Query 027331
Match_columns 225
No_of_seqs 197 out of 1148
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 13:38:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027331.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027331hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfy_A OTU domain-containing p 100.0 1.2E-37 4E-42 260.2 14.2 142 68-210 42-183 (185)
2 3by4_A OTU1, ubiquitin thioest 100.0 1.9E-33 6.5E-38 239.4 12.7 124 81-209 16-140 (212)
3 3phx_A RNA-directed RNA polyme 100.0 2.1E-31 7E-36 222.5 13.2 125 85-213 31-164 (185)
4 3phu_A RNA-directed RNA polyme 100.0 5.4E-31 1.9E-35 224.9 14.0 126 85-214 31-165 (219)
5 1tff_A Ubiquitin thiolesterase 99.9 7.4E-22 2.5E-26 170.1 13.3 95 113-210 133-232 (234)
6 2zfy_A Ubiquitin thioesterase 99.8 3.1E-20 1.1E-24 159.9 14.1 92 114-208 137-234 (234)
7 4dhi_B Ubiquitin thioesterase 99.8 3.1E-19 1.1E-23 157.1 14.3 101 113-215 171-280 (284)
8 4ddg_A Ubiquitin-conjugating e 99.8 2.8E-18 9.6E-23 158.0 12.8 94 112-208 300-399 (399)
9 3dkb_A Tumor necrosis factor, 98.9 1.8E-08 6.3E-13 90.6 13.8 127 85-212 112-286 (390)
10 3zrh_A Ubiquitin thioesterase 98.8 2.8E-08 9.5E-13 90.8 10.5 128 84-212 188-352 (454)
11 4a5u_A RNA replicase polyprote 73.3 5.3 0.00018 31.8 5.1 106 80-209 49-157 (160)
12 2nl9_A Fusion protein consisti 25.1 40 0.0014 26.1 2.5 53 112-164 40-104 (157)
13 4hw4_A Induced myeloid leukemi 22.6 52 0.0018 25.6 2.7 27 138-164 76-104 (157)
14 2vof_A BCL-2-related protein A 22.0 52 0.0018 25.5 2.6 26 139-164 77-104 (157)
15 4aq3_A Apoptosis regulator BCL 21.4 1.2E+02 0.004 23.9 4.6 92 71-164 17-119 (169)
No 1
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=100.00 E-value=1.2e-37 Score=260.19 Aligned_cols=142 Identities=23% Similarity=0.364 Sum_probs=104.9
Q ss_pred hhhHHHHHHHHHhhhcCcEEEEeCCCCChhHHHHHHHHhcCchhHHHHHHHHHHHHhhccccccccccccHHHHHHhhcc
Q 027331 68 DASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAK 147 (225)
Q Consensus 68 ~~~~~~~~L~~~L~~~gL~~~~V~GDGNClFrAls~qL~~~~~~h~~lR~~vv~~l~~n~~~f~~fv~~~~~~Yl~~m~k 147 (225)
....+.+.+.+.|+..||++++|+|||||||||||+||+++++.|..||+.|++||++|++.|.+|++++|++||++|++
T Consensus 42 ~~~~e~~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~g~~~~h~~LR~~vv~yi~~n~d~f~~Fv~~~~e~Y~~~m~~ 121 (185)
T 3pfy_A 42 VEQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRK 121 (185)
T ss_dssp HHHHHHHHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTHHHHTTCC-------------
T ss_pred HHHHHHHHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhC
Confidence 33444444444448999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHhCCcEEEEecCCCceeEEecCCCCCCCCeEEEEecCCCcceeeecCC
Q 027331 148 VGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIR 210 (225)
Q Consensus 148 ~g~WGd~ieL~A~A~~f~v~I~V~~~~~~~~~i~~~p~~~~~~~~I~L~~~~~~HY~sl~~~~ 210 (225)
+++|||++||+|+|++|+++|+|++... .++..+.+......++|+|+|+.++|||||+..+
T Consensus 122 ~~~WGg~iEL~AlS~~~~v~I~V~~~~~-~~i~i~~g~~~~~~~~I~L~Y~~~~HYnSv~~p~ 183 (185)
T 3pfy_A 122 NNCHGNHIEMQAMAEMYNRPVEVYQYST-EPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPN 183 (185)
T ss_dssp ----CCHHHHHHHHHHHTSCEEEESSCS-SCSEEECTTSCCTTSCEEEEEETTTEEEEEECC-
T ss_pred CCccchHHHHHHHHHhhCCcEEEEECCC-CCeEEecCccCCCCCEEEEEECCCCCcccccCCC
Confidence 9999999999999999999999999753 2333333333345789999999999999998754
No 2
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=100.00 E-value=1.9e-33 Score=239.36 Aligned_cols=124 Identities=18% Similarity=0.248 Sum_probs=111.5
Q ss_pred hhcCcEEEEeCCCCChhHHHHHHHHhcCchhHHHHHHHHHHHHhhcccccc-ccccccHHHHHHhhcccCCCCCHHHHHH
Q 027331 81 NVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYE-GYVPMKYKRYYKNMAKVGEWGDHVTLQA 159 (225)
Q Consensus 81 ~~~gL~~~~V~GDGNClFrAls~qL~~~~~~h~~lR~~vv~~l~~n~~~f~-~fv~~~~~~Yl~~m~k~g~WGd~ieL~A 159 (225)
...||.+++|+|||||||||||+|| ++++.|..||+.+++||++|++.|. .|++++|++||++|+++++|||++||+|
T Consensus 16 ~~~~l~~~~i~~DGnCLFrAva~qL-~~~~~~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~~~~WGg~iEL~A 94 (212)
T 3by4_A 16 GENVLSVHPVLDDNSCLFHAIAYGI-FKQDSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGI 94 (212)
T ss_dssp CCSEEEEECCCCSTTHHHHHHHHHH-HSSCCSHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTSTTSCCCHHHHHH
T ss_pred CCCCeEEEEeCCCCchHHHHHHHHh-CCchHHHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcCCCEEccHHHHHH
Confidence 4458999999999999999999999 8999999999999999999999996 5678999999999999999999999999
Q ss_pred HHHHhCCcEEEEecCCCceeEEecCCCCCCCCeEEEEecCCCcceeeecC
Q 027331 160 AADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDI 209 (225)
Q Consensus 160 ~A~~f~v~I~V~~~~~~~~~i~~~p~~~~~~~~I~L~~~~~~HY~sl~~~ 209 (225)
+|++|+++|.|++... ...+.|.+.. ..++|+|+|+ ++|||+|+..
T Consensus 95 ls~~~~~~I~V~~~~~-~~~~~~~~~~--~~~~I~L~Y~-g~HYdsl~~~ 140 (212)
T 3by4_A 95 ISDALAVAIYVVDIDA-VKIEKFNEDK--FDNYILILFN-GIHYDSLTMN 140 (212)
T ss_dssp HHHHHTCEEEEEETTT-TEEEEESTTT--CSEEEEEEEC-SSCEEEEEET
T ss_pred HHHHHCCCEEEEECCC-CCeEEeCCCC--CCCeEEEEEc-CCcceEEecC
Confidence 9999999999999863 4566665543 5779999996 8999999993
No 3
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=99.97 E-value=2.1e-31 Score=222.50 Aligned_cols=125 Identities=17% Similarity=0.263 Sum_probs=108.7
Q ss_pred cEEEEeCCCCChhHHHHHHHHhcC-chh-----HHHHHHHHHHHHhhccccccccccccHHHHHHhhcccCCCCCHHHHH
Q 027331 85 LYEVKVSGDGNCQFRALSDQMYKS-PEY-----HKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQ 158 (225)
Q Consensus 85 L~~~~V~GDGNClFrAls~qL~~~-~~~-----h~~lR~~vv~~l~~n~~~f~~fv~~~~~~Yl~~m~k~g~WGd~ieL~ 158 (225)
+.+.+|+|||||||||||+||+++ ++. |.+||+.+++||++|++. .+++++|++||++|+++|+|||++||+
T Consensus 31 ~~v~rv~gDGnCLFrAva~qL~~~~~~~~~~~~~~~LR~~~~~yi~~~~~~--~~~~~~~~~Y~~~m~~~~~WGg~iEL~ 108 (185)
T 3phx_A 31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGSTLEAS 108 (185)
T ss_dssp EEEECCCSSTTHHHHHHHHHHSTTCCTTTHHHHHHHHHHHHHHHGGGCTTH--HHHCCCHHHHHHHHTSTTCCCBHHHHH
T ss_pred eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChHh--hhcCCCHHHHHHHhhCCCccCcHHHHH
Confidence 778889999999999999999998 666 999999999999999999 357899999999999999999999999
Q ss_pred HHHHHhCCcEEEEecCCCc---eeEEecCCCCCCCCeEEEEecCCCcceeeecCCCCC
Q 027331 159 AAADKFAAKICLLTSFRDT---CFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAP 213 (225)
Q Consensus 159 A~A~~f~v~I~V~~~~~~~---~~i~~~p~~~~~~~~I~L~~~~~~HY~sl~~~~d~p 213 (225)
|+|++|+++|+|++.+..+ ..+.|.+.. ..++|+|+|++++|||+|++..+.+
T Consensus 109 Als~~~~v~I~V~~~d~~~~~~~i~~f~~~~--~~~~I~L~Y~g~~HYdsl~~~~~~~ 164 (185)
T 3phx_A 109 MLAKEMGITIIIWTVAASDEVEAGIKFGDGD--VFTAVNLLHSGQTHFDALRILPQFE 164 (185)
T ss_dssp HHHHHHCCCEEEEEC--CCBCCEEEEESSCC--TTTSEEEEEETTTEEEEEEECGGGC
T ss_pred HHHHHHCCcEEEEEecCCCCceEEEEcCCCC--CCCEEEEEECCCcCchhceECCCCC
Confidence 9999999999999865533 245665543 3789999998779999999987764
No 4
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=99.97 E-value=5.4e-31 Score=224.94 Aligned_cols=126 Identities=17% Similarity=0.261 Sum_probs=110.5
Q ss_pred cEEEEeCCCCChhHHHHHHHHhcC-chh-----HHHHHHHHHHHHhhccccccccccccHHHHHHhhcccCCCCCHHHHH
Q 027331 85 LYEVKVSGDGNCQFRALSDQMYKS-PEY-----HKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQ 158 (225)
Q Consensus 85 L~~~~V~GDGNClFrAls~qL~~~-~~~-----h~~lR~~vv~~l~~n~~~f~~fv~~~~~~Yl~~m~k~g~WGd~ieL~ 158 (225)
+.+++|+|||||||||||+||+++ ++. |..||+.|++||++|++. .+++++|++||++|+++|+|||++||+
T Consensus 31 ~~V~rvpgDGnCLFrAVs~qL~~~~~~~~~~~~h~~LR~~va~yi~~n~d~--~~~~~~feeY~~~m~~~g~WGG~iEL~ 108 (219)
T 3phu_A 31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGSTLEAS 108 (219)
T ss_dssp EEEECCCCSSCHHHHHHHHHHCTTCCTTTHHHHHHHHHHHHHHHGGGCHHH--HHHCCCHHHHHHHHHSTTCCCCHHHHH
T ss_pred eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChhh--hhcCCCHHHHHHHhcCCCccCCHHHHH
Confidence 778899999999999999999998 566 999999999999999999 357899999999999999999999999
Q ss_pred HHHHHhCCcEEEEecCCC---ceeEEecCCCCCCCCeEEEEecCCCcceeeecCCCCCC
Q 027331 159 AAADKFAAKICLLTSFRD---TCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPV 214 (225)
Q Consensus 159 A~A~~f~v~I~V~~~~~~---~~~i~~~p~~~~~~~~I~L~~~~~~HY~sl~~~~d~p~ 214 (225)
|+|++|+++|+|+..+.. ...+.|.+.. ..++|+|+|++++|||+|++..+...
T Consensus 109 AlS~~~~v~I~V~~~d~~g~~~~i~~fge~~--~~~~I~L~Y~g~~HYdSL~~~~d~~~ 165 (219)
T 3phu_A 109 MLAKEMGITIIIWTVAASDEVEAGIKFGDGD--VFTAVNLLHSGQTHFDALRILPQFET 165 (219)
T ss_dssp HHHHHTTCCEEEEEESSSSBEEEEEEESSCC--TTTSEEEEEETTTEEEEEEECTTTCC
T ss_pred HHHHHhCCCEEEEEecCCCCceeEEEecCCC--CCCeEEEEECCCcCchhheECCCCCC
Confidence 999999999999986553 2355665543 37899999987799999999987643
No 5
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=99.87 E-value=7.4e-22 Score=170.12 Aligned_cols=95 Identities=14% Similarity=0.292 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhhccccccccccc--cHHHHHH-hhcccCCCCCHHHHHHHHHHhCCcEEEEecCCCceeEE--ecCCCC
Q 027331 113 KHVRKEVVKQLKDCRSMYEGYVPM--KYKRYYK-NMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIE--IMPQHQ 187 (225)
Q Consensus 113 ~~lR~~vv~~l~~n~~~f~~fv~~--~~~~Yl~-~m~k~g~WGd~ieL~A~A~~f~v~I~V~~~~~~~~~i~--~~p~~~ 187 (225)
..+|..+..||+.|+++|.+|+++ ++++||+ .+...++|||+++|+|+|+.|+++|.|+..+++..-+. ..|.
T Consensus 133 ~~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~~~~~~~~~~~-- 210 (234)
T 1tff_A 133 QFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPE-- 210 (234)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCC--
T ss_pred HHHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCCCccccccCCC--
Confidence 457999999999999999999975 8999999 79999999999999999999999999999765431111 1232
Q ss_pred CCCCeEEEEecCCCcceeeecCC
Q 027331 188 APKRELWLSFWSEVHYNSLYDIR 210 (225)
Q Consensus 188 ~~~~~I~L~~~~~~HY~sl~~~~ 210 (225)
...+.|+|+|. ++|||+|+|..
T Consensus 211 ~~~~~I~LlY~-pgHYdily~~~ 232 (234)
T 1tff_A 211 AATPSVYLLYK-TSHYNILYAAD 232 (234)
T ss_dssp CSSCSEEEEEE-TTEEEEEEECC
T ss_pred CCCCeEEEEEC-CCCceecccCC
Confidence 24678999995 66999999874
No 6
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=99.84 E-value=3.1e-20 Score=159.94 Aligned_cols=92 Identities=18% Similarity=0.296 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhhccccccccccc--cHHHHHH-hhcccCCCCCHHHHHHHHHHhCCcEEEEecCCCc---eeEEecCCCC
Q 027331 114 HVRKEVVKQLKDCRSMYEGYVPM--KYKRYYK-NMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDT---CFIEIMPQHQ 187 (225)
Q Consensus 114 ~lR~~vv~~l~~n~~~f~~fv~~--~~~~Yl~-~m~k~g~WGd~ieL~A~A~~f~v~I~V~~~~~~~---~~i~~~p~~~ 187 (225)
.+|..+..||+.|+++|.+|+++ ++++||+ .+...++|||+++|+|+|+.|+++|.|+..++.. ......|.+
T Consensus 137 ~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~~~~~~v~~~~f~~~- 215 (234)
T 2zfy_A 137 YLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEG- 215 (234)
T ss_dssp HHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-CCSSCCEEEEESTT-
T ss_pred HHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCCCCCCcccceeCCCC-
Confidence 67888889999999999999975 8999997 6999999999999999999999999999976542 222233432
Q ss_pred CCCCeEEEEecCCCcceeeec
Q 027331 188 APKRELWLSFWSEVHYNSLYD 208 (225)
Q Consensus 188 ~~~~~I~L~~~~~~HY~sl~~ 208 (225)
..+.|+|+|. .+|||+|+|
T Consensus 216 -~~p~I~LlY~-pgHYdiLy~ 234 (234)
T 2zfy_A 216 -SEPKVYLLYR-PGHYDILYK 234 (234)
T ss_dssp -CCCSEEEEEE-TTEEEEEEC
T ss_pred -CCCeEEEEEC-CCCcccCCC
Confidence 3678999995 569999986
No 7
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=99.81 E-value=3.1e-19 Score=157.13 Aligned_cols=101 Identities=16% Similarity=0.246 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhhcccccccccc--ccHHHHHH-hhcccCCCCCHHHHHHHHHHhCCcEEEEecCCC--c--eeEE-ecC
Q 027331 113 KHVRKEVVKQLKDCRSMYEGYVP--MKYKRYYK-NMAKVGEWGDHVTLQAAADKFAAKICLLTSFRD--T--CFIE-IMP 184 (225)
Q Consensus 113 ~~lR~~vv~~l~~n~~~f~~fv~--~~~~~Yl~-~m~k~g~WGd~ieL~A~A~~f~v~I~V~~~~~~--~--~~i~-~~p 184 (225)
..||..+..||+.|+++|.+|++ +++++||+ .+...++|||+++|.|+|+.|+++|.|+..+++ + .... | |
T Consensus 171 ~~LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~f-p 249 (284)
T 4dhi_B 171 MFFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDI-P 249 (284)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEE-S
T ss_pred HHHHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccC-C
Confidence 46778899999999999999996 48999999 899999999999999999999999999986542 1 2233 5 7
Q ss_pred CCCC-CCCeEEEEecCCCcceeeecCCCCCCC
Q 027331 185 QHQA-PKRELWLSFWSEVHYNSLYDIRDAPVP 215 (225)
Q Consensus 185 ~~~~-~~~~I~L~~~~~~HY~sl~~~~d~p~~ 215 (225)
.+.. ..+.|+|.| ..+|||.||+....|+.
T Consensus 250 ~~~~~~~p~I~LLY-rpgHYDILY~~~p~~~~ 280 (284)
T 4dhi_B 250 SDDQQIAPEITLLY-RPGHYDVIYKKDSTEAS 280 (284)
T ss_dssp CCCSCCCCSEEEEE-ETTEEEEEEECC-----
T ss_pred CCCCCCCCEEEEee-cCCCccccccCCCCchh
Confidence 6432 347899999 67899999999866543
No 8
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=99.76 E-value=2.8e-18 Score=157.97 Aligned_cols=94 Identities=19% Similarity=0.291 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhhccccccccccc--cHHHHHH-hhcccCCCCCHHHHHHHHHHhCCcEEEEecCCC---ceeEEecCC
Q 027331 112 HKHVRKEVVKQLKDCRSMYEGYVPM--KYKRYYK-NMAKVGEWGDHVTLQAAADKFAAKICLLTSFRD---TCFIEIMPQ 185 (225)
Q Consensus 112 h~~lR~~vv~~l~~n~~~f~~fv~~--~~~~Yl~-~m~k~g~WGd~ieL~A~A~~f~v~I~V~~~~~~---~~~i~~~p~ 185 (225)
...+|..+..||+.|+++|.+|+++ ++++||+ .+...++|||+++|.|+|+.|+++|.|+..++. .......|.
T Consensus 300 v~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~~ 379 (399)
T 4ddg_A 300 VVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPE 379 (399)
T ss_dssp HHHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETTT
T ss_pred HHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCCC
Confidence 3468888899999999999999975 7999999 899999999999999999999999999975542 111122354
Q ss_pred CCCCCCeEEEEecCCCcceeeec
Q 027331 186 HQAPKRELWLSFWSEVHYNSLYD 208 (225)
Q Consensus 186 ~~~~~~~I~L~~~~~~HY~sl~~ 208 (225)
+ ..+.|+|.| ..+|||.||+
T Consensus 380 ~--~~~~I~LLY-rPgHYDiLY~ 399 (399)
T 4ddg_A 380 G--SEPKVYLLY-RPGHYDILYK 399 (399)
T ss_dssp T--CCCCCEEEE-ETBEEEEEEC
T ss_pred C--CCCEEEEEE-cCCccccCCC
Confidence 3 367899999 6789999986
No 9
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
Probab=98.91 E-value=1.8e-08 Score=90.62 Aligned_cols=127 Identities=19% Similarity=0.327 Sum_probs=89.8
Q ss_pred cEEEEeCCCCChhHHHHHHHHhcCchhHHHHHHHHHHHHhhccc-cc-----------cccc-----------cccHHHH
Q 027331 85 LYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRS-MY-----------EGYV-----------PMKYKRY 141 (225)
Q Consensus 85 L~~~~V~GDGNClFrAls~qL~~~~~~h~~lR~~vv~~l~~n~~-~f-----------~~fv-----------~~~~~~Y 141 (225)
|....+.||||||.+|+|.+++|-.|....+|+.+.+-|+.... .| +.|+ ..+|+.-
T Consensus 112 L~pL~t~GDGnCLLHAvSqamWGv~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~EW~~I 191 (390)
T 3dkb_A 112 LVALKTNGDGNCLMHATSQYMWGVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEWDNL 191 (390)
T ss_dssp EEEBCCCCSSCHHHHHHHHHHHSSCSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSHHHHHH
T ss_pred eEEEEecCCCchHHHHHhHHhcCCCCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHHHHHHH
Confidence 56778899999999999999999999999999999888876542 11 1232 1466666
Q ss_pred HHhhcccC---------CCCCHHHHHHHHHHhCCcEEEEecC--C---Cc-ee------EEecCC----CCCCCCeEEEE
Q 027331 142 YKNMAKVG---------EWGDHVTLQAAADKFAAKICLLTSF--R---DT-CF------IEIMPQ----HQAPKRELWLS 196 (225)
Q Consensus 142 l~~m~k~g---------~WGd~ieL~A~A~~f~v~I~V~~~~--~---~~-~~------i~~~p~----~~~~~~~I~L~ 196 (225)
++..+... .--.++.+.++|+++++||+|+... + ++ .+ =.|.|- ......+|.|+
T Consensus 192 v~~Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI~Lg 271 (390)
T 3dkb_A 192 IKMASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIVLG 271 (390)
T ss_dssp HHHTSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCEEEE
T ss_pred HHHhCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCceEEE
Confidence 66544332 1236899999999999999999632 1 11 11 123443 22346799999
Q ss_pred ecCCCcceeeecCCCC
Q 027331 197 FWSEVHYNSLYDIRDA 212 (225)
Q Consensus 197 ~~~~~HY~sl~~~~d~ 212 (225)
|. .+||.+|.+..+-
T Consensus 272 Y~-s~HFsaLV~me~~ 286 (390)
T 3dkb_A 272 YD-SHHFVPLVTLKDS 286 (390)
T ss_dssp EC-SSCEEEEEEBCSS
T ss_pred ec-cCceeeeeecccC
Confidence 94 6899999998753
No 10
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=98.78 E-value=2.8e-08 Score=90.81 Aligned_cols=128 Identities=13% Similarity=0.188 Sum_probs=94.9
Q ss_pred CcEEEEeCCCCChhHHHHHHHHhcCchhHHHHHHHHHHHHhhccccc-c---------------ccc--c----ccHHHH
Q 027331 84 GLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMY-E---------------GYV--P----MKYKRY 141 (225)
Q Consensus 84 gL~~~~V~GDGNClFrAls~qL~~~~~~h~~lR~~vv~~l~~n~~~f-~---------------~fv--~----~~~~~Y 141 (225)
.|......||||||.+|+|..++|-.|....||+.+.+-|......| . .|. + .+|+.-
T Consensus 188 rL~pL~t~GDGNCLLHAvSqamWGV~DrdlvLRkaL~~~L~~~~~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW~~i 267 (454)
T 3zrh_A 188 RLYALWNRTAGDCLLDSVLQATWGIYDKDSVLRKALHDSLHDCSHWFYTRWKDWESWYSQSFGLHFSLREEQWQEDWAFI 267 (454)
T ss_dssp CEEEBCCCCSSCHHHHHHHHTTTSSCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHH
T ss_pred ceeEeeecCCCccHHHHHHHHhhcccCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHH
Confidence 35567788999999999999999999999999999998887643222 1 232 2 356666
Q ss_pred HHhhcccCCCCCHHHHHHHHHHhCCcEEEEecCCC----c-ee------EEecCCCC----CCCCeEEEEecCCCcceee
Q 027331 142 YKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRD----T-CF------IEIMPQHQ----APKRELWLSFWSEVHYNSL 206 (225)
Q Consensus 142 l~~m~k~g~WGd~ieL~A~A~~f~v~I~V~~~~~~----~-~~------i~~~p~~~----~~~~~I~L~~~~~~HY~sl 206 (225)
++..+.+|.--.++.+.++|+++++||+|+....- + .+ =.|.|-.. ....+|.|+|. ..||.+|
T Consensus 268 v~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~-~gHFsaL 346 (454)
T 3zrh_A 268 LSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYT-RGHFSAL 346 (454)
T ss_dssp HHHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEE-TTEEEEE
T ss_pred HHHhcCCcchHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEec-ccceeee
Confidence 77677788877899999999999999999984210 0 00 12445332 34679999995 6799999
Q ss_pred ecCCCC
Q 027331 207 YDIRDA 212 (225)
Q Consensus 207 ~~~~d~ 212 (225)
.+..+.
T Consensus 347 V~~~~~ 352 (454)
T 3zrh_A 347 VAMEND 352 (454)
T ss_dssp EEBCCC
T ss_pred eecccc
Confidence 998764
No 11
>4a5u_A RNA replicase polyprotein; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Turnip yellow mosaic virus}
Probab=73.25 E-value=5.3 Score=31.81 Aligned_cols=106 Identities=16% Similarity=0.180 Sum_probs=62.7
Q ss_pred hhhcCcEEEEeCCCCChhHHHHHHHHhcCchhHHHHHHHHHHHHhhc-cccccccccccHHHHHHhhcccCCCCCHHHHH
Q 027331 80 LNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDC-RSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQ 158 (225)
Q Consensus 80 L~~~gL~~~~V~GDGNClFrAls~qL~~~~~~h~~lR~~vv~~l~~n-~~~f~~fv~~~~~~Yl~~m~k~g~WGd~ieL~ 158 (225)
++..+-...+.| .-+||.-|++.|+.-.+ ..|-. .|... ||. .+. .+ .+++-|- .--.+.
T Consensus 49 ~R~~~~S~~P~P-~~~CLL~Ais~at~~s~---~~LW~----~Lc~~lPDS---lL~---n~---ei~~~GL--STDhlt 109 (160)
T 4a5u_A 49 LRSLPSNHLPQP-TLNCLLSAVSDQTKVSE---EHLWE----SLQTILPDS---QLS---NE---ETNTLGL--STEHLT 109 (160)
T ss_dssp EECSCCCCCCCC-SSCHHHHHHHHHHCCCH---HHHHH----HHTTTSCGG---GTS---SH---HHHHHCC--CHHHHH
T ss_pred ccCCCCCCCCCc-chhhhHHHHhhccCCCH---HHHHH----HHHHhCchh---hcC---ch---hhhhcCC--cHHHHH
Confidence 333344444555 48899999999987765 23322 33211 221 110 01 1122232 234577
Q ss_pred HHHHHhCCcEEEEecCCCceeEEecCCCCCCCCeEEEEecCC--CcceeeecC
Q 027331 159 AAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSE--VHYNSLYDI 209 (225)
Q Consensus 159 A~A~~f~v~I~V~~~~~~~~~i~~~p~~~~~~~~I~L~~~~~--~HY~sl~~~ 209 (225)
|+|-.|+.+..|.+..+ .+.|...+ ....+.|.|..+ .||......
T Consensus 110 aLa~~~~~~c~~hs~~~---~~~~Gi~~--as~~~~I~ht~G~P~HFs~~~~l 157 (160)
T 4a5u_A 110 ALAHLYNFQATVYSDRG---PILFGPSD--TIKRIDITHTTGPPSHFSPGKRL 157 (160)
T ss_dssp HHHHHHTEEEEEEETTE---EEEESCSS--CSEEEEEEEECSSSCEEEESCCC
T ss_pred HHHHHHheEEEEEcCCc---eEEeecCC--CceEEEEEeCCCCCCCccCCccc
Confidence 89999999999998644 56776654 356788888654 899876543
No 12
>2nl9_A Fusion protein consisting of induced myeloid LEUK differentiation protein MCL-1 homolog...; apoptosis, MCL-1, BIM; HET: MSE; 1.55A {Rattus norvegicus} PDB: 2nla_A 3d7v_A 3io9_A 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 1wsx_A 2jm6_B 2roc_A 2rod_A 2kbw_A 3mk8_B
Probab=25.09 E-value=40 Score=26.11 Aligned_cols=53 Identities=17% Similarity=0.257 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhhcccccccccc-------c---cHHHHHHhhcccC--CCCCHHHHHHHHHHh
Q 027331 112 HKHVRKEVVKQLKDCRSMYEGYVP-------M---KYKRYYKNMAKVG--EWGDHVTLQAAADKF 164 (225)
Q Consensus 112 h~~lR~~vv~~l~~n~~~f~~fv~-------~---~~~~Yl~~m~k~g--~WGd~ieL~A~A~~f 164 (225)
+..||+..-+..++|+..|..++. . .|..=.+++-.+| .||--+.|.++|-.+
T Consensus 40 ~~~Lr~i~dele~~~~~~f~~~~~~l~i~~~~~~~~f~~Va~elF~dGi~nWGRIValf~F~~~l 104 (157)
T 2nl9_A 40 LETLRRVGDGVQRNHETAFQGMLRKLDIKNEDDVKSLSRVMIHVFSDGVTNWGRIVTLISFGAFV 104 (157)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHCCCSTTCCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Confidence 345555555555555555544321 1 2445556777788 599999999888654
No 13
>4hw4_A Induced myeloid leukemia cell differentiation Pro 1; anti-apoptotic protein, BH3 peptides, apoptosis; 1.53A {Homo sapiens} PDB: 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 2kbw_A 4hw3_A* 4hw2_A* 3d7v_A 3io9_A 2nl9_A* 2nla_A 4g35_A* 1wsx_A 2jm6_B 2roc_A 2rod_A 3mk8_B
Probab=22.60 E-value=52 Score=25.65 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=18.2
Q ss_pred HHHHHHhhcccC--CCCCHHHHHHHHHHh
Q 027331 138 YKRYYKNMAKVG--EWGDHVTLQAAADKF 164 (225)
Q Consensus 138 ~~~Yl~~m~k~g--~WGd~ieL~A~A~~f 164 (225)
|..-.+++-.+| .||--+.|.+++-.+
T Consensus 76 F~~Va~elF~dGi~NWGRIVaLfaFgg~l 104 (157)
T 4hw4_A 76 LSRVMIHVFSDGVTNWGRIVTLISFGAFV 104 (157)
T ss_dssp HHHHHHHHGGGSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCccHHHHHHHHHHHHHH
Confidence 333345566677 799988888777554
No 14
>2vof_A BCL-2-related protein A1; BH3, apoptosis, Pro-surviVal, mitochondrion, protein- complex; 1.8A {Mus musculus} PDB: 2vog_A 2voh_A* 2voi_A 3i1h_A 3mqp_A 2vm6_A
Probab=21.95 E-value=52 Score=25.46 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=18.8
Q ss_pred HHHHHhhcccC--CCCCHHHHHHHHHHh
Q 027331 139 KRYYKNMAKVG--EWGDHVTLQAAADKF 164 (225)
Q Consensus 139 ~~Yl~~m~k~g--~WGd~ieL~A~A~~f 164 (225)
..=.+++-.+| +||--+.|.+++-.+
T Consensus 77 ~~Va~elF~dg~inWGRIVal~~F~g~l 104 (157)
T 2vof_A 77 NQVMEKEFEDGIINWGRIVTIFAFGGVL 104 (157)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 33345666777 899988888887655
No 15
>4aq3_A Apoptosis regulator BCL-2, BCL-2-like protein 1; chimera; HET: 398; 2.40A {Homo sapiens} PDB: 1g5m_A 1gjh_A 1ysw_A* 2o21_A* 2o22_A*
Probab=21.41 E-value=1.2e+02 Score=23.90 Aligned_cols=92 Identities=12% Similarity=0.112 Sum_probs=47.5
Q ss_pred HHHHHHHHHhhhcCcEEEEeCCCCChhHHHHHHHHhcCchhHHHHHHHHHHHHhhcccccccccc-------c---cHHH
Q 027331 71 LDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVP-------M---KYKR 140 (225)
Q Consensus 71 ~~~~~L~~~L~~~gL~~~~V~GDGNClFrAls~qL~~~~~~h~~lR~~vv~~l~~n~~~f~~fv~-------~---~~~~ 140 (225)
.=.+-+.-+|...|+.-...+ ..=..++..-+-...+.-+..||+..-+..+.++..|..+.. . .|..
T Consensus 17 lv~~yi~~kL~q~g~~~~~~~--~~~~~~~~~~~~~~~~~v~~~Lr~igdele~~~~~~f~~~~~~L~it~~~a~~~F~~ 94 (169)
T 4aq3_A 17 IVMKYIHYKLSQRGYEWDAGD--DVEENRTEAPEGTESEVVHLALRQAGDDFSRRYRGDFAEMSSQLHLTPFTARGRFAT 94 (169)
T ss_dssp HHHHHHHHHHHHTTCCCC---------------------CHHHHHHHHHHHHHHHTHHHHHHHHHHCCCCTTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCccc--ccccccCCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCCcHHHHHHH
Confidence 334566777877777543211 100012222222344456778888877777778887766531 2 2333
Q ss_pred HHHhhcccC-CCCCHHHHHHHHHHh
Q 027331 141 YYKNMAKVG-EWGDHVTLQAAADKF 164 (225)
Q Consensus 141 Yl~~m~k~g-~WGd~ieL~A~A~~f 164 (225)
-.+++-.+| .||--+.|.+++-.+
T Consensus 95 Va~elF~dGiNWGRIVaLfaF~g~L 119 (169)
T 4aq3_A 95 VVEELFRDGVNWGRIVAFFEFGGVM 119 (169)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 344554443 899889988877544
Done!