Query 027332
Match_columns 225
No_of_seqs 168 out of 460
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 13:40:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027332.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027332hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wp7_A PPPDE peptidase domain- 100.0 8.7E-51 3E-55 341.9 11.9 132 23-159 6-150 (168)
2 2lkt_A Retinoic acid receptor 91.5 0.064 2.2E-06 41.4 1.6 32 95-129 87-119 (125)
3 4dot_A Group XVI phospholipase 91.2 0.083 2.8E-06 42.8 2.0 17 114-130 104-120 (140)
4 4dpz_X HRAS-like suppressor 2; 90.0 0.16 5.5E-06 40.9 2.6 17 114-130 104-120 (137)
5 2d8m_A DNA-repair protein XRCC 33.0 68 0.0023 24.2 5.0 59 88-150 29-96 (129)
6 1eq6_A MOG1P; alpha-beta, prot 29.5 17 0.00057 30.4 1.0 28 149-176 10-38 (189)
7 1rpq_W Peptide E131; receptor- 22.5 21 0.00071 20.8 0.2 11 122-132 2-12 (26)
8 1fme_A FSD-EY peptide; beta-BE 20.9 70 0.0024 18.8 2.3 21 89-109 7-27 (28)
9 2wj8_A Nucleoprotein; RNA bind 17.8 76 0.0026 29.1 3.0 35 98-134 285-328 (391)
10 2nz0_B Potassium voltage-gated 15.9 1.1E+02 0.0036 24.1 3.1 28 3-30 14-41 (140)
No 1
>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A
Probab=100.00 E-value=8.7e-51 Score=341.87 Aligned_cols=132 Identities=30% Similarity=0.482 Sum_probs=123.9
Q ss_pred cceEEEEEeeCCCcc-hhh--hhccc---ceeeeeeEEeCeEEeecccccCCCCeEeeCCCCCCCCceEEEEEeccccCC
Q 027332 23 HALLYLNVYDLTPLN-NYL--YWFGL---GIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPGFIFRRSVLLGTTNLS 96 (225)
Q Consensus 23 ~~~V~LnVYDLs~~n-~~l--~~lG~---GI~HTGVeV~G~EY~FG~h~~~~sGI~~~~P~~~pg~~~r~sI~LG~T~ls 96 (225)
+++|+||||||++++ +++ .|+|. |||||||||||+||+||+ +||++++|+.+|.++||++|.||+|.++
T Consensus 6 ~~~V~LnVYDLs~g~a~~~s~~~lG~~i~Gi~HtgV~V~G~EY~FG~-----~GI~~~~Pg~~~~g~~resi~lG~T~~~ 80 (168)
T 2wp7_A 6 LYPVKLYVYDLSKGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGS-----SGISSCTPGGTLLGPPDSVVDVGNTEVT 80 (168)
T ss_dssp CEEEEEEEEETTTTHHHHHHHHHTSSCCCCCEEEEEEETTEEEEEET-----TEEEEESTTCSTTCSCSEEEEEEEECCC
T ss_pred CcEEEEEEEECChHHHHHhhHHHhCCCcCcEEEEEEEECCEEEEEcC-----CCeEecCCCcCCCCCeEEEEECCCccCC
Confidence 489999999999974 443 48997 999999999999999996 5999999999999999999999999999
Q ss_pred HHHHHHHHHHhccC-CCCCcccccccccchHHHHHHHHhcCCCCChHHHHhhh------hccccccccCC
Q 027332 97 RAEFRSFMEHLSGK-YHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMAR------LGSFCNCLLPE 159 (225)
Q Consensus 97 ~~e~~~~l~~L~~~-f~g~tYhLL~rNCNHFSd~lc~~L~Gk~IP~wInrlA~------iGs~~~cllP~ 159 (225)
+++|++||++|+++ |++++||||+|||||||+++|++|+||+||+||||||+ +|.++.|+|+.
T Consensus 81 ~~~~~~~l~~l~~~~~~g~~Y~Ll~~NCNhFs~~l~~~L~gk~IP~wInrl~~~vl~tp~G~~l~~~l~~ 150 (168)
T 2wp7_A 81 EEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDLPSEVLSTPFGQALRPFLDS 150 (168)
T ss_dssp HHHHHHHHHHHHTTTCSGGGCBTTTBSHHHHHHHHHHHHHSCCCCHHHHTHHHHHHTSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhccCCcccCchhhhccchhHHHHHHHhcCCCCcHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 99999999999998 99999999999999999999999999999999999999 68889999854
No 2
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=91.55 E-value=0.064 Score=41.43 Aligned_cols=32 Identities=25% Similarity=0.504 Sum_probs=20.7
Q ss_pred CCHHHH-HHHHHHhccCCCCCcccccccccchHHHH
Q 027332 95 LSRAEF-RSFMEHLSGKYHGDTYHLIAKNCNHFTEE 129 (225)
Q Consensus 95 ls~~e~-~~~l~~L~~~f~g~tYhLL~rNCNHFSd~ 129 (225)
++.+++ ++....|..++ .|||+.+||=||+..
T Consensus 87 ~~~~~iv~rA~~~lg~~~---~Y~l~~nNCEHFa~~ 119 (125)
T 2lkt_A 87 RPVEVIISSAKEMVGQKM---KYSIVSRNCEHFVTQ 119 (125)
T ss_dssp CCHHHHHHHHHHHTTCEE---CSSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCC---CcCCCccCHHHHHhh
Confidence 444444 33333444433 699999999999865
No 3
>4dot_A Group XVI phospholipase A2; alpha/beta fold, phospholipase/acyltransferase, phosphatidyl phosphatidylethanolamine, membrane, hydrolase; 1.96A {Homo sapiens}
Probab=91.23 E-value=0.083 Score=42.77 Aligned_cols=17 Identities=41% Similarity=0.890 Sum_probs=15.4
Q ss_pred CcccccccccchHHHHH
Q 027332 114 DTYHLIAKNCNHFTEEV 130 (225)
Q Consensus 114 ~tYhLL~rNCNHFSd~l 130 (225)
..|+|+.+||-||+..+
T Consensus 104 ~~Y~ll~nNCEHFvt~c 120 (140)
T 4dot_A 104 VLYKLTSENCEHFVNEL 120 (140)
T ss_dssp CSSCCCHHHHHHHHHHH
T ss_pred ccccccccChHHHHHHH
Confidence 69999999999999873
No 4
>4dpz_X HRAS-like suppressor 2; alpha/beta fold, enzyme phospholipid acyltransferase, hydrol transferase; 1.25A {Homo sapiens} PDB: 4fa0_A 2kyt_A
Probab=89.97 E-value=0.16 Score=40.91 Aligned_cols=17 Identities=35% Similarity=0.804 Sum_probs=10.3
Q ss_pred CcccccccccchHHHHH
Q 027332 114 DTYHLIAKNCNHFTEEV 130 (225)
Q Consensus 114 ~tYhLL~rNCNHFSd~l 130 (225)
..|+|+.+||-||+..+
T Consensus 104 ~~Y~ll~nNCEHFvt~c 120 (137)
T 4dpz_X 104 LPYSLTSDNCEHFVNHL 120 (137)
T ss_dssp EC-----CHHHHHHHHH
T ss_pred cccCcCccChHHHHHHH
Confidence 48999999999999874
No 5
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.02 E-value=68 Score=24.19 Aligned_cols=59 Identities=32% Similarity=0.441 Sum_probs=34.2
Q ss_pred EEeccccCCHHHHHHHHHHhccCCCCCcccccccccchH------HHHHHHHh-cCCCC--ChHHHHhhhhc
Q 027332 88 VLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHF------TEEVCMQL-TGKCI--PGWVNRMARLG 150 (225)
Q Consensus 88 I~LG~T~ls~~e~~~~l~~L~~~f~g~tYhLL~rNCNHF------Sd~lc~~L-~Gk~I--P~wInrlA~iG 150 (225)
..-|.+..++.++..+|..+...|... +.++|.|. +..+.+++ .|-+| |.||....+-+
T Consensus 29 ~itG~~~~~r~~l~~~i~~~Gg~v~~~----~s~~~ThLI~~~~~~~K~~~A~~~gi~IV~~~Wl~d~~~~~ 96 (129)
T 2d8m_A 29 VLSGFQNPFRSELRDKALELGAKYRPD----WTRDSTHLICAFANTPKYSQVLGLGGRIVRKEWVLDCHRMR 96 (129)
T ss_dssp EEESCCTTHHHHHHHHHHHTTEEEESS----CCTTCCEEEESSSSCHHHHHHHHHTCEEEETHHHHHHHHTT
T ss_pred EEeCCCcHHHHHHHHHHHHcCCEEeCC----cCCCCeEEEecCCCChHHHHHHHCCCcEecHHHHHHHHHhC
Confidence 345777778999999999997665432 23445543 12222222 23333 57777666554
No 6
>1eq6_A MOG1P; alpha-beta, protein transport; 1.90A {Saccharomyces cerevisiae} SCOP: d.107.1.1 PDB: 1jhs_A
Probab=29.50 E-value=17 Score=30.42 Aligned_cols=28 Identities=14% Similarity=0.360 Sum_probs=22.8
Q ss_pred hccccccccCCcc-eecccccCCCCCCcc
Q 027332 149 LGSFCNCLLPESI-QITAVAHLPDRPTYS 176 (225)
Q Consensus 149 iGs~~~cllP~~~-~~~~v~~~~~~~~~~ 176 (225)
.|-++.|.||..+ .++.+|++|+++|..
T Consensus 10 fGGAI~~~lP~~f~DvS~lRqVPDnQEVF 38 (189)
T 1eq6_A 10 YGGAITTVVPPGFIDASTLREVPDTQEVY 38 (189)
T ss_dssp GGGTEEEEECTTEEEGGGTSCCCTTEEEE
T ss_pred cCceEEeeCCCCccchhhcccCCCCcEEE
Confidence 4666789999864 589999999998863
No 7
>1rpq_W Peptide E131; receptor-peptide complex, membrane protein; HET: NAG BMA NDG CIT; 3.00A {Homo sapiens} PDB: 1kco_A
Probab=22.52 E-value=21 Score=20.78 Aligned_cols=11 Identities=36% Similarity=0.700 Sum_probs=8.1
Q ss_pred ccchHHHHHHH
Q 027332 122 NCNHFTEEVCM 132 (225)
Q Consensus 122 NCNHFSd~lc~ 132 (225)
.|.||+-++-.
T Consensus 2 qcphfcyeldy 12 (26)
T 1rpq_W 2 QCPHFCYELDY 12 (26)
T ss_dssp CCCTHHHHSSS
T ss_pred CCCeeeeecCc
Confidence 59999987543
No 8
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=20.93 E-value=70 Score=18.81 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=16.9
Q ss_pred EeccccCCHHHHHHHHHHhcc
Q 027332 89 LLGTTNLSRAEFRSFMEHLSG 109 (225)
Q Consensus 89 ~LG~T~ls~~e~~~~l~~L~~ 109 (225)
+-|.|-..+.|++.||+..+.
T Consensus 7 ykgrtfrnekelrdfiekfkg 27 (28)
T 1fme_A 7 YKGRTFRNEKELRDFIEKFKG 27 (28)
T ss_dssp SSSCEECCHHHHHHHHHHCCC
T ss_pred hcccccccHHHHHHHHHHhcC
Confidence 347788889999999998653
No 9
>2wj8_A Nucleoprotein; RNA binding protein RNA complex, nucleocapsid (N), ribonucleoprotein, respiratory syncytial virus (RSV); 3.29A {Human respiratory syncytial virus astrain long} PDB: 2yhm_A 2yhp_A 2yhq_A
Probab=17.84 E-value=76 Score=29.13 Aligned_cols=35 Identities=23% Similarity=0.462 Sum_probs=22.5
Q ss_pred HHHHHHHHHhccCCCCCcccccc---------cccchHHHHHHHHh
Q 027332 98 AEFRSFMEHLSGKYHGDTYHLIA---------KNCNHFTEEVCMQL 134 (225)
Q Consensus 98 ~e~~~~l~~L~~~f~g~tYhLL~---------rNCNHFSd~lc~~L 134 (225)
.|+.+++++|..+ ..-|||.. -||+||+.-+.---
T Consensus 285 ~evy~~~~k~G~E--sG~~Hlr~nPKA~LLSLtncPnFaSVVLGNA 328 (391)
T 2wj8_A 285 VEVYEYAQKLGGE--AGFYHILNNPKASLLSLTQFPHFSSVVLGNA 328 (391)
T ss_dssp HHHHHHHHHHGGG--GGGTTTTTCGGGGGGCSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcc--chhhhhhhCCcchheecccCCCchhheeccc
Confidence 3566677777653 33456554 59999998765543
No 10
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=15.94 E-value=1.1e+02 Score=24.11 Aligned_cols=28 Identities=14% Similarity=0.194 Sum_probs=16.2
Q ss_pred cccCCCCccchhhhccCCCCcceEEEEE
Q 027332 3 FFSSSSSFSLTKEQNSRGSNHALLYLNV 30 (225)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~V~LnV 30 (225)
|.|++++.-.+...+........|.|||
T Consensus 14 ~~p~~~~~~~~~~~~~~~~~~~~V~LNV 41 (140)
T 2nz0_B 14 WMPVANCPMPLAPADKNKRQDELIVLNV 41 (140)
T ss_dssp TSSSSCCSSCSSCGGGCTTCCCEEEEEE
T ss_pred ccccccCCCCCCcccccCCCCCEEEEEE
Confidence 5677554433322333444568899997
Done!