BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027331
(225 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TMP|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
pdb|3TMP|C Chain C, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
pdb|3TMP|E Chain E, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
pdb|3TMP|G Chain G, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
Length = 184
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 4/126 (3%)
Query: 93 DGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWG 152
DG C FRA++DQ+Y + H+ VRK + L + YV + Y K G
Sbjct: 54 DGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHG 113
Query: 153 DHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQ----HQAPKRELWLSFWSEVHYNSLYD 208
+H+ +QA A+ + + + T +E + HQ + +S+ +HYNS+ +
Sbjct: 114 NHIEMQAMAEMYNRPVEVYQYSTGTSAVEPINTFHGIHQNEDEPIRVSYHRNIHYNSVVN 173
Query: 209 IRDAPV 214
A +
Sbjct: 174 PNKATI 179
>pdb|3TMO|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba
Length = 184
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 4/126 (3%)
Query: 93 DGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWG 152
DG C FRA++DQ+Y + H+ VRK L + YV + Y K G
Sbjct: 54 DGACLFRAVADQVYGDQDXHEVVRKHCXDYLXKNADYFSNYVTEDFTTYINRKRKNNCHG 113
Query: 153 DHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQ----HQAPKRELWLSFWSEVHYNSLYD 208
+H+ QA A+ + + + T +E + HQ + +S+ +HYNS+ +
Sbjct: 114 NHIEXQAXAEXYNRPVEVYQYSTGTSAVEPINTFHGIHQNEDEPIRVSYHRNIHYNSVVN 173
Query: 209 IRDAPV 214
A +
Sbjct: 174 PNKATI 179
>pdb|3PFY|A Chain A, The Catalytic Domain Of Human Otud5
Length = 185
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
Query: 93 DGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWG 152
DG C FRA++DQ+Y + H+ VRK L + YV + Y K G
Sbjct: 67 DGACLFRAVADQVYGDQDXHEVVRKHCXDYLXKNADYFSNYVTEDFTTYINRKRKNNCHG 126
Query: 153 DHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSL 206
+H+ QA A+ + + + + HQ + +S+ +HYNS+
Sbjct: 127 NHIEXQAXAEXYNRPVEVY-QYSTEPINTFHGIHQNEDEPIRVSYHRNIHYNSV 179
>pdb|3PHW|A Chain A, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|C Chain C, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|E Chain E, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|G Chain G, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHX|A Chain A, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Isg15
Length = 185
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 11/102 (10%)
Query: 79 RLNVYGLYE-VKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKD--CRSMYEG--- 132
R N+ +E V+ GDGNC + ++++ + H + +K+L + R Y+
Sbjct: 24 RFNISDYFEIVRQPGDGNCFYHSIAELTMPNKTDHSY---HYIKRLTESAARKYYQEEPE 80
Query: 133 --YVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLT 172
V + + Y K M EWG + A + I + T
Sbjct: 81 ARLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWT 122
>pdb|3ZNH|A Chain A, Crimean Congo Hemorrhagic Fever Virus Otu Domain In
Complex With Ubiquitin-propargyl
Length = 183
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 11/102 (10%)
Query: 79 RLNVYGLYE-VKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKD--CRSMYEG--- 132
R N+ +E V+ GDGNC + ++++ + H + +K+L + R Y+
Sbjct: 22 RFNISDYFEIVRQPGDGNCFYHSIAELTMPNKTDHSY---HYIKRLTESAARKYYQEEPE 78
Query: 133 --YVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLT 172
V + + Y K M EWG + A + I + T
Sbjct: 79 ARLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWT 120
>pdb|3PSE|A Chain A, Structure Of A Viral Otu Domain Protease Bound To
Interferon- Stimulated Gene 15 (Isg15)
Length = 171
Score = 30.0 bits (66), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 11/102 (10%)
Query: 79 RLNVYGLYE-VKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKD--CRSMYEG--- 132
R N+ +E V+ GDGNC + ++++ + H + +K+L + R Y+
Sbjct: 24 RFNISDYFEIVRQPGDGNCFYHSIAELTMPNKTDHSY---HYIKRLTESAARKYYQEEPE 80
Query: 133 --YVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLT 172
V + + Y K M EWG + A + I + T
Sbjct: 81 ARLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWT 122
>pdb|3PRP|A Chain A, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
pdb|3PRP|C Chain C, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
Length = 178
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 11/102 (10%)
Query: 79 RLNVYGLYE-VKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKD--CRSMYEG--- 132
R N+ +E V+ GDGNC + ++++ + H + +K+L + R Y+
Sbjct: 22 RFNISDYFEIVRQPGDGNCFYHSIAELTMPNKTDHSY---HYIKRLTESAARKYYQEEPE 78
Query: 133 --YVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLT 172
V + + Y K M EWG + A + I + T
Sbjct: 79 ARLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWT 120
>pdb|2VFJ|A Chain A, Structure Of The A20 Ovarian Tumour (Otu) Domain
pdb|2VFJ|B Chain B, Structure Of The A20 Ovarian Tumour (Otu) Domain
pdb|2VFJ|C Chain C, Structure Of The A20 Ovarian Tumour (Otu) Domain
pdb|2VFJ|D Chain D, Structure Of The A20 Ovarian Tumour (Otu) Domain
Length = 366
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 69 ASLDHQRLLQRL-NVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKD 125
A+L+ Q+ L V L +K +GDGNC A S M+ + +RK + LK+
Sbjct: 75 ATLESQKKLNWCREVRKLVALKTNGDGNCLMHATSQYMWGVQDTDLVLRKALFSTLKE 132
>pdb|3DKB|A Chain A, Crystal Structure Of A20, 2.5 Angstrom
pdb|3DKB|B Chain B, Crystal Structure Of A20, 2.5 Angstrom
pdb|3DKB|C Chain C, Crystal Structure Of A20, 2.5 Angstrom
pdb|3DKB|D Chain D, Crystal Structure Of A20, 2.5 Angstrom
pdb|3DKB|E Chain E, Crystal Structure Of A20, 2.5 Angstrom
pdb|3DKB|F Chain F, Crystal Structure Of A20, 2.5 Angstrom
Length = 390
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 69 ASLDHQRLLQRL-NVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKD 125
A+L+ Q+ L V L +K +GDGNC A S M+ + +RK + LK+
Sbjct: 95 ATLESQKKLNWCREVRKLVALKTNGDGNCLMHATSQYMWGVQDTDLVLRKALFSTLKE 152
>pdb|2XHL|B Chain B, Structure Of A Functional Derivative Of Clostridium
Botulinum Neurotoxin Type B
Length = 433
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 50 LAPVPHVPKINSYIPNMSDASLDHQRLLQRLN-----VYGLYEVKVSGDGNCQFRALSDQ 104
L PV + SYI N + L + N +YGL + N QF + +
Sbjct: 221 LIPVVGAFLLESYIDNKNKIIKTIDNALTKRNEKWSDMYGLIVAQWLSTVNTQFYTIKEG 280
Query: 105 MYKSPEYHKHVRKEVVK 121
MYK+ Y +E++K
Sbjct: 281 MYKALNYQAQALEEIIK 297
>pdb|3ZUQ|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type B-Derivative, Lc-B-Gs-Hn-B
Length = 906
Score = 28.1 bits (61), Expect = 4.0, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 50 LAPVPHVPKINSYIPNMSD--ASLDH---QRLLQRLNVYGLYEVKVSGDGNCQFRALSDQ 104
L PV + SYI N + ++D+ +R + ++YGL + N QF + +
Sbjct: 694 LIPVVGAFLLESYIDNKNKIIKTIDNALTKRNEKWSDMYGLIVAQWLSTVNTQFYTIKEG 753
Query: 105 MYKSPEYHKHVRKEVVK 121
MYK+ Y +E++K
Sbjct: 754 MYKALNYQAQALEEIIK 770
>pdb|1EPW|A Chain A, Crystal Structure Of Clostridium Neurotoxin Type B
pdb|1F31|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With A Trisaccharide
pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With Doxorubicin
pdb|1G9A|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With An Inhibitor (Experiment 3)
pdb|1G9B|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With An Inhibitor (Experiment 1)
pdb|1G9C|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With An Inhibitor (Experiment 4)
pdb|1G9D|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With An Inhibitor (Experiment 2)
pdb|1S0B|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 4.0
pdb|1S0C|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 5.0
pdb|1S0D|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 5.5
pdb|1S0E|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 6.0
pdb|1S0F|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 7.0
pdb|1S0G|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B Apo Form
pdb|2NP0|A Chain A, Crystal Structure Of The Botulinum Neurotoxin Type B
Complexed With Synaptotagamin-Ii Ectodomain
Length = 1290
Score = 27.7 bits (60), Expect = 5.0, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 50 LAPVPHVPKINSYIPNMSDASLDHQRLLQRLN-----VYGLYEVKVSGDGNCQFRALSDQ 104
L PV + SYI N + L + N +YGL + N QF + +
Sbjct: 658 LIPVVGAFLLESYIDNKNKIIKTIDNALTKRNEKWSDMYGLIVAQWLSTVNTQFYTIKEG 717
Query: 105 MYKSPEYHKHVRKEVVK 121
MYK+ Y +E++K
Sbjct: 718 MYKALNYQAQALEEIIK 734
>pdb|3PT2|A Chain A, Structure Of A Viral Otu Domain Protease Bound To
Ubiquitin
Length = 187
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 11/102 (10%)
Query: 79 RLNVYGLYE-VKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKD--CRSMYEG--- 132
R N+ +E V+ GDGNC + ++++ + H + +K+L + R Y+
Sbjct: 25 RFNISDYFEIVRQPGDGNCFYHSIAELTXPNKTDHSY---HYIKRLTESAARKYYQEEPE 81
Query: 133 --YVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLT 172
V + + Y K EWG + A + I + T
Sbjct: 82 ARLVGLSLEDYLKRXLSDNEWGSTLEASXLAKEXGITIIIWT 123
>pdb|3PRM|A Chain A, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
pdb|3PRM|C Chain C, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
Length = 178
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 11/102 (10%)
Query: 79 RLNVYGLYE-VKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKD--CRSMYEG--- 132
R N+ +E V+ GDGNC + ++++ + H + +K+L + R Y+
Sbjct: 22 RFNISDYFEIVRQPGDGNCFYHSIAELTXPNKTDHSY---HYIKRLTESAARKYYQEEPE 78
Query: 133 --YVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLT 172
V + + Y K EWG + A + I + T
Sbjct: 79 ARLVGLSLEDYLKRXLSDNEWGSTLEASXLAKEXGITIIIWT 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,698,830
Number of Sequences: 62578
Number of extensions: 262646
Number of successful extensions: 515
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 499
Number of HSP's gapped (non-prelim): 17
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)