Query 027332
Match_columns 225
No_of_seqs 168 out of 460
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 08:22:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027332.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027332hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0324 Uncharacterized conser 100.0 1.7E-59 3.6E-64 406.8 15.2 199 22-224 12-212 (214)
2 PF05903 Peptidase_C97: PPPDE 100.0 1.5E-47 3.2E-52 316.6 9.9 137 24-160 1-150 (151)
3 PF04970 LRAT: Lecithin retino 94.0 0.045 9.7E-07 43.3 2.8 36 92-129 83-118 (125)
4 PF05608 DUF778: Protein of un 91.4 0.47 1E-05 39.5 5.4 40 96-135 75-114 (136)
5 PF09601 DUF2459: Protein of u 71.5 5 0.00011 34.3 3.6 41 94-135 97-160 (173)
6 KOG2673 Uncharacterized conser 54.4 9.9 0.00021 37.6 2.5 37 134-176 195-231 (485)
7 PF13387 DUF4105: Domain of un 52.9 17 0.00037 30.4 3.5 54 87-140 97-154 (176)
8 PF11931 DUF3449: Domain of un 48.9 5.7 0.00012 35.0 0.0 26 136-161 85-110 (196)
9 PF08405 Calici_PP_N: Viral po 43.9 35 0.00076 32.5 4.3 91 47-153 22-117 (358)
10 cd00224 Mog1 homolog to Ran-Bi 43.8 12 0.00026 32.1 1.2 31 149-179 4-36 (173)
11 PF04046 PSP: PSP; InterPro: 34.3 35 0.00077 23.8 2.1 25 126-150 5-31 (48)
12 PF15643 Tox-PL-2: Papain fold 33.0 35 0.00076 27.2 2.2 44 97-147 2-45 (100)
13 PF13964 Kelch_6: Kelch motif 29.2 47 0.001 21.6 2.0 20 47-66 3-22 (50)
14 smart00581 PSP proline-rich do 29.1 47 0.001 23.7 2.1 24 127-150 10-35 (54)
15 cd02998 PDI_a_ERp38 PDIa famil 28.2 22 0.00049 25.5 0.3 46 98-143 34-80 (105)
16 PF07646 Kelch_2: Kelch motif; 24.8 68 0.0015 20.8 2.2 17 48-64 4-20 (49)
17 PF04412 DUF521: Protein of un 22.6 79 0.0017 30.7 3.0 46 92-138 267-316 (400)
18 PF04894 DUF650: Archaeal prot 22.3 73 0.0016 29.5 2.6 42 127-168 172-218 (273)
19 PF11022 DUF2611: Protein of u 21.8 35 0.00075 25.6 0.3 28 134-161 7-34 (71)
20 PF01288 HPPK: 7,8-dihydro-6-h 21.5 1.2E+02 0.0027 24.3 3.5 42 69-110 34-76 (127)
21 KOG3150 Uncharacterized conser 21.3 1.8E+02 0.0038 25.4 4.5 54 84-137 76-132 (182)
22 KOG2636 Splicing factor 3a, su 21.0 49 0.0011 32.9 1.2 26 136-161 385-410 (497)
23 PF04603 Mog1: Ran-interacting 20.7 40 0.00087 28.1 0.5 31 149-179 5-36 (141)
No 1
>KOG0324 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.7e-59 Score=406.85 Aligned_cols=199 Identities=49% Similarity=0.931 Sum_probs=180.7
Q ss_pred CcceEEEEEeeCCCcchhhhhcccceeeeeeEEeCeEEeecccccCCCCeEeeCCCCCCCCceEEEEEeccccCCHHHHH
Q 027332 22 NHALLYLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPGFIFRRSVLLGTTNLSRAEFR 101 (225)
Q Consensus 22 ~~~~V~LnVYDLs~~n~~l~~lG~GI~HTGVeV~G~EY~FG~h~~~~sGI~~~~P~~~pg~~~r~sI~LG~T~ls~~e~~ 101 (225)
...+|+|||||+++.|.|++|+|+|||||||||||+||+||+|+++.+|||+++|++||+++||++|.||.|++++.+|+
T Consensus 12 ~~~~v~lnvyd~~~~n~y~~~lGlGIfHSgIeV~g~EyayG~h~~~~sGIfe~~P~~~~~f~fr~sI~lG~Td~~~~~v~ 91 (214)
T KOG0324|consen 12 GRVPVYLNVYDLTPINKYLYWLGLGIFHSGIEVHGVEYAYGAHEYPSSGIFEVEPGNCPEFTFRKSILLGSTDLTEDDVR 91 (214)
T ss_pred cceeeeeeeecceehhhhhhhhcceeEeeeEEEeceeeeccccccCCCCeEeeCCCCCCCCceeEEEEecCCCCCHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCcccccccccchHHHHHHHHhcCCCCChHHHHhhhhc--cccccccCCcceecccccCCCCCCccCCC
Q 027332 102 SFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLG--SFCNCLLPESIQITAVAHLPDRPTYSDDD 179 (225)
Q Consensus 102 ~~l~~L~~~f~g~tYhLL~rNCNHFSd~lc~~L~Gk~IP~wInrlA~iG--s~~~cllP~~~~~~~v~~~~~~~~~~~~~ 179 (225)
+||++|+++|+|++||||.|||||||+++|++|+||+||+||||||++| .+|+|++|.....+++.+.+.-....+++
T Consensus 92 ~~le~L~~ey~G~~YhL~~kNCNHFsn~la~~Ltgk~IP~winrLa~~~~~~~~~~~~p~~~~~t~~~~~~~~~~~~~~~ 171 (214)
T KOG0324|consen 92 RILEELSEEYRGNSYHLLTKNCNHFSNELALQLTGKKIPSWVNRLARAGLCSLCNCLLPMLQNLTPVVLASSVVERFDEE 171 (214)
T ss_pred HHHHHHHhhcCCceehhhhhccchhHHHHHHHHcCCCccHHHHHHHHHhhhhHHhhcchhhhcCCccccccccccccCcc
Confidence 9999999999999999999999999999999999999999999999999 88999999999999999888877766666
Q ss_pred CCCCCCCCCCccchhhhhhhcccccCCCCCceeccccCccccccc
Q 027332 180 ILESPASSITAESEEEEAAVHHLLTAPNSDGAFLKEKPVRRTKEA 224 (225)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 224 (225)
+.+.. ...+..+ +....+|+++++..+..++..+.+++|..
T Consensus 172 ~~~~~-~~~s~~s---~~~~~~~~s~s~~~~~~~~~~~~~~~~~~ 212 (214)
T KOG0324|consen 172 ENSKK-KLASSGS---PSRSAPLLSASDSGLILLSGPSLKRERNT 212 (214)
T ss_pred ccccc-cccccCC---CcccCCCCCcCcCccccccCccccccccc
Confidence 54222 1222233 26778999999999999998888888764
No 2
>PF05903 Peptidase_C97: PPPDE putative peptidase domain; InterPro: IPR008580 This domain consists of the N-terminal portion of several eukaryotic sequences. The function of this domain is unknown.; PDB: 2WP7_A 3EBQ_A.
Probab=100.00 E-value=1.5e-47 Score=316.56 Aligned_cols=137 Identities=50% Similarity=0.971 Sum_probs=106.3
Q ss_pred ceEEEEEeeCCCcch------hhhhccc---ceeeeeeEEeCeEEeecccccCCCCeEeeCCCC-CCCCceEEEEEeccc
Q 027332 24 ALLYLNVYDLTPLNN------YLYWFGL---GIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKS-CPGFIFRRSVLLGTT 93 (225)
Q Consensus 24 ~~V~LnVYDLs~~n~------~l~~lG~---GI~HTGVeV~G~EY~FG~h~~~~sGI~~~~P~~-~pg~~~r~sI~LG~T 93 (225)
.+|+||||||++.|. .+.++|. |||||||||+|+||+||+++.+.+||+++.|+. .++++|++++.||+|
T Consensus 1 h~V~L~vYDL~~~~~~~~~~~~~~~lG~~~~Gi~HtgV~v~G~Ey~fg~~~~~~~GI~~~~P~~~~~~~~~~~~i~lG~T 80 (151)
T PF05903_consen 1 HPVYLNVYDLSPINNGMARQLSLMWLGLQIDGIYHTGVEVYGKEYAFGGHDDPDSGIFECPPGHTSPGGTPRESIELGET 80 (151)
T ss_dssp -EEEEEEEETT---TTHHHHHHHHHCSS-----EEEEEEETTEEEEEET-----TECEEESTT-STT--S-SEEEEEEEE
T ss_pred CeEEEEEEECccccchhHHHhhHhhhCCccCceEEEEEEEccEEEEecccccccCcceEccCcCCCCCcceEEEEeCCCc
Confidence 479999999997655 4568998 999999999999999999999889999999998 788899999999999
Q ss_pred cCCHHHHHHHHHHhccCCCCCcccccccccchHHHHHHHHhcCCCCChHHHHhhhhcc---ccccccCCc
Q 027332 94 NLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLGS---FCNCLLPES 160 (225)
Q Consensus 94 ~ls~~e~~~~l~~L~~~f~g~tYhLL~rNCNHFSd~lc~~L~Gk~IP~wInrlA~iGs---~~~cllP~~ 160 (225)
.+++++|+++|++|+++|++++||||+|||||||+++|++|+|++||+||||+|+++. +..|++|.-
T Consensus 81 ~~~~~~~~~~l~~l~~~~~~~~Y~Ll~~NCNhFs~~l~~~L~g~~iP~~i~~~a~~~~~~p~~~~l~p~~ 150 (151)
T PF05903_consen 81 TLSEEEFEEILRSLSREFTGDSYHLLNRNCNHFSDALCQFLTGKPIPSWINRLARIALSSPFGQMLLPML 150 (151)
T ss_dssp ---HHHHHHHHHHHHTT-SGGG-BTTTBSHHHHHHHHHHHHHS----HHHHTHHHHHHTSHHHHHHCC--
T ss_pred cCCHHHHHHHHHHHHhhccCCcchhhhhhhhHHHHHHHHHhCCCCCCHHHHhhhHHhcccchhhhhCcCC
Confidence 9999999999999999999999999999999999999999999999999999999986 679999964
No 3
>PF04970 LRAT: Lecithin retinol acyltransferase; InterPro: IPR007053 This entry represents a conserved sequence region found in proteins from viruses, bacteria and eukaryotes. It contains a well-conserved NCEHF motif, though its function in these proteins is unknown.; PDB: 2KYT_A 4DOT_A 4FA0_A.
Probab=94.04 E-value=0.045 Score=43.33 Aligned_cols=36 Identities=28% Similarity=0.380 Sum_probs=18.0
Q ss_pred cccCCHHHHHHHHHHhccCCCCCcccccccccchHHHH
Q 027332 92 TTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEE 129 (225)
Q Consensus 92 ~T~ls~~e~~~~l~~L~~~f~g~tYhLL~rNCNHFSd~ 129 (225)
....+.+++-+-...+-.+ ...|||+.+||=||+.-
T Consensus 83 ~~~~~~~~iv~rA~~~lg~--~~~Y~l~~nNCEhFa~~ 118 (125)
T PF04970_consen 83 YKPFPPEEIVERAESRLGK--EFEYNLLFNNCEHFATW 118 (125)
T ss_dssp S--S-HHHHHHHHHHTTT---EESS---HHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHcC--CCccCCCcCCHHHHHHH
Confidence 3345555544443333221 23899999999999876
No 4
>PF05608 DUF778: Protein of unknown function (DUF778); InterPro: IPR008496 This family consists of several eukaryotic proteins of unknown function.
Probab=91.42 E-value=0.47 Score=39.53 Aligned_cols=40 Identities=18% Similarity=0.440 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHhccCCCCCcccccccccchHHHHHHHHhc
Q 027332 96 SRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLT 135 (225)
Q Consensus 96 s~~e~~~~l~~L~~~f~g~tYhLL~rNCNHFSd~lc~~L~ 135 (225)
+.+...+.|++-.++|....|+|+..||.+|...+...|.
T Consensus 75 ~~~~wD~Av~~a~~~y~~r~yNlf~~NCHSfVA~aLN~m~ 114 (136)
T PF05608_consen 75 GAESWDDAVQKASEEYKHRMYNLFTDNCHSFVANALNRMR 114 (136)
T ss_pred cHHHHHHHHHHHHHHHhhCceeeeccCcHHHHHHHHHhcc
Confidence 4566777788878899999999999999999988877764
No 5
>PF09601 DUF2459: Protein of unknown function (DUF2459); InterPro: IPR011727 This conserved hypothetical protein of unknown function is predominantly found in proteobacteria. Its function is unknown and its genome context is not well-conserved. It is found amid urease genes in at least one species.
Probab=71.51 E-value=5 Score=34.32 Aligned_cols=41 Identities=24% Similarity=0.547 Sum_probs=30.9
Q ss_pred cCCHHHHHHHHHHhccCCCCC-----------------------cccccccccchHHHHHHHHhc
Q 027332 94 NLSRAEFRSFMEHLSGKYHGD-----------------------TYHLIAKNCNHFTEEVCMQLT 135 (225)
Q Consensus 94 ~ls~~e~~~~l~~L~~~f~g~-----------------------tYhLL~rNCNHFSd~lc~~L~ 135 (225)
.+++++++++++.++..|.-+ +|+|+ ++||+-+++..+...
T Consensus 97 ~ls~~~y~~L~~~I~~sf~~~~~g~~~~i~~~y~~~d~Fy~A~G~Y~l~-~TCNtWta~~L~aaG 160 (173)
T PF09601_consen 97 RLSEAQYRRLVAFIRASFQRDADGRPIPIGPGYGPDDAFYEAKGRYSLF-NTCNTWTARALKAAG 160 (173)
T ss_pred EcCHHHHHHHHHHHHHHhccCCCCCeEEeccccCCCCeeEeeccceEee-cCcHHHHHHHHHHcC
Confidence 679999999998876555433 56665 799999999766543
No 6
>KOG2673 consensus Uncharacterized conserved protein, contains PSP domain [Function unknown]
Probab=54.38 E-value=9.9 Score=37.63 Aligned_cols=37 Identities=27% Similarity=0.410 Sum_probs=27.7
Q ss_pred hcCCCCChHHHHhhhhccccccccCCcceecccccCCCCCCcc
Q 027332 134 LTGKCIPGWVNRMARLGSFCNCLLPESIQITAVAHLPDRPTYS 176 (225)
Q Consensus 134 L~Gk~IP~wInrlA~iGs~~~cllP~~~~~~~v~~~~~~~~~~ 176 (225)
|.+..||.|++|+-++| .|..|...+.++++...-|+
T Consensus 195 l~~~d~P~~~yRMR~lG------YPPg~L~~s~~e~s~i~if~ 231 (485)
T KOG2673|consen 195 LSPGDPPEWKYRMRRLG------YPPGYLRKSDMEVSGIKIFS 231 (485)
T ss_pred CCCCCchHHHHHHhhcc------CCchhhhhhhcccccceeec
Confidence 45789999999999999 66666555666666665555
No 7
>PF13387 DUF4105: Domain of unknown function (DUF4105)
Probab=52.93 E-value=17 Score=30.44 Aligned_cols=54 Identities=20% Similarity=0.273 Sum_probs=41.0
Q ss_pred EEEeccccCCHHHHHHHHHHhcc----CCCCCcccccccccchHHHHHHHHhcCCCCC
Q 027332 87 SVLLGTTNLSRAEFRSFMEHLSG----KYHGDTYHLIAKNCNHFTEEVCMQLTGKCIP 140 (225)
Q Consensus 87 sI~LG~T~ls~~e~~~~l~~L~~----~f~g~tYhLL~rNCNHFSd~lc~~L~Gk~IP 140 (225)
.|..=...++++|.+.++..|.+ .-++-.||.+..||=.-.-++.....++.+|
T Consensus 97 ~v~~y~LnLs~ee~~~l~~~l~e~~~~~~~~~~Y~f~~~NCat~i~~~l~~~~~~~l~ 154 (176)
T PF13387_consen 97 DVWEYPLNLSPEEKQRLFRHLWENANPENRPYRYNFFTDNCATRIRDLLDKARPGSLP 154 (176)
T ss_pred cEEEEEeeCCHHHHHHHHHHHHHhccccccceeehhhhcchHHHHHHHHHHHcCCCee
Confidence 34444558899999998887743 2355699999999999998888888776554
No 8
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=48.93 E-value=5.7 Score=35.01 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=0.0
Q ss_pred CCCCChHHHHhhhhccccccccCCcc
Q 027332 136 GKCIPGWVNRMARLGSFCNCLLPESI 161 (225)
Q Consensus 136 Gk~IP~wInrlA~iGs~~~cllP~~~ 161 (225)
|||||-|+-.|.-++.-+.|=+....
T Consensus 85 GkPIPyWLYKLhGL~~ey~CEICGN~ 110 (196)
T PF11931_consen 85 GKPIPYWLYKLHGLGVEYKCEICGNQ 110 (196)
T ss_dssp --------------------------
T ss_pred CCcccHHHHHHhCCCCeeeeEeCCCc
Confidence 89999999999999988877766544
No 9
>PF08405 Calici_PP_N: Viral polyprotein N-terminal; InterPro: IPR013614 This domain is found at the N terminus of non-structural viral polyproteins of the Caliciviridae subfamily. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity, 0044419 interspecies interaction between organisms
Probab=43.88 E-value=35 Score=32.55 Aligned_cols=91 Identities=29% Similarity=0.470 Sum_probs=51.9
Q ss_pred eeeeeeEEeCeEEeecccccC---CCCeEeeCCCCCCCCceEEEEEeccccCCHHHHHHHHHHhccCCCCCccccccccc
Q 027332 47 IFHSGIEAHGLEYGFGAHEYR---TSGVFEVEPKSCPGFIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNC 123 (225)
Q Consensus 47 I~HTGVeV~G~EY~FG~h~~~---~sGI~~~~P~~~pg~~~r~sI~LG~T~ls~~e~~~~l~~L~~~f~g~tYhLL~rNC 123 (225)
+||-||-|.+ -+.+|-|.-+ +.|-+.++|-+.+ =+.+..=+-.++.++++..+ .++| -|..+.+||
T Consensus 22 ~yHYaIYi~~-G~~lgvh~p~aai~~a~i~l~~ls~~----WRvvy~P~~~~~~~~L~~l~---ge~~---PY~a~~nNC 90 (358)
T PF08405_consen 22 IYHYAIYIGK-GLVLGVHSPGAAISIATIELEPLSLW----WRVVYTPRQRLSYDQLRKLE---GEKF---PYAAFTNNC 90 (358)
T ss_pred eEEEEEEecC-CeEEeecCcchhceeeeEEEeecccc----cccccCCCCCCCHHHHHHhc---CCCC---Cchhhccch
Confidence 8999998753 4677766432 2345555555443 11222223356666654432 2345 489999999
Q ss_pred chHHHHHHHHhcCCCCChHHHH--hhhhcccc
Q 027332 124 NHFTEEVCMQLTGKCIPGWVNR--MARLGSFC 153 (225)
Q Consensus 124 NHFSd~lc~~L~Gk~IP~wInr--lA~iGs~~ 153 (225)
=||| |+-|.-+. .|++| +.|.|.|+
T Consensus 91 y~fc---c~vl~L~D--~wl~rr~v~r~~~F~ 117 (358)
T PF08405_consen 91 YTFC---CWVLGLND--SWLKRRLVSRTGPFY 117 (358)
T ss_pred HHHh---HhhcCCCh--HHHhhccccccCCCC
Confidence 9999 66543221 36666 33445554
No 10
>cd00224 Mog1 homolog to Ran-Binding Protein Mog1p; binds to the small GTPase Ran, which plays an important role in nuclear import. Binding is independent of Ran's nucleotide state (RanGTP/RanGDP)
Probab=43.80 E-value=12 Score=32.09 Aligned_cols=31 Identities=16% Similarity=0.510 Sum_probs=24.2
Q ss_pred hccccccccCCcc-eecccccCCCCCC-ccCCC
Q 027332 149 LGSFCNCLLPESI-QITAVAHLPDRPT-YSDDD 179 (225)
Q Consensus 149 iGs~~~cllP~~~-~~~~v~~~~~~~~-~~~~~ 179 (225)
.|-++.|.||..+ .++.+|++|+++| |-+.+
T Consensus 4 fGGAI~~~lP~~f~DvS~lRqVPDnQEVF~~~~ 36 (173)
T cd00224 4 FGGAFSAILPPGFIDVSDLRPVPDNQEVFCHPS 36 (173)
T ss_pred cCceEEEeCCCcccchhcceeCCCCcEEEEcCC
Confidence 3566789999766 5899999999999 45544
No 11
>PF04046 PSP: PSP; InterPro: IPR006568 PSP is a proline-rich domain of unknown function found in spliceosome associated proteins.
Probab=34.30 E-value=35 Score=23.77 Aligned_cols=25 Identities=36% Similarity=0.648 Sum_probs=20.2
Q ss_pred HHHHHHHHhc--CCCCChHHHHhhhhc
Q 027332 126 FTEEVCMQLT--GKCIPGWVNRMARLG 150 (225)
Q Consensus 126 FSd~lc~~L~--Gk~IP~wInrlA~iG 150 (225)
.|+++-++|. ...+|.||.++.++|
T Consensus 5 lS~~LR~ALg~~~~~~PPwl~~M~~~G 31 (48)
T PF04046_consen 5 LSDELREALGMQENDPPPWLYRMRRLG 31 (48)
T ss_pred cCHHHHHHcCCCCCCCChHHHHHHhcC
Confidence 3677777775 467999999999998
No 12
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=33.01 E-value=35 Score=27.23 Aligned_cols=44 Identities=20% Similarity=0.344 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhccCCCCCcccccccccchHHHHHHHHhcCCCCChHHHHhh
Q 027332 97 RAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMA 147 (225)
Q Consensus 97 ~~e~~~~l~~L~~~f~g~tYhLL~rNCNHFSd~lc~~L~Gk~IP~wInrlA 147 (225)
+++++..|..+..+|. ---|--|++++.++|..++||+-+-+|-
T Consensus 2 ~~~~~Q~I~~I~~~f~-------~~qC~~cA~Al~~~L~~~gI~Gk~i~l~ 45 (100)
T PF15643_consen 2 PAEVRQQIGKIASRFK-------IFQCVECASALKQFLKQAGIPGKIIRLY 45 (100)
T ss_pred HHHHHHHHHHhhcccC-------ceehHHHHHHHHHHHHHCCCCceEEEEE
Confidence 5678888888888874 2369999999999999999998776654
No 13
>PF13964 Kelch_6: Kelch motif
Probab=29.24 E-value=47 Score=21.57 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=16.6
Q ss_pred eeeeeeEEeCeEEeeccccc
Q 027332 47 IFHSGIEAHGLEYGFGAHEY 66 (225)
Q Consensus 47 I~HTGVeV~G~EY~FG~h~~ 66 (225)
..|+.+.+.|+=|.|||...
T Consensus 3 ~~~s~v~~~~~iyv~GG~~~ 22 (50)
T PF13964_consen 3 YGHSAVVVGGKIYVFGGYDN 22 (50)
T ss_pred ccCEEEEECCEEEEECCCCC
Confidence 36888999999999998643
No 14
>smart00581 PSP proline-rich domain in spliceosome associated proteins.
Probab=29.15 E-value=47 Score=23.72 Aligned_cols=24 Identities=38% Similarity=0.621 Sum_probs=19.8
Q ss_pred HHHHHHHhc--CCCCChHHHHhhhhc
Q 027332 127 TEEVCMQLT--GKCIPGWVNRMARLG 150 (225)
Q Consensus 127 Sd~lc~~L~--Gk~IP~wInrlA~iG 150 (225)
|+++-++|. -..+|-|+.++.++|
T Consensus 10 S~~LR~ALG~~~~~pPPWl~~Mq~~G 35 (54)
T smart00581 10 SDELREALGLPPGQPPPWLYRMRRLG 35 (54)
T ss_pred CHHHHHHcCCCCCCCChHHHHHHHHC
Confidence 677888875 356899999999998
No 15
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=28.25 E-value=22 Score=25.48 Aligned_cols=46 Identities=9% Similarity=0.146 Sum_probs=33.7
Q ss_pred HHHHHHHHHhccCCC-CCcccccccccchHHHHHHHHhcCCCCChHH
Q 027332 98 AEFRSFMEHLSGKYH-GDTYHLIAKNCNHFTEEVCMQLTGKCIPGWV 143 (225)
Q Consensus 98 ~e~~~~l~~L~~~f~-g~tYhLL~rNCNHFSd~lc~~L~Gk~IP~wI 143 (225)
.++...++.+..++. ...+.++.=||+....++|+.+..+.+|.++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~ 80 (105)
T cd02998 34 KNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLK 80 (105)
T ss_pred HhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEE
Confidence 345556666666665 3467888899999767889988888888644
No 16
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=24.81 E-value=68 Score=20.84 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=15.3
Q ss_pred eeeeeEEeCeEEeeccc
Q 027332 48 FHSGIEAHGLEYGFGAH 64 (225)
Q Consensus 48 ~HTGVeV~G~EY~FG~h 64 (225)
-|+.+++.++=|-|||.
T Consensus 4 ~hs~~~~~~kiyv~GG~ 20 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGY 20 (49)
T ss_pred ceEEEEECCEEEEECCc
Confidence 48899999999999986
No 17
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=22.62 E-value=79 Score=30.66 Aligned_cols=46 Identities=22% Similarity=0.445 Sum_probs=37.5
Q ss_pred cccCCHHHHHHHHHHhccCCCCCcccccccccchHH----HHHHHHhcCCC
Q 027332 92 TTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFT----EEVCMQLTGKC 138 (225)
Q Consensus 92 ~T~ls~~e~~~~l~~L~~~f~g~tYhLL~rNCNHFS----d~lc~~L~Gk~ 138 (225)
+..++.+++++..+++. .-..+.-|++.=-|+||| .++++.|-||+
T Consensus 267 ~i~i~~~dl~~~~~~l~-~~~~~~~D~V~lGcPH~S~~El~~ia~ll~gr~ 316 (400)
T PF04412_consen 267 RITITDADLEEVYEELN-TAGDEKVDLVALGCPHLSLEELREIAELLEGRK 316 (400)
T ss_pred EEEeCHHHHHHHHHHhc-cCCCCCCCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34678899999999997 667778899999999999 45777777765
No 18
>PF04894 DUF650: Archaeal protein of unknown function (DUF650); InterPro: IPR006978 This conserved region is found in the N-terminal region of a number of conserved archaeal proteins of unknown function.
Probab=22.33 E-value=73 Score=29.50 Aligned_cols=42 Identities=29% Similarity=0.365 Sum_probs=35.6
Q ss_pred HHHHHHHhcCCCCC-hHHHHhhhhcccc----ccccCCcceeccccc
Q 027332 127 TEEVCMQLTGKCIP-GWVNRMARLGSFC----NCLLPESIQITAVAH 168 (225)
Q Consensus 127 Sd~lc~~L~Gk~IP-~wInrlA~iGs~~----~cllP~~~~~~~v~~ 168 (225)
+.+.+..|-.++|+ .+|.|+=.+|.+. +.|+|..|-+|||.+
T Consensus 172 A~eAv~~LY~~g~dv~~I~r~lS~G~LG~~~~RkLVPTRWSITAVDd 218 (273)
T PF04894_consen 172 AEEAVIELYRSGIDVYYIQRALSAGLLGRKKKRKLVPTRWSITAVDD 218 (273)
T ss_pred HHHHHHHHHHcCCCHHHHHHHhcCccCCCCCccccCCCCceehhHHH
Confidence 46777788888999 5889999999887 799999999999854
No 19
>PF11022 DUF2611: Protein of unknown function (DUF2611); InterPro: IPR021278 This family is conserved in the Dikarya of Fungi. The function is not known.
Probab=21.82 E-value=35 Score=25.57 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=22.9
Q ss_pred hcCCCCChHHHHhhhhccccccccCCcc
Q 027332 134 LTGKCIPGWVNRMARLGSFCNCLLPESI 161 (225)
Q Consensus 134 L~Gk~IP~wInrlA~iGs~~~cllP~~~ 161 (225)
+.||.||.++.-++.+|+.+-...+-..
T Consensus 7 I~Gr~V~~H~LAi~tLg~~~~~~~~~~~ 34 (71)
T PF11022_consen 7 IFGRQVQSHYLAIATLGTVFGGVYLATS 34 (71)
T ss_pred ecccccccchhHHHHHHHHHHHheeccC
Confidence 4599999999999999998876666444
No 20
>PF01288 HPPK: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); InterPro: IPR000550 All organisms require reduced folate cofactors for the synthesis of a variety of metabolites. Most microorganisms must synthesise folate de novo because they lack the active transport system of higher vertebrate cells which allows these organisms to use dietary folates. Enzymes involved in folate biosynthesis are therefore targets for a variety of antimicrobial agents such as trimethoprim or sulphonamides. 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (2.7.6.3 from EC) (HPPK) catalyses the attachment of pyrophosphate to 6-hydroxymethyl-7,8-dihydropterin to form 6-hydroxymethyl-7,8-dihydropteridine pyrophosphate. This is the first step in a three-step pathway leading to 7,8 dihydrofolate. Bacterial HPPK (gene folK or sulD) [] is a protein of 160 to 270 amino acids. In the lower eukaryote Pneumocystis carinii, HPPK is the central domain of a multifunctional folate synthesis enzyme (gene fas) [].; GO: 0003848 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity, 0009396 folic acid-containing compound biosynthetic process; PDB: 2QX0_B 1RU1_B 2F65_A 1RU2_A 1EQ0_A 3ILJ_A 3HSJ_A 3HD1_A 1TMM_B 1RB0_A ....
Probab=21.55 E-value=1.2e+02 Score=24.27 Aligned_cols=42 Identities=24% Similarity=0.400 Sum_probs=29.7
Q ss_pred CCeEeeCCCCCCCC-ceEEEEEeccccCCHHHHHHHHHHhccC
Q 027332 69 SGVFEVEPKSCPGF-IFRRSVLLGTTNLSRAEFRSFMEHLSGK 110 (225)
Q Consensus 69 sGI~~~~P~~~pg~-~~r~sI~LG~T~ls~~e~~~~l~~L~~~ 110 (225)
|-+++++|-...+. .|--.+..+.|.+++.++...+.++..+
T Consensus 34 S~~y~t~p~g~~~~~~F~N~v~~~~t~l~~~~ll~~L~~IE~~ 76 (127)
T PF01288_consen 34 SSIYETEPVGFESQPDFLNAVVVLETSLSPEELLDLLKQIERR 76 (127)
T ss_dssp EEEEEE--SSSSSS-CEEEEEEEEEESS-HHHHHHHHHHHHHH
T ss_pred CCCEEECCccCCCCcCeeeeeeeecCCCCHHHHHHHHHHHHHH
Confidence 46777777654443 4888899999999999999999877543
No 21
>KOG3150 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.26 E-value=1.8e+02 Score=25.40 Aligned_cols=54 Identities=13% Similarity=0.228 Sum_probs=38.8
Q ss_pred eEEEEEeccccC---CHHHHHHHHHHhccCCCCCcccccccccchHHHHHHHHhcCC
Q 027332 84 FRRSVLLGTTNL---SRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGK 137 (225)
Q Consensus 84 ~r~sI~LG~T~l---s~~e~~~~l~~L~~~f~g~tYhLL~rNCNHFSd~lc~~L~Gk 137 (225)
+-+-+.|+.+.. ......+.+++-+++|...+|||+--||..|-.-...+|.=+
T Consensus 76 paRY~ql~p~~~~~~g~~~wD~Av~~as~~y~hr~hNi~cdNCHShVA~aLn~mry~ 132 (182)
T KOG3150|consen 76 PARYIQLDPEKVCGPGARTWDNAVSKASREYKHRTHNIFCDNCHSHVANALNRMRYG 132 (182)
T ss_pred cceeEEeChhheeCCCCchHHHHHHHHHHHhhhcccceeeccHHHHHHHHHHHhhcC
Confidence 334444444432 345677888888899999999999999999987766666433
No 22
>KOG2636 consensus Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=21.03 E-value=49 Score=32.94 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=22.3
Q ss_pred CCCCChHHHHhhhhccccccccCCcc
Q 027332 136 GKCIPGWVNRMARLGSFCNCLLPESI 161 (225)
Q Consensus 136 Gk~IP~wInrlA~iGs~~~cllP~~~ 161 (225)
|||||-|+-+|--++--++|=+....
T Consensus 385 GkPiPyWLyKLHGL~~ey~CEICGNy 410 (497)
T KOG2636|consen 385 GKPIPYWLYKLHGLDIEYNCEICGNY 410 (497)
T ss_pred CCcCchHHHhhcCCCcccceeeccCc
Confidence 89999999999999888888777643
No 23
>PF04603 Mog1: Ran-interacting Mog1 protein; InterPro: IPR007681 Segregation of nuclear and cytoplasmic processes facilitates regulation of many eukaryotic cellular functions such as gene expression and cell cycle progression. Trafficking through the nuclear pore requires a number of highly conserved soluble factors that escort macromolecular substrates into and out of the nucleus. The Mog1 protein has been shown to interact with RanGTP, which stimulates guanine nucleotide release, suggesting Mog1 regulates the nuclear transport functions of Ran []. The human homologue of Mog1 is thought to be alternatively spliced.; PDB: 1JHS_A 1EQ6_A.
Probab=20.71 E-value=40 Score=28.07 Aligned_cols=31 Identities=23% Similarity=0.453 Sum_probs=19.3
Q ss_pred hccccccccCCcc-eecccccCCCCCCccCCC
Q 027332 149 LGSFCNCLLPESI-QITAVAHLPDRPTYSDDD 179 (225)
Q Consensus 149 iGs~~~cllP~~~-~~~~v~~~~~~~~~~~~~ 179 (225)
.|-.+.|.||..+ .++.+|++|..+|..=+.
T Consensus 5 yGGAi~~~lP~~f~DvS~~RqVPD~QEVf~~~ 36 (141)
T PF04603_consen 5 YGGAITCDLPSGFIDVSDFRQVPDNQEVFVDP 36 (141)
T ss_dssp GGGTEEEEE-TTEEEGGGTS---TTEEEEEE-
T ss_pred cCceEEEeCCCCccchhhceeCCCCCEEeEeC
Confidence 3556789999764 589999999999874433
Done!