|.++||||...|.+|.++.-.
T Consensus 195 ~~tvvv~atsd~~~~~----r----~~a~~~a~~iAEyfrd~G~~Vll~~Ds 238 (418)
T TIGR03498 195 KRSVVVVATSDESPLM----R----RQAAYTATAIAEYFRDQGKDVLLLMDS 238 (418)
T ss_pred ceeEEEEECCCCCHHH----H----HHHHHHHHHHHHHHHHcCCCEEEeccc
Confidence 4566676666655666 2 335678999999999999999999743
No 415
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=46.16 E-value=48 Score=31.61 Aligned_cols=51 Identities=20% Similarity=0.164 Sum_probs=37.2
Q ss_pred CCceEEEecCceeeecCCCCeeE-------EecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRY-------IDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRf-------I~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
++..+++++.||..-=- .|.. +=+.+.|+-|...++-+-..|++|..+.-+
T Consensus 55 ~~~~~ll~gsGt~amEA--av~sl~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~ 112 (383)
T COG0075 55 NGDVVLLSGSGTLAMEA--AVASLVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVE 112 (383)
T ss_pred CCcEEEEcCCcHHHHHH--HHHhccCCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCC
Confidence 45788888888854222 2222 223578999999999999999999999854
No 416
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.14 E-value=92 Score=28.40 Aligned_cols=55 Identities=11% Similarity=0.059 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 18 ~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.|-.+..+.+-++.+ +. ...||+|+|-..+. .-|.-+|..|+++|+.|+..|+++
T Consensus 138 ~PcTp~av~~lL~~~---~i--~l~Gk~vvViGrS~------------------~VGkPla~lL~~~~AtVt~chs~T 192 (278)
T PRK14172 138 LPCTPNSVITLIKSL---NI--DIEGKEVVVIGRSN------------------IVGKPVAQLLLNENATVTICHSKT 192 (278)
T ss_pred cCCCHHHHHHHHHHh---CC--CCCCCEEEEECCCc------------------cchHHHHHHHHHCCCEEEEeCCCC
Confidence 455777777666654 22 24888888876544 448889999999999999999764
No 417
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=45.88 E-value=31 Score=33.55 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=33.2
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHH-CCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIK-MGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~-~G~~Vi~l~r~ 94 (225)
-.+.|+|.+-.-.-|+. - ..+..+|.++||||.. .|++|.++.-.
T Consensus 195 l~rtvvv~~ts~~~~~~--r------~~~~~~a~tiAEyfrd~~G~~VLl~~Ds 240 (449)
T TIGR03305 195 LDNTVMVFGQMNEPPGA--R------FRVGHTALTMAEYFRDDEKQDVLLLIDN 240 (449)
T ss_pred cceEEEEEeCCCCCHHH--H------HHHHHHHHHHHHHHHHhcCCceEEEecC
Confidence 34566666655555666 2 3456899999999998 99999999754
No 418
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=45.88 E-value=20 Score=33.49 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=23.1
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..|.||..+|..|.++|+.|+..-+.
T Consensus 106 G~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 106 GKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred CCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 36999999999999999999888754
No 419
>PLN02503 fatty acyl-CoA reductase 2
Probab=45.81 E-value=32 Score=34.61 Aligned_cols=37 Identities=11% Similarity=0.207 Sum_probs=30.3
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCC---EEEEEeecCC
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGY---AVIFLYRRGT 96 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~---~Vi~l~r~~s 96 (225)
+||.|+||.| ||-.|..++|.+++.+. .|++|.|+..
T Consensus 118 ~~k~VlVTGa------------------TGFLGk~LlekLLr~~~~v~kIy~LvR~k~ 157 (605)
T PLN02503 118 RGKNFLITGA------------------TGFLAKVLIEKILRTNPDVGKIYLLIKAKD 157 (605)
T ss_pred cCCEEEEcCC------------------chHHHHHHHHHHHHhCCCCcEEEEEEecCC
Confidence 6889999875 79999999999998775 4688887643
No 420
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=45.71 E-value=59 Score=30.65 Aligned_cols=29 Identities=17% Similarity=0.190 Sum_probs=23.3
Q ss_pred chhHHHHHHHHHHCCCEEEEEeecCCCCC
Q 027330 71 GHRGAASTEHLIKMGYAVIFLYRRGTCEP 99 (225)
Q Consensus 71 G~~Ga~iAe~fl~~G~~Vi~l~r~~s~~P 99 (225)
|-.|..+|..|.+.|.+|+++++...+.|
T Consensus 157 G~ig~E~A~~l~~~g~~Vtli~~~~~l~~ 185 (438)
T PRK13512 157 GYISLEVLENLYERGLHPTLIHRSDKINK 185 (438)
T ss_pred CHHHHHHHHHHHhCCCcEEEEecccccch
Confidence 44688899999999999999998655444
No 421
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=45.66 E-value=22 Score=32.82 Aligned_cols=34 Identities=26% Similarity=0.277 Sum_probs=30.0
Q ss_pred CeeEEecCccchhHH-----HHHHHHHHCCCEEEEEeec
Q 027330 61 CVRYIDNFSSGHRGA-----ASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 61 ~VRfI~NfSSG~~Ga-----~iAe~fl~~G~~Vi~l~r~ 94 (225)
||=.|.|.+.|..|. .+|++|.++|+.|-+|+|-
T Consensus 36 pVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRG 74 (326)
T PF02606_consen 36 PVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILSRG 74 (326)
T ss_pred cEEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEcCC
Confidence 888999999988884 6799999999999999874
No 422
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=45.43 E-value=21 Score=34.60 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=22.5
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.|.||..+|..++++|+.|+...|.
T Consensus 7 LG~MG~~mA~nL~~~G~~V~v~drt 31 (467)
T TIGR00873 7 LAVMGSNLALNMADHGFTVSVYNRT 31 (467)
T ss_pred eHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 6999999999999999999887654
No 423
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=45.27 E-value=32 Score=33.28 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=23.3
Q ss_pred CccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 68 FSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 68 fSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.-+..+|.++||||...|++|.++.-.
T Consensus 227 ~~a~~~a~tiAEyfrd~G~~VLl~~Ds 253 (433)
T PRK07594 227 VRALFVATTIAEFFRDNGKRVVLLADS 253 (433)
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEEEeC
Confidence 445778999999999999999999854
No 424
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.22 E-value=1.1e+02 Score=28.04 Aligned_cols=56 Identities=18% Similarity=0.096 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 18 ~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
.|-.+..+.+-++.+ +.+ ..||+|+|-..+. .-|.-+|..++.+|+.|+..|.++.
T Consensus 139 ~PcTp~avi~ll~~y---~i~--l~Gk~vvViGrS~------------------iVGkPla~lL~~~~atVt~chs~T~ 194 (284)
T PRK14177 139 LPCTPYGMVLLLKEY---GID--VTGKNAVVVGRSP------------------ILGKPMAMLLTEMNATVTLCHSKTQ 194 (284)
T ss_pred CCCCHHHHHHHHHHh---CCC--CCCCEEEEECCCC------------------cchHHHHHHHHHCCCEEEEeCCCCC
Confidence 466788888766654 222 5888888865543 4488999999999999999997653
No 425
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=45.20 E-value=19 Score=32.49 Aligned_cols=34 Identities=18% Similarity=0.114 Sum_probs=28.4
Q ss_pred ceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEe
Q 027330 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLY 92 (225)
Q Consensus 44 ~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~ 92 (225)
++|+|++|||.--|= ++.+|+++.++|+++.++.
T Consensus 2 ~ki~i~~Ggt~G~i~---------------~a~l~~~L~~~~~~~~~~~ 35 (380)
T PRK00025 2 LRIAIVAGEVSGDLL---------------GAGLIRALKARAPNLEFVG 35 (380)
T ss_pred ceEEEEecCcCHHHH---------------HHHHHHHHHhcCCCcEEEE
Confidence 589999999998887 5669999998877777776
No 426
>PRK03525 crotonobetainyl-CoA:carnitine CoA-transferase; Provisional
Probab=45.18 E-value=29 Score=32.90 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=34.6
Q ss_pred ecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 56 PLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 56 pID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
||+ .||.|| +|+..-|...+..|...||+||=|-.++
T Consensus 11 pL~--GirVld-ls~~~aGP~a~~lLAdlGAeVIKVE~p~ 47 (405)
T PRK03525 11 PLA--GLRVVF-SGIEIAGPFAGQMFAEWGAEVIWIENVA 47 (405)
T ss_pred CCC--CCEEEE-ecchhHHHHHHHHHHHcCCcEEEECCCC
Confidence 899 999998 9999999999999999999999999764
No 427
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.99 E-value=1.5e+02 Score=27.14 Aligned_cols=55 Identities=16% Similarity=0.090 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 18 ~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.|-.+..+.+-++.+ +. ...||+|+|-..+. .-|.-+|..++++|+.|+..|.++
T Consensus 137 ~PcTp~avi~lL~~~---~i--~l~Gk~vvVvGrS~------------------iVGkPla~lL~~~~atVtichs~T 191 (284)
T PRK14170 137 VPCTPAGIIELIKST---GT--QIEGKRAVVIGRSN------------------IVGKPVAQLLLNENATVTIAHSRT 191 (284)
T ss_pred CCCCHHHHHHHHHHh---CC--CCCCCEEEEECCCC------------------cchHHHHHHHHHCCCEEEEeCCCC
Confidence 566788887776654 22 24888888876544 348889999999999999999765
No 428
>PRK14982 acyl-ACP reductase; Provisional
Probab=44.92 E-value=38 Score=31.69 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=27.1
Q ss_pred CCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHC-C-CEEEEEee
Q 027330 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKM-G-YAVIFLYR 93 (225)
Q Consensus 41 ~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~-G-~~Vi~l~r 93 (225)
+.+++|+||. .+|.+|..+|+.++.+ | ..|+++.|
T Consensus 153 l~~k~VLVtG------------------AtG~IGs~lar~L~~~~gv~~lilv~R 189 (340)
T PRK14982 153 LSKATVAVVG------------------ATGDIGSAVCRWLDAKTGVAELLLVAR 189 (340)
T ss_pred cCCCEEEEEc------------------cChHHHHHHHHHHHhhCCCCEEEEEcC
Confidence 4677888876 4589999999999865 5 57777764
No 429
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=44.79 E-value=23 Score=31.18 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=23.3
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEee
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYR 93 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r 93 (225)
-.|.+|..+|-.+.+.|++|+++.|
T Consensus 7 G~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 7 GAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEec
Confidence 4799999999999999999999988
No 430
>PRK08246 threonine dehydratase; Provisional
Probab=44.71 E-value=1.6e+02 Score=26.52 Aligned_cols=32 Identities=16% Similarity=0.131 Sum_probs=26.8
Q ss_pred EEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 64 YIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 64 fI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
-|-=.|+|..|.++|-++...|+.++++..+.
T Consensus 70 ~vv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~ 101 (310)
T PRK08246 70 GVVAASGGNAGLAVAYAAAALGVPATVFVPET 101 (310)
T ss_pred eEEEeCCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 34446999999999999999999998888544
No 431
>PRK05922 type III secretion system ATPase; Validated
Probab=44.56 E-value=22 Score=34.45 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=31.2
Q ss_pred CceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 43 ~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.+.++|-+=.-.-|+. .+ -...+|.++||||...|++|.++.-.
T Consensus 212 ~rTVlv~atsd~~~~~--r~------~a~~~a~tiAEyfrd~G~~VLl~~Ds 255 (434)
T PRK05922 212 QRTIIIASPAHETAPT--KV------IAGRAAMTIAEYFRDQGHRVLFIMDS 255 (434)
T ss_pred cceEEEEECCCCCHHH--HH------HHHHHHHHHHHHHHHcCCCEEEeccc
Confidence 3456665555555555 22 34667999999999999999999843
No 432
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=44.06 E-value=26 Score=31.34 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.8
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
-.|.||..+|..+++.|+.|++..+.
T Consensus 7 GlG~MG~~mA~~L~~~g~~v~v~dr~ 32 (301)
T PRK09599 7 GLGRMGGNMARRLLRGGHEVVGYDRN 32 (301)
T ss_pred cccHHHHHHHHHHHHCCCeEEEEECC
Confidence 37999999999999999999877654
No 433
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=44.02 E-value=26 Score=31.51 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=22.4
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.|-.|.++|-++.++|.+|++|-+.
T Consensus 11 gGi~G~s~A~~L~~~g~~V~lie~~ 35 (376)
T PRK11259 11 LGSMGSAAGYYLARRGLRVLGLDRF 35 (376)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEecc
Confidence 3678999999999999999999865
No 434
>PRK11430 putative CoA-transferase; Provisional
Probab=43.90 E-value=32 Score=32.41 Aligned_cols=37 Identities=32% Similarity=0.393 Sum_probs=34.8
Q ss_pred ecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 56 PLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 56 pID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
||+ .||.|| +|+..-|...+..|...||+||=|-.++
T Consensus 9 pL~--GirVld-ls~~~aGP~a~~~LAdlGAeVIKVE~p~ 45 (381)
T PRK11430 9 PFE--GLLVID-MTHVLNGPFGTQLLCNMGARVIKVEPPG 45 (381)
T ss_pred CcC--CCEEEE-eCCcchHHHHHHHHHHcCCCEEEECCCC
Confidence 899 999999 8999999999999999999999999774
No 435
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=43.90 E-value=30 Score=31.84 Aligned_cols=34 Identities=32% Similarity=0.267 Sum_probs=29.7
Q ss_pred CeeEEecCccchhHH-----HHHHHHHHCCCEEEEEeec
Q 027330 61 CVRYIDNFSSGHRGA-----ASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 61 ~VRfI~NfSSG~~Ga-----~iAe~fl~~G~~Vi~l~r~ 94 (225)
||=.|.|.+-|..|. .+|+++.++|+.|-+|+|-
T Consensus 29 PVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRG 67 (311)
T TIGR00682 29 PVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLSRG 67 (311)
T ss_pred CEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEECCC
Confidence 788999999888885 5799999999999999964
No 436
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=43.57 E-value=27 Score=31.33 Aligned_cols=25 Identities=24% Similarity=0.209 Sum_probs=21.9
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.|.||..+|..++++|+.|+..-|.
T Consensus 8 lG~mG~~la~~L~~~g~~V~~~dr~ 32 (298)
T TIGR00872 8 LGRMGANIVRRLAKRGHDCVGYDHD 32 (298)
T ss_pred chHHHHHHHHHHHHCCCEEEEEECC
Confidence 6999999999999999999875543
No 437
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=43.50 E-value=2.3e+02 Score=24.99 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=25.4
Q ss_pred CccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 68 FSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 68 fSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
-|+|..|.++|-++...|..++.+..+.
T Consensus 59 ~SsGN~g~alA~~a~~~G~~~~i~vp~~ 86 (291)
T cd01561 59 PTSGNTGIGLAMVAAAKGYRFIIVMPET 86 (291)
T ss_pred eCCChHHHHHHHHHHHcCCeEEEEECCC
Confidence 6999999999999999999998888654
No 438
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=43.20 E-value=49 Score=33.69 Aligned_cols=33 Identities=18% Similarity=0.093 Sum_probs=27.7
Q ss_pred CeeEEecCccchhHHHHHHHHH-HCCCEEEEEee
Q 027330 61 CVRYIDNFSSGHRGAASTEHLI-KMGYAVIFLYR 93 (225)
Q Consensus 61 ~VRfI~NfSSG~~Ga~iAe~fl-~~G~~Vi~l~r 93 (225)
+++-|.=.=.|.||..||..|+ ..|+.|+++-.
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~ 341 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDI 341 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeC
Confidence 5666666678999999999999 88999999764
No 439
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=43.18 E-value=27 Score=30.37 Aligned_cols=61 Identities=15% Similarity=0.239 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 22 RAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 22 ~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.+++.+-++++..... ..+.++|-+-...-|.. |+ -+..+|.++||+|...|.+|.++.-.
T Consensus 53 ~~Ev~~~~~~~~~~~~----~~~t~vv~~t~~~~~~~----r~----~~~~~a~t~AEyfrd~G~dVlli~Ds 113 (215)
T PF00006_consen 53 GREVTEFIEELKGEGA----LERTVVVAATSDEPPAA----RY----RAPYTALTIAEYFRDQGKDVLLIIDS 113 (215)
T ss_dssp HHHHHHHHHHHHHTTG----GGGEEEEEEETTS-HHH----HH----HHHHHHHHHHHHHHHTTSEEEEEEET
T ss_pred chhHHHHHHHHhhccc----ccccccccccchhhHHH----Hh----hhhccchhhhHHHhhcCCceeehhhh
Confidence 4555555555533221 33445555544444433 22 24568999999999999999998844
No 440
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.00 E-value=1.1e+02 Score=28.15 Aligned_cols=56 Identities=11% Similarity=0.073 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 18 ~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
.|-.+..+.+-++.+ +. +..||+|+|-..+. .-|.-+|..|+++|+.|+..|.++.
T Consensus 139 ~PcTp~av~~lL~~y---~i--~l~GK~vvViGrS~------------------iVGkPla~lL~~~~ATVtichs~T~ 194 (288)
T PRK14171 139 IPCTALGCLAVIKKY---EP--NLTGKNVVIIGRSN------------------IVGKPLSALLLKENCSVTICHSKTH 194 (288)
T ss_pred cCCCHHHHHHHHHHh---CC--CCCCCEEEEECCCC------------------cchHHHHHHHHHCCCEEEEeCCCCC
Confidence 456777777666654 22 25888888866543 4488999999999999999997653
No 441
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.69 E-value=84 Score=28.73 Aligned_cols=55 Identities=13% Similarity=0.093 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 18 ~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.|-.+..+.+-++.+ +.+ ..||+|+|-..+. .-|.-+|..|+++|+.|+..|+++
T Consensus 137 ~PcTp~avi~lL~~y---~i~--l~Gk~vvVvGrS~------------------iVGkPla~lL~~~~atVt~chs~T 191 (282)
T PRK14166 137 LPCTPLGVMKLLKAY---EID--LEGKDAVIIGASN------------------IVGRPMATMLLNAGATVSVCHIKT 191 (282)
T ss_pred cCCCHHHHHHHHHHh---CCC--CCCCEEEEECCCC------------------cchHHHHHHHHHCCCEEEEeCCCC
Confidence 566888888777664 222 4888888865443 448899999999999999999765
No 442
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.55 E-value=1.8e+02 Score=26.85 Aligned_cols=56 Identities=14% Similarity=0.029 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 18 ~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
.|-.+..+.+-++.+ +. ...||+|+|-..+ +.-|.-+|..|+.+|+.|+..|.++.
T Consensus 138 ~PcTp~aii~lL~~~---~i--~l~Gk~vvVIGrS------------------~iVGkPla~lL~~~~atVtv~hs~T~ 193 (297)
T PRK14186 138 RSCTPAGVMRLLRSQ---QI--DIAGKKAVVVGRS------------------ILVGKPLALMLLAANATVTIAHSRTQ 193 (297)
T ss_pred CCCCHHHHHHHHHHh---CC--CCCCCEEEEECCC------------------ccchHHHHHHHHHCCCEEEEeCCCCC
Confidence 456788887777664 22 2488888886554 34488999999999999999997753
No 443
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=42.50 E-value=29 Score=35.66 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=27.4
Q ss_pred CeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 61 CVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 61 ~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+|+-|.=-=.|.||..||..|+.+|+.|+++-..
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~ 367 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDAT 367 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCC
Confidence 5555555567999999999999999999987643
No 444
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=42.44 E-value=33 Score=25.74 Aligned_cols=25 Identities=12% Similarity=-0.004 Sum_probs=19.1
Q ss_pred chhHHHHHHHHHHCCCEEEEEeecC
Q 027330 71 GHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 71 G~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
+++-..+|+++.++|++|+++....
T Consensus 4 ~~~~~~l~~~L~~~G~~V~v~~~~~ 28 (160)
T PF13579_consen 4 ERYVRELARALAARGHEVTVVTPQP 28 (160)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEE--
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCC
Confidence 4566789999999999999998654
No 445
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=42.30 E-value=31 Score=29.30 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecC
Q 027330 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLE 58 (225)
Q Consensus 18 ~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID 58 (225)
.|.+.+.|...+.+++.+. --++||.|||-..-.
T Consensus 49 V~D~~~~I~~~l~~~~~~~-------~DvvlttGGTG~t~R 82 (169)
T COG0521 49 VPDDKEQIRATLIALIDED-------VDVVLTTGGTGITPR 82 (169)
T ss_pred eCCCHHHHHHHHHHHhcCC-------CCEEEEcCCccCCCC
Confidence 5778888988888887432 368999999965443
No 446
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=42.26 E-value=29 Score=33.67 Aligned_cols=44 Identities=20% Similarity=0.143 Sum_probs=31.2
Q ss_pred CceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 43 ~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.+.|+|-+=...-|+. | .-+..+|.++||||...|++|.++.-.
T Consensus 213 ~rsvvv~atsd~~~~~----r----~~a~~~a~tiAEyfrd~G~~Vll~~Ds 256 (442)
T PRK08927 213 ARSVVVVATSDEPALM----R----RQAAYLTLAIAEYFRDQGKDVLCLMDS 256 (442)
T ss_pred eeEEEEEECCCCCHHH----H----HHHHHHHHHHHHHHHHCCCcEEEEEeC
Confidence 3455555544444555 2 246788999999999999999999854
No 447
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=42.12 E-value=81 Score=26.64 Aligned_cols=39 Identities=18% Similarity=0.098 Sum_probs=29.7
Q ss_pred CCeeEEecCccchhHHHHHH----HHHHCCCEEEEEeecCCCC
Q 027330 60 RCVRYIDNFSSGHRGAASTE----HLIKMGYAVIFLYRRGTCE 98 (225)
Q Consensus 60 ~~VRfI~NfSSG~~Ga~iAe----~fl~~G~~Vi~l~r~~s~~ 98 (225)
.+-|||++..-|.||.++.- .+...+..|+.|.|.++..
T Consensus 37 ~~~~~~~~~~~gsmG~~lpaAiGa~la~p~~~vv~i~GDGsf~ 79 (205)
T cd02003 37 TPGGYHLEYGYSCMGYEIAAGLGAKLAKPDREVYVLVGDGSYL 79 (205)
T ss_pred CCCcEEcCCCcchhhhHHHHHHHHHHhCCCCeEEEEEccchhh
Confidence 36789998888999966643 3344567899999999864
No 448
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=42.09 E-value=23 Score=32.95 Aligned_cols=44 Identities=23% Similarity=0.282 Sum_probs=32.2
Q ss_pred CceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 43 ~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.+.++|-+-.-.-|.+ -+ -+..+|.++||+|...|.+|.++.-.
T Consensus 124 ~rtvvv~~t~d~~~~~--r~------~~~~~a~~~AEyfr~~g~~Vll~~Ds 167 (326)
T cd01136 124 KRSVVVVATSDESPLL--RV------KAAYTATAIAEYFRDQGKDVLLLMDS 167 (326)
T ss_pred ceEEEEEcCCCCCHHH--HH------HHHHHHHHHHHHHHHcCCCeEEEecc
Confidence 4566666655555555 32 24578999999999999999999854
No 449
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.09 E-value=1.2e+02 Score=27.80 Aligned_cols=55 Identities=7% Similarity=0.064 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 18 ~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.|-.+..+.+-++.+ +. ...||+|+|-..+ ..-|.-+|..|+.+|+.|+..|.++
T Consensus 136 ~PcTp~avi~lL~~~---~i--~l~Gk~vvViGrS------------------~iVGkPla~lL~~~~atVtichs~T 190 (282)
T PRK14169 136 VASTPYGIMALLDAY---DI--DVAGKRVVIVGRS------------------NIVGRPLAGLMVNHDATVTIAHSKT 190 (282)
T ss_pred CCCCHHHHHHHHHHh---CC--CCCCCEEEEECCC------------------ccchHHHHHHHHHCCCEEEEECCCC
Confidence 566788888777664 22 2488888886543 4458999999999999999999775
No 450
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=41.81 E-value=29 Score=30.70 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=22.0
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.|.||..+|..+++.|+.|++..+.
T Consensus 10 ~G~mG~~~a~~l~~~g~~v~~~d~~ 34 (296)
T PRK11559 10 LGIMGKPMSKNLLKAGYSLVVYDRN 34 (296)
T ss_pred cCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 7999999999999999999876543
No 451
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=41.63 E-value=25 Score=35.75 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=26.2
Q ss_pred CeeEEecCccchhHHHHHHHHH-HCCCEEEEEee
Q 027330 61 CVRYIDNFSSGHRGAASTEHLI-KMGYAVIFLYR 93 (225)
Q Consensus 61 ~VRfI~NfSSG~~Ga~iAe~fl-~~G~~Vi~l~r 93 (225)
+++-|.=.=+|.||..||..|+ ..|+.|+++-.
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~ 336 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDI 336 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeC
Confidence 4555555568999999999998 58999998663
No 452
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=41.62 E-value=1.2e+02 Score=28.06 Aligned_cols=55 Identities=15% Similarity=0.018 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 18 ~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.|-.+..+.+-++.+ +.+ ..||+|+|-.-+ ..-|.-+|..++++|+.|+..|.++
T Consensus 147 ~PcTp~avi~lL~~~---~i~--l~Gk~vvVIGRS------------------~iVGkPla~lL~~~~ATVtvchs~T 201 (299)
T PLN02516 147 LPCTPKGCLELLSRS---GIP--IKGKKAVVVGRS------------------NIVGLPVSLLLLKADATVTVVHSRT 201 (299)
T ss_pred CCCCHHHHHHHHHHh---CCC--CCCCEEEEECCC------------------ccchHHHHHHHHHCCCEEEEeCCCC
Confidence 566888888777654 222 488888876543 3458999999999999999999775
No 453
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=41.56 E-value=63 Score=29.39 Aligned_cols=30 Identities=13% Similarity=-0.036 Sum_probs=25.3
Q ss_pred CccchhHHHHHHHHHHCCCEEEEEeecCCC
Q 027330 68 FSSGHRGAASTEHLIKMGYAVIFLYRRGTC 97 (225)
Q Consensus 68 fSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s~ 97 (225)
++-.-.|..+++++.++|+.|..|.|.+|.
T Consensus 96 P~I~dpg~~Lv~~~~~~gi~v~vIPGiSA~ 125 (287)
T PRK14994 96 PLINDPGYHLVRTCREAGIRVVPLPGPCAA 125 (287)
T ss_pred CceeCCHHHHHHHHHHCCCCEEEeCCHHHH
Confidence 444556899999999999999999999864
No 454
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=41.39 E-value=33 Score=28.67 Aligned_cols=53 Identities=15% Similarity=0.084 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchh-HHHHHHHHHHCCCEEEEEeecC
Q 027330 19 LNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHR-GAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 19 ~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~-Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
|-....+++.++... . .+.|++|+|... |.| |..+|.+|.++|+.|++++|..
T Consensus 25 p~~~~a~v~l~~~~~---~--~l~gk~vlViG~-------------------G~~~G~~~a~~L~~~g~~V~v~~r~~ 78 (168)
T cd01080 25 PCTPAGILELLKRYG---I--DLAGKKVVVVGR-------------------SNIVGKPLAALLLNRNATVTVCHSKT 78 (168)
T ss_pred CChHHHHHHHHHHcC---C--CCCCCEEEEECC-------------------cHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 335555555555443 1 258888888764 455 7889999999999999999763
No 455
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=41.38 E-value=57 Score=27.37 Aligned_cols=68 Identities=16% Similarity=0.181 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHhhCCCCCCCCceEEEecCce-ee------ecCCCCeeEEecCccchhHHHH----HHHHHHCCCEEE
Q 027330 21 DRAAISQKLKEFIALNSSESGTRRVACVTSGGT-TV------PLEQRCVRYIDNFSSGHRGAAS----TEHLIKMGYAVI 89 (225)
Q Consensus 21 ~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT-~e------pID~~~VRfI~NfSSG~~Ga~i----Ae~fl~~G~~Vi 89 (225)
++..+.+.+.+.+. ..-++++-+|+ .. +++ .+-||++..+-|.||.++ .-.+...+..|+
T Consensus 5 ~~~~~~~~l~~~l~--------~~~ivv~d~G~~~~~~~~~~~~~-~~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv 75 (196)
T cd02013 5 HPRQVLRELEKAMP--------EDAIVSTDIGNICSVANSYLRFE-KPRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVV 75 (196)
T ss_pred CHHHHHHHHHHHCC--------CCEEEEECCcHHHHHHHHhcCcC-CCCeEEcCCCCcccccHHHHHHHHHHhCCCCcEE
Confidence 45666666666552 22455554444 22 443 377899877789898554 344445577899
Q ss_pred EEeecCCC
Q 027330 90 FLYRRGTC 97 (225)
Q Consensus 90 ~l~r~~s~ 97 (225)
.+.|.++.
T Consensus 76 ~i~GDG~f 83 (196)
T cd02013 76 AIAGDGAW 83 (196)
T ss_pred EEEcchHH
Confidence 99999985
No 456
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=41.19 E-value=28 Score=33.90 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=23.0
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.|.||..+|..++++|+.|+..-|..
T Consensus 9 LG~MG~~lA~nL~~~G~~V~v~dr~~ 34 (470)
T PTZ00142 9 LAVMGQNLALNIASRGFKISVYNRTY 34 (470)
T ss_pred EhHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 69999999999999999998876643
No 457
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=41.14 E-value=54 Score=22.89 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=23.0
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
.|--|.+.|-++.++|++|+++-+...
T Consensus 4 aG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 4 AGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp -SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred eCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 577899999999999999999997654
No 458
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=40.94 E-value=29 Score=31.71 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=23.9
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
.|.||..+|.-++++||.|+..-|...
T Consensus 8 LG~MG~pmA~~L~~aG~~v~v~~r~~~ 34 (286)
T COG2084 8 LGIMGSPMAANLLKAGHEVTVYNRTPE 34 (286)
T ss_pred CchhhHHHHHHHHHCCCEEEEEeCChh
Confidence 699999999999999999988876643
No 459
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=40.93 E-value=40 Score=31.59 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=27.1
Q ss_pred eEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 63 RYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 63 RfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+.|+ .|||..|.++|-++...|+.++++...
T Consensus 113 ~vV~-aSsGN~G~alA~~a~~~G~~~~ivvp~ 143 (368)
T PLN02556 113 TLIE-PTSGNMGISLAFMAAMKGYKMILTMPS 143 (368)
T ss_pred EEEE-eCCchHHHHHHHHHHHcCCCEEEEECC
Confidence 4566 899999999999999999999998744
No 460
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.86 E-value=1.2e+02 Score=27.91 Aligned_cols=56 Identities=11% Similarity=-0.051 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 18 ~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
.|-.+..+.+-++.+ +. ...||+|+|-..+ ..-|.-+|..|+++|+.|+..|.++.
T Consensus 140 ~PcTp~avi~lL~~~---~i--~l~Gk~vvViGrS------------------~iVGkPla~lL~~~~aTVt~chs~T~ 195 (294)
T PRK14187 140 IPCTPKGCLYLIKTI---TR--NLSGSDAVVIGRS------------------NIVGKPMACLLLGENCTVTTVHSATR 195 (294)
T ss_pred cCcCHHHHHHHHHHh---CC--CCCCCEEEEECCC------------------ccchHHHHHHHhhCCCEEEEeCCCCC
Confidence 456777777666554 22 2588888876554 34589999999999999999998763
No 461
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.83 E-value=2.1e+02 Score=26.23 Aligned_cols=55 Identities=16% Similarity=0.078 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 18 ~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.|-.+..+.+-++.+ +.+ ..||+|+|-..+. .-|.-+|..++++|+.|+..|.++
T Consensus 137 ~PcTp~avi~ll~~~---~i~--l~Gk~vvViGrS~------------------iVGkPla~lL~~~~AtVtichs~T 191 (282)
T PRK14182 137 RPCTPAGVMRMLDEA---RVD--PKGKRALVVGRSN------------------IVGKPMAMMLLERHATVTIAHSRT 191 (282)
T ss_pred CCCCHHHHHHHHHHh---CCC--CCCCEEEEECCCC------------------cchHHHHHHHHHCCCEEEEeCCCC
Confidence 566888888777665 222 4888888876554 348899999999999999999764
No 462
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=40.79 E-value=35 Score=30.61 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=25.4
Q ss_pred CccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 68 FSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 68 fSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.|||..|.++|-++...|+.++.+....
T Consensus 65 aSsGN~g~alA~~a~~~G~~~~i~~p~~ 92 (290)
T TIGR01138 65 ATSGNTGIALAMIAALKGYRMKLLMPDN 92 (290)
T ss_pred ECCChHHHHHHHHHHHcCCeEEEEECCC
Confidence 7999999999999999999999988554
No 463
>PRK08309 short chain dehydrogenase; Provisional
Probab=40.71 E-value=44 Score=27.89 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHCCCEEEEEeec
Q 027330 73 RGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 73 ~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+|.++++.|+++||.|+++.|.
T Consensus 11 ~gg~la~~L~~~G~~V~v~~R~ 32 (177)
T PRK08309 11 MLKRVSLWLCEKGFHVSVIARR 32 (177)
T ss_pred HHHHHHHHHHHCcCEEEEEECC
Confidence 4556999999999999998765
No 464
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=40.63 E-value=36 Score=30.73 Aligned_cols=41 Identities=24% Similarity=0.225 Sum_probs=26.7
Q ss_pred CceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 43 ~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
+++|+||||---|==- .+| |.++-+++++|..|.+|--..-
T Consensus 2 ~~iIVvTSGKGGVGKT---------Ttt----Anig~aLA~~GkKv~liD~DiG 42 (272)
T COG2894 2 ARIIVVTSGKGGVGKT---------TTT----ANIGTALAQLGKKVVLIDFDIG 42 (272)
T ss_pred ceEEEEecCCCCcCcc---------chh----HHHHHHHHHcCCeEEEEecCcC
Confidence 5789999985433211 233 5555566679999999985543
No 465
>PRK05638 threonine synthase; Validated
Probab=40.61 E-value=32 Score=32.81 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=25.4
Q ss_pred CccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 68 FSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 68 fSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.|||..|+++|-++...|+.|+.+....
T Consensus 118 aSsGN~g~alA~~aa~~G~~~~i~vp~~ 145 (442)
T PRK05638 118 ASDGNAAASVAAYSARAGKEAFVVVPRK 145 (442)
T ss_pred eCCChHHHHHHHHHHHcCCCEEEEEeCC
Confidence 7999999999999999999998888554
No 466
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=40.29 E-value=32 Score=31.52 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=22.7
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.|-.|.++|.++.++|+.|++|-+.
T Consensus 8 ~Gi~Gls~A~~l~~~g~~V~vle~~ 32 (416)
T PRK00711 8 SGVIGVTSAWYLAQAGHEVTVIDRQ 32 (416)
T ss_pred CcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4778999999999999999999875
No 467
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=40.26 E-value=45 Score=32.58 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=31.0
Q ss_pred CceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHH-CCCEEEEEeec
Q 027330 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIK-MGYAVIFLYRR 94 (225)
Q Consensus 43 ~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~-~G~~Vi~l~r~ 94 (225)
.+-|+|.+=.-.-|+. | ..+..+|.++||||.. .|++|.++.-.
T Consensus 201 ~rtvvV~atsd~p~~~----R----~~a~~~a~tiAEyfrd~~G~~VLll~Ds 245 (461)
T TIGR01039 201 DKTALVYGQMNEPPGA----R----MRVALTGLTMAEYFRDEQGQDVLLFIDN 245 (461)
T ss_pred ceeEEEEECCCCCHHH----H----HHHHHHHHHHHHHHHHhcCCeeEEEecc
Confidence 4556665544433444 2 3457789999999998 89999999854
No 468
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=40.13 E-value=63 Score=31.56 Aligned_cols=53 Identities=15% Similarity=0.117 Sum_probs=36.0
Q ss_pred eEEEecCceee-------ecCCCCeeEEecCccchhHHHHHH----HHHHCCCEEEEEeecCCCC
Q 027330 45 VACVTSGGTTV-------PLEQRCVRYIDNFSSGHRGAASTE----HLIKMGYAVIFLYRRGTCE 98 (225)
Q Consensus 45 ~vlITSGgT~e-------pID~~~VRfI~NfSSG~~Ga~iAe----~fl~~G~~Vi~l~r~~s~~ 98 (225)
.++++-+|+.. ++. .+-+|+++.+-|.||.++.- .+...+..|+.|.|.++.+
T Consensus 389 ~ii~~d~g~~~~~~~~~~~~~-~p~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i~GDG~f~ 452 (572)
T PRK06456 389 AIVTTGVGQHQMWAEVFWEVL-EPRTFLTSSGMGTMGFGLPAAMGAKLARPDKVVVDLDGDGSFL 452 (572)
T ss_pred EEEEECCcHHHHHHHHhcCcC-CCCcEEcCCCcccccchhHHHHHHHHhCCCCeEEEEEccchHh
Confidence 45555555543 222 36799999888999766533 3444577899999999853
No 469
>PLN02550 threonine dehydratase
Probab=40.11 E-value=2.3e+02 Score=28.58 Aligned_cols=28 Identities=11% Similarity=0.160 Sum_probs=25.2
Q ss_pred CccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 68 FSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 68 fSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.|+|..|.++|-++...|+.++.+...+
T Consensus 163 aSaGNhAqgvA~aA~~lGika~IvmP~~ 190 (591)
T PLN02550 163 SSAGNHAQGVALSAQRLGCDAVIAMPVT 190 (591)
T ss_pred ECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 6999999999999999999999988443
No 470
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=39.96 E-value=30 Score=31.15 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.5
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.|-.|+++|-++.++|++|++|-+.
T Consensus 8 aGi~G~s~A~~La~~g~~V~l~e~~ 32 (380)
T TIGR01377 8 AGIMGCFAAYHLAKHGKKTLLLEQF 32 (380)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEecc
Confidence 4788999999999999999999864
No 471
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=39.70 E-value=31 Score=32.36 Aligned_cols=26 Identities=19% Similarity=0.102 Sum_probs=23.4
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
-.|.||..+|..++++|+.|+.+-+.
T Consensus 7 GlG~~G~~lA~~La~~G~~V~~~d~~ 32 (411)
T TIGR03026 7 GLGYVGLPLAALLADLGHEVTGVDID 32 (411)
T ss_pred CCCchhHHHHHHHHhcCCeEEEEECC
Confidence 37999999999999999999988764
No 472
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=39.57 E-value=37 Score=28.31 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecC
Q 027330 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLE 58 (225)
Q Consensus 18 ~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID 58 (225)
.|.+.++|.+.+.+.+.+ --++||+|||..-=|
T Consensus 41 v~Dd~~~I~~~l~~~~~~--------~dlVIttGG~G~t~~ 73 (170)
T cd00885 41 VGDDEDRIAEALRRASER--------ADLVITTGGLGPTHD 73 (170)
T ss_pred eCCCHHHHHHHHHHHHhC--------CCEEEECCCCCCCCC
Confidence 567888898888887632 257788899876655
No 473
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=39.30 E-value=35 Score=30.59 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=21.9
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.|.||..+|+.++++|+.|++.-+.
T Consensus 8 lG~mG~~mA~~L~~~g~~v~v~dr~ 32 (299)
T PRK12490 8 LGKMGGNMAERLREDGHEVVGYDVN 32 (299)
T ss_pred ccHHHHHHHHHHHhCCCEEEEEECC
Confidence 7999999999999999999865543
No 474
>PRK08617 acetolactate synthase; Reviewed
Probab=39.16 E-value=73 Score=30.99 Aligned_cols=38 Identities=16% Similarity=0.057 Sum_probs=31.7
Q ss_pred CeeEEecCccchhH----HHHHHHHHHCCCEEEEEeecCCCC
Q 027330 61 CVRYIDNFSSGHRG----AASTEHLIKMGYAVIFLYRRGTCE 98 (225)
Q Consensus 61 ~VRfI~NfSSG~~G----a~iAe~fl~~G~~Vi~l~r~~s~~ 98 (225)
+-+++...+.|.|| ++|.-.+...+-.|+.|.|.++.+
T Consensus 404 p~~~~~~~~~g~mG~~lpaaiGa~la~p~~~vv~i~GDGsf~ 445 (552)
T PRK08617 404 PRHLLFSNGMQTLGVALPWAIAAALVRPGKKVVSVSGDGGFL 445 (552)
T ss_pred CCeEEecCccccccccccHHHhhHhhcCCCcEEEEEechHHh
Confidence 67888888889999 777777776788999999999853
No 475
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=38.97 E-value=1.1e+02 Score=26.71 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHCCCEEEEEeecC
Q 027330 73 RGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 73 ~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.+.++.+.+.++|+.|++|-|..
T Consensus 39 iA~ale~~L~~~G~~~y~LDGDn 61 (197)
T COG0529 39 IANALEEKLFAKGYHVYLLDGDN 61 (197)
T ss_pred HHHHHHHHHHHcCCeEEEecChh
Confidence 35677888889999999999874
No 476
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=38.83 E-value=45 Score=32.49 Aligned_cols=45 Identities=20% Similarity=0.229 Sum_probs=31.0
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
-.+.|+|-+-.-.-|+. - .-....+.++||||...|++|.++.-.
T Consensus 222 l~rsvvv~atsd~~p~~--r------~~a~~~a~aiAEyfrd~G~~VLl~~Ds 266 (451)
T PRK05688 222 LKRSVVVASPADDAPLM--R------LRAAMYCTRIAEYFRDKGKNVLLLMDS 266 (451)
T ss_pred ccEEEEEEECCCCCHHH--H------HHHHHHHHHHHHHHHHCCCCEEEEecc
Confidence 34556665544444444 1 224667889999999999999999854
No 477
>PRK06820 type III secretion system ATPase; Validated
Probab=38.58 E-value=51 Score=31.97 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=31.8
Q ss_pred CCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 42 ~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
..+-++|.+-.-.-|+. |+ -+...|.++||||...|++|.++.-.
T Consensus 217 ~~rtvvv~atsd~p~~~----r~----~a~~~a~tiAEyfrd~G~~VLl~~Ds 261 (440)
T PRK06820 217 RARTVVVVATSDRPALE----RL----KGLSTATTIAEYFRDRGKKVLLMADS 261 (440)
T ss_pred ceeEEEEEeCCCCCHHH----HH----HHHHHHHHHHHHHHHcCCCEEEEccc
Confidence 34566666655444544 22 34558899999999999999998844
No 478
>PRK06851 hypothetical protein; Provisional
Probab=38.41 E-value=1.6e+02 Score=27.81 Aligned_cols=87 Identities=10% Similarity=0.124 Sum_probs=50.9
Q ss_pred hhhHHhhhccCCCCCCHHHHHHHHHHHHhhCCCCC-CCCceEE-----EecCcee-------eecCCCCeeEEec-Cccc
Q 027330 6 NSEIESFFDSAPPLNDRAAISQKLKEFIALNSSES-GTRRVAC-----VTSGGTT-------VPLEQRCVRYIDN-FSSG 71 (225)
Q Consensus 6 ~~~~~~ff~~~~~~~~~~~i~~~l~~f~~~~~~~~-~~~~~vl-----ITSGgT~-------epID~~~VRfI~N-fSSG 71 (225)
-++|+.++.+++-.+-.+++.+.+.+-+-.+.... ..|+.-- +|+.|-. ++++ .+-+|+= .-+|
T Consensus 149 hdd~e~~y~~~md~~k~~~~~~~l~~~l~~~~~~~~~~g~~rh~F~ga~Tp~G~~s~~~~l~~~~~--~~~~i~G~pG~G 226 (367)
T PRK06851 149 HDEWEKIYIENMDFAKANELTDELIQELFKGAPGKISKGKVRHLFLGAITPKGAVDFVPSLTEGVK--NRYFLKGRPGTG 226 (367)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhccCcccccCCceeeeeccccCCCcHHhhHHhHhcccc--eEEEEeCCCCCc
Confidence 35788999888877777777776666433222110 0233222 3333332 2333 3333332 3566
Q ss_pred h--hHHHHHHHHHHCCCEEEEEeec
Q 027330 72 H--RGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 72 ~--~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+ +...+++++.++|+.|.+.|-+
T Consensus 227 Kstl~~~i~~~a~~~G~~v~~~hC~ 251 (367)
T PRK06851 227 KSTMLKKIAKAAEERGFDVEVYHCG 251 (367)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4 3456799999999999999944
No 479
>PRK12483 threonine dehydratase; Reviewed
Probab=38.37 E-value=2.4e+02 Score=27.89 Aligned_cols=28 Identities=14% Similarity=0.279 Sum_probs=25.1
Q ss_pred CccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 68 FSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 68 fSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.|+|..|.++|-++...|..++.+...+
T Consensus 91 aSaGNha~gvA~aA~~lGi~~~IvmP~~ 118 (521)
T PRK12483 91 ASAGNHAQGVALAAARLGVKAVIVMPRT 118 (521)
T ss_pred ECCCHHHHHHHHHHHHhCCCEEEEECCC
Confidence 6999999999999999999999888544
No 480
>PRK09099 type III secretion system ATPase; Provisional
Probab=38.12 E-value=57 Score=31.65 Aligned_cols=44 Identities=16% Similarity=0.180 Sum_probs=30.8
Q ss_pred CceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 43 ~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.+.++|-+-.-.-|++ - ..+...|.++||||...|++|.++.-.
T Consensus 218 ~rtvvv~~tsd~p~~~--r------~~a~~~a~tiAEyfrd~G~~VLl~~Ds 261 (441)
T PRK09099 218 ARSVVVCATSDRSSIE--R------AKAAYVATAIAEYFRDRGLRVLLMMDS 261 (441)
T ss_pred ceEEEEEECCCCCHHH--H------HHHHHHHHHHHHHHHHcCCCEEEeccc
Confidence 3455555544444455 2 235778999999999999999999743
No 481
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=37.97 E-value=1.4e+02 Score=28.67 Aligned_cols=28 Identities=29% Similarity=0.304 Sum_probs=22.4
Q ss_pred ccchhHHHHHHHHHH-CCCEEEEEeecCC
Q 027330 69 SSGHRGAASTEHLIK-MGYAVIFLYRRGT 96 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~-~G~~Vi~l~r~~s 96 (225)
.||-+|+.+..+++. +-+.|+.+-|..+
T Consensus 8 ATGFLG~yLl~eLL~~~~~kv~cLVRA~s 36 (382)
T COG3320 8 ATGFLGAYLLLELLDRSDAKVICLVRAQS 36 (382)
T ss_pred CchHhHHHHHHHHHhcCCCcEEEEEecCC
Confidence 589999888888776 5668888887766
No 482
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=37.97 E-value=36 Score=31.27 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.6
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.|-.|.++|.++.++|++|++|-+.
T Consensus 9 aG~~G~~~A~~La~~g~~V~vle~~ 33 (410)
T PRK12409 9 AGITGVTTAYALAQRGYQVTVFDRH 33 (410)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4778999999999999999999765
No 483
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=37.93 E-value=36 Score=31.50 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecC
Q 027330 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLE 58 (225)
Q Consensus 18 ~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID 58 (225)
.|.+.+.|.+.+++++.. +-.++||+|||..-=+
T Consensus 197 VpDD~~~I~~al~~a~~~-------~~DlIITTGGtg~g~~ 230 (312)
T PRK03604 197 IPDEPAEIAAAVAAWIAE-------GYALIITTGGTGLGPR 230 (312)
T ss_pred cCCCHHHHHHHHHHhhhC-------CCCEEEECCCCCCCCC
Confidence 578899999888887532 2258888899887555
No 484
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=37.93 E-value=38 Score=30.49 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=22.5
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.|-.|.++|-+++++|++|++|-+.
T Consensus 8 ~Gi~G~s~A~~L~~~G~~V~vle~~ 32 (365)
T TIGR03364 8 AGILGLAHAYAAARRGLSVTVIERS 32 (365)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5778999999999999999999764
No 485
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=37.73 E-value=38 Score=30.26 Aligned_cols=33 Identities=18% Similarity=0.161 Sum_probs=27.3
Q ss_pred cCccchhHHHHHHHHHHCCCEEEEEeecCCCCC
Q 027330 67 NFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEP 99 (225)
Q Consensus 67 NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s~~P 99 (225)
=--.|-.|..+|+++.++|..|+++.......|
T Consensus 141 vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~ 173 (415)
T COG0446 141 VVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGG 173 (415)
T ss_pred EECCcHHHHHHHHHHHHcCCeEEEEEcccccch
Confidence 345788999999999999999999997665444
No 486
>PRK05398 formyl-coenzyme A transferase; Provisional
Probab=37.71 E-value=40 Score=32.00 Aligned_cols=36 Identities=33% Similarity=0.503 Sum_probs=33.9
Q ss_pred ecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 56 PLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 56 pID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
||+ .||.|| +|+...|...+..|...||+||=|-.+
T Consensus 4 pL~--GirVld-ls~~~aGP~a~~lLAdlGA~VIKVE~p 39 (416)
T PRK05398 4 PLE--GIKVLD-FTHVQSGPSCTQLLAWFGADVIKVERP 39 (416)
T ss_pred CCC--CCEEEE-eccHHHHHHHHHHHHHcCCCEEEecCC
Confidence 799 999999 999999999999999999999999866
No 487
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=37.65 E-value=1.3e+02 Score=28.58 Aligned_cols=56 Identities=14% Similarity=0.061 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 18 ~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
.|-.+..+.+-++.+ +.+ ..||+|+|-..+. .-|.-+|..|+++|+.|+..|.++.
T Consensus 211 ~PCTp~avielL~~y---~i~--l~GK~vvVIGRS~------------------iVGkPLa~LL~~~~ATVTicHs~T~ 266 (364)
T PLN02616 211 VPCTPKGCIELLHRY---NVE--IKGKRAVVIGRSN------------------IVGMPAALLLQREDATVSIVHSRTK 266 (364)
T ss_pred CCCCHHHHHHHHHHh---CCC--CCCCEEEEECCCc------------------cccHHHHHHHHHCCCeEEEeCCCCC
Confidence 566788888777654 222 4898888865443 4488899999999999999997763
No 488
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.63 E-value=1.6e+02 Score=26.98 Aligned_cols=56 Identities=13% Similarity=0.052 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 18 ~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
.|-.+..+.+-++.+ +. ...||+|+|-..+. .-|.-+|..++.+|+.|+..|+++.
T Consensus 138 ~PcTp~aii~lL~~~---~i--~l~Gk~vvViGrs~------------------iVGkPla~lL~~~~atVt~~hs~t~ 193 (285)
T PRK14189 138 RPCTPYGVMKMLESI---GI--PLRGAHAVVIGRSN------------------IVGKPMAMLLLQAGATVTICHSKTR 193 (285)
T ss_pred cCCCHHHHHHHHHHc---CC--CCCCCEEEEECCCC------------------ccHHHHHHHHHHCCCEEEEecCCCC
Confidence 455777777666554 22 24788877765443 3488999999999999999997653
No 489
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=37.59 E-value=93 Score=25.65 Aligned_cols=68 Identities=13% Similarity=0.177 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhhCCCCCCCCceEEEecCceeee-----cC-CCCeeEEecCccchhHHHHHH----HHHHCCCEEEEEe
Q 027330 23 AAISQKLKEFIALNSSESGTRRVACVTSGGTTVP-----LE-QRCVRYIDNFSSGHRGAASTE----HLIKMGYAVIFLY 92 (225)
Q Consensus 23 ~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~ep-----ID-~~~VRfI~NfSSG~~Ga~iAe----~fl~~G~~Vi~l~ 92 (225)
..+.+.+.+.+. ...++|+-+|+... ++ ..+-+|+.+...|.||.++.- .+...+..|+.+.
T Consensus 4 ~~~~~~l~~~l~--------~~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~ 75 (186)
T cd02015 4 QEVIKELSELTP--------GDAIVTTDVGQHQMWAAQYYRFKKPRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICID 75 (186)
T ss_pred HHHHHHHHhhCC--------CCeEEEeCCcHHHHHHHHhcccCCCCeEEeCCCccchhchHHHHHHHHHhCCCCeEEEEE
Confidence 445555555442 22566666565321 11 246789988778899966543 3334567899999
Q ss_pred ecCCCC
Q 027330 93 RRGTCE 98 (225)
Q Consensus 93 r~~s~~ 98 (225)
|.++..
T Consensus 76 GDG~f~ 81 (186)
T cd02015 76 GDGSFQ 81 (186)
T ss_pred cccHHh
Confidence 999854
No 490
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=37.58 E-value=35 Score=31.93 Aligned_cols=36 Identities=36% Similarity=0.400 Sum_probs=30.8
Q ss_pred CceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecCC
Q 027330 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (225)
Q Consensus 43 ~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~s 96 (225)
+++|+||+| |+| +|.++|.++...|++|+.+.|++.
T Consensus 33 ~~hi~itgg-----------------S~g-lgl~la~e~~~~ga~Vti~ar~~~ 68 (331)
T KOG1210|consen 33 RRHILITGG-----------------SSG-LGLALALECKREGADVTITARSGK 68 (331)
T ss_pred cceEEEecC-----------------cch-hhHHHHHHHHHccCceEEEeccHH
Confidence 468999987 444 589999999999999999999875
No 491
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=37.49 E-value=31 Score=33.84 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=22.9
Q ss_pred cchhHHHHHHHHHHCCCEEEEEeec
Q 027330 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 70 SG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.|.||..+|.-++++|+.|+.--|.
T Consensus 14 LG~MG~~mA~nL~~~G~~V~V~NRt 38 (493)
T PLN02350 14 LAVMGQNLALNIAEKGFPISVYNRT 38 (493)
T ss_pred eHHHHHHHHHHHHhCCCeEEEECCC
Confidence 7999999999999999999987764
No 492
>PRK08329 threonine synthase; Validated
Probab=37.33 E-value=39 Score=31.13 Aligned_cols=30 Identities=17% Similarity=0.035 Sum_probs=25.7
Q ss_pred EecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 65 IDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 65 I~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
|-=.|||..|.++|-++...|+.++++...
T Consensus 107 vv~aSsGN~g~alA~~aa~~G~~~~v~vp~ 136 (347)
T PRK08329 107 VVIDSSGNAALSLALYSLSEGIKVHVFVSY 136 (347)
T ss_pred EEEECCCcHHHHHHHHHHHcCCcEEEEECC
Confidence 444799999999999999999998888744
No 493
>PRK11761 cysM cysteine synthase B; Provisional
Probab=37.21 E-value=40 Score=30.36 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=25.3
Q ss_pred CccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 68 FSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 68 fSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
-|||..|.++|-++...|+.++.+..+.
T Consensus 69 aSsGN~g~alA~~a~~~G~~~~i~~p~~ 96 (296)
T PRK11761 69 ATSGNTGIALAMIAAIKGYRMKLIMPEN 96 (296)
T ss_pred eCCChHHHHHHHHHHHcCCCEEEEECCC
Confidence 6999999999999999999999988544
No 494
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=36.96 E-value=3.7e+02 Score=25.42 Aligned_cols=30 Identities=10% Similarity=-0.004 Sum_probs=25.8
Q ss_pred ecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 66 DNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 66 ~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
--.|+|..|.++|-++...|..++.+....
T Consensus 68 v~aSsGN~g~a~A~~a~~~G~~~~iv~p~~ 97 (409)
T TIGR02079 68 VCASAGNHAQGFAYACRHLGVHGTVFMPAT 97 (409)
T ss_pred EEECccHHHHHHHHHHHHcCCCEEEEECCC
Confidence 336899999999999999999998887544
No 495
>PRK08655 prephenate dehydrogenase; Provisional
Probab=36.83 E-value=39 Score=32.31 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=22.9
Q ss_pred ccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 69 SSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
.+|.||.++|..|..+|+.|+.+.+.
T Consensus 8 G~G~mG~slA~~L~~~G~~V~v~~r~ 33 (437)
T PRK08655 8 GTGGLGKWFARFLKEKGFEVIVTGRD 33 (437)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 36999999999999999999888754
No 496
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.83 E-value=2.5e+02 Score=25.67 Aligned_cols=55 Identities=16% Similarity=0.140 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 18 ~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
.|-.+..+.+-++.+ +.+ .+||+|+|-..+ +.-|.-+|..|+.+|+.|+..|.++
T Consensus 138 ~PcTp~av~~lL~~~---~i~--l~Gk~vvViGrS------------------~iVG~Pla~lL~~~~atVt~chs~t 192 (284)
T PRK14190 138 LPCTPHGILELLKEY---NID--ISGKHVVVVGRS------------------NIVGKPVGQLLLNENATVTYCHSKT 192 (284)
T ss_pred CCCCHHHHHHHHHHc---CCC--CCCCEEEEECCC------------------CccHHHHHHHHHHCCCEEEEEeCCc
Confidence 566888888777664 222 488888876543 4458999999999999999999654
No 497
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=36.78 E-value=43 Score=32.39 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=30.8
Q ss_pred ceEEEecCceeeecCCCCeeEEecCccchhHHHHHHHHHHCCCEEEEEeec
Q 027330 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 44 ~~vlITSGgT~epID~~~VRfI~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~ 94 (225)
+-++|.+=+..-|++ -.-+..+|.++||+|...|++|.++.-.
T Consensus 219 ~tvvv~~~~d~~p~~--------r~~~~~~a~t~AE~frd~G~~Vll~~Ds 261 (440)
T TIGR01026 219 RSVVVVATSDQSPLL--------RLKGAYVATAIAEYFRDQGKDVLLLMDS 261 (440)
T ss_pred eEEEEEECCCCCHHH--------HHHHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 445555544444555 2345778999999999999999999844
No 498
>PRK08197 threonine synthase; Validated
Probab=36.76 E-value=40 Score=31.59 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=26.6
Q ss_pred EecCccchhHHHHHHHHHHCCCEEEEEeecC
Q 027330 65 IDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (225)
Q Consensus 65 I~NfSSG~~Ga~iAe~fl~~G~~Vi~l~r~~ 95 (225)
|-=.|||..|.++|-+....|..|+++...+
T Consensus 130 vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~ 160 (394)
T PRK08197 130 LAMPTNGNAGAAWAAYAARAGIRATIFMPAD 160 (394)
T ss_pred EEEeCCcHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 3347999999999999999999998888554
No 499
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=36.67 E-value=37 Score=31.87 Aligned_cols=34 Identities=26% Similarity=0.230 Sum_probs=30.6
Q ss_pred CeeEEecCccchhHH-----HHHHHHHHCCCEEEEEeec
Q 027330 61 CVRYIDNFSSGHRGA-----ASTEHLIKMGYAVIFLYRR 94 (225)
Q Consensus 61 ~VRfI~NfSSG~~Ga-----~iAe~fl~~G~~Vi~l~r~ 94 (225)
||=+|.|+|-|..|. .+|+.+.++|+.|-+++|-
T Consensus 48 PVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSRG 86 (336)
T COG1663 48 PVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSRG 86 (336)
T ss_pred CEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEEEecC
Confidence 899999999888884 6899999999999999975
No 500
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=36.57 E-value=80 Score=29.14 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCCceEEEecCceeeecC
Q 027330 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLE 58 (225)
Q Consensus 18 ~~~~~~~i~~~l~~f~~~~~~~~~~~~~vlITSGgT~epID 58 (225)
.|.+.++|.+.+++++. .|--++||+|||.+-=+
T Consensus 201 v~Dd~~~I~~ai~~~~~-------~g~DlIItTGGtsvg~~ 234 (312)
T cd03522 201 VPHDEAAIAAAIAEALE-------AGAELLILTGGASVDPD 234 (312)
T ss_pred cCCCHHHHHHHHHHHhc-------CCCCEEEEeCCcccCCc
Confidence 57789999998888753 23367888888887555
Done!