Query 027333
Match_columns 225
No_of_seqs 143 out of 1252
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 08:23:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027333.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027333hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0406 Glutathione S-transfer 100.0 4.7E-42 1E-46 258.5 23.2 214 4-217 9-226 (231)
2 PRK09481 sspA stringent starva 100.0 6.6E-40 1.4E-44 252.1 21.5 196 4-205 10-205 (211)
3 PLN02473 glutathione S-transfe 100.0 2.4E-36 5.3E-41 232.9 19.0 193 5-202 3-211 (214)
4 PRK15113 glutathione S-transfe 100.0 1.4E-35 3E-40 228.5 18.1 194 1-205 1-211 (214)
5 PLN02395 glutathione S-transfe 100.0 2.6E-35 5.7E-40 227.3 18.1 194 1-202 1-210 (215)
6 PRK13972 GSH-dependent disulfi 100.0 2.1E-35 4.7E-40 227.7 16.5 188 5-203 2-206 (215)
7 PRK10542 glutathionine S-trans 100.0 2.4E-35 5.3E-40 225.2 16.2 189 5-202 1-197 (201)
8 PRK10357 putative glutathione 100.0 1.7E-34 3.6E-39 220.7 20.0 192 5-202 1-200 (202)
9 TIGR01262 maiA maleylacetoacet 100.0 1E-34 2.3E-39 223.1 18.6 190 6-203 1-205 (210)
10 COG0625 Gst Glutathione S-tran 100.0 2.4E-34 5.3E-39 221.2 19.1 185 5-197 1-199 (211)
11 TIGR00862 O-ClC intracellular 100.0 2.2E-33 4.8E-38 216.7 21.2 193 11-214 17-232 (236)
12 PRK11752 putative S-transferas 100.0 1.6E-33 3.6E-38 222.9 19.4 196 4-203 44-259 (264)
13 KOG0868 Glutathione S-transfer 100.0 1.3E-33 2.8E-38 200.5 14.3 193 3-203 4-208 (217)
14 PLN02378 glutathione S-transfe 100.0 3.9E-32 8.4E-37 209.1 20.4 187 10-209 17-206 (213)
15 PLN02817 glutathione dehydroge 100.0 1.2E-31 2.6E-36 211.3 21.5 188 11-211 71-260 (265)
16 PTZ00057 glutathione s-transfe 100.0 3.7E-32 8E-37 208.1 17.4 191 1-204 1-201 (205)
17 KOG0867 Glutathione S-transfer 100.0 9.2E-32 2E-36 207.9 17.8 197 4-205 2-212 (226)
18 PRK10387 glutaredoxin 2; Provi 100.0 5.7E-31 1.2E-35 202.4 14.5 179 5-197 1-208 (210)
19 TIGR02182 GRXB Glutaredoxin, G 100.0 6.4E-29 1.4E-33 190.6 14.8 177 6-197 1-207 (209)
20 KOG1695 Glutathione S-transfer 100.0 1.2E-28 2.7E-33 184.7 15.9 194 1-204 1-202 (206)
21 KOG4420 Uncharacterized conser 99.9 9E-27 1.9E-31 175.0 12.9 202 4-210 26-295 (325)
22 PLN02907 glutamate-tRNA ligase 99.9 4E-24 8.6E-29 187.7 16.2 158 1-195 1-159 (722)
23 KOG1422 Intracellular Cl- chan 99.9 2.3E-22 5.1E-27 147.2 16.6 194 11-213 19-216 (221)
24 PF13417 GST_N_3: Glutathione 99.8 1.2E-20 2.6E-25 121.1 8.2 74 7-81 1-74 (75)
25 KOG4244 Failed axon connection 99.8 1.8E-19 3.9E-24 136.7 13.3 178 5-193 46-273 (281)
26 cd03059 GST_N_SspA GST_N famil 99.8 1.3E-19 2.9E-24 115.7 8.8 73 5-78 1-73 (73)
27 cd03061 GST_N_CLIC GST_N famil 99.8 1E-19 2.2E-24 119.3 8.3 70 11-81 20-89 (91)
28 KOG3029 Glutathione S-transfer 99.8 4E-19 8.6E-24 135.5 12.6 182 4-193 90-355 (370)
29 cd03058 GST_N_Tau GST_N family 99.8 2.4E-19 5.2E-24 114.8 8.5 74 5-78 1-74 (74)
30 cd03052 GST_N_GDAP1 GST_N fami 99.8 2.1E-19 4.5E-24 114.5 8.0 70 5-75 1-73 (73)
31 cd03185 GST_C_Tau GST_C family 99.8 2.5E-18 5.4E-23 121.5 12.6 124 89-212 2-125 (126)
32 cd03041 GST_N_2GST_N GST_N fam 99.8 6.4E-19 1.4E-23 113.6 8.0 73 5-78 2-77 (77)
33 cd03076 GST_N_Pi GST_N family, 99.8 4.5E-19 9.8E-24 113.1 6.8 73 4-77 1-73 (73)
34 cd03060 GST_N_Omega_like GST_N 99.8 1.2E-18 2.7E-23 110.5 8.0 69 5-74 1-70 (71)
35 cd03045 GST_N_Delta_Epsilon GS 99.8 1.3E-18 2.9E-23 111.3 8.1 71 5-76 1-74 (74)
36 cd03053 GST_N_Phi GST_N family 99.8 2E-18 4.4E-23 111.1 8.6 72 5-77 2-76 (76)
37 cd03050 GST_N_Theta GST_N fami 99.8 3.7E-18 8.1E-23 109.8 8.7 73 5-78 1-76 (76)
38 cd03048 GST_N_Ure2p_like GST_N 99.7 8.1E-18 1.7E-22 109.6 8.8 73 5-79 2-80 (81)
39 cd03056 GST_N_4 GST_N family, 99.7 6.2E-18 1.3E-22 107.9 7.9 70 5-75 1-73 (73)
40 cd03049 GST_N_3 GST_N family, 99.7 7.5E-18 1.6E-22 107.5 7.6 70 5-75 1-73 (73)
41 cd03039 GST_N_Sigma_like GST_N 99.7 4.8E-18 1E-22 108.1 6.6 71 5-76 1-72 (72)
42 cd03047 GST_N_2 GST_N family, 99.7 9.7E-18 2.1E-22 107.0 7.9 70 5-75 1-73 (73)
43 cd03044 GST_N_EF1Bgamma GST_N 99.7 1.1E-17 2.3E-22 107.3 8.0 70 6-76 2-74 (75)
44 cd03055 GST_N_Omega GST_N fami 99.7 1.3E-17 2.7E-22 110.6 8.5 71 4-75 18-89 (89)
45 cd03037 GST_N_GRX2 GST_N famil 99.7 8.6E-18 1.9E-22 106.7 7.4 70 5-76 1-71 (71)
46 cd03046 GST_N_GTT1_like GST_N 99.7 2E-17 4.3E-22 106.4 8.4 73 5-79 1-76 (76)
47 cd03051 GST_N_GTT2_like GST_N 99.7 1.3E-17 2.8E-22 106.6 7.4 70 5-75 1-74 (74)
48 cd03057 GST_N_Beta GST_N famil 99.7 2.8E-17 6.1E-22 106.0 8.2 73 5-79 1-77 (77)
49 cd03190 GST_C_ECM4_like GST_C 99.7 7.8E-17 1.7E-21 116.1 10.9 127 89-215 3-131 (142)
50 cd03042 GST_N_Zeta GST_N famil 99.7 3.4E-17 7.5E-22 104.4 7.9 70 5-75 1-73 (73)
51 cd03184 GST_C_Omega GST_C fami 99.7 1.1E-16 2.4E-21 112.7 11.0 120 90-212 2-123 (124)
52 cd03186 GST_C_SspA GST_N famil 99.7 1.2E-16 2.5E-21 109.7 10.3 105 89-199 2-106 (107)
53 cd03040 GST_N_mPGES2 GST_N fam 99.7 3.9E-17 8.5E-22 105.3 7.5 72 4-78 1-76 (77)
54 COG2999 GrxB Glutaredoxin 2 [P 99.7 2.2E-16 4.8E-21 112.8 11.7 179 5-197 1-208 (215)
55 cd03196 GST_C_5 GST_C family, 99.7 2.3E-16 5.1E-21 109.5 11.1 110 87-200 3-115 (115)
56 cd03075 GST_N_Mu GST_N family, 99.7 7.9E-17 1.7E-21 104.9 7.6 73 5-78 1-82 (82)
57 cd03077 GST_N_Alpha GST_N fami 99.7 1.1E-16 2.5E-21 103.5 8.1 72 4-79 1-77 (79)
58 cd03080 GST_N_Metaxin_like GST 99.7 1.3E-16 2.8E-21 102.3 8.3 67 5-79 2-75 (75)
59 PF13409 GST_N_2: Glutathione 99.7 8.8E-17 1.9E-21 101.5 7.2 65 12-77 1-70 (70)
60 PF02798 GST_N: Glutathione S- 99.7 3.3E-16 7.1E-21 100.6 7.6 71 6-76 2-76 (76)
61 cd03038 GST_N_etherase_LigE GS 99.7 3E-16 6.5E-21 102.9 7.5 67 11-79 14-84 (84)
62 cd03188 GST_C_Beta GST_C famil 99.7 7E-16 1.5E-20 106.9 8.8 104 90-200 2-114 (114)
63 COG0435 ECM4 Predicted glutath 99.7 3.3E-16 7.1E-21 119.5 7.6 211 4-217 51-300 (324)
64 cd03043 GST_N_1 GST_N family, 99.6 1E-15 2.3E-20 97.5 8.4 67 8-75 5-73 (73)
65 cd00570 GST_N_family Glutathio 99.6 1.8E-15 3.8E-20 95.3 7.9 70 5-75 1-71 (71)
66 KOG2903 Predicted glutathione 99.6 1E-15 2.2E-20 115.8 7.3 212 4-219 37-304 (319)
67 cd03054 GST_N_Metaxin GST_N fa 99.6 4.6E-15 1E-19 94.3 7.6 64 6-77 2-72 (72)
68 cd03189 GST_C_GTT1_like GST_C 99.6 1.3E-14 2.9E-19 101.3 10.5 103 85-194 2-119 (119)
69 cd03198 GST_C_CLIC GST_C famil 99.6 2.4E-14 5.3E-19 100.9 11.1 109 101-211 7-133 (134)
70 cd03182 GST_C_GTT2_like GST_C 99.6 2.1E-14 4.6E-19 99.9 10.7 104 87-196 1-117 (117)
71 cd03177 GST_C_Delta_Epsilon GS 99.6 1.2E-14 2.7E-19 101.4 9.3 105 90-200 2-110 (118)
72 cd03201 GST_C_DHAR GST_C famil 99.6 2.9E-14 6.3E-19 99.8 10.9 107 102-211 11-119 (121)
73 cd03178 GST_C_Ure2p_like GST_C 99.6 6.7E-15 1.5E-19 101.9 7.6 104 91-200 2-112 (113)
74 cd03187 GST_C_Phi GST_C family 99.6 1.4E-14 2.9E-19 101.0 8.8 106 90-200 2-118 (118)
75 cd03191 GST_C_Zeta GST_C famil 99.6 1E-14 2.2E-19 102.2 8.2 107 89-202 2-119 (121)
76 cd03181 GST_C_EFB1gamma GST_C 99.6 2E-14 4.4E-19 100.9 9.3 110 91-204 2-118 (123)
77 cd03203 GST_C_Lambda GST_C fam 99.6 3.1E-14 6.7E-19 99.6 9.9 114 87-210 1-119 (120)
78 cd03209 GST_C_Mu GST_C family, 99.6 3.4E-14 7.4E-19 99.6 9.3 108 90-204 2-111 (121)
79 cd03210 GST_C_Pi GST_C family, 99.5 3.3E-14 7.1E-19 100.4 8.9 108 90-204 3-114 (126)
80 cd03180 GST_C_2 GST_C family, 99.5 5.8E-14 1.3E-18 96.6 9.9 100 90-196 2-110 (110)
81 cd03208 GST_C_Alpha GST_C fami 99.5 1.2E-13 2.5E-18 98.9 9.2 109 90-204 3-117 (137)
82 cd03183 GST_C_Theta GST_C fami 99.5 8.9E-14 1.9E-18 98.1 8.3 104 91-200 2-120 (126)
83 cd03200 GST_C_JTV1 GST_C famil 99.5 9.1E-14 2E-18 93.2 7.8 95 71-192 1-95 (96)
84 cd03207 GST_C_8 GST_C family, 99.5 6.3E-14 1.4E-18 95.4 6.7 99 96-202 3-102 (103)
85 cd03206 GST_C_7 GST_C family, 99.5 1.9E-13 4.2E-18 92.5 7.5 95 95-196 2-100 (100)
86 PF00043 GST_C: Glutathione S- 99.5 2.6E-13 5.6E-18 90.9 7.3 72 118-194 24-95 (95)
87 cd03195 GST_C_4 GST_C family, 99.4 6.8E-13 1.5E-17 92.0 8.4 103 89-201 2-112 (114)
88 PF13410 GST_C_2: Glutathione 99.4 6.6E-13 1.4E-17 83.5 6.8 68 118-189 2-69 (69)
89 KOG3027 Mitochondrial outer me 99.4 1.2E-11 2.7E-16 90.7 13.3 170 14-193 35-248 (257)
90 cd03179 GST_C_1 GST_C family, 99.4 1.1E-12 2.3E-17 89.4 6.6 95 90-191 2-105 (105)
91 cd03204 GST_C_GDAP1 GST_C fami 99.4 3.5E-12 7.5E-17 87.3 7.6 75 118-196 25-111 (111)
92 cd03079 GST_N_Metaxin2 GST_N f 99.3 6.8E-12 1.5E-16 79.1 7.1 59 12-77 16-74 (74)
93 PF14497 GST_C_3: Glutathione 99.3 2.9E-12 6.3E-17 86.5 4.7 95 88-192 3-99 (99)
94 KOG3028 Translocase of outer m 99.3 2.8E-10 6E-15 89.2 15.9 172 12-192 16-233 (313)
95 TIGR02190 GlrX-dom Glutaredoxi 99.3 1.6E-11 3.4E-16 79.3 7.4 72 3-75 8-79 (79)
96 cd03192 GST_C_Sigma_like GST_C 99.3 1.7E-11 3.7E-16 83.4 7.7 96 90-190 2-104 (104)
97 PRK10638 glutaredoxin 3; Provi 99.3 3.4E-11 7.3E-16 78.5 7.7 73 1-75 1-74 (83)
98 cd00299 GST_C_family Glutathio 99.3 1.4E-11 3E-16 82.8 6.0 92 95-190 2-100 (100)
99 cd03194 GST_C_3 GST_C family, 99.2 5E-11 1.1E-15 82.6 8.3 72 120-201 39-113 (114)
100 cd03193 GST_C_Metaxin GST_C fa 99.2 2.7E-11 5.8E-16 79.9 6.1 68 122-191 19-88 (88)
101 cd03202 GST_C_etherase_LigE GS 99.2 1.2E-10 2.5E-15 82.0 7.5 69 120-193 56-124 (124)
102 cd03029 GRX_hybridPRX5 Glutare 99.1 3E-10 6.4E-15 72.0 7.9 72 3-75 1-72 (72)
103 cd03078 GST_N_Metaxin1_like GS 99.1 9.7E-10 2.1E-14 69.6 7.7 58 12-77 15-72 (73)
104 cd03205 GST_C_6 GST_C family, 99.0 3.4E-09 7.5E-14 71.3 8.0 67 117-190 32-98 (98)
105 cd03211 GST_C_Metaxin2 GST_C f 99.0 8.7E-10 1.9E-14 77.6 4.9 74 117-191 52-126 (126)
106 cd03212 GST_C_Metaxin1_3 GST_C 98.9 4.2E-09 9.1E-14 75.2 7.0 74 118-192 60-134 (137)
107 cd03027 GRX_DEP Glutaredoxin ( 98.9 6.2E-09 1.3E-13 66.1 6.6 68 4-72 2-70 (73)
108 cd03197 GST_C_mPGES2 GST_C fam 98.9 1.1E-08 2.5E-13 72.9 8.0 67 121-192 78-145 (149)
109 PRK10329 glutaredoxin-like pro 98.9 8.5E-09 1.9E-13 66.6 6.3 62 4-66 2-63 (81)
110 TIGR02196 GlrX_YruB Glutaredox 98.9 1E-08 2.3E-13 64.8 6.7 69 5-74 2-73 (74)
111 cd02066 GRX_family Glutaredoxi 98.9 1.3E-08 2.9E-13 63.8 7.1 69 4-73 1-70 (72)
112 cd02976 NrdH NrdH-redoxin (Nrd 98.8 1.5E-08 3.1E-13 64.0 6.0 63 4-67 1-64 (73)
113 cd03418 GRX_GRXb_1_3_like Glut 98.8 4.5E-08 9.8E-13 62.3 7.2 71 4-75 1-73 (75)
114 TIGR02200 GlrX_actino Glutared 98.7 7.3E-08 1.6E-12 61.5 6.9 70 4-74 1-75 (77)
115 PF14834 GST_C_4: Glutathione 98.6 3.3E-07 7.1E-12 61.7 8.7 105 87-201 1-113 (117)
116 TIGR02181 GRX_bact Glutaredoxi 98.6 1.5E-07 3.3E-12 60.5 6.7 71 5-76 1-72 (79)
117 COG0695 GrxC Glutaredoxin and 98.6 3.1E-07 6.7E-12 59.2 7.2 69 4-73 2-73 (80)
118 TIGR02194 GlrX_NrdH Glutaredox 98.6 1.7E-07 3.8E-12 59.2 5.7 57 5-62 1-57 (72)
119 PRK11200 grxA glutaredoxin 1; 98.5 4.8E-07 1E-11 59.1 7.4 76 4-79 2-84 (85)
120 TIGR02189 GlrX-like_plant Glut 98.5 1E-06 2.2E-11 59.2 8.5 70 3-73 8-81 (99)
121 PF00462 Glutaredoxin: Glutare 98.5 2.3E-07 4.9E-12 56.4 4.0 59 5-64 1-60 (60)
122 cd03419 GRX_GRXh_1_2_like Glut 98.5 1.5E-06 3.2E-11 56.2 7.9 72 4-76 1-76 (82)
123 PHA03050 glutaredoxin; Provisi 98.4 1.6E-06 3.5E-11 59.1 8.2 69 3-72 13-88 (108)
124 TIGR02183 GRXA Glutaredoxin, G 98.4 2.5E-06 5.5E-11 55.8 7.3 75 5-79 2-83 (86)
125 TIGR00365 monothiol glutaredox 98.3 3.4E-06 7.4E-11 56.4 7.3 71 3-74 12-88 (97)
126 cd03028 GRX_PICOT_like Glutare 98.3 5.7E-06 1.2E-10 54.6 7.3 71 3-74 8-84 (90)
127 TIGR02180 GRX_euk Glutaredoxin 98.2 1.2E-05 2.6E-10 52.1 7.9 71 5-76 1-77 (84)
128 PF10568 Tom37: Outer mitochon 97.9 7.4E-05 1.6E-09 46.9 6.9 55 12-74 13-71 (72)
129 PRK12759 bifunctional gluaredo 97.9 6E-05 1.3E-09 63.6 7.9 70 1-72 1-79 (410)
130 KOG1147 Glutamyl-tRNA syntheta 97.8 3.1E-05 6.8E-10 65.4 5.3 112 54-188 38-150 (712)
131 PRK10824 glutaredoxin-4; Provi 97.8 0.00013 2.8E-09 50.2 7.0 71 3-74 15-91 (115)
132 cd03031 GRX_GRX_like Glutaredo 97.6 0.0003 6.6E-09 50.6 7.3 69 4-73 1-80 (147)
133 PF04399 Glutaredoxin2_C: Glut 97.6 0.00059 1.3E-08 48.0 8.0 67 121-196 58-124 (132)
134 KOG1752 Glutaredoxin and relat 97.5 0.00059 1.3E-08 46.0 7.0 71 3-74 14-88 (104)
135 COG4545 Glutaredoxin-related p 97.4 0.00076 1.7E-08 41.7 5.6 63 1-65 1-77 (85)
136 cd03199 GST_C_GRX2 GST_C famil 97.3 0.0017 3.6E-08 45.4 7.2 67 121-196 59-125 (128)
137 PTZ00062 glutaredoxin; Provisi 97.2 0.0015 3.2E-08 49.7 7.2 70 3-73 113-188 (204)
138 cd02973 TRX_GRX_like Thioredox 97.2 0.0017 3.6E-08 39.9 6.0 58 4-65 2-64 (67)
139 cd03036 ArsC_like Arsenate Red 97.0 0.0011 2.3E-08 45.5 3.8 34 5-38 1-34 (111)
140 cd02977 ArsC_family Arsenate R 96.9 0.0015 3.2E-08 44.3 3.9 33 5-37 1-33 (105)
141 PRK01655 spxA transcriptional 96.8 0.0023 5.1E-08 45.2 4.4 32 5-36 2-33 (131)
142 cd03032 ArsC_Spx Arsenate Redu 96.7 0.0031 6.7E-08 43.5 4.3 32 5-36 2-33 (115)
143 TIGR01617 arsC_related transcr 96.5 0.0043 9.2E-08 42.9 4.0 32 5-36 1-32 (117)
144 PRK10026 arsenate reductase; P 96.4 0.0053 1.2E-07 43.8 4.2 34 1-35 1-34 (141)
145 COG0278 Glutaredoxin-related p 96.4 0.021 4.5E-07 37.7 6.5 72 3-75 15-93 (105)
146 PRK13344 spxA transcriptional 96.3 0.011 2.4E-07 41.8 5.4 33 5-37 2-34 (132)
147 PRK12559 transcriptional regul 96.3 0.01 2.2E-07 41.9 5.1 33 5-37 2-34 (131)
148 TIGR00412 redox_disulf_2 small 96.2 0.028 6E-07 35.6 6.2 55 5-65 3-61 (76)
149 cd03035 ArsC_Yffb Arsenate Red 96.2 0.0084 1.8E-07 40.6 3.9 32 5-36 1-32 (105)
150 cd03033 ArsC_15kD Arsenate Red 96.1 0.01 2.2E-07 40.8 4.1 33 4-36 1-33 (113)
151 cd03030 GRX_SH3BGR Glutaredoxi 96.1 0.04 8.7E-07 36.3 6.8 67 5-72 2-79 (92)
152 COG1393 ArsC Arsenate reductas 95.8 0.016 3.5E-07 40.0 4.2 33 4-36 2-34 (117)
153 PF05768 DUF836: Glutaredoxin- 95.5 0.065 1.4E-06 34.3 6.0 55 4-61 1-57 (81)
154 TIGR00411 redox_disulf_1 small 95.5 0.15 3.2E-06 32.3 7.5 57 4-62 2-62 (82)
155 TIGR01616 nitro_assoc nitrogen 95.3 0.032 6.9E-07 39.1 4.2 33 4-36 2-34 (126)
156 PF04908 SH3BGR: SH3-binding, 95.2 0.11 2.4E-06 34.7 6.3 71 1-74 1-87 (99)
157 PHA02125 thioredoxin-like prot 94.9 0.12 2.6E-06 32.5 5.8 51 5-59 2-52 (75)
158 PRK10853 putative reductase; P 94.9 0.048 1E-06 37.7 4.2 32 5-36 2-33 (118)
159 cd01659 TRX_superfamily Thiore 94.8 0.072 1.6E-06 31.1 4.5 54 5-59 1-59 (69)
160 cd03026 AhpF_NTD_C TRX-GRX-lik 94.6 0.14 3.1E-06 33.4 5.7 57 5-65 16-77 (89)
161 cd03034 ArsC_ArsC Arsenate Red 94.4 0.068 1.5E-06 36.6 3.9 31 5-35 1-31 (112)
162 TIGR00014 arsC arsenate reduct 94.3 0.075 1.6E-06 36.5 3.9 32 5-36 1-32 (114)
163 PF11287 DUF3088: Protein of u 92.6 0.42 9.1E-06 32.4 5.2 68 12-79 23-108 (112)
164 PF11801 Tom37_C: Tom37 C-term 92.1 0.34 7.4E-06 35.8 4.7 38 126-163 112-153 (168)
165 PF13192 Thioredoxin_3: Thiore 91.6 0.75 1.6E-05 28.9 5.4 57 5-67 3-63 (76)
166 PF03960 ArsC: ArsC family; I 87.4 0.78 1.7E-05 31.1 3.3 29 8-36 1-29 (110)
167 KOG0911 Glutaredoxin-related p 87.2 2.3 5.1E-05 32.6 5.9 71 4-75 140-216 (227)
168 TIGR01295 PedC_BrcD bacterioci 85.3 4.6 9.9E-05 28.0 6.3 33 5-37 27-63 (122)
169 KOG1668 Elongation factor 1 be 84.5 0.65 1.4E-05 35.7 1.8 59 128-197 10-68 (231)
170 PF11417 Inhibitor_G39P: Loade 84.4 4.8 0.0001 25.0 5.4 37 66-104 5-43 (71)
171 PF00085 Thioredoxin: Thioredo 81.3 12 0.00026 24.2 8.2 69 5-76 21-102 (103)
172 cd02949 TRX_NTR TRX domain, no 80.7 9.7 0.00021 24.8 6.3 58 5-64 17-80 (97)
173 cd02947 TRX_family TRX family; 79.4 12 0.00027 23.2 6.8 54 5-62 14-74 (93)
174 COG3019 Predicted metal-bindin 77.4 9.3 0.0002 27.1 5.3 75 4-78 27-104 (149)
175 PF09635 MetRS-N: MetRS-N bind 77.2 2 4.2E-05 29.7 2.0 27 53-79 35-63 (122)
176 cd02953 DsbDgamma DsbD gamma f 76.3 8.3 0.00018 25.4 5.0 52 5-58 15-77 (104)
177 cd02963 TRX_DnaJ TRX domain, D 75.8 21 0.00046 24.0 7.6 57 5-63 28-91 (111)
178 cd02989 Phd_like_TxnDC9 Phosdu 75.8 16 0.00035 24.7 6.3 58 5-66 26-90 (113)
179 KOG3425 Uncharacterized conser 75.5 11 0.00023 26.1 5.1 68 9-77 41-122 (128)
180 TIGR03143 AhpF_homolog putativ 73.5 11 0.00023 33.6 6.2 56 5-65 480-541 (555)
181 cd02975 PfPDO_like_N Pyrococcu 73.2 13 0.00029 25.1 5.4 52 5-58 25-80 (113)
182 PHA03075 glutaredoxin-like pro 71.3 7.5 0.00016 26.6 3.6 70 1-78 1-70 (123)
183 cd02984 TRX_PICOT TRX domain, 71.0 25 0.00053 22.6 6.4 58 5-64 18-81 (97)
184 PF09849 DUF2076: Uncharacteri 70.6 51 0.0011 26.0 8.6 66 67-138 6-71 (247)
185 PHA02278 thioredoxin-like prot 70.4 29 0.00063 23.1 6.5 58 6-64 19-85 (103)
186 TIGR02187 GlrX_arch Glutaredox 68.7 22 0.00047 27.2 6.3 53 5-59 137-192 (215)
187 PTZ00051 thioredoxin; Provisio 64.9 34 0.00074 21.9 6.2 57 5-63 22-83 (98)
188 KOG2824 Glutaredoxin-related p 64.8 11 0.00024 30.0 3.9 57 16-73 150-211 (281)
189 cd02951 SoxW SoxW family; SoxW 64.2 26 0.00055 24.0 5.4 16 5-20 18-33 (125)
190 PRK09381 trxA thioredoxin; Pro 63.4 40 0.00087 22.2 7.9 58 5-64 25-88 (109)
191 cd02959 ERp19 Endoplasmic reti 63.3 37 0.0008 23.2 6.0 60 5-65 23-91 (117)
192 PF04134 DUF393: Protein of un 61.7 29 0.00062 23.3 5.2 69 7-77 1-77 (114)
193 PF01323 DSBA: DSBA-like thior 59.9 14 0.00031 27.3 3.8 35 4-38 1-40 (193)
194 COG3118 Thioredoxin domain-con 58.3 83 0.0018 25.6 7.8 73 5-79 47-131 (304)
195 TIGR03140 AhpF alkyl hydropero 58.1 15 0.00033 32.3 4.1 72 4-77 120-198 (515)
196 TIGR02187 GlrX_arch Glutaredox 57.4 46 0.001 25.4 6.2 57 5-63 23-89 (215)
197 cd03003 PDI_a_ERdj5_N PDIa fam 57.1 51 0.0011 21.4 5.8 56 5-62 22-83 (101)
198 PRK15317 alkyl hydroperoxide r 56.9 18 0.00039 31.8 4.4 72 4-77 119-197 (517)
199 cd02993 PDI_a_APS_reductase PD 56.2 51 0.0011 21.9 5.7 53 5-58 25-83 (109)
200 cd02948 TRX_NDPK TRX domain, T 54.3 59 0.0013 21.3 7.7 56 5-63 21-83 (102)
201 cd02962 TMX2 TMX2 family; comp 53.8 79 0.0017 22.8 6.6 60 5-65 51-122 (152)
202 cd02957 Phd_like Phosducin (Ph 50.7 51 0.0011 22.1 5.0 62 6-72 29-97 (113)
203 PF06110 DUF953: Eukaryotic pr 50.4 18 0.00038 25.1 2.6 60 9-70 34-108 (119)
204 PRK10996 thioredoxin 2; Provis 49.9 88 0.0019 22.0 8.3 58 5-64 56-119 (139)
205 cd02954 DIM1 Dim1 family; Dim1 48.3 80 0.0017 21.6 5.6 56 7-64 20-81 (114)
206 cd03021 DsbA_GSTK DsbA family, 47.4 29 0.00063 26.3 3.7 34 4-37 2-39 (209)
207 cd02952 TRP14_like Human TRX-r 45.8 98 0.0021 21.3 6.2 55 11-66 38-105 (119)
208 cd02985 TRX_CDSP32 TRX family, 45.3 86 0.0019 20.5 6.3 58 6-64 20-84 (103)
209 TIGR01068 thioredoxin thioredo 44.9 79 0.0017 20.0 7.8 56 5-62 18-79 (101)
210 cd02956 ybbN ybbN protein fami 43.9 84 0.0018 20.0 6.6 57 5-63 16-78 (96)
211 cd02950 TxlA TRX-like protein 43.3 1.2E+02 0.0025 21.5 6.3 59 5-64 24-90 (142)
212 PF13098 Thioredoxin_2: Thiore 42.5 28 0.00061 23.0 2.7 34 5-38 9-49 (112)
213 cd03020 DsbA_DsbC_DsbG DsbA fa 41.8 33 0.00073 25.7 3.2 22 4-25 80-101 (197)
214 cd02999 PDI_a_ERp44_like PDIa 41.6 1E+02 0.0022 20.2 5.4 51 5-58 22-77 (100)
215 cd04911 ACT_AKiii-YclM-BS_1 AC 41.0 39 0.00085 21.3 2.9 24 13-36 15-38 (76)
216 cd02987 Phd_like_Phd Phosducin 40.6 1.5E+02 0.0032 21.9 6.8 63 7-72 89-156 (175)
217 cd02997 PDI_a_PDIR PDIa family 40.6 98 0.0021 19.8 6.2 53 5-58 21-80 (104)
218 TIGR02681 phage_pRha phage reg 40.3 35 0.00076 23.1 2.8 26 54-79 2-28 (108)
219 PRK09266 hypothetical protein; 38.3 54 0.0012 25.9 4.1 57 22-79 200-259 (266)
220 PF14595 Thioredoxin_9: Thiore 38.3 21 0.00046 25.0 1.6 52 5-58 45-102 (129)
221 PF04564 U-box: U-box domain; 38.2 97 0.0021 19.1 4.5 25 53-78 15-39 (73)
222 cd03004 PDI_a_ERdj5_C PDIa fam 38.1 92 0.002 20.2 4.7 52 5-58 23-78 (104)
223 cd02994 PDI_a_TMX PDIa family, 37.0 1.1E+02 0.0025 19.6 5.5 52 5-58 20-76 (101)
224 COG3011 Predicted thiol-disulf 36.6 1.6E+02 0.0034 21.0 7.0 75 3-78 8-87 (137)
225 PRK11657 dsbG disulfide isomer 36.6 51 0.0011 26.0 3.6 20 5-24 121-140 (251)
226 PRK10877 protein disulfide iso 36.1 54 0.0012 25.5 3.7 21 5-25 111-131 (232)
227 cd02955 SSP411 TRX domain, SSP 35.8 1.5E+02 0.0032 20.5 6.4 59 7-67 21-97 (124)
228 PTZ00102 disulphide isomerase; 35.1 2.6E+02 0.0056 24.0 8.1 73 5-79 53-139 (477)
229 cd02972 DsbA_family DsbA famil 34.9 49 0.0011 20.6 2.9 22 5-26 1-22 (98)
230 cd05142 Barstar Barstar is an 33.5 83 0.0018 20.3 3.6 32 57-88 2-33 (87)
231 cd03022 DsbA_HCCA_Iso DsbA fam 33.3 61 0.0013 23.8 3.5 32 5-36 1-36 (192)
232 PF15608 PELOTA_1: PELOTA RNA 33.2 92 0.002 20.8 3.8 30 5-34 58-87 (100)
233 PF12290 DUF3802: Protein of u 32.7 47 0.001 22.6 2.4 85 68-158 9-97 (113)
234 cd03005 PDI_a_ERp46 PDIa famil 32.6 1.3E+02 0.0029 19.1 5.7 56 5-62 20-84 (102)
235 cd03025 DsbA_FrnE_like DsbA fa 32.5 76 0.0016 23.3 3.9 32 4-35 2-39 (193)
236 cd02970 PRX_like2 Peroxiredoxi 32.5 68 0.0015 22.3 3.5 50 10-61 33-89 (149)
237 TIGR01130 ER_PDI_fam protein d 32.1 2.7E+02 0.0059 23.6 7.7 73 5-79 22-110 (462)
238 TIGR01764 excise DNA binding d 32.1 82 0.0018 16.9 3.2 24 52-75 25-48 (49)
239 cd02996 PDI_a_ERp44 PDIa famil 31.4 1.3E+02 0.0028 19.7 4.6 56 5-62 22-89 (108)
240 COG5515 Uncharacterized conser 31.2 50 0.0011 19.7 2.1 21 4-24 2-26 (70)
241 PRK15371 effector protein YopJ 30.3 1.8E+02 0.0039 23.6 5.7 41 122-163 23-63 (287)
242 cd03024 DsbA_FrnE DsbA family, 30.0 60 0.0013 24.1 3.0 32 5-36 1-40 (201)
243 PF09413 DUF2007: Domain of un 30.0 52 0.0011 19.7 2.2 32 6-37 2-33 (67)
244 cd03000 PDI_a_TMX3 PDIa family 28.5 1.7E+02 0.0037 19.0 5.4 52 5-58 19-77 (104)
245 cd03006 PDI_a_EFP1_N PDIa fami 28.1 1.1E+02 0.0023 20.8 3.7 51 5-58 33-89 (113)
246 PF13728 TraF: F plasmid trans 27.8 99 0.0021 23.8 3.8 52 5-58 124-188 (215)
247 cd01965 Nitrogenase_MoFe_beta_ 27.8 3.9E+02 0.0084 22.9 8.8 118 16-146 171-305 (428)
248 TIGR01126 pdi_dom protein disu 27.8 68 0.0015 20.5 2.6 52 5-58 17-74 (102)
249 PF09868 DUF2095: Uncharacteri 27.6 44 0.00096 22.9 1.6 65 15-79 24-92 (128)
250 PTZ00443 Thioredoxin domain-co 27.2 3E+02 0.0065 21.4 10.5 72 5-79 56-140 (224)
251 cd02965 HyaE HyaE family; HyaE 26.6 1.5E+02 0.0032 20.2 4.1 61 5-67 31-99 (111)
252 cd03002 PDI_a_MPD1_like PDI fa 25.8 1.9E+02 0.0042 18.7 5.7 53 5-58 22-79 (109)
253 PF11823 DUF3343: Protein of u 25.2 1.5E+02 0.0033 18.1 3.7 32 5-36 3-34 (73)
254 PF09314 DUF1972: Domain of un 23.8 73 0.0016 23.9 2.4 20 60-79 154-173 (185)
255 PF12728 HTH_17: Helix-turn-he 23.3 1.5E+02 0.0032 16.4 3.3 26 52-77 25-50 (51)
256 COG5494 Predicted thioredoxin/ 22.7 2.3E+02 0.005 21.9 4.8 60 4-65 12-71 (265)
257 KOG0190 Protein disulfide isom 22.4 3.5E+02 0.0076 23.9 6.4 73 5-79 46-133 (493)
258 cd00449 PLPDE_IV PyridoxaL 5'- 22.4 1.3E+02 0.0027 23.5 3.6 54 22-76 196-254 (256)
259 cd02961 PDI_a_family Protein D 21.9 2.1E+02 0.0045 17.7 5.7 52 5-58 19-76 (101)
260 PLN02309 5'-adenylylsulfate re 21.8 2.8E+02 0.0061 24.2 5.8 53 5-58 369-427 (457)
261 COG5460 Uncharacterized conser 21.3 2.3E+02 0.005 17.9 4.8 36 68-110 16-51 (82)
262 PF10673 DUF2487: Protein of u 21.2 94 0.002 22.3 2.4 48 98-145 8-55 (142)
263 cd03023 DsbA_Com1_like DsbA fa 21.2 92 0.002 21.6 2.5 20 4-23 8-27 (154)
264 PF07181 VirC2: VirC2 protein; 20.4 2.3E+02 0.0051 21.2 4.2 29 118-146 107-135 (202)
265 PRK13728 conjugal transfer pro 20.2 1.9E+02 0.004 21.7 3.9 30 5-34 73-106 (181)
266 cd01557 BCAT_beta_family BCAT_ 20.1 1.1E+02 0.0023 24.5 2.8 54 22-76 211-271 (279)
No 1
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-42 Score=258.47 Aligned_cols=214 Identities=50% Similarity=0.772 Sum_probs=192.6
Q ss_pred ceEEeccCCChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhcC-CCC
Q 027333 4 EVKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVDETWK-QNP 82 (225)
Q Consensus 4 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~~~~~-~~~ 82 (225)
.++||++..|||++|++++|+++||+|+.+..|+.++++++++.||.+++||||+|+|.+|+||..|++|||+.++ +++
T Consensus 9 ~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~~~ 88 (231)
T KOG0406|consen 9 TVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSGPP 88 (231)
T ss_pred eEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCCCC
Confidence 4899999999999999999999999999999999999999999997679999999999999999999999999999 589
Q ss_pred CCCCCHHHHHHHHHHHHHccchhhHHHHHHHhc-CchhHHHHHHHHHHHHHHHHHhcC-CCcccccCCCChhhhhHHHHH
Q 027333 83 LLPEDPYERARARFWAKFGDDKVLASIWNAFIK-QGKEQEEAIGLAIETLKFLEEELK-GKRFFGGEKIGLPDLALGWLA 160 (225)
Q Consensus 83 l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~le~~L~-~~~fl~G~~~t~aD~~l~~~l 160 (225)
++|.||.+|++++.|.++++..+......++.. .++.++...+++.+.|..||+.|. +++|++|+++++.|+++++.+
T Consensus 89 iLP~DPy~Ra~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~lE~el~k~k~~fgG~~~G~vDi~~~p~~ 168 (231)
T KOG0406|consen 89 ILPSDPYERAQARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVLEEELGKGKDFFGGETIGFVDIAIGPSF 168 (231)
T ss_pred CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCHhhhhHHhhH
Confidence 999999999999999999999988887777774 557888899999999999999998 899999999999999999765
Q ss_pred HHHH-HHHHHhhcccccccccchHHHHHHHHHcCchhhhcCCChHHHHHHHHHHHhHH
Q 027333 161 NLIG-VFEEVIGVKLIEKERFPLLSAWMQEFAEAPVIKESWPPHEKLVTKFRAIREPY 217 (225)
Q Consensus 161 ~~~~-~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 217 (225)
.... ......+.+.+...++|+|.+|.++|.++|.+++++++.+.+.+++++.++..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~~V~~~~p~~e~~~e~~~~~~~~~ 226 (231)
T KOG0406|consen 169 ERWLAVLEKFGGVKFIIEEETPKLIKWIKRMKEDEAVKAVLPDSEKVVEFMKKYRQGS 226 (231)
T ss_pred HHHHHHHHHhcCcccCCCCCCccHHHHHHHHhcChhHHhhcCCHHHHHHHHHHHHHhc
Confidence 5554 33333333455567999999999999999999999999999999999988753
No 2
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=100.00 E-value=6.6e-40 Score=252.07 Aligned_cols=196 Identities=22% Similarity=0.278 Sum_probs=168.5
Q ss_pred ceEEeccCCChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhcCCCCC
Q 027333 4 EVKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVDETWKQNPL 83 (225)
Q Consensus 4 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~~~~~~~~l 83 (225)
.|+||+++.||+|++|+++|+++|++|+.+.++..+++++|+++||. |+||+|++||.+|+||.+|++||++++++..+
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~-g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~~l 88 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPY-QSVPTLVDRELTLYESRIIMEYLDERFPHPPL 88 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCC-CCCCEEEECCEEeeCHHHHHHHHHHhCCCCCC
Confidence 48999999999999999999999999999999988878899999999 99999999999999999999999999998889
Q ss_pred CCCCHHHHHHHHHHHHHccchhhHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhcCCCcccccCCCChhhhhHHHHHHHH
Q 027333 84 LPEDPYERARARFWAKFGDDKVLASIWNAFIKQGKEQEEAIGLAIETLKFLEEELKGKRFFGGEKIGLPDLALGWLANLI 163 (225)
Q Consensus 84 ~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~ 163 (225)
+|.++.+++.+++|+.++.+.+......+....+...+...+.+.+.+..+|++|++++||+|+++|+||+++++.+.++
T Consensus 89 ~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~AD~~l~~~~~~~ 168 (211)
T PRK09481 89 MPVYPVARGESRLMMHRIEKDWYSLMNKIVNGSASEADAARKQLREELLAIAPVFGEKPYFMSEEFSLVDCYLAPLLWRL 168 (211)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCccHHHHHHHHHHHHH
Confidence 99999999999999988776655444333333344556677889999999999999999999999999999999988766
Q ss_pred HHHHHHhhcccccccccchHHHHHHHHHcCchhhhcCCChHH
Q 027333 164 GVFEEVIGVKLIEKERFPLLSAWMQEFAEAPVIKESWPPHEK 205 (225)
Q Consensus 164 ~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~ 205 (225)
... +.+.. .+.+|+|.+|+++|.++|++++++...+.
T Consensus 169 ~~~----~~~~~-~~~~p~l~~w~~~~~~rp~~~~~~~~~~~ 205 (211)
T PRK09481 169 PVL----GIELS-GPGAKELKGYMTRVFERDSFLASLTEAER 205 (211)
T ss_pred Hhc----CCCCC-CCCChhHHHHHHHHhccHHHHHHcCHHHH
Confidence 432 43332 25799999999999999999999886543
No 3
>PLN02473 glutathione S-transferase
Probab=100.00 E-value=2.4e-36 Score=232.87 Aligned_cols=193 Identities=22% Similarity=0.257 Sum_probs=158.8
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecCCC---CCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhcCCC
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLS---NKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVDETWKQN 81 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~~~~~~~ 81 (225)
|+||+++.||+++||+++|+++||+|+.+.++.. ...++++++||. |+||+|++||.+|+||.+|++||++++++.
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~ES~aI~~YL~~~~~~~ 81 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPF-GQVPAIEDGDLKLFESRAIARYYATKYADQ 81 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCC-CCCCeEEECCEEEEehHHHHHHHHHHcCCc
Confidence 8999999999999999999999999999998875 457889999999 999999999999999999999999999743
Q ss_pred --CCCCCCHHHHHHHHHHHHHccchhhHHHH-----HHHhc------CchhHHHHHHHHHHHHHHHHHhcCCCcccccCC
Q 027333 82 --PLLPEDPYERARARFWAKFGDDKVLASIW-----NAFIK------QGKEQEEAIGLAIETLKFLEEELKGKRFFGGEK 148 (225)
Q Consensus 82 --~l~p~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~~------~~~~~~~~~~~l~~~l~~le~~L~~~~fl~G~~ 148 (225)
.++|.++.+++++++|+.+..+.+.+... ..+.. .....+....++.+.++.||++|++++|++|++
T Consensus 82 ~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~ 161 (214)
T PLN02473 82 GTDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLATNRYLGGDE 161 (214)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhccCCcccCCC
Confidence 68999999999999999888776644322 12211 112345566788899999999999889999999
Q ss_pred CChhhhhHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHcCchhhhcCCC
Q 027333 149 IGLPDLALGWLANLIGVFEEVIGVKLIEKERFPLLSAWMQEFAEAPVIKESWPP 202 (225)
Q Consensus 149 ~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 202 (225)
+|+||+++++.+.++.... ....+ .+++|+|.+|+++|.++|++++++..
T Consensus 162 ~t~ADi~~~~~~~~~~~~~---~~~~~-~~~~P~l~~w~~~~~~~p~~~~~~~~ 211 (214)
T PLN02473 162 FTLADLTHMPGMRYIMNET---SLSGL-VTSRENLNRWWNEISARPAWKKLMEL 211 (214)
T ss_pred CCHHHHHHHHHHHHHHhcc---ccHHH-HhcCHHHHHHHHHHhcChhhHHHHHH
Confidence 9999999999887653211 11111 35899999999999999999998653
No 4
>PRK15113 glutathione S-transferase; Provisional
Probab=100.00 E-value=1.4e-35 Score=228.50 Aligned_cols=194 Identities=23% Similarity=0.267 Sum_probs=158.6
Q ss_pred CC-CceEEeccC--CChhhHHHHHHHHHcCCCceEEecCCCC---CChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHH
Q 027333 1 MA-EEVKLLKTW--SSPFGLRAFWILKLKGVQFDFIDEDLSN---KSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYV 74 (225)
Q Consensus 1 M~-~~~~Ly~~~--~sp~~~~vr~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL 74 (225)
|+ +.++||+.+ .||+|++++++|+++||+|+.+.+++.. ..++|+++||. |+||+|++||.+|+||.+|++||
T Consensus 1 ~~~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~-g~VP~L~~~~~~l~ES~aI~~YL 79 (214)
T PRK15113 1 MSKPAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLT-RRVPTLQHDDFELSESSAIAEYL 79 (214)
T ss_pred CCCCeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCC-CCCCEEEECCEEEecHHHHHHHH
Confidence 55 468999975 7999999999999999999999998753 45899999999 99999999999999999999999
Q ss_pred HhhcCCCC---CCCCCHHHHHHHHHHHHHccchhhHHHHH-----HHhc--CchhHHHHHHHHHHHHHHHHHhcCC-Ccc
Q 027333 75 DETWKQNP---LLPEDPYERARARFWAKFGDDKVLASIWN-----AFIK--QGKEQEEAIGLAIETLKFLEEELKG-KRF 143 (225)
Q Consensus 75 ~~~~~~~~---l~p~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~l~~~l~~le~~L~~-~~f 143 (225)
+++++++. ++|.++.+++++++|+.++.+.+.+.... .+.. .....+...+.+.+.++.+|++|++ ++|
T Consensus 80 ~~~~~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~ 159 (214)
T PRK15113 80 EERFAPPAWERIYPADLQARARARQIQAWLRSDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERLLAPGQPN 159 (214)
T ss_pred HHHcCCCCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 99998765 99999999999999999987665543211 1111 1223456677889999999999974 579
Q ss_pred cccCCCChhhhhHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHcCchhhhcCCChHH
Q 027333 144 FGGEKIGLPDLALGWLANLIGVFEEVIGVKLIEKERFPLLSAWMQEFAEAPVIKESWPPHEK 205 (225)
Q Consensus 144 l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~ 205 (225)
++|+ +|+||+++++.+.++... +.. . .|+|.+|+++|.++|+|++++++.+.
T Consensus 160 l~G~-~TlADi~l~~~l~~~~~~----~~~---~--~p~l~~~~~r~~~rp~~~~~~~~~~~ 211 (214)
T PRK15113 160 LFGE-WCIADTDLALMLNRLVLH----GDE---V--PERLADYATFQWQRASVQRWLALSAK 211 (214)
T ss_pred eeCC-ccHHHHHHHHHHHHHHHc----CCC---C--CHHHHHHHHHHhcCHHHHHHHHHhhh
Confidence 9996 999999999988766321 321 1 29999999999999999998876543
No 5
>PLN02395 glutathione S-transferase
Probab=100.00 E-value=2.6e-35 Score=227.27 Aligned_cols=194 Identities=25% Similarity=0.330 Sum_probs=157.1
Q ss_pred CCCceEEeccCCChhhHHHHHHHHHcCCCceEEecCCC---CCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhh
Q 027333 1 MAEEVKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLS---NKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVDET 77 (225)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~~~ 77 (225)
|+ ++||+.+.| +++|++++|+++|++|+.+.+++. ..+++|++.||. |+||+|+++|.+|+||.+|++||+++
T Consensus 1 ~~--~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~-g~vP~L~~~~~~l~ES~aI~~YL~~~ 76 (215)
T PLN02395 1 MV--LKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPF-GVVPVIVDGDYKIFESRAIMRYYAEK 76 (215)
T ss_pred Ce--EEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHHHH
Confidence 75 999997654 699999999999999999999875 456789999999 99999999999999999999999999
Q ss_pred cCC--CCCCCCCHHHHHHHHHHHHHccchhhHHHHHH-----Hh------cCchhHHHHHHHHHHHHHHHHHhcCCCccc
Q 027333 78 WKQ--NPLLPEDPYERARARFWAKFGDDKVLASIWNA-----FI------KQGKEQEEAIGLAIETLKFLEEELKGKRFF 144 (225)
Q Consensus 78 ~~~--~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~~~~~~~l~~~l~~le~~L~~~~fl 144 (225)
++. +.++|.++.+++++++|+.+..+.+.+.+... +. ..++..+...+.+.+.++.||++|++++|+
T Consensus 77 ~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l 156 (215)
T PLN02395 77 YRSQGPDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSKSKYL 156 (215)
T ss_pred cCCCCcCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 975 35999999999999999998776554433221 11 112234556788899999999999988999
Q ss_pred ccCCCChhhhhHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHcCchhhhcCCC
Q 027333 145 GGEKIGLPDLALGWLANLIGVFEEVIGVKLIEKERFPLLSAWMQEFAEAPVIKESWPP 202 (225)
Q Consensus 145 ~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 202 (225)
+|+++|+||+++++++.++... .+. ......+|+|.+|+++|.++|++++++..
T Consensus 157 ~G~~~s~ADi~l~~~~~~~~~~---~~~-~~~~~~~p~L~~w~~~~~~rp~~k~~~~~ 210 (215)
T PLN02395 157 AGDFVSLADLAHLPFTEYLVGP---IGK-AYLIKDRKHVSAWWDDISSRPAWKEVLAK 210 (215)
T ss_pred cCCCcCHHHHHHHHHHHHHhcc---cch-hhhhccCchHHHHHHHHHcChHHHHHHHH
Confidence 9999999999999987665311 011 11245799999999999999999998764
No 6
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=100.00 E-value=2.1e-35 Score=227.70 Aligned_cols=188 Identities=20% Similarity=0.286 Sum_probs=152.4
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecCCCC---CChhhhhhCCCCCcccEEEe-----CC--eeeeehHHHHHHH
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSN---KSPLLLQSNPVYKKVPVLIH-----NG--KPISESLVILEYV 74 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~g~vP~L~~-----~g--~~l~es~~I~~yL 74 (225)
|+||+.+ +|++++|+++|+++||+|+.+.+++.. ..++|+++||. |+||+|++ || .+|+||.||++||
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~-gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPN-NKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcC-CCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 7999876 799999999999999999999998752 36789999999 99999996 45 4799999999999
Q ss_pred HhhcCCCCCCCCCHHHHHHHHHHHHHccchhhHHHHHH--Hhc-----CchhHHHHHHHHHHHHHHHHHhcCCCcccccC
Q 027333 75 DETWKQNPLLPEDPYERARARFWAKFGDDKVLASIWNA--FIK-----QGKEQEEAIGLAIETLKFLEEELKGKRFFGGE 147 (225)
Q Consensus 75 ~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~l~~~l~~le~~L~~~~fl~G~ 147 (225)
+++++ .+.|.++.+++++++|+.|..+.+.+.+... +.. .+...+.....+.+.+..||++|++++||+|+
T Consensus 80 ~~~~~--~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd 157 (215)
T PRK13972 80 AEKTG--LFLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENSPWLGGE 157 (215)
T ss_pred HHhcC--CCCCCCHHHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhccCccccCC
Confidence 99986 3778889999999999998877666543221 111 12334556678889999999999989999999
Q ss_pred CCChhhhhHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHcCchhhhcCCCh
Q 027333 148 KIGLPDLALGWLANLIGVFEEVIGVKLIEKERFPLLSAWMQEFAEAPVIKESWPPH 203 (225)
Q Consensus 148 ~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 203 (225)
++|+||+++++.+..... . + ++.+.||+|.+|+++|.++|++++++...
T Consensus 158 ~~t~ADi~l~~~~~~~~~---~-~---~~~~~~P~l~~w~~r~~~rp~~~~~~~~~ 206 (215)
T PRK13972 158 NYSIADIACWPWVNAWTR---Q-R---IDLAMYPAVKNWHERIRSRPATGQALLKA 206 (215)
T ss_pred CCCHHHHHHHHHHHHHhh---c-C---CcchhCHHHHHHHHHHHhCHHHHHHHHHh
Confidence 999999999886643311 1 2 22468999999999999999998876643
No 7
>PRK10542 glutathionine S-transferase; Provisional
Probab=100.00 E-value=2.4e-35 Score=225.17 Aligned_cols=189 Identities=19% Similarity=0.341 Sum_probs=157.2
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecCCC----CCChhhhhhCCCCCcccEEE-eCCeeeeehHHHHHHHHhhcC
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLS----NKSPLLLQSNPVYKKVPVLI-HNGKPISESLVILEYVDETWK 79 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~----~~~~~~~~~~p~~g~vP~L~-~~g~~l~es~~I~~yL~~~~~ 79 (225)
|+||+.+.| ++++++++|+++||+|+.+.+++. ...++|.++||. |+||+|+ +||.+|+||.+|++||+++++
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~-g~vPvL~~~~g~~l~eS~aI~~YL~~~~~ 78 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPK-GQVPALLLDDGTLLTEGVAIMQYLADSVP 78 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcC-CCCCeEEeCCCcEeecHHHHHHHHHHhCc
Confidence 589998866 799999999999999999999875 234789999999 9999998 588999999999999999998
Q ss_pred CCCCC-CCCHHHHHHHHHHHHHccchhhHHHHHHHhcC--chhHHHHHHHHHHHHHHHHHhcCCCcccccCCCChhhhhH
Q 027333 80 QNPLL-PEDPYERARARFWAKFGDDKVLASIWNAFIKQ--GKEQEEAIGLAIETLKFLEEELKGKRFFGGEKIGLPDLAL 156 (225)
Q Consensus 80 ~~~l~-p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~le~~L~~~~fl~G~~~t~aD~~l 156 (225)
++.++ |.++.+++++++|+.+..+.+.+.+...+... +...+...+.+.+.++.+|++|++++||+|+++|+||+++
T Consensus 79 ~~~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~ADi~l 158 (201)
T PRK10542 79 DRQLLAPVGSLSRYHTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKFQYVDEALADEQWICGQRFTIADAYL 158 (201)
T ss_pred ccccCCCCCcHHHHHHHHHHHHHHhhhhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCCcHHhHHH
Confidence 77666 66788999999999988777766555544332 2223456778899999999999989999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccccccchHHHHHHHHHcCchhhhcCCC
Q 027333 157 GWLANLIGVFEEVIGVKLIEKERFPLLSAWMQEFAEAPVIKESWPP 202 (225)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 202 (225)
++++.+.... +.+ .+.+|+|.+|+++|.++|.+++++..
T Consensus 159 ~~~~~~~~~~----~~~---~~~~p~l~~w~~~~~~~p~~k~~~~~ 197 (201)
T PRK10542 159 FTVLRWAYAV----KLN---LEGLEHIAAYMQRVAERPAVAAALKA 197 (201)
T ss_pred HHHHHHhhcc----CCC---cccchHHHHHHHHHHcCHHHHHHHHH
Confidence 9988776322 322 35899999999999999999998754
No 8
>PRK10357 putative glutathione S-transferase; Provisional
Probab=100.00 E-value=1.7e-34 Score=220.73 Aligned_cols=192 Identities=23% Similarity=0.289 Sum_probs=157.3
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEE-eCCeeeeehHHHHHHHHhhcCCCCC
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLI-HNGKPISESLVILEYVDETWKQNPL 83 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~-~~g~~l~es~~I~~yL~~~~~~~~l 83 (225)
|+||+++.||++++||++|+++|++|+.+.++......++.+.||. |+||+|+ +||.+++||.+|++||+++++++.+
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~-g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~l 79 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPL-GKVPALVTEEGECWFDSPIIAEYIELLNVAPAM 79 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCc-cCCCeEEeCCCCeeecHHHHHHHHHHhCCCCCC
Confidence 5899999999999999999999999999999877666788889999 9999998 6789999999999999999987779
Q ss_pred CCCCHHHHHHHHHHHHHccchhhHHHHHHHh----c---CchhHHHHHHHHHHHHHHHHHhcCCCcccccCCCChhhhhH
Q 027333 84 LPEDPYERARARFWAKFGDDKVLASIWNAFI----K---QGKEQEEAIGLAIETLKFLEEELKGKRFFGGEKIGLPDLAL 156 (225)
Q Consensus 84 ~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~l~~~l~~le~~L~~~~fl~G~~~t~aD~~l 156 (225)
+|.++.+++++++|..+.++.+......+.. . .+...+.....+.+.|+.||++|++++ ++|+++|+||+++
T Consensus 80 ~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~-l~Gd~~t~ADi~l 158 (202)
T PRK10357 80 LPRDPLAALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLVDGT-LKTDTVNLATIAI 158 (202)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhccCc-ccCCCcCHHHHHH
Confidence 9999999999999988776655433221111 1 122234567789999999999998878 9999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccccccchHHHHHHHHHcCchhhhcCCC
Q 027333 157 GWLANLIGVFEEVIGVKLIEKERFPLLSAWMQEFAEAPVIKESWPP 202 (225)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 202 (225)
++.+.++... .........+|+|.+|+++|.++|+|+++.+.
T Consensus 159 ~~~l~~~~~~----~~~~~~~~~~p~l~~~~~~i~~rp~~~~~~~~ 200 (202)
T PRK10357 159 ACAVGYLNFR----RVAPGWCVDRPHLVKLVENLFQRESFARTEPP 200 (202)
T ss_pred HHHHHHHHhc----ccCcchhhcChHHHHHHHHHhcChhhhhcCCC
Confidence 9988876431 11111135799999999999999999998764
No 9
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=100.00 E-value=1e-34 Score=223.14 Aligned_cols=190 Identities=28% Similarity=0.428 Sum_probs=156.5
Q ss_pred EEeccCCChhhHHHHHHHHHcCCCceEEecCCC----CCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhcCCC
Q 027333 6 KLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLS----NKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVDETWKQN 81 (225)
Q Consensus 6 ~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~----~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~~~~~~~ 81 (225)
+||++..||+++++|++|.++||+|+.+.++.. ...+++.++||. |+||+|++||.+|+||.+|++||++++++.
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~ 79 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQ-GLVPTLDIDGEVLTQSLAIIEYLEETYPDP 79 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCC-CcCCEEEECCEEeecHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999862 246789999999 899999999999999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHHccchhhHH----HHHHHhc----Cchh-HHHHHHHHHHHHHHHHHhcCC--CcccccCCCC
Q 027333 82 PLLPEDPYERARARFWAKFGDDKVLAS----IWNAFIK----QGKE-QEEAIGLAIETLKFLEEELKG--KRFFGGEKIG 150 (225)
Q Consensus 82 ~l~p~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~----~~~~-~~~~~~~l~~~l~~le~~L~~--~~fl~G~~~t 150 (225)
.++|.++.+++++++|+.++.+.+.+. +...+.. .++. .+...+.+.+.|+.||++|++ ++||+|+++|
T Consensus 80 ~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T 159 (210)
T TIGR01262 80 PLLPADPIKRARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPHAGAFCVGDTPT 159 (210)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeCCCCC
Confidence 899999999999999998886555432 1112211 1222 233456788999999999975 5699999999
Q ss_pred hhhhhHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHcCchhhhcCCCh
Q 027333 151 LPDLALGWLANLIGVFEEVIGVKLIEKERFPLLSAWMQEFAEAPVIKESWPPH 203 (225)
Q Consensus 151 ~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 203 (225)
+||+++++.+.++... +. +.+.||+|.+|+++|.++|+++++....
T Consensus 160 ~ADi~~~~~l~~~~~~----~~---~~~~~p~l~~~~~~~~~rp~~~~~~~~~ 205 (210)
T TIGR01262 160 LADLCLVPQVYNAERF----GV---DLTPYPTLRRIAAALAALPAFQRAHPEN 205 (210)
T ss_pred HHHHHHHHHHHHHHHc----CC---CcccchHHHHHHHHHhcCHHHHHhCccc
Confidence 9999999998876321 22 2458999999999999999999988753
No 10
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-34 Score=221.22 Aligned_cols=185 Identities=29% Similarity=0.473 Sum_probs=160.4
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecCCC--CCChhhhhhCCCCCcccEEEeCCe-eeeehHHHHHHHHhhcCCC
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLS--NKSPLLLQSNPVYKKVPVLIHNGK-PISESLVILEYVDETWKQN 81 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~--~~~~~~~~~~p~~g~vP~L~~~g~-~l~es~~I~~yL~~~~~~~ 81 (225)
++||+.+.||++++|++++.++|++|+.+.|+.. ...++|+..||. |+||+|+++|. +|+||.+|++||++++|++
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~-gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~ 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPL-GKVPALVDDDGEVLTESGAILEYLAERYPGP 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCC-CCCCEEeeCCCCeeecHHHHHHHHHhhCCCC
Confidence 5899999999999999999999999999999987 477899999999 99999997664 8999999999999999977
Q ss_pred CCCCCCHH---HHHHHHHHHHHccchhhHHHHHHHhc--------CchhHHHHHHHHHHHHHHHHHhcCCCcccccCCCC
Q 027333 82 PLLPEDPY---ERARARFWAKFGDDKVLASIWNAFIK--------QGKEQEEAIGLAIETLKFLEEELKGKRFFGGEKIG 150 (225)
Q Consensus 82 ~l~p~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~l~~le~~L~~~~fl~G~~~t 150 (225)
.++|.++. +++.+..|+.+....+.+.+...... .++..+...+.+...++.+|..|++++|++|+++|
T Consensus 80 ~l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t 159 (211)
T COG0625 80 PLLPADPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLADGPYLAGDRFT 159 (211)
T ss_pred CcCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCCC
Confidence 79998874 88888899999988888877665433 24456677889999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHcCchhh
Q 027333 151 LPDLALGWLANLIGVFEEVIGVKLIEKERFPLLSAWMQEFAEAPVIK 197 (225)
Q Consensus 151 ~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~ 197 (225)
+||+++++.+.++... +.. .+.+|++.+|++|+.++|.++
T Consensus 160 iAD~~~~~~~~~~~~~----~~~---~~~~p~l~~w~~r~~~rp~~~ 199 (211)
T COG0625 160 IADIALAPLLWRLALL----GEE---LADYPALKAWYERVLARPAFR 199 (211)
T ss_pred HHHHHHHHHHHHhhhc----Ccc---cccChHHHHHHHHHHcCCchh
Confidence 9999999988885332 222 258999999999999999965
No 11
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=100.00 E-value=2.2e-33 Score=216.66 Aligned_cols=193 Identities=20% Similarity=0.291 Sum_probs=157.3
Q ss_pred CCChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhcCC---CCCCCCC
Q 027333 11 WSSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVDETWKQ---NPLLPED 87 (225)
Q Consensus 11 ~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~~~~~~---~~l~p~~ 87 (225)
..||+|++|+++|.++||+|+.+.+++..++++|+++||. |+||+|+++|.+++||.+|++||+++++. +.+.|.+
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~-g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~p~~ 95 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPG-THPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLSPKH 95 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcC-CCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCCCCC
Confidence 5799999999999999999999999999888999999998 89999999999999999999999999974 4466666
Q ss_pred HHHHHHHHHHHHHccchhhHHHHHHHhc-CchhHHHHHHHHHHHHHHHHHhcC------------------CCcccccCC
Q 027333 88 PYERARARFWAKFGDDKVLASIWNAFIK-QGKEQEEAIGLAIETLKFLEEELK------------------GKRFFGGEK 148 (225)
Q Consensus 88 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~le~~L~------------------~~~fl~G~~ 148 (225)
+..++... .+...+..++.+ .+...+...+++.+.|+.||+.|. +++||.|++
T Consensus 96 ~~~~~~~~--------~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~~~f~~Gd~ 167 (236)
T TIGR00862 96 PESNTAGL--------DIFAKFSAYIKNSNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKVSRRKFLDGDE 167 (236)
T ss_pred HHHHHHHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCCcccCCc
Confidence 65544321 122333333333 233445566778999999999986 589999999
Q ss_pred CChhhhhHHHHHHHHHHHH-HHhhcccccccccchHHHHHHHHHcCchhhhcCCChHHHHHHHHHHH
Q 027333 149 IGLPDLALGWLANLIGVFE-EVIGVKLIEKERFPLLSAWMQEFAEAPVIKESWPPHEKLVTKFRAIR 214 (225)
Q Consensus 149 ~t~aD~~l~~~l~~~~~~~-~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 214 (225)
+|+|||++++.+.++.... ...+.+. .+.+|+|.+|++++.++|+|+++++..+.+...++...
T Consensus 168 ~tlaD~~l~p~l~~l~~~~~~~~~~~i--~~~~p~l~~w~~~~~~~~sf~~t~p~~~~i~~~~~~~~ 232 (236)
T TIGR00862 168 LTLADCNLLPKLHIVKVVAKKYRNFDI--PAEFTGVWRYLSNAYAREEFTNTCPDDKEIELAYADVA 232 (236)
T ss_pred cchhhHHHHHHHHHHHHHHHHHhCcCc--cccCchHHHHHHHHhccchHHhhCCChHHHHHHHHHHh
Confidence 9999999999998887642 3334444 46999999999999999999999999999998888763
No 12
>PRK11752 putative S-transferase; Provisional
Probab=100.00 E-value=1.6e-33 Score=222.88 Aligned_cols=196 Identities=18% Similarity=0.258 Sum_probs=153.7
Q ss_pred ceEEeccCCChhhHHHHHHHHHc------CCCceEEecCCC---CCChhhhhhCCCCCcccEEEeC----CeeeeehHHH
Q 027333 4 EVKLLKTWSSPFGLRAFWILKLK------GVQFDFIDEDLS---NKSPLLLQSNPVYKKVPVLIHN----GKPISESLVI 70 (225)
Q Consensus 4 ~~~Ly~~~~sp~~~~vr~~l~~~------gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~----g~~l~es~~I 70 (225)
+|+||+.+ ||++++|+++|+++ |++|+.+.+++. +..++|+++||. |+||+|+++ |.+|+||.+|
T Consensus 44 ~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~-GkVP~Lv~~dg~~~~~L~ES~AI 121 (264)
T PRK11752 44 PLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPN-SKIPALLDRSGNPPIRVFESGAI 121 (264)
T ss_pred CeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCC-CCCCEEEeCCCCCCeEEEcHHHH
Confidence 68999965 99999999999997 899999998875 346799999999 999999974 3689999999
Q ss_pred HHHHHhhcCCCCCCCCCHHHHHHHHHHHHHccchhhHH---HHHHHhc-C---chhHHHHHHHHHHHHHHHHHhcCCCcc
Q 027333 71 LEYVDETWKQNPLLPEDPYERARARFWAKFGDDKVLAS---IWNAFIK-Q---GKEQEEAIGLAIETLKFLEEELKGKRF 143 (225)
Q Consensus 71 ~~yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~-~---~~~~~~~~~~l~~~l~~le~~L~~~~f 143 (225)
++||+++++ .|+|.++.+++++++|+.+....+... ....+.. . +...+....++.+.|+.||++|++++|
T Consensus 122 l~YL~~~~~--~L~P~~~~era~v~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L~~~~f 199 (264)
T PRK11752 122 LLYLAEKFG--AFLPKDLAARTETLNWLFWQQGSAPFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLDKQLAEHEY 199 (264)
T ss_pred HHHHHHhcC--CcCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 999999997 389999999999999999876543111 1112211 1 122345567788999999999998999
Q ss_pred cccCCCChhhhhHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHcCchhhhcCCCh
Q 027333 144 FGGEKIGLPDLALGWLANLIGVFEEVIGVKLIEKERFPLLSAWMQEFAEAPVIKESWPPH 203 (225)
Q Consensus 144 l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 203 (225)
|+|+++|+|||++++.+.++............+.+.||+|.+|+++|.++|+++++....
T Consensus 200 l~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~rv~~rPs~k~~~~~~ 259 (264)
T PRK11752 200 IAGDEYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKEIAERPAVKRGRIVN 259 (264)
T ss_pred CCCCccCHHHHHHHHHHHHHhhccccccccccCcccCHHHHHHHHHHHhCHHHHHHHhcc
Confidence 999999999999999877663211000111122468999999999999999999987654
No 13
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-33 Score=200.55 Aligned_cols=193 Identities=26% Similarity=0.430 Sum_probs=166.1
Q ss_pred CceEEeccCCChhhHHHHHHHHHcCCCceEEecCCC----CCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhc
Q 027333 3 EEVKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLS----NKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVDETW 78 (225)
Q Consensus 3 ~~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~----~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~~~~ 78 (225)
.+.+||.+..|..++|||++|+.+||+|+.+.|++- +...+|.++||. ++||+|++||.+++||.||++||++++
T Consensus 4 ~KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm-~kVP~L~i~g~tl~eS~AII~YLeEt~ 82 (217)
T KOG0868|consen 4 AKPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPM-EKVPTLVIDGLTLTESLAIIEYLEETY 82 (217)
T ss_pred ccchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCch-hhCCeEEECCEEeehHHHHHHHHHhcC
Confidence 578999999999999999999999999999999875 334689999999 899999999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHccchhhHHHHH-HHh--cCch---hHHHHHHHHHHHHHHHHHhcC--CCcccccCCCC
Q 027333 79 KQNPLLPEDPYERARARFWAKFGDDKVLASIWN-AFI--KQGK---EQEEAIGLAIETLKFLEEELK--GKRFFGGEKIG 150 (225)
Q Consensus 79 ~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~--~~~~---~~~~~~~~l~~~l~~le~~L~--~~~fl~G~~~t 150 (225)
|+++|+|.|+..|+.++++...+.+.+.|.... ++. +.++ ........+.+.+..||+.|. .|+|-+|+++|
T Consensus 83 P~ppLLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~~~W~q~~ItkGF~ALEklL~~~aGkycvGDevt 162 (217)
T KOG0868|consen 83 PDPPLLPKDPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEPGYGDQWAQHFITKGFTALEKLLKSHAGKYCVGDEVT 162 (217)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhcccccchhhHHHHHHHHHhHHHHHHHHHHccCCcccCceee
Confidence 999999999999999999999998888776443 221 1111 245567788899999999995 58999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHcCchhhhcCCCh
Q 027333 151 LPDLALGWLANLIGVFEEVIGVKLIEKERFPLLSAWMQEFAEAPVIKESWPPH 203 (225)
Q Consensus 151 ~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 203 (225)
+||+++.+.+.....+ . .+...||.+.+..+.....|.|+...++.
T Consensus 163 iADl~L~pqv~nA~rf----~---vdl~PYPti~ri~e~l~elpaFq~ahP~n 208 (217)
T KOG0868|consen 163 IADLCLPPQVYNANRF----H---VDLTPYPTITRINEELAELPAFQAAHPDN 208 (217)
T ss_pred hhhhccchhhhhhhhc----c---ccCCcCchHHHHHHHHHhCHHHHhcCCCC
Confidence 9999999987776432 3 45679999999999999999999988764
No 14
>PLN02378 glutathione S-transferase DHAR1
Probab=100.00 E-value=3.9e-32 Score=209.06 Aligned_cols=187 Identities=22% Similarity=0.303 Sum_probs=146.3
Q ss_pred cCCChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhcCCCCCCCCCHH
Q 027333 10 TWSSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVDETWKQNPLLPEDPY 89 (225)
Q Consensus 10 ~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~~~~~~~~l~p~~~~ 89 (225)
...||||+||+++|+++|++|+.+.+++..++++|+++||. |+||+|++||.+|+||.+|++||++++++..+ .++.
T Consensus 17 ~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~-G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~l--~~~~ 93 (213)
T PLN02378 17 LGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQ-GKVPVLKIDDKWVTDSDVIVGILEEKYPDPPL--KTPA 93 (213)
T ss_pred CCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCC-CCCCEEEECCEEecCHHHHHHHHHHhCCCCCC--CCHH
Confidence 44699999999999999999999999998888899999999 99999999999999999999999999987655 3566
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhcC--CCcccccCCCChhhhhHHHHHHHHHHHH
Q 027333 90 ERARARFWAKFGDDKVLASIWNAFIKQGKEQEEAIGLAIETLKFLEEELK--GKRFFGGEKIGLPDLALGWLANLIGVFE 167 (225)
Q Consensus 90 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~--~~~fl~G~~~t~aD~~l~~~l~~~~~~~ 167 (225)
+++.+...+ ...+..++... ...+...+.+.+.|+.+|++|+ +++|++|+++|+||+++++.+.++....
T Consensus 94 ~~a~i~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~ADi~l~~~~~~l~~~~ 165 (213)
T PLN02378 94 EFASVGSNI-------FGTFGTFLKSK-DSNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVAL 165 (213)
T ss_pred HHHHHHHHH-------HHHHHHHHhcC-ChhhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCchhhHHHHHHHHHHHHHH
Confidence 666655432 22222222221 1223445677888999999997 5799999999999999999988765422
Q ss_pred H-HhhcccccccccchHHHHHHHHHcCchhhhcCCChHHHHHH
Q 027333 168 E-VIGVKLIEKERFPLLSAWMQEFAEAPVIKESWPPHEKLVTK 209 (225)
Q Consensus 168 ~-~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~ 209 (225)
. ..+.+. .+.||+|.+|+++|.++|++++++.........
T Consensus 166 ~~~~~~~~--~~~~p~l~~w~~~~~~rpa~~~~~~~~~~~~~~ 206 (213)
T PLN02378 166 GHFKSWSV--PESFPHVHNYMKTLFSLDSFEKTKTEEKYVISG 206 (213)
T ss_pred HHhcCCCc--hhHhHHHHHHHHHHhcCCCeecccCChHHHHHH
Confidence 1 111122 358999999999999999999999887665543
No 15
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=100.00 E-value=1.2e-31 Score=211.30 Aligned_cols=188 Identities=22% Similarity=0.320 Sum_probs=148.5
Q ss_pred CCChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhcCCCCCCCCCHHH
Q 027333 11 WSSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVDETWKQNPLLPEDPYE 90 (225)
Q Consensus 11 ~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~~~~~~~~l~p~~~~~ 90 (225)
..|||+++++++|+++||+|+.+.+++.+++++|+++||. |+||+|+++|.+|+||.+|++||+++++++.+. ++.+
T Consensus 71 g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~-GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~~L~--~~~e 147 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPE-GKVPVVKLDEKWVADSDVITQALEEKYPDPPLA--TPPE 147 (265)
T ss_pred CCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCC-CCCCEEEECCEEEecHHHHHHHHHHHCCCCCCC--CHHH
Confidence 3499999999999999999999999998888999999999 899999998899999999999999999987664 5677
Q ss_pred HHHHHHHHHHccchhhHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhcC-CCcccccCCCChhhhhHHHHHHHHHHHHH-
Q 027333 91 RARARFWAKFGDDKVLASIWNAFIKQGKEQEEAIGLAIETLKFLEEELK-GKRFFGGEKIGLPDLALGWLANLIGVFEE- 168 (225)
Q Consensus 91 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~-~~~fl~G~~~t~aD~~l~~~l~~~~~~~~- 168 (225)
++.++.++. ..+..++... ...+...+.+.+.++.||++|+ +++||+|+++|+||+++++.+.++.....
T Consensus 148 ra~i~~~l~-------~~~~~~~~~~-~~~~~~~~~l~~~l~~LE~~L~~~g~yl~Gd~~SlADi~l~p~L~~l~~~~~~ 219 (265)
T PLN02817 148 KASVGSKIF-------STFIGFLKSK-DPGDGTEQALLDELTSFDDYIKENGPFINGEKISAADLSLGPKLYHLEIALGH 219 (265)
T ss_pred HHHHHHHHH-------HHHHHHhccC-CcchHHHHHHHHHHHHHHHHHhcCCCeeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 888776542 2222232221 1122334567788999999997 47999999999999999999887754211
Q ss_pred HhhcccccccccchHHHHHHHHHcCchhhhcCCChHHHHHHHH
Q 027333 169 VIGVKLIEKERFPLLSAWMQEFAEAPVIKESWPPHEKLVTKFR 211 (225)
Q Consensus 169 ~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~ 211 (225)
..+.+. .+.+|+|.+|+++|.++|+|+++.+..++...-+.
T Consensus 220 ~~~~~i--~~~~P~L~~w~~ri~~rps~~~~~~~~~~~~~~~~ 260 (265)
T PLN02817 220 YKNWSV--PDSLPFVKSYMKNIFSMESFVKTRALPEDVIAGWR 260 (265)
T ss_pred hcCCCc--cccCHHHHHHHHHHhcchhHhhcCCCHHHHHHHhH
Confidence 112222 35899999999999999999999998777655443
No 16
>PTZ00057 glutathione s-transferase; Provisional
Probab=100.00 E-value=3.7e-32 Score=208.08 Aligned_cols=191 Identities=20% Similarity=0.175 Sum_probs=141.8
Q ss_pred CCCceEEeccCCChhhHHHHHHHHHcCCCceEEecCCCCCChhhh--------hhCCCCCcccEEEeCCeeeeehHHHHH
Q 027333 1 MAEEVKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLL--------QSNPVYKKVPVLIHNGKPISESLVILE 72 (225)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~--------~~~p~~g~vP~L~~~g~~l~es~~I~~ 72 (225)
|.++++||+++.++++++||++|+++|++|+.+.++. .. +++. +.||+ |+||+|++||.+|+||.||++
T Consensus 1 m~~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~-~~-~~~~~~~~~~~~~~nP~-g~vP~L~~~~~~l~eS~AI~~ 77 (205)
T PTZ00057 1 MAEEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGE-NG-DAFIEFKNFKKEKDTPF-EQVPILEMDNIIFAQSQAIVR 77 (205)
T ss_pred CCCceEEEecCCCcchHHHHHHHHHcCCCeEEEeccc-cc-hHHHHHHhccccCCCCC-CCCCEEEECCEEEecHHHHHH
Confidence 7778999999999999999999999999999997743 21 2332 47999 999999999999999999999
Q ss_pred HHHhhcCCCCCCCCCHHHHHHHHHHHHHccchhhHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhcCC--CcccccCCCC
Q 027333 73 YVDETWKQNPLLPEDPYERARARFWAKFGDDKVLASIWNAFIKQGKEQEEAIGLAIETLKFLEEELKG--KRFFGGEKIG 150 (225)
Q Consensus 73 yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~--~~fl~G~~~t 150 (225)
||+++++ +.+.+..+++.+..+..... .+...+.......+...+...+.+.+.+..||++|++ ++|++|+++|
T Consensus 78 YLa~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~Gd~~T 153 (205)
T PTZ00057 78 YLSKKYK---ICGESELNEFYADMIFCGVQ-DIHYKFNNTNLFKQNETTFLNEELPKWSGYFENILKKNHCNYFVGDNLT 153 (205)
T ss_pred HHHHHcC---CCCCCHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCccc
Confidence 9999997 44555544444443332221 1111111110001122244567888999999999964 3899999999
Q ss_pred hhhhhHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHcCchhhhcCCChH
Q 027333 151 LPDLALGWLANLIGVFEEVIGVKLIEKERFPLLSAWMQEFAEAPVIKESWPPHE 204 (225)
Q Consensus 151 ~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 204 (225)
+||+++++.+.++... .+ .+.+.||+|.+|+++|.++|+++++++++.
T Consensus 154 ~AD~~l~~~~~~~~~~---~~---~~l~~~P~l~~~~~r~~~~P~~k~y~~~~~ 201 (205)
T PTZ00057 154 YADLAVFNLYDDIETK---YP---NSLKNFPLLKAHNEFISNLPNIKNYISNRK 201 (205)
T ss_pred HHHHHHHHHHHHHHHh---Ch---hhhccChhHHHHHHHHHhChHHHHHHHhCC
Confidence 9999999987776421 12 224699999999999999999999987654
No 17
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-32 Score=207.94 Aligned_cols=197 Identities=25% Similarity=0.360 Sum_probs=168.0
Q ss_pred ceEEeccCCChhhHHHHHHHHHcCCCceEEecCCC---CCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhcC-
Q 027333 4 EVKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLS---NKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVDETWK- 79 (225)
Q Consensus 4 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~~~~~- 79 (225)
.++||++..||.++++.+++.++|++|+.+.++.. +.+++|+++||. |+||+|+|+|..++||.||+.||.++|.
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~-~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~ 80 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPL-GKVPALEDGGLTLWESHAILRYLAEKYGP 80 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcC-CCCCeEecCCeEEeeHHHHHHHHHHHcCC
Confidence 48999999999999999999999999999987765 778999999999 8999999999999999999999999996
Q ss_pred CCC-CCCCCHHHHHHHHHHHHHccchhhHHH--HHHHh-----c--CchhHHHHHHHHHHHHHHHHHhcCCCcccccCCC
Q 027333 80 QNP-LLPEDPYERARARFWAKFGDDKVLASI--WNAFI-----K--QGKEQEEAIGLAIETLKFLEEELKGKRFFGGEKI 149 (225)
Q Consensus 80 ~~~-l~p~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~-----~--~~~~~~~~~~~l~~~l~~le~~L~~~~fl~G~~~ 149 (225)
.+. ++|.+...++.+++|+.+..+.+.+.. ..++. . ......+....+.+.++.+|+.|.++.|+.|+++
T Consensus 81 ~~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~yl~g~~~ 160 (226)
T KOG0867|consen 81 LGGILLPKDLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKTQVYLAGDQL 160 (226)
T ss_pred CCcccCCcCHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHccCCcccCCcc
Confidence 334 999999999999999999888887763 22222 1 5556788899999999999999999999999999
Q ss_pred ChhhhhHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHcCchhhhcCCChHH
Q 027333 150 GLPDLALGWLANLIGVFEEVIGVKLIEKERFPLLSAWMQEFAEAPVIKESWPPHEK 205 (225)
Q Consensus 150 t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~ 205 (225)
|+||+.+.+.+..+.. .. - ......++|++.+|++++.++|.+++.......
T Consensus 161 tlADl~~~~~~~~~~~--~~-~-~~~~~~~~p~v~~W~~~~~~~P~~~e~~~~~~~ 212 (226)
T KOG0867|consen 161 TLADLSLASTLSQFQG--KF-A-TEKDFEKYPKVARWYERIQKRPAYEEANEKGAA 212 (226)
T ss_pred cHHHHHHhhHHHHHhH--hh-h-hhhhhhhChHHHHHHHHHHhCccHHHHHHHHHH
Confidence 9999999998887732 11 1 123357999999999999999998776654443
No 18
>PRK10387 glutaredoxin 2; Provisional
Probab=99.97 E-value=5.7e-31 Score=202.36 Aligned_cols=179 Identities=18% Similarity=0.189 Sum_probs=137.9
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEE-eCCeeeeehHHHHHHHHhhcCCCCC
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLI-HNGKPISESLVILEYVDETWKQNPL 83 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~-~~g~~l~es~~I~~yL~~~~~~~~l 83 (225)
|+||++..||+|++||++|+++||+|+.+.++..+... -...||. |+||+|+ +||..++||.+|++||+++|+++.+
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~-~~~~~p~-~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~~l 78 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEAT-PIRMIGQ-KQVPILQKDDGSYMPESLDIVHYIDELDGKPLL 78 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhh-HHHhcCC-cccceEEecCCeEecCHHHHHHHHHHhCCCccC
Confidence 58999999999999999999999999999887553222 2678998 8999995 7899999999999999999986545
Q ss_pred CCCCHHHHHHHHHHHHHccchhhHHHHHHHhc-------Cch---------------------hHHHHHHHHHHHHHHHH
Q 027333 84 LPEDPYERARARFWAKFGDDKVLASIWNAFIK-------QGK---------------------EQEEAIGLAIETLKFLE 135 (225)
Q Consensus 84 ~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-------~~~---------------------~~~~~~~~l~~~l~~le 135 (225)
.+ ..++.+++|+.+....+...+...+.. .+. ..+...+.+.+.|+.+|
T Consensus 79 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le 155 (210)
T PRK10387 79 TG---KRSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRALD 155 (210)
T ss_pred CC---cccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHHHH
Confidence 32 246788888877654443332221110 000 01345678889999999
Q ss_pred HhcCCCcccccCCCChhhhhHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHcCchhh
Q 027333 136 EELKGKRFFGGEKIGLPDLALGWLANLIGVFEEVIGVKLIEKERFPLLSAWMQEFAEAPVIK 197 (225)
Q Consensus 136 ~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~ 197 (225)
++|++ +||+|+++|+||+++++.+.++... + .++ .+|+|.+|++||.++|.+.
T Consensus 156 ~~L~~-~~l~G~~~s~ADi~l~~~l~~~~~~----~--~~~--~~p~l~~w~~r~~~r~~~~ 208 (210)
T PRK10387 156 PLIVK-PNAVNGELSTDDIHLFPILRNLTLV----K--GIE--WPPRVADYRDNMSKKTQVP 208 (210)
T ss_pred HHhcC-ccccCCCCCHHHHHHHHHHhcceee----c--CCC--CCHHHHHHHHHHHHHhCCC
Confidence 99976 9999999999999999998887432 1 122 4699999999999999864
No 19
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.96 E-value=6.4e-29 Score=190.57 Aligned_cols=177 Identities=18% Similarity=0.224 Sum_probs=133.1
Q ss_pred EEeccCCChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEE-eCCeeeeehHHHHHHHHhhcCCCCCC
Q 027333 6 KLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLI-HNGKPISESLVILEYVDETWKQNPLL 84 (225)
Q Consensus 6 ~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~-~~g~~l~es~~I~~yL~~~~~~~~l~ 84 (225)
+||++..||||+|||++|.++|++|+.+.++..+. ....+.||. |++|+|+ +||..++||.+|++||+++|+.+.+.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~-~~~~~~np~-g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~~~ 78 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDE-ETPIRMIGA-KQVPILQKDDGRAMPESLDIVAYFDKLDGEPLLT 78 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcc-hhHHHhcCC-CCcceEEeeCCeEeccHHHHHHHHHHhCCCccCC
Confidence 58999999999999999999999999988765432 234789998 8999998 88999999999999999999865443
Q ss_pred CCCHHHHHHHHHHHHHccchhhHHHHHHH-----------------hcCch-----------hHHHHHHHHHHHHHHHHH
Q 027333 85 PEDPYERARARFWAKFGDDKVLASIWNAF-----------------IKQGK-----------EQEEAIGLAIETLKFLEE 136 (225)
Q Consensus 85 p~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~-----------~~~~~~~~l~~~l~~le~ 136 (225)
|. .+..+++|+.+....+...+...+ ....+ ..++..+.+.+.|+.+|+
T Consensus 79 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~le~ 155 (209)
T TIGR02182 79 GK---VSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEELDK 155 (209)
T ss_pred CC---ChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHHHH
Confidence 32 356677777665444433222111 10000 013556788899999999
Q ss_pred hcCCCcccccCCCChhhhhHHHHHHHHHHHHHHhhcccccccccc-hHHHHHHHHHcCchhh
Q 027333 137 ELKGKRFFGGEKIGLPDLALGWLANLIGVFEEVIGVKLIEKERFP-LLSAWMQEFAEAPVIK 197 (225)
Q Consensus 137 ~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p-~l~~w~~~~~~~p~~~ 197 (225)
+|++++|++| ++|+||+++++.+.++... + .+ .+| +|.+|++||++++.+.
T Consensus 156 ~L~~~~~l~g-~~TiADi~l~~~l~~~~~~----~--~~---~~p~~l~~w~~Ri~ar~~~~ 207 (209)
T TIGR02182 156 LIDGPNAVNG-ELSEDDILVFPLLRNLTLV----A--GI---NWPSRVADYLDNMSKKSKVP 207 (209)
T ss_pred HHhCccccCC-CCCHHHHHHHHHhcCeeee----c--CC---CCChHHHHHHHHHHHHhCCC
Confidence 9999999965 6999999999988876421 1 11 356 9999999999988764
No 20
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-28 Score=184.75 Aligned_cols=194 Identities=20% Similarity=0.236 Sum_probs=160.4
Q ss_pred CCCceEEeccCCChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhcCC
Q 027333 1 MAEEVKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVDETWKQ 80 (225)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~~~~~~ 80 (225)
|. .++|+|+..+++++.+|+++++.|++|+.+.+...+.........|+ |++|+|..||..+.+|.||++||+++++
T Consensus 1 m~-~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pf-gqlP~l~vDg~~i~QS~AI~RyLArk~g- 77 (206)
T KOG1695|consen 1 MP-PYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPF-GQLPVLEVDGKKLVQSRAILRYLARKFG- 77 (206)
T ss_pred CC-ceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchhhhcccCCC-CCCCEEeECCEeeccHHHHHHHHHHHhC-
Confidence 65 79999999999999999999999999999999877643444566898 9999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHccchhhHHHHHHHhcC-----chhHH-HHHHHHHHHHHHHHHhcC--CCcccccCCCChh
Q 027333 81 NPLLPEDPYERARARFWAKFGDDKVLASIWNAFIKQ-----GKEQE-EAIGLAIETLKFLEEELK--GKRFFGGEKIGLP 152 (225)
Q Consensus 81 ~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~l~~~l~~le~~L~--~~~fl~G~~~t~a 152 (225)
+.+.++.+.+.++.+.+-+.+.....+...+... ++..+ .........+..+++.|+ ++.||+|+++|+|
T Consensus 78 --l~Gkt~~E~a~vD~i~d~~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgflvGd~lT~a 155 (206)
T KOG1695|consen 78 --LAGKTEEEEAWVDMIVDQFKDFRWEIFRQPYTAPEAGKSEEELDKLYLPAKPKYFKILEKILKKNKSGFLVGDKLTWA 155 (206)
T ss_pred --cCCCCHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhccchhhhhhhhccchHHHHHHHHHHHHhCCCCeeecCcccHH
Confidence 9999999999999999988887666454444321 11222 456677888999999997 5679999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHcCchhhhcCCChH
Q 027333 153 DLALGWLANLIGVFEEVIGVKLIEKERFPLLSAWMQEFAEAPVIKESWPPHE 204 (225)
Q Consensus 153 D~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 204 (225)
|+.++..+..+... ...+. .+.+|+|.++.++|.++|.++++++.+.
T Consensus 156 Dl~i~e~l~~l~~~---~~~~~--~~~~P~L~a~~~kv~~~p~ik~~i~~r~ 202 (206)
T KOG1695|consen 156 DLVIAEHLDTLEEL---LDPSA--LDHFPKLKAFKERVSSIPNIKKYLESRP 202 (206)
T ss_pred HHHHHHHHHHHHHh---cCchh--hccChHHHHHHHHHhcCchHHHHHhcCC
Confidence 99999988877542 13333 3488999999999999999999987654
No 21
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.95 E-value=9e-27 Score=175.04 Aligned_cols=202 Identities=20% Similarity=0.278 Sum_probs=151.4
Q ss_pred ceEEeccCCChhhHHHHHHHHHcCCCceEEecCCC---CCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhcCC
Q 027333 4 EVKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLS---NKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVDETWKQ 80 (225)
Q Consensus 4 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~~~~~~ 80 (225)
.++||+++.|--++|||++++++||+|+...|++. +..+||..+||. |.||||+++..+|+|+..|++|++++|-+
T Consensus 26 ~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~-gevPVl~~g~~II~d~tqIIdYvErtf~g 104 (325)
T KOG4420|consen 26 SLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPG-GEVPVLIHGDNIISDYTQIIDYVERTFTG 104 (325)
T ss_pred cceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCC-CCCceEecCCeecccHHHHHHHHHHhhcc
Confidence 38999999999999999999999999999999876 567999999998 99999999999999999999999999954
Q ss_pred -CCCCCCC-HHHHHHHHHHHHH-----ccc-----hh---------hHHHH---H--------HHh--------------
Q 027333 81 -NPLLPED-PYERARARFWAKF-----GDD-----KV---------LASIW---N--------AFI-------------- 114 (225)
Q Consensus 81 -~~l~p~~-~~~~a~~~~~~~~-----~~~-----~~---------~~~~~---~--------~~~-------------- 114 (225)
..|.|.- ..+..++...... +++ .+ .|... . ++.
T Consensus 105 er~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay~ 184 (325)
T KOG4420|consen 105 ERVLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAYL 184 (325)
T ss_pred cccccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHHH
Confidence 4677752 2222222221111 000 00 11111 0 000
Q ss_pred -------------cCchhHHHHHHHHHHHHHHHHHhcCC----CcccccCCCChhhhhHHHHHHHHHHHHHHhhcc--cc
Q 027333 115 -------------KQGKEQEEAIGLAIETLKFLEEELKG----KRFFGGEKIGLPDLALGWLANLIGVFEEVIGVK--LI 175 (225)
Q Consensus 115 -------------~~~~~~~~~~~~l~~~l~~le~~L~~----~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~--~~ 175 (225)
.+....++....+...|+.+|..|.+ ..||+|+.+|+||+.+.++|+++..+ |.+ ..
T Consensus 185 akqkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~L----g~e~~yw 260 (325)
T KOG4420|consen 185 AKQKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFL----GLEKKYW 260 (325)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHHHHc----ccHHHhc
Confidence 01122345566777788888888865 78999999999999999999998765 332 22
Q ss_pred cccccchHHHHHHHHHcCchhhhcCCChHHHHHHH
Q 027333 176 EKERFPLLSAWMQEFAEAPVIKESWPPHEKLVTKF 210 (225)
Q Consensus 176 ~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~ 210 (225)
...+.|||..|++|+++|++|++++.+..++.-+.
T Consensus 261 ~~gsrpnle~Yf~rvrrR~sf~kvlg~~fnilr~~ 295 (325)
T KOG4420|consen 261 EDGSRPNLESYFERVRRRFSFRKVLGDIFNILRFR 295 (325)
T ss_pred ccCCCccHHHHHHHHHhhhHHHHhhhhHHHHHHHH
Confidence 24589999999999999999999999988876643
No 22
>PLN02907 glutamate-tRNA ligase
Probab=99.92 E-value=4e-24 Score=187.66 Aligned_cols=158 Identities=17% Similarity=0.254 Sum_probs=130.7
Q ss_pred CCCceEEeccCCChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEE-eCCeeeeehHHHHHHHHhhcC
Q 027333 1 MAEEVKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLI-HNGKPISESLVILEYVDETWK 79 (225)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~-~~g~~l~es~~I~~yL~~~~~ 79 (225)
|+ ++||+.+.|+ +.++.++|++.|++|+.+. .+|. |+||+|+ +||..++||.+|++||++.++
T Consensus 1 ~~--~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~------------~~p~-GkVPvLv~ddG~~L~ES~AIl~YLa~~~p 64 (722)
T PLN02907 1 ME--AKLSFPPDSP-PLAVIAAAKVAGVPLTIDP------------SLKS-GSAPTLLFSSGEKLTGTNVLLRYIARSAS 64 (722)
T ss_pred Ce--EEEEECCCCC-hHHHHHHHHHcCCCcEEee------------cCCC-CCCcEEEECCCCEEECHHHHHHHHHHhCC
Confidence 76 8999998875 6779999999999999975 2577 8999999 588999999999999999998
Q ss_pred CCCCCCCCHHHHHHHHHHHHHccchhhHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhcCCCcccccCCCChhhhhHHHH
Q 027333 80 QNPLLPEDPYERARARFWAKFGDDKVLASIWNAFIKQGKEQEEAIGLAIETLKFLEEELKGKRFFGGEKIGLPDLALGWL 159 (225)
Q Consensus 80 ~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~ 159 (225)
...|+|.++.+++++++|+.+...... ...+.+.++.||.+|++++||+|+++|+||+++++.
T Consensus 65 ~~~L~p~d~~erAqV~qWL~~~~~~~~-----------------~~~l~~~L~~LE~~L~~rtYLvGd~lTLADIaL~~~ 127 (722)
T PLN02907 65 LPGFYGQDAFESSQVDEWLDYAPTFSS-----------------GSEFENACEYVDGYLASRTFLVGYSLTIADIAIWSG 127 (722)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhhccc-----------------HHHHHHHHHHHHHHhccCCeecCCCCCHHHHHHHHH
Confidence 888999999999999999998754211 023566799999999999999999999999999998
Q ss_pred HHHHHHHHHHhhcccccccccchHHHHHHHHHcCch
Q 027333 160 ANLIGVFEEVIGVKLIEKERFPLLSAWMQEFAEAPV 195 (225)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~ 195 (225)
+...... ..... ....||+|.+|+++|.++|+
T Consensus 128 L~~~~~~--~~~~~--~~~~yPnL~RW~erI~arPs 159 (722)
T PLN02907 128 LAGSGQR--WESLR--KSKKYQNLVRWFNSISAEYS 159 (722)
T ss_pred HHhhhhh--hhccc--ccccCHHHHHHHHHHHhCCC
Confidence 7654111 01211 14589999999999999999
No 23
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.90 E-value=2.3e-22 Score=147.23 Aligned_cols=194 Identities=23% Similarity=0.308 Sum_probs=156.1
Q ss_pred CCChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhcCCCCCCCCCHHH
Q 027333 11 WSSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVDETWKQNPLLPEDPYE 90 (225)
Q Consensus 11 ~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~~~~~~~~l~p~~~~~ 90 (225)
..||||+++.+.|+.+|++|.++.||+..+++||..+.|. |++|+|..|+..++||..|-++|+++++.+.+---.+.+
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~-~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~~~~~~~~E 97 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPG-GKPPVLKFDEKWVTDSDKIEEFLEEKLPPPKLPTLAPPE 97 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCC-CCCCeEEeCCceeccHHHHHHHHHHhcCCCCCcccCCHH
Confidence 3699999999999999999999999999999999999997 999999999999999999999999999866432211222
Q ss_pred HHHHHHHHHHccchhhHHHHHHHhc-CchhHHHHHHHHHHHHHHHHHhcCC---CcccccCCCChhhhhHHHHHHHHHHH
Q 027333 91 RARARFWAKFGDDKVLASIWNAFIK-QGKEQEEAIGLAIETLKFLEEELKG---KRFFGGEKIGLPDLALGWLANLIGVF 166 (225)
Q Consensus 91 ~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~le~~L~~---~~fl~G~~~t~aD~~l~~~l~~~~~~ 166 (225)
.+. +...++..+..++.. .++.-+.....+...|..||++|.. ++||.|+++|.||+.+.|-|+.+++.
T Consensus 98 ~as-------ag~diF~kF~~fi~ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDcsLlPKL~~i~va 170 (221)
T KOG1422|consen 98 SAS-------AGSDIFAKFSAFIKKSKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADCSLLPKLHHIKVA 170 (221)
T ss_pred HHh-------hHHHHHHHHHHHHhCchhhccchHHHHHHHHHHHHHHHhcCccCCccccCCeeeeehhhhchhHHHHHHH
Confidence 222 222334444444333 3334455677888889999999974 89999999999999999999999877
Q ss_pred HHHhhcccccccccchHHHHHHHHHcCchhhhcCCChHHHHHHHHHH
Q 027333 167 EEVIGVKLIEKERFPLLSAWMQEFAEAPVIKESWPPHEKLVTKFRAI 213 (225)
Q Consensus 167 ~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~ 213 (225)
...+.--.+ .+..+.+.+|++.+-++..|..+.++...+...+...
T Consensus 171 ~k~yk~~~I-P~~lt~V~rYl~~~ya~d~F~~tcp~d~ei~~~y~~~ 216 (221)
T KOG1422|consen 171 AKHYKNFEI-PASLTGVWRYLKNAYARDEFTNTCPADQEIILAYAPV 216 (221)
T ss_pred HHHhcCCCC-chhhhHHHHHHHHHHhHHHhhcCCchHHHHHHhhhhh
Confidence 665443233 4689999999999999999999999998888776643
No 24
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.84 E-value=1.2e-20 Score=121.11 Aligned_cols=74 Identities=31% Similarity=0.576 Sum_probs=70.8
Q ss_pred EeccCCChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhcCCC
Q 027333 7 LLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVDETWKQN 81 (225)
Q Consensus 7 Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~~~~~~~ 81 (225)
||++..||||+|+|++|+++||+|+.+.++..++.+++.+.||. |+||+|++||..++||.+|++||++.|+++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~-~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPK-GKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTT-SBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhccc-ccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 79999999999999999999999999999988878999999998 899999999999999999999999999864
No 25
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.83 E-value=1.8e-19 Score=136.66 Aligned_cols=178 Identities=21% Similarity=0.255 Sum_probs=130.5
Q ss_pred eEEeccC-------CChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhh
Q 027333 5 VKLLKTW-------SSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVDET 77 (225)
Q Consensus 5 ~~Ly~~~-------~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~~~ 77 (225)
+-||.++ .||||.++..+|+..+||||.+.-.+ ...++. |++|.++-+|..+.||..|..+|.+.
T Consensus 46 VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~-------~~rSr~-G~lPFIELNGe~iaDS~~I~~~L~~h 117 (281)
T KOG4244|consen 46 VYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSL-------KRRSRN-GTLPFIELNGEHIADSDLIEDRLRKH 117 (281)
T ss_pred EEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccc-------eeeccC-CCcceEEeCCeeccccHHHHHHHHHH
Confidence 4466554 69999999999999999999997643 234455 89999999999999999999999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHccchhhHHHHH----------------------------HH-----hc------Cc-
Q 027333 78 WKQNPLLPEDPYERARARFWAKFGDDKVLASIWN----------------------------AF-----IK------QG- 117 (225)
Q Consensus 78 ~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~----------------------------~~-----~~------~~- 117 (225)
+.-+..+ ++.++++.+.+...+++.+.-.+.. ++ .. ..
T Consensus 118 f~~~~~L--~~e~~a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r~~g~ 195 (281)
T KOG4244|consen 118 FKIPDDL--SAEQRAQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKRSTGA 195 (281)
T ss_pred cCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9744323 4456777766666555443332221 11 00 00
Q ss_pred ---hhHHHHHHHHHHHHHHHHHhcCCCcccccCCCChhhhhHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHcC
Q 027333 118 ---KEQEEAIGLAIETLKFLEEELKGKRFFGGEKIGLPDLALGWLANLIGVFEEVIGVKLIEKERFPLLSAWMQEFAEA 193 (225)
Q Consensus 118 ---~~~~~~~~~l~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~ 193 (225)
=..++..+.+.+.|..+++.|++++||+|+++|-+|+++|+.|..+.+ +......-+-.+.+|||.+|++||++.
T Consensus 196 IG~f~~~Ei~ell~rDlr~i~~~Lg~KkflfGdkit~~DatvFgqLa~v~Y-P~~~~i~d~le~d~p~l~eYceRIr~~ 273 (281)
T KOG4244|consen 196 IGDFESAEIDELLHRDLRAISDYLGDKKFLFGDKITPADATVFGQLAQVYY-PFRSHISDLLEGDFPNLLEYCERIRKE 273 (281)
T ss_pred ccCcCHHHHHHHHHHHHHHHHHHhCCCccccCCCCCcceeeehhhhhheec-cCCCcHHHHHhhhchHHHHHHHHHHHH
Confidence 123456777789999999999999999999999999999999998866 211111112257899999999999873
No 26
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.81 E-value=1.3e-19 Score=115.68 Aligned_cols=73 Identities=32% Similarity=0.449 Sum_probs=69.1
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhc
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVDETW 78 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~~~~ 78 (225)
|+||+.+.||+|++++++|+++|++|+.+.++..+..+++++.||. |++|+|+++|..++||.+|++||+++|
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPY-GTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 5899999999999999999999999999999988778899999999 899999999999999999999999874
No 27
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.81 E-value=1e-19 Score=119.33 Aligned_cols=70 Identities=31% Similarity=0.436 Sum_probs=66.3
Q ss_pred CCChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhcCCC
Q 027333 11 WSSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVDETWKQN 81 (225)
Q Consensus 11 ~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~~~~~~~ 81 (225)
..||||+++|++|+++||+|+.+.+++.+++++|.++||. |++|+|+++|.+++||.+|++||+++++.+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~-g~vPvL~~~~~~i~eS~~I~eYLde~~~~~ 89 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPG-TQPPFLLYNGEVKTDNNKIEEFLEETLCPP 89 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCC-CCCCEEEECCEEecCHHHHHHHHHHHccCC
Confidence 4699999999999999999999999999889999999998 999999999999999999999999998754
No 28
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.81 E-value=4e-19 Score=135.50 Aligned_cols=182 Identities=18% Similarity=0.297 Sum_probs=125.4
Q ss_pred ceEEeccCCChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHh-------
Q 027333 4 EVKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVDE------- 76 (225)
Q Consensus 4 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~~------- 76 (225)
+++||.+..||||.+||.+|.+.||+|++++|++..+.+ ++-+.. ++||+|..+|..+.||.+|+.-|..
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~e--Ik~Ssy-kKVPil~~~Geqm~dSsvIIs~laTyLq~~~q 166 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQE--IKWSSY-KKVPILLIRGEQMVDSSVIISLLATYLQDKRQ 166 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhhhh--cccccc-ccccEEEeccceechhHHHHHHHHHHhccCCC
Confidence 578999999999999999999999999999999874322 333454 8999999877789999999987633
Q ss_pred -------hcCCCCCCCC-------------------C----HHHHHHHHHHHHHccchhhHHHHH--------------H
Q 027333 77 -------TWKQNPLLPE-------------------D----PYERARARFWAKFGDDKVLASIWN--------------A 112 (225)
Q Consensus 77 -------~~~~~~l~p~-------------------~----~~~~a~~~~~~~~~~~~~~~~~~~--------------~ 112 (225)
.||.-..+-. + -..+..-+.|..|+++.+...+.+ +
T Consensus 167 ~l~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletFew 246 (370)
T KOG3029|consen 167 DLGEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETFEW 246 (370)
T ss_pred CHHHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHHHH
Confidence 2331000000 0 012334467777777665443332 1
Q ss_pred Hh--------------------------------cCchhHHHHHHHHHHHHHHHHHhc-CCCcccccCCCChhhhhHHHH
Q 027333 113 FI--------------------------------KQGKEQEEAIGLAIETLKFLEEEL-KGKRFFGGEKIGLPDLALGWL 159 (225)
Q Consensus 113 ~~--------------------------------~~~~~~~~~~~~l~~~l~~le~~L-~~~~fl~G~~~t~aD~~l~~~ 159 (225)
+. .........++.+.+.++.+-..| .+++|+.|++|++||+.+|++
T Consensus 247 f~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgknr~flGG~kPnLaDLsvfGv 326 (370)
T KOG3029|consen 247 FSQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGKNRPFLGGKKPNLADLSVFGV 326 (370)
T ss_pred HHHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCCCCCccCCCCCchhhhhhhhh
Confidence 10 011122234666667777777777 578999999999999999999
Q ss_pred HHHHHHHHHHhhcccccccccchHHHHHHHHHcC
Q 027333 160 ANLIGVFEEVIGVKLIEKERFPLLSAWMQEFAEA 193 (225)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~ 193 (225)
|+.+.....+- + .-...++..|+.+|++.
T Consensus 327 l~sm~gc~afk--d---~~q~t~I~eW~~rmeal 355 (370)
T KOG3029|consen 327 LRSMEGCQAFK--D---CLQNTSIGEWYYRMEAL 355 (370)
T ss_pred hhHhhhhhHHH--H---HHhcchHHHHHHHHHHH
Confidence 99887654431 1 22568999999999863
No 29
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.80 E-value=2.4e-19 Score=114.79 Aligned_cols=74 Identities=65% Similarity=1.116 Sum_probs=68.1
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhc
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVDETW 78 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~~~~ 78 (225)
|+||+++.||+|+++|++|+++|++|+.+.++...+.++|.+.||..|++|+|+++|.+++||.+|++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 58999999999999999999999999999998887788999999932799999999999999999999999864
No 30
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.80 E-value=2.1e-19 Score=114.48 Aligned_cols=70 Identities=26% Similarity=0.430 Sum_probs=64.8
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecCCC---CCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLS---NKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVD 75 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~ 75 (225)
.+||+++.||+++++|++|+++|++|+.+.++.. ++.++|.++||. |+||+|++||..++||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~-g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPT-GEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 4799999999999999999999999999998874 456789999999 899999999999999999999985
No 31
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.79 E-value=2.5e-18 Score=121.46 Aligned_cols=124 Identities=48% Similarity=0.776 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHccchhhHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhcCCCcccccCCCChhhhhHHHHHHHHHHHHH
Q 027333 89 YERARARFWAKFGDDKVLASIWNAFIKQGKEQEEAIGLAIETLKFLEEELKGKRFFGGEKIGLPDLALGWLANLIGVFEE 168 (225)
Q Consensus 89 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~ 168 (225)
.+++++++|+.+.++.+.+.+...+...++..+.....+.+.++.||++|++++|++|+++|+||+++++.+.++.....
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~~~~~~~~~~~ 81 (126)
T cd03185 2 YERAVARFWAAFIDDKLFPAGRKVLAAKGEEREKAKEEALEALKVLEEELGGKPFFGGDTIGYVDIALGSFLGWFRAYEE 81 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 46899999999999888888776665555556677889999999999999989999999999999999999988765433
Q ss_pred HhhcccccccccchHHHHHHHHHcCchhhhcCCChHHHHHHHHH
Q 027333 169 VIGVKLIEKERFPLLSAWMQEFAEAPVIKESWPPHEKLVTKFRA 212 (225)
Q Consensus 169 ~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~ 212 (225)
..+.+..+.+.+|++.+|+++|.++|+++++.+..+...+++++
T Consensus 82 ~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~ 125 (126)
T cd03185 82 VGGVKLLDEEKTPLLAAWAERFLELEAVKEVLPDRDKLVEFAKA 125 (126)
T ss_pred HcCccccCcccCchHHHHHHHHHhccHHHHhCCCHHHHHHHHHh
Confidence 32333222468999999999999999999999999888876654
No 32
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.79 E-value=6.4e-19 Score=113.60 Aligned_cols=73 Identities=22% Similarity=0.232 Sum_probs=65.9
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecCCCC-CChhhhhhCCCCCcccEEEe--CCeeeeehHHHHHHHHhhc
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSN-KSPLLLQSNPVYKKVPVLIH--NGKPISESLVILEYVDETW 78 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~--~g~~l~es~~I~~yL~~~~ 78 (225)
++||+.+.||+|++++++|.++||+|+.+.++..+ ..+++++.||. |++|+|++ +|..++||.+|++||+++|
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~-~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGK-VQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCC-CcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 79999999999999999999999999999987553 35789999998 89999996 4689999999999999875
No 33
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.78 E-value=4.5e-19 Score=113.12 Aligned_cols=73 Identities=11% Similarity=0.013 Sum_probs=66.9
Q ss_pred ceEEeccCCChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhh
Q 027333 4 EVKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVDET 77 (225)
Q Consensus 4 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~~~ 77 (225)
+++||+++.|++++++|++|+++|++|+.+.++..+..+++.+.||. |++|+|++||.+++||.+|++||+++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLF-GQLPCFKDGDLTLVQSNAILRHLGRK 73 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCC-CCCCEEEECCEEEEcHHHHHHHHhcC
Confidence 47999999999999999999999999999999876555678999999 89999999999999999999999863
No 34
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.78 E-value=1.2e-18 Score=110.54 Aligned_cols=69 Identities=33% Similarity=0.526 Sum_probs=64.6
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEEe-CCeeeeehHHHHHHH
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIH-NGKPISESLVILEYV 74 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~-~g~~l~es~~I~~yL 74 (225)
++||+++.||||+|++++|+++|++|+.+.++...+.+++.+.||. |+||+|++ ||..++||.+|++|+
T Consensus 1 ~~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~-~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 1 PILYSFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPK-GTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred CEEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCC-CCCCEEEECCCcEEecHHHHHHhh
Confidence 3799999999999999999999999999999988777899999998 89999997 489999999999996
No 35
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.78 E-value=1.3e-18 Score=111.33 Aligned_cols=71 Identities=30% Similarity=0.391 Sum_probs=65.5
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecCCC---CCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHh
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLS---NKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVDE 76 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~~ 76 (225)
|+||+++.||+|++++++|+++|++|+.+.+++. ...++|.+.||. |++|+|+++|..++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQ-HTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcC-CCCCEEEECCEEEEcHHHHHHHHhC
Confidence 5899999999999999999999999999999864 345899999999 8999999999999999999999974
No 36
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.77 E-value=2e-18 Score=111.07 Aligned_cols=72 Identities=32% Similarity=0.448 Sum_probs=66.4
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecCCC---CCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhh
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLS---NKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVDET 77 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~~~ 77 (225)
++||+++.||+|+++|++|+++|++|+.+.++.. +..++|.+.||. |++|+|+++|..++||.+|++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~-~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPF-GQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 7999999999999999999999999999988765 446789999999 89999999999999999999999863
No 37
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.76 E-value=3.7e-18 Score=109.83 Aligned_cols=73 Identities=27% Similarity=0.434 Sum_probs=66.6
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecCCCC---CChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhc
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSN---KSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVDETW 78 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~~~~ 78 (225)
++||+++.|+++++++++|+++|++|+.+.++..+ ..+++.+.||. |++|+|+++|.+++||.+|++||++++
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPF-GKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcC-CCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 58999999999999999999999999999998653 34689999999 899999999999999999999999864
No 38
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.75 E-value=8.1e-18 Score=109.61 Aligned_cols=73 Identities=26% Similarity=0.481 Sum_probs=66.6
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecCCC---CCChhhhhhCCCCCcccEEEeC---CeeeeehHHHHHHHHhhc
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLS---NKSPLLLQSNPVYKKVPVLIHN---GKPISESLVILEYVDETW 78 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~---g~~l~es~~I~~yL~~~~ 78 (225)
++||+++. |+|+++|++|+++|++|+.+.++.. ...++|.+.||. |++|+|+++ |..++||.+|++||++++
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~ 79 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPN-GRIPAIVDHNGTPLTVFESGAILLYLAEKY 79 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcC-CCCCEEEeCCCCceEEEcHHHHHHHHHHHh
Confidence 79999885 9999999999999999999999864 456889999998 899999986 899999999999999988
Q ss_pred C
Q 027333 79 K 79 (225)
Q Consensus 79 ~ 79 (225)
+
T Consensus 80 ~ 80 (81)
T cd03048 80 D 80 (81)
T ss_pred C
Confidence 6
No 39
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.75 E-value=6.2e-18 Score=107.90 Aligned_cols=70 Identities=30% Similarity=0.475 Sum_probs=64.6
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecCCC---CCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLS---NKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVD 75 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~ 75 (225)
++||+++.||+|++++++|+++|++|+.+.++.. +..++|.+.||. |++|+|+++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPN-GEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999864 356889999998 899999999999999999999984
No 40
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.74 E-value=7.5e-18 Score=107.54 Aligned_cols=70 Identities=29% Similarity=0.422 Sum_probs=65.1
Q ss_pred eEEeccCCChhhHHHHHHHHH--cCCCceEEecCCCCCChhhhhhCCCCCcccEEE-eCCeeeeehHHHHHHHH
Q 027333 5 VKLLKTWSSPFGLRAFWILKL--KGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLI-HNGKPISESLVILEYVD 75 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~--~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~-~~g~~l~es~~I~~yL~ 75 (225)
++||+++.||+|+++|++|++ +|++|+.+.++...+.+++.+.||. |++|+|+ +||..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPL-GKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCC-CCCCEEEECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 8999999999887777899999998 8999998 57899999999999985
No 41
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.74 E-value=4.8e-18 Score=108.14 Aligned_cols=71 Identities=24% Similarity=0.259 Sum_probs=63.9
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecCCCC-CChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHh
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSN-KSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVDE 76 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~~ 76 (225)
++||+++.|++|+++|++|+++|++|+.+.++... ....+.+.||. |++|+|+++|..++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPF-GQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcC-CCCCEEEECCEEEEecHHHHHHhhC
Confidence 58999999999999999999999999999988753 23458899999 8999999999999999999999974
No 42
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.74 E-value=9.7e-18 Score=107.00 Aligned_cols=70 Identities=29% Similarity=0.403 Sum_probs=64.0
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecCCC---CCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLS---NKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVD 75 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~ 75 (225)
++||+++.||+++++|++|+++|++|+.+.++.. ...++|.+.||. |++|+|+++|..++||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~-~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPN-GRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCC-CCCCEEEECCEEEECHHHHHHHhC
Confidence 5899999999999999999999999999988753 346789999999 899999999999999999999984
No 43
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.74 E-value=1.1e-17 Score=107.34 Aligned_cols=70 Identities=29% Similarity=0.388 Sum_probs=65.1
Q ss_pred EEeccCCChhhHHHHHHHHHcCCCceEEecCCC--CCChhhhhhCCCCCcccEEEe-CCeeeeehHHHHHHHHh
Q 027333 6 KLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLS--NKSPLLLQSNPVYKKVPVLIH-NGKPISESLVILEYVDE 76 (225)
Q Consensus 6 ~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~--~~~~~~~~~~p~~g~vP~L~~-~g~~l~es~~I~~yL~~ 76 (225)
+||+++.||+++++|++|+++|++|+.+.++.. ++.++|.++||. |++|+|++ ||..++||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~-~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPL-GKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCC-CCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 799999999999999999999999999999875 467899999999 99999996 58999999999999986
No 44
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.74 E-value=1.3e-17 Score=110.55 Aligned_cols=71 Identities=35% Similarity=0.567 Sum_probs=66.1
Q ss_pred ceEEeccCCChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEEeC-CeeeeehHHHHHHHH
Q 027333 4 EVKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHN-GKPISESLVILEYVD 75 (225)
Q Consensus 4 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~-g~~l~es~~I~~yL~ 75 (225)
.++||+.+.||+|++++++|+++|++|+.+.++.....+++.+.||. +++|+|+++ |..++||.+|++||+
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~-~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQ-GKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCC-CCcCEEEECCCCEEECHHHHHHhhC
Confidence 58999999999999999999999999999999887766789999998 899999976 899999999999985
No 45
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.74 E-value=8.6e-18 Score=106.67 Aligned_cols=70 Identities=29% Similarity=0.383 Sum_probs=61.6
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEEeC-CeeeeehHHHHHHHHh
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHN-GKPISESLVILEYVDE 76 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~-g~~l~es~~I~~yL~~ 76 (225)
|+||++..||||+|+|++|.++|++|+.+.++... .....+.||. +++|+|+++ |..++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~-~~~~~~~~~~-~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD-EATPIRMIGA-KQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc-hHHHHHhcCC-CccCEEEeCCCeEeehHHHHHHHHhC
Confidence 58999999999999999999999999999887653 2344678998 899999975 8999999999999974
No 46
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.73 E-value=2e-17 Score=106.42 Aligned_cols=73 Identities=27% Similarity=0.511 Sum_probs=66.1
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecCCC---CCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhcC
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLS---NKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVDETWK 79 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~~~~~ 79 (225)
++||+++. ++++++|++|+++|++|+.+.++.. .+.++|.+.||. +++|+|+++|..++||.+|++||+++++
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPL-GKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCC-CCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 58998876 6899999999999999999999864 457889999999 8999999999999999999999999874
No 47
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.73 E-value=1.3e-17 Score=106.61 Aligned_cols=70 Identities=34% Similarity=0.550 Sum_probs=63.5
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecCCC---CCChhhhhhCCCCCcccEEE-eCCeeeeehHHHHHHHH
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLS---NKSPLLLQSNPVYKKVPVLI-HNGKPISESLVILEYVD 75 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~-~~g~~l~es~~I~~yL~ 75 (225)
|+||+.+.||+|+++|++|.++|++|+.+.++.. ...+++.+.||. |++|+|+ +||..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPA-GTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCC-CCCCEEEeCCCCEEecHHHHHHHhC
Confidence 5899999999999999999999999999998764 345789999998 8999998 57889999999999985
No 48
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.72 E-value=2.8e-17 Score=106.00 Aligned_cols=73 Identities=29% Similarity=0.458 Sum_probs=65.2
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecCCC---CCChhhhhhCCCCCcccEEEeC-CeeeeehHHHHHHHHhhcC
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLS---NKSPLLLQSNPVYKKVPVLIHN-GKPISESLVILEYVDETWK 79 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~-g~~l~es~~I~~yL~~~~~ 79 (225)
|+||+++.| .++++|++|+++|++|+.+.++.. +..++|.+.||. |++|+|+++ |..++||.+|++||+++||
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~-~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPK-GQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCC-CCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 589999866 589999999999999999988875 346899999998 899999976 8999999999999999875
No 49
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.72 E-value=7.8e-17 Score=116.14 Aligned_cols=127 Identities=16% Similarity=0.162 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHccchhhHHHHHHHh-cCchhHHHHHHHHHHHHHHHHHhcCCCcccccCCCChhhhhHHHHHHHHHHHH
Q 027333 89 YERARARFWAKFGDDKVLASIWNAFI-KQGKEQEEAIGLAIETLKFLEEELKGKRFFGGEKIGLPDLALGWLANLIGVFE 167 (225)
Q Consensus 89 ~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~ 167 (225)
..++.+++|++|..+.+.+.+..... .+++..+.....+.+.|+.||++|++++|++|+++|+||+++++.+.++....
T Consensus 3 ~~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~~~~yl~Gd~~TlADi~l~~~l~~~~~~~ 82 (142)
T cd03190 3 ELRSEIDELNEWIYDNINNGVYKAGFATTQEAYDEAVDELFEALDRLEELLSDRRYLLGDRLTEADIRLFTTLIRFDAVY 82 (142)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHccCCeeeCCCccHHHHHHHHHHHHHHHHh
Confidence 35888999999999998887766543 45556677889999999999999998999999999999999999887653211
Q ss_pred -HHhhcccccccccchHHHHHHHHHcCchhhhcCCChHHHHHHHHHHHh
Q 027333 168 -EVIGVKLIEKERFPLLSAWMQEFAEAPVIKESWPPHEKLVTKFRAIRE 215 (225)
Q Consensus 168 -~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 215 (225)
..........+.||+|.+|+++|.++|++++++.....+.+++++++.
T Consensus 83 ~~~~~~~~~~~~~~P~L~~w~~r~~~~P~~k~~~~~~~~~~~~~~~~~~ 131 (142)
T cd03190 83 VQHFKCNLKRIRDYPNLWNYLRRLYQNPGVAETTNFDHIKQHYYGSHFP 131 (142)
T ss_pred hhhcccccchhhhCchHHHHHHHHhcCchHhhhcCHHHHHHHHHhhcCC
Confidence 100111111348999999999999999999999988888888888754
No 50
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.72 E-value=3.4e-17 Score=104.42 Aligned_cols=70 Identities=31% Similarity=0.528 Sum_probs=64.6
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecCCC---CCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLS---NKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVD 75 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~ 75 (225)
|+||++..|++++++|++|+++|++|+.+.++.. ...+++.+.||. |++|+|+++|..++||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQ-GLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999864 456789999998 899999999999999999999985
No 51
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.71 E-value=1.1e-16 Score=112.74 Aligned_cols=120 Identities=23% Similarity=0.384 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhcCC--CcccccCCCChhhhhHHHHHHHHHHHH
Q 027333 90 ERARARFWAKFGDDKVLASIWNAFIKQGKEQEEAIGLAIETLKFLEEELKG--KRFFGGEKIGLPDLALGWLANLIGVFE 167 (225)
Q Consensus 90 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~--~~fl~G~~~t~aD~~l~~~l~~~~~~~ 167 (225)
++++.+.|.++++ .+.+.+...+.. ++..++..+.+.+.|+.+|+.|++ ++|++|+++|+||+++++.+.++....
T Consensus 2 ~ra~~r~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~~~~~~~~~ 79 (124)
T cd03184 2 EKAQQKLLLERFS-KVVSAFYKLLGA-PSDREEKKAELRSALENLEEELTKRGTPFFGGDSPGMVDYMIWPWFERLEALK 79 (124)
T ss_pred hHHHHHHHHHHHh-hhhHHHHHHHhc-cccchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHhhHHHHHHHHHH
Confidence 4899999999997 555555565555 667778889999999999999975 899999999999999999888775443
Q ss_pred HHhhcccccccccchHHHHHHHHHcCchhhhcCCChHHHHHHHHH
Q 027333 168 EVIGVKLIEKERFPLLSAWMQEFAEAPVIKESWPPHEKLVTKFRA 212 (225)
Q Consensus 168 ~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~ 212 (225)
...+ .....+.+|+|.+|+++|.++|++++++.+.+.+.+.++.
T Consensus 80 ~~~~-~~~~~~~~p~l~~w~~r~~~~p~v~~~~~~~~~~~~~~~~ 123 (124)
T cd03184 80 LLLG-YEFPLDRFPKLKKWMDAMKEDPAVQAFYTDTEIHAEFLKS 123 (124)
T ss_pred hhcc-ccCCcccChHHHHHHHHhccChHHHHHhCCHHHHHHHHhc
Confidence 2212 1123468999999999999999999999999988888764
No 52
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.71 E-value=1.2e-16 Score=109.69 Aligned_cols=105 Identities=23% Similarity=0.200 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHccchhhHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhcCCCcccccCCCChhhhhHHHHHHHHHHHHH
Q 027333 89 YERARARFWAKFGDDKVLASIWNAFIKQGKEQEEAIGLAIETLKFLEEELKGKRFFGGEKIGLPDLALGWLANLIGVFEE 168 (225)
Q Consensus 89 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~ 168 (225)
.++++++.|+.++++.+.+.+..++...++..+.....+.+.|..||++|++++|++|+++|+||+++++.+.++..
T Consensus 2 ~~ra~~r~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~~--- 78 (107)
T cd03186 2 VARARSRLLMHRIEQDWYPLVDTIEKGRKKEAEKARKELRESLLALAPVFAHKPYFMSEEFSLVDCALAPLLWRLPA--- 78 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCcHHHHHHHHHHHHHHH---
Confidence 46899999999999988888777665545556778889999999999999999999999999999999998755432
Q ss_pred HhhcccccccccchHHHHHHHHHcCchhhhc
Q 027333 169 VIGVKLIEKERFPLLSAWMQEFAEAPVIKES 199 (225)
Q Consensus 169 ~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~ 199 (225)
.+.+.. ..+|+|.+|+++|.++|+++++
T Consensus 79 -~~~~~~--~~~p~l~~w~~~~~~rpa~~~~ 106 (107)
T cd03186 79 -LGIELP--KQAKPLKDYMERVFARDSFQKS 106 (107)
T ss_pred -cCCCCc--ccchHHHHHHHHHHCCHHHHHh
Confidence 243332 4899999999999999999875
No 53
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.71 E-value=3.9e-17 Score=105.30 Aligned_cols=72 Identities=19% Similarity=0.383 Sum_probs=62.8
Q ss_pred ceEEeccCCChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEEeC----CeeeeehHHHHHHHHhhc
Q 027333 4 EVKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHN----GKPISESLVILEYVDETW 78 (225)
Q Consensus 4 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~----g~~l~es~~I~~yL~~~~ 78 (225)
+++||+.+.||||+++|++|.++||+|+.+.+++... .+ .+.||. +++|+|+++ |.+++||.+|++||++..
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~~-~~-~~~~~~-~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVSR-KE-IKWSSY-KKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchhH-HH-HHHhCC-CccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 4899999999999999999999999999999876432 23 467998 899999954 789999999999999874
No 54
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2.2e-16 Score=112.79 Aligned_cols=179 Identities=18% Similarity=0.241 Sum_probs=124.3
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEE-eCCeeeeehHHHHHHHHhhcCCCCC
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLI-HNGKPISESLVILEYVDETWKQNPL 83 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~-~~g~~l~es~~I~~yL~~~~~~~~l 83 (225)
|+||-+.+||||.|+|+++..+|||++.+....++......-+. . ++||+|+ +||..+.||..|++|+++..+++-+
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~rmiG-~-KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~~l 78 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPIRMIG-Q-KQVPILQKEDGRAMPESLDIVHYVDELDGKPLL 78 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccChhhhhc-c-cccceEEccccccchhhhHHHHHHHHhcCchhh
Confidence 58999999999999999999999999999876654333223332 3 6899999 7899999999999999999875433
Q ss_pred CCCCHHHHHHHHHHHHHccchhhHHHHH-----------------HHhcCch-----------hHHHHHHHHHHHHHHHH
Q 027333 84 LPEDPYERARARFWAKFGDDKVLASIWN-----------------AFIKQGK-----------EQEEAIGLAIETLKFLE 135 (225)
Q Consensus 84 ~p~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~-----------~~~~~~~~l~~~l~~le 135 (225)
-+. -+..++.|+.-+.......+.+ +|....+ .-.....++...|..++
T Consensus 79 t~~---~~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~l~ 155 (215)
T COG2999 79 TGK---VRPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLRALD 155 (215)
T ss_pred ccC---cCHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHHHHH
Confidence 222 2455666766554443333322 3332111 11334677778888888
Q ss_pred HhcCCCcccccCCCChhhhhHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHcCchhh
Q 027333 136 EELKGKRFFGGEKIGLPDLALGWLANLIGVFEEVIGVKLIEKERFPLLSAWMQEFAEAPVIK 197 (225)
Q Consensus 136 ~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~ 197 (225)
..+.+..=+- ..+|.-|+.+||+|+++... .|..+. .++..|+.+|.+...+.
T Consensus 156 ~Li~~~s~~n-~~l~~ddi~vFplLRnlt~v---~gi~wp-----s~v~dy~~~msektqV~ 208 (215)
T COG2999 156 KLIVGPSAVN-GELSEDDILVFPLLRNLTLV---AGIQWP-----SRVADYRDNMSEKTQVN 208 (215)
T ss_pred HHhcCcchhc-cccchhhhhhhHHhccceec---ccCCCc-----HHHHHHHHHHHHhhCcc
Confidence 8886654233 45999999999999887432 243332 48899999998865543
No 55
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.70 E-value=2.3e-16 Score=109.53 Aligned_cols=110 Identities=20% Similarity=0.236 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHHccchhhHHHHHHHhc---CchhHHHHHHHHHHHHHHHHHhcCCCcccccCCCChhhhhHHHHHHHH
Q 027333 87 DPYERARARFWAKFGDDKVLASIWNAFIK---QGKEQEEAIGLAIETLKFLEEELKGKRFFGGEKIGLPDLALGWLANLI 163 (225)
Q Consensus 87 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~ 163 (225)
++..++++++|+.+.+..+.+.+...... ..+..+...+.+.+.++.+|++|++++|++|+++|+||+++++.+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~le~~L~~~~yl~Gd~~tlADi~l~~~l~~~ 82 (115)
T cd03196 3 DPAALKEMLALIAENDNEFKHHLDRYKYADRYPEESEEEYRQQAEAFLKDLEARLQQHSYLLGDKPSLADWAIFPFVRQF 82 (115)
T ss_pred chHHHHHHHHHHHHcchhhHHHHHhccchhhcCcccHHHHHHHHHHHHHHHHHHHccCCccCCCCccHHHHHHHHHHHHH
Confidence 67899999999999999998887764332 222467778999999999999999999999999999999999987665
Q ss_pred HHHHHHhhcccccccccchHHHHHHHHHcCchhhhcC
Q 027333 164 GVFEEVIGVKLIEKERFPLLSAWMQEFAEAPVIKESW 200 (225)
Q Consensus 164 ~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~ 200 (225)
... ....++.+++|+|.+|+++|.++|++++++
T Consensus 83 ~~~----~~~~~~~~~~P~L~~w~~r~~~rpa~~~~~ 115 (115)
T cd03196 83 AHV----DPKWFDQSPYPRLRRWLNGFLASPLFSKIM 115 (115)
T ss_pred HHh----hhcccCcccCHHHHHHHHHHHcChHHHhhC
Confidence 322 111222469999999999999999998753
No 56
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.70 E-value=7.9e-17 Score=104.94 Aligned_cols=73 Identities=15% Similarity=0.163 Sum_probs=62.1
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecCCCCC----Chhhhh-----hCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSNK----SPLLLQ-----SNPVYKKVPVLIHNGKPISESLVILEYVD 75 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~----~~~~~~-----~~p~~g~vP~L~~~g~~l~es~~I~~yL~ 75 (225)
.+|||+..++.|+++|++|+++||+|+.+.+++... .+++.. .+|+ |+||+|++||.+++||.||++||+
T Consensus 1 ~~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~-g~vP~L~~~g~~l~ES~AIl~YLa 79 (82)
T cd03075 1 PTLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDF-PNLPYYIDGDVKLTQSNAILRYIA 79 (82)
T ss_pred CEEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcC-CCCCEEEECCEEEeehHHHHHHHh
Confidence 379999999999999999999999999999987531 234442 2298 899999999999999999999999
Q ss_pred hhc
Q 027333 76 ETW 78 (225)
Q Consensus 76 ~~~ 78 (225)
+++
T Consensus 80 ~~~ 82 (82)
T cd03075 80 RKH 82 (82)
T ss_pred hcC
Confidence 864
No 57
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.69 E-value=1.1e-16 Score=103.51 Aligned_cols=72 Identities=18% Similarity=0.216 Sum_probs=62.5
Q ss_pred ceEEeccCCChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhC-----CCCCcccEEEeCCeeeeehHHHHHHHHhhc
Q 027333 4 EVKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSN-----PVYKKVPVLIHNGKPISESLVILEYVDETW 78 (225)
Q Consensus 4 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~-----p~~g~vP~L~~~g~~l~es~~I~~yL~~~~ 78 (225)
+++||+++.|+.++++|++|+++|++|+.+.++.. +++.+.+ |. |++|+|++||.+++||.||++||++++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~---~~~~~~~~~~~~~~-g~vP~L~~~g~~l~ES~AI~~YL~~~~ 76 (79)
T cd03077 1 KPVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA---EDLEKLKKDGSLMF-QQVPMVEIDGMKLVQTRAILNYIAGKY 76 (79)
T ss_pred CCEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH---HHHHhhccccCCCC-CCCCEEEECCEEEeeHHHHHHHHHHHc
Confidence 36899999999999999999999999999988752 3333333 57 899999999999999999999999988
Q ss_pred C
Q 027333 79 K 79 (225)
Q Consensus 79 ~ 79 (225)
+
T Consensus 77 ~ 77 (79)
T cd03077 77 N 77 (79)
T ss_pred C
Confidence 6
No 58
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.69 E-value=1.3e-16 Score=102.30 Aligned_cols=67 Identities=25% Similarity=0.448 Sum_probs=60.9
Q ss_pred eEEeccC-------CChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhh
Q 027333 5 VKLLKTW-------SSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVDET 77 (225)
Q Consensus 5 ~~Ly~~~-------~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~~~ 77 (225)
++||+++ .||+|++++++|+++|++|+.+.++. .+.||. |++|+|+++|..++||.+|++||+++
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~-------~~~~p~-g~vPvl~~~g~~l~eS~~I~~yL~~~ 73 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL-------AKRSPK-GKLPFIELNGEKIADSELIIDHLEEK 73 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc-------ccCCCC-CCCCEEEECCEEEcCHHHHHHHHHHH
Confidence 6899888 68999999999999999999998764 267898 89999999999999999999999998
Q ss_pred cC
Q 027333 78 WK 79 (225)
Q Consensus 78 ~~ 79 (225)
|+
T Consensus 74 ~~ 75 (75)
T cd03080 74 YG 75 (75)
T ss_pred cC
Confidence 74
No 59
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.69 E-value=8.8e-17 Score=101.54 Aligned_cols=65 Identities=43% Similarity=0.649 Sum_probs=56.1
Q ss_pred CChhhHHHHHHHHHcCCCceEEecCC----CCCChhhhhhCCCCCcccEEEe-CCeeeeehHHHHHHHHhh
Q 027333 12 SSPFGLRAFWILKLKGVQFDFIDEDL----SNKSPLLLQSNPVYKKVPVLIH-NGKPISESLVILEYVDET 77 (225)
Q Consensus 12 ~sp~~~~vr~~l~~~gi~~~~~~v~~----~~~~~~~~~~~p~~g~vP~L~~-~g~~l~es~~I~~yL~~~ 77 (225)
+|||++|++++|+++|++|+...+.. ..+.++|.+.||. |+||+|++ +|.++.||.+|++||++.
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~-~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPR-GKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT--SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcC-eEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 59999999999999999999988843 2455899999999 89999996 789999999999999873
No 60
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.67 E-value=3.3e-16 Score=100.56 Aligned_cols=71 Identities=32% Similarity=0.440 Sum_probs=58.8
Q ss_pred EEeccCCChhhHHHHHHHHHcCCCceEEecCCC---CCChhhhhhCCCCCcccEEEeC-CeeeeehHHHHHHHHh
Q 027333 6 KLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLS---NKSPLLLQSNPVYKKVPVLIHN-GKPISESLVILEYVDE 76 (225)
Q Consensus 6 ~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~-g~~l~es~~I~~yL~~ 76 (225)
+|++++.+++++++|++|+++|++|+.+.++.. ++.++|.+.||..|++|+|+++ |..++||.||++||++
T Consensus 2 ~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 2 TLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 444455555999999999999999999999874 3348999999952699999998 9999999999999985
No 61
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.66 E-value=3e-16 Score=102.87 Aligned_cols=67 Identities=25% Similarity=0.408 Sum_probs=58.7
Q ss_pred CCChhhHHHHHHHHHcCCCceEEecCCCCC---ChhhhhhCCCCCcccEEEeC-CeeeeehHHHHHHHHhhcC
Q 027333 11 WSSPFGLRAFWILKLKGVQFDFIDEDLSNK---SPLLLQSNPVYKKVPVLIHN-GKPISESLVILEYVDETWK 79 (225)
Q Consensus 11 ~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~---~~~~~~~~p~~g~vP~L~~~-g~~l~es~~I~~yL~~~~~ 79 (225)
.+||+|+++|++|.++|++|+.+.++.... ..++ +.||. |++|+|+++ |..++||.+|++||+++||
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~-~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGF-YTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCC-ceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 679999999999999999999999886532 2334 78998 899999988 8999999999999999875
No 62
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.65 E-value=7e-16 Score=106.88 Aligned_cols=104 Identities=20% Similarity=0.339 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHhcC---------chhHHHHHHHHHHHHHHHHHhcCCCcccccCCCChhhhhHHHHH
Q 027333 90 ERARARFWAKFGDDKVLASIWNAFIKQ---------GKEQEEAIGLAIETLKFLEEELKGKRFFGGEKIGLPDLALGWLA 160 (225)
Q Consensus 90 ~~a~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l 160 (225)
+++++++|+.+..+.+.+.+..++... +...+...+.+.+.++.+|+.|++++||+|+++|+|||++++.+
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aDi~~~~~~ 81 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLFYPARWATDEAAQEEVKAAARERLAARLAYLDAQLAGGPYLLGDRFSVADAYLFVVL 81 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhcccccccccChhhHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCcchHHHHHHHHH
Confidence 478999999999988888776544321 22245567889999999999999899999999999999999988
Q ss_pred HHHHHHHHHhhcccccccccchHHHHHHHHHcCchhhhcC
Q 027333 161 NLIGVFEEVIGVKLIEKERFPLLSAWMQEFAEAPVIKESW 200 (225)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~ 200 (225)
.++... + .+.+.+|+|.+|+++|.++|.+++++
T Consensus 82 ~~~~~~----~---~~~~~~p~l~~w~~~~~~~p~~k~~~ 114 (114)
T cd03188 82 RWAPGV----G---LDLSDWPNLAAYLARVAARPAVQAAL 114 (114)
T ss_pred HHHhhc----C---CChhhChHHHHHHHHHHhCHHhHhhC
Confidence 876431 2 22358999999999999999999863
No 63
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=3.3e-16 Score=119.53 Aligned_cols=211 Identities=19% Similarity=0.271 Sum_probs=151.6
Q ss_pred ceEEeccCCChhhHHHHHHHHHcCCC--ceEEecCC--CCCChh----------------------hhhhCCCC---Ccc
Q 027333 4 EVKLLKTWSSPFGLRAFWILKLKGVQ--FDFIDEDL--SNKSPL----------------------LLQSNPVY---KKV 54 (225)
Q Consensus 4 ~~~Ly~~~~sp~~~~vr~~l~~~gi~--~~~~~v~~--~~~~~~----------------------~~~~~p~~---g~v 54 (225)
++.||.+-.||+++|..++=+++|++ ..+..|++ ..+... |....|.+ -.|
T Consensus 51 RYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvTV 130 (324)
T COG0435 51 RYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVTV 130 (324)
T ss_pred eEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCceeE
Confidence 57899999999999999999999996 22222222 111111 12223321 258
Q ss_pred cEEEeC--C-eeeeehHHHHHHHHhhcC-----CCCCCCCCHHHHHHHHHHHHHccchhhHHHHH-HHhcCchhHHHHHH
Q 027333 55 PVLIHN--G-KPISESLVILEYVDETWK-----QNPLLPEDPYERARARFWAKFGDDKVLASIWN-AFIKQGKEQEEAIG 125 (225)
Q Consensus 55 P~L~~~--g-~~l~es~~I~~yL~~~~~-----~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 125 (225)
|||-|. . .+-.||..|++-+...|. ...|+|.. .+.+++.+.+++-+.+...+.. -|...++.-++...
T Consensus 131 PVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~--Lr~eId~~n~~Iy~~vNNGVYk~GFA~tq~aYeea~~ 208 (324)
T COG0435 131 PVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEA--LRTEIDELNKWIYDTVNNGVYKAGFATTQEAYEEAVK 208 (324)
T ss_pred EEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHH--HHHHHHHHHhhhcccccCceeeecccchHHHHHHHHH
Confidence 999873 2 456799999998876653 23588875 4889999888886665444333 23445667788889
Q ss_pred HHHHHHHHHHHhcCCCcccccCCCChhhhhHHHHHHHHHH-HHHHhhcccccccccchHHHHHHHHHcCchhhhcCCChH
Q 027333 126 LAIETLKFLEEELKGKRFFGGEKIGLPDLALGWLANLIGV-FEEVIGVKLIEKERFPLLSAWMQEFAEAPVIKESWPPHE 204 (225)
Q Consensus 126 ~l~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~-~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 204 (225)
.+-+.|+.||..|+++.||+|+++|-||+-+|+.|-++.. .-.++....-....||||..|...+-+.|.|.++.. .+
T Consensus 209 ~lF~~Ld~lE~~L~~~ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKCN~~rI~dypnL~~yLr~LYq~pg~~~T~d-f~ 287 (324)
T COG0435 209 KLFEALDKLEQILSERRYLTGDQLTEADIRLFTTLVRFDPVYVGHFKCNLRRIRDYPNLWGYLRDLYQLPGFAETVD-FD 287 (324)
T ss_pred HHHHHHHHHHHHhhcCeeeccccchHhhhhhhheeEeecceEEeeeecccchhhcCchHHHHHHHHhcCcccccccc-hh
Confidence 9999999999999999999999999999999998777641 111123333223469999999999999999999886 77
Q ss_pred HHHHHHHHHHhHH
Q 027333 205 KLVTKFRAIREPY 217 (225)
Q Consensus 205 ~~~~~~~~~~~~~ 217 (225)
.++..+-.+....
T Consensus 288 hIK~hYyrSh~~I 300 (324)
T COG0435 288 HIKLHYYRSHTTI 300 (324)
T ss_pred Hhhhhheeccccc
Confidence 7777776665543
No 64
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.65 E-value=1e-15 Score=97.46 Aligned_cols=67 Identities=33% Similarity=0.482 Sum_probs=60.5
Q ss_pred eccCCChhhHHHHHHHHHcCCCceEEecCCCC--CChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 027333 8 LKTWSSPFGLRAFWILKLKGVQFDFIDEDLSN--KSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVD 75 (225)
Q Consensus 8 y~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~--~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~ 75 (225)
-....||++++++++|+++|++|+.+.++..+ ..++|.+.||. |++|+|+++|.+++||.+|++||+
T Consensus 5 ~~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 5 GNKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPT-GKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred cCCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCC-CcCCEEEECCEEEEcHHHHHHHhC
Confidence 35678999999999999999999999998753 45789999999 999999999999999999999984
No 65
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.63 E-value=1.8e-15 Score=95.27 Aligned_cols=70 Identities=39% Similarity=0.547 Sum_probs=63.1
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecCCCCCCh-hhhhhCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSNKSP-LLLQSNPVYKKVPVLIHNGKPISESLVILEYVD 75 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~-~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~ 75 (225)
++||+++.||+|++++++|+++|++|+.+.++...... ++.+.+|. +++|+|+++|..++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPL-GKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 58999999999999999999999999999998764333 48889998 899999999999999999999984
No 66
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1e-15 Score=115.81 Aligned_cols=212 Identities=20% Similarity=0.297 Sum_probs=150.7
Q ss_pred ceEEeccCCChhhHHHHHHHHHcCCC----ceEEecCCCCCChhhh------------------------------hhCC
Q 027333 4 EVKLLKTWSSPFGLRAFWILKLKGVQ----FDFIDEDLSNKSPLLL------------------------------QSNP 49 (225)
Q Consensus 4 ~~~Ly~~~~sp~~~~vr~~l~~~gi~----~~~~~v~~~~~~~~~~------------------------------~~~p 49 (225)
++-||..-.|||++|..+.++.+|++ +..+.--.+++...|. ..+|
T Consensus 37 ryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~p 116 (319)
T KOG2903|consen 37 RYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIASP 116 (319)
T ss_pred eEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcCC
Confidence 57899999999999999999999985 2222110111111111 1223
Q ss_pred CC---CcccEEEeC---CeeeeehHHHHHHHH---hhc------CCCCCCCCCHHHHHHHHHHHHHccchhhHHHHH-HH
Q 027333 50 VY---KKVPVLIHN---GKPISESLVILEYVD---ETW------KQNPLLPEDPYERARARFWAKFGDDKVLASIWN-AF 113 (225)
Q Consensus 50 ~~---g~vP~L~~~---g~~l~es~~I~~yL~---~~~------~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ 113 (225)
.+ -.||||=|- ..+-.||..|++.+- ..+ +.-.|+|.+ .+++++.|.+|+-+.+...+.. -|
T Consensus 117 ~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~--L~~~Ide~N~wvy~~INNGVYk~GF 194 (319)
T KOG2903|consen 117 NYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSS--LRAQIDETNSWVYDKINNGVYKCGF 194 (319)
T ss_pred CCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHH--HHHHHhhhhceecccccCceeeecc
Confidence 11 259999863 356689999999998 322 233577765 4999999999987776554433 34
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHhcCCCc--ccccCCCChhhhhHHHHHHHHH-HHHHHhhcc--cccccccchHHHHHH
Q 027333 114 IKQGKEQEEAIGLAIETLKFLEEELKGKR--FFGGEKIGLPDLALGWLANLIG-VFEEVIGVK--LIEKERFPLLSAWMQ 188 (225)
Q Consensus 114 ~~~~~~~~~~~~~l~~~l~~le~~L~~~~--fl~G~~~t~aD~~l~~~l~~~~-~~~~~~~~~--~~~~~~~p~l~~w~~ 188 (225)
....+.-+....++-+.|+.+|+.|+++. |++|+++|-||+.+++.+.++. +...++... .+ +++||+|..|.+
T Consensus 195 A~~~e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD~VY~~hFKCn~~~i-r~~Yp~l~~~lk 273 (319)
T KOG2903|consen 195 AEKQEAYEEEVNQLFEALDRCEDVLGKNRKYFLCGDTLTEADIRLYTTIIRFDEVYVQHFKCNKKTI-RDEYPNLHNWLK 273 (319)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHhcccceEeeccccchhheeeeeeEEeehhhhheeeecchhhh-hccCcHHHHHHH
Confidence 44666778888999999999999998766 9999999999999999877664 222222221 22 469999999999
Q ss_pred HHHc-CchhhhcCCChHHHHHHHHHHHhHHHH
Q 027333 189 EFAE-APVIKESWPPHEKLVTKFRAIREPYVA 219 (225)
Q Consensus 189 ~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
++-+ .|+|+.+.. ++.+...+-.+..+..+
T Consensus 274 ~iY~~~~~~~~Ttd-~~hIk~~Y~~S~~~iNp 304 (319)
T KOG2903|consen 274 NIYWNIPGFSSTTD-FNHIKLHYYRSHPRINP 304 (319)
T ss_pred HHHhhccchhhccc-hhHHhhhhccccCccCc
Confidence 9999 999998876 77787777777655443
No 67
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.60 E-value=4.6e-15 Score=94.29 Aligned_cols=64 Identities=27% Similarity=0.402 Sum_probs=57.2
Q ss_pred EEeccC-------CChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhh
Q 027333 6 KLLKTW-------SSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVDET 77 (225)
Q Consensus 6 ~Ly~~~-------~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~~~ 77 (225)
+||.++ .||+|++++++|+++||+|+.+.++... .||. |++|+|+++|..++||.+|++||+++
T Consensus 2 ~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~-------~~p~-g~vP~l~~~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 2 ELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNPW-------RSPT-GKLPFLELNGEKIADSEKIIEYLKKK 72 (72)
T ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCcc-------cCCC-cccCEEEECCEEEcCHHHHHHHHhhC
Confidence 577666 8999999999999999999999987532 7898 89999999999999999999999874
No 68
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.60 E-value=1.3e-14 Score=101.31 Aligned_cols=103 Identities=20% Similarity=0.367 Sum_probs=80.9
Q ss_pred CCCHHHHHHHHHHHHHccchhhHHHHHH-Hh---cC-----------chhHHHHHHHHHHHHHHHHHhcCCCcccccCCC
Q 027333 85 PEDPYERARARFWAKFGDDKVLASIWNA-FI---KQ-----------GKEQEEAIGLAIETLKFLEEELKGKRFFGGEKI 149 (225)
Q Consensus 85 p~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~---~~-----------~~~~~~~~~~l~~~l~~le~~L~~~~fl~G~~~ 149 (225)
|.++.+++++++|+.+..+.+.+.+... +. .. +...+.....+.+.|+.||++|++++|++|+++
T Consensus 2 ~~~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~ 81 (119)
T cd03189 2 PPDTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLAKKGYFVGDKL 81 (119)
T ss_pred CCCHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHccCCCCCCCCC
Confidence 5688899999999999988888875432 21 11 112234567889999999999999999999999
Q ss_pred ChhhhhHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHcCc
Q 027333 150 GLPDLALGWLANLIGVFEEVIGVKLIEKERFPLLSAWMQEFAEAP 194 (225)
Q Consensus 150 t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p 194 (225)
|+||+++++.+.++... +. ..+.+|+|.+|++++.++|
T Consensus 82 t~ADi~l~~~~~~~~~~----~~---~~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 82 TAADIMMSFPLEAALAR----GP---LLEKYPNIAAYLERIEARP 119 (119)
T ss_pred CHHHHHHHHHHHHHHHc----Cc---ccccCchHHHHHHHHhcCC
Confidence 99999999988776432 22 2458999999999999986
No 69
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=99.59 E-value=2.4e-14 Score=100.91 Aligned_cols=109 Identities=13% Similarity=0.230 Sum_probs=84.9
Q ss_pred ccchhhHHHHHHHhc-CchhHHHHHHHHHHHHHHHHHhcCC----------------CcccccCCCChhhhhHHHHHHHH
Q 027333 101 GDDKVLASIWNAFIK-QGKEQEEAIGLAIETLKFLEEELKG----------------KRFFGGEKIGLPDLALGWLANLI 163 (225)
Q Consensus 101 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~le~~L~~----------------~~fl~G~~~t~aD~~l~~~l~~~ 163 (225)
..+.+++.+..++.+ +++..+...+.+.+.|+.||.+|++ ++|++|+++|+|||++++.+.++
T Consensus 7 ~~~~~f~~~~~~~~~~~~~~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~ 86 (134)
T cd03198 7 AGEDIFAKFSAYIKNSNPALNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIV 86 (134)
T ss_pred hHHHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 334556666666655 4455677889999999999999976 77999999999999999998877
Q ss_pred HHHHHH-hhcccccccccchHHHHHHHHHcCchhhhcCCChHHHHHHHH
Q 027333 164 GVFEEV-IGVKLIEKERFPLLSAWMQEFAEAPVIKESWPPHEKLVTKFR 211 (225)
Q Consensus 164 ~~~~~~-~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~ 211 (225)
...... .+... .+.+|+|.+|+++|.++|+|++++...+.+...++
T Consensus 87 ~~~~~~~~g~~i--~~~~P~L~aw~~ri~aRPsfk~t~~~~~~i~~~~~ 133 (134)
T cd03198 87 KVVAKKYRNFEI--PADLTGLWRYLKNAYQREEFTNTCPADQEIELAYK 133 (134)
T ss_pred HHHHHhhcCCCc--cccCHHHHHHHHHHHCCHHHHHHcCCHHHHHHHhc
Confidence 543211 13332 36899999999999999999999998888776553
No 70
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.59 E-value=2.1e-14 Score=99.93 Aligned_cols=104 Identities=23% Similarity=0.396 Sum_probs=83.2
Q ss_pred CHHHHHHHHHHHHHccchhhHHHHHHHhc-------------CchhHHHHHHHHHHHHHHHHHhcCCCcccccCCCChhh
Q 027333 87 DPYERARARFWAKFGDDKVLASIWNAFIK-------------QGKEQEEAIGLAIETLKFLEEELKGKRFFGGEKIGLPD 153 (225)
Q Consensus 87 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~l~~le~~L~~~~fl~G~~~t~aD 153 (225)
|+.+++.+++|+.+.++.+.+.+...+.. .++..+....++.+.|..||++|++++|++|+++|+||
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~gd~~t~aD 80 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLAGSPYVAGDRFTIAD 80 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHH
Confidence 46789999999999888887776654421 12234567788999999999999988999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHcCchh
Q 027333 154 LALGWLANLIGVFEEVIGVKLIEKERFPLLSAWMQEFAEAPVI 196 (225)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 196 (225)
|++++.+.++... +.+. ...+|+|.+|++++.++|++
T Consensus 81 i~l~~~~~~~~~~----~~~~--~~~~p~l~~w~~~~~~~p~~ 117 (117)
T cd03182 81 ITAFVGLDFAKVV----KLRV--PEELTHLRAWYDRMAARPSA 117 (117)
T ss_pred HHHHHHhHHHHhc----CCCC--ccccHHHHHHHHHHHhccCC
Confidence 9999998876432 4332 35899999999999999974
No 71
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.58 E-value=1.2e-14 Score=101.39 Aligned_cols=105 Identities=20% Similarity=0.409 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHh----cCchhHHHHHHHHHHHHHHHHHhcCCCcccccCCCChhhhhHHHHHHHHHH
Q 027333 90 ERARARFWAKFGDDKVLASIWNAFI----KQGKEQEEAIGLAIETLKFLEEELKGKRFFGGEKIGLPDLALGWLANLIGV 165 (225)
Q Consensus 90 ~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~ 165 (225)
+++++++|+.+..+.+.+.+...+. ..+...+.....+.+.++.||++|++++|++|+++|+||+++++.+.++..
T Consensus 2 ~~a~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~aDi~l~~~~~~~~~ 81 (118)
T cd03177 2 KRAIVNQRLHFDSGTLYQRLRDYYYPILFGGAEPPEEKLDKLEEALDFLETFLEGSDYVAGDQLTIADLSLVATVSTLEA 81 (118)
T ss_pred hHHHHHHHHHhhhchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHccCCeeCCCCcCHHHHHHHHHHHHHHH
Confidence 4788999999988877776654332 223455677889999999999999888999999999999999999888743
Q ss_pred HHHHhhcccccccccchHHHHHHHHHcCchhhhcC
Q 027333 166 FEEVIGVKLIEKERFPLLSAWMQEFAEAPVIKESW 200 (225)
Q Consensus 166 ~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~ 200 (225)
. .+ ++...+|+|.+|+++|.++|.+++..
T Consensus 82 ~---~~---~~~~~~p~l~~w~~~~~~~p~~~~~~ 110 (118)
T cd03177 82 L---LP---LDLSKYPNVRAWLERLKALPPYEEAN 110 (118)
T ss_pred h---cC---CChhhCchHHHHHHHHHcccchHHHH
Confidence 1 12 22357999999999999999999854
No 72
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=99.58 E-value=2.9e-14 Score=99.75 Aligned_cols=107 Identities=16% Similarity=0.238 Sum_probs=81.1
Q ss_pred cchhhHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhcCC-CcccccCCCChhhhhHHHHHHHHHHHHH-Hhhcccccccc
Q 027333 102 DDKVLASIWNAFIKQGKEQEEAIGLAIETLKFLEEELKG-KRFFGGEKIGLPDLALGWLANLIGVFEE-VIGVKLIEKER 179 (225)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~-~~fl~G~~~t~aD~~l~~~l~~~~~~~~-~~~~~~~~~~~ 179 (225)
.+.+.+....++....+. ++..+.+.+.|..||..|++ ++||+|+++|+||+++++.+.++..... ..+... .+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~Le~~L~~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~--~~~ 87 (121)
T cd03201 11 GSKIFSTFVGFLKSKDSN-DGTEQALLDELEALEDHLKENGPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSV--PES 87 (121)
T ss_pred HHHHHHHHHHHHHCCcHH-HHHHHHHHHHHHHHHHHHhcCCCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCC--ccc
Confidence 344455556666554433 55678899999999999984 8999999999999999998777653211 112211 369
Q ss_pred cchHHHHHHHHHcCchhhhcCCChHHHHHHHH
Q 027333 180 FPLLSAWMQEFAEAPVIKESWPPHEKLVTKFR 211 (225)
Q Consensus 180 ~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~ 211 (225)
+|+|.+|+++|.++|+|+++++..+.+...++
T Consensus 88 ~P~l~~w~~rl~~rps~~~t~~~~~~~~~~~~ 119 (121)
T cd03201 88 LTSVKSYMKALFSRESFVKTKAEKEDVIAGWA 119 (121)
T ss_pred chHHHHHHHHHHCCchhhhcCCCHHHHHHHhc
Confidence 99999999999999999999998888776654
No 73
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=99.58 E-value=6.7e-15 Score=101.85 Aligned_cols=104 Identities=17% Similarity=0.272 Sum_probs=82.6
Q ss_pred HHHHHHHHHHccchhhHHHHHHH-----hc--CchhHHHHHHHHHHHHHHHHHhcCCCcccccCCCChhhhhHHHHHHHH
Q 027333 91 RARARFWAKFGDDKVLASIWNAF-----IK--QGKEQEEAIGLAIETLKFLEEELKGKRFFGGEKIGLPDLALGWLANLI 163 (225)
Q Consensus 91 ~a~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~l~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~ 163 (225)
++++++|+.|.++.+.+.+...+ .. .+...+.....+.+.++.+|+.|++++|++|+++|+|||++++.+.+.
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~~~~~ 81 (113)
T cd03178 2 RYEVLQWLFFQMGGLGPMFGQAGHFSRYAPEKIPYAIERYTNEAKRLYGVLDKRLAGRDYLAGDEYSIADIAIFPWVRRL 81 (113)
T ss_pred hHHHHHHHHHHHccCCCcchHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHccCCcccCCCCCeeeeeHHHHHHHH
Confidence 68889999999888777654321 11 233456678889999999999999899999999999999999988876
Q ss_pred HHHHHHhhcccccccccchHHHHHHHHHcCchhhhcC
Q 027333 164 GVFEEVIGVKLIEKERFPLLSAWMQEFAEAPVIKESW 200 (225)
Q Consensus 164 ~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~ 200 (225)
... +... ...+|++.+|+++|.++|++++++
T Consensus 82 ~~~----~~~~--~~~~p~l~~w~~~~~~~p~~~~~~ 112 (113)
T cd03178 82 EWI----GIDD--LDDFPNVKRWLDRIAARPAVQRGL 112 (113)
T ss_pred Hhc----cccc--hhhchHHHHHHHHHhhCHHHHHhc
Confidence 432 3221 458999999999999999999865
No 74
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=99.57 E-value=1.4e-14 Score=101.03 Aligned_cols=106 Identities=18% Similarity=0.224 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHccchhhHHHHHH-----Hhc------CchhHHHHHHHHHHHHHHHHHhcCCCcccccCCCChhhhhHHH
Q 027333 90 ERARARFWAKFGDDKVLASIWNA-----FIK------QGKEQEEAIGLAIETLKFLEEELKGKRFFGGEKIGLPDLALGW 158 (225)
Q Consensus 90 ~~a~~~~~~~~~~~~~~~~~~~~-----~~~------~~~~~~~~~~~l~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~ 158 (225)
+++++.+|+.+..+.+.+.+... +.. .++..+.....+.+.++.||++|++++|++|+++|+|||++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~ 81 (118)
T cd03187 2 ERAIVEQWLEVESHQFDPPASALAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVYEARLSKSKYLAGDSFTLADLSHLP 81 (118)
T ss_pred chHHHHHHHHHHHhhcchhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHcccCcccCCCCccHHHHHHHH
Confidence 47889999998877776654432 111 2233455678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccccccchHHHHHHHHHcCchhhhcC
Q 027333 159 LANLIGVFEEVIGVKLIEKERFPLLSAWMQEFAEAPVIKESW 200 (225)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~ 200 (225)
++.+.... +.. ...+.+|+|.+|+++|.++|++++++
T Consensus 82 ~~~~~~~~----~~~-~~~~~~p~l~~~~~~~~~~p~~~~~~ 118 (118)
T cd03187 82 YLQYLMAT----PFA-KLFDSRPHVKAWWEDISARPAWKKVL 118 (118)
T ss_pred HHHHHHHc----cch-hhhhcCchHHHHHHHHHhCHHHHhhC
Confidence 88776431 111 11358999999999999999998753
No 75
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.57 E-value=1e-14 Score=102.23 Aligned_cols=107 Identities=19% Similarity=0.163 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHccchhhHHHHH----HHhcC----ch-hHHHHHHHHHHHHHHHHHhcC--CCcccccCCCChhhhhHH
Q 027333 89 YERARARFWAKFGDDKVLASIWN----AFIKQ----GK-EQEEAIGLAIETLKFLEEELK--GKRFFGGEKIGLPDLALG 157 (225)
Q Consensus 89 ~~~a~~~~~~~~~~~~~~~~~~~----~~~~~----~~-~~~~~~~~l~~~l~~le~~L~--~~~fl~G~~~t~aD~~l~ 157 (225)
.+++.+++|+.++++.+.+.+.. .+... +. ..+...+.+.+.|..+|++|+ +++||+|+++|+||++++
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~~~ 81 (121)
T cd03191 2 KKRARVRALALIIACDIHPLNNLRVLKYLTEELGLDEEAKNAWYRHWIARGFAALEKLLAQTAGKFCFGDEPTLADICLV 81 (121)
T ss_pred hhHHHHHHHHHHHHccCCccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecCCcCCHHHHHHH
Confidence 46899999999998777654211 11111 11 223345678899999999997 458999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccccccchHHHHHHHHHcCchhhhcCCC
Q 027333 158 WLANLIGVFEEVIGVKLIEKERFPLLSAWMQEFAEAPVIKESWPP 202 (225)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 202 (225)
+.+.++... +. +.+.+|+|.+|++++.++|.|+++.+.
T Consensus 82 ~~~~~~~~~----~~---~~~~~p~l~~w~~~~~~~p~~~~~~~~ 119 (121)
T cd03191 82 PQVYNARRF----GV---DLSPYPTIARINEACLELPAFQAAHPD 119 (121)
T ss_pred HHHHHHHHh----CC---CcccCcHHHHHHHHHHhChhHHHhCcC
Confidence 988765422 32 235899999999999999999998764
No 76
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=99.57 E-value=2e-14 Score=100.94 Aligned_cols=110 Identities=20% Similarity=0.379 Sum_probs=86.6
Q ss_pred HHHHHHHHHHccchhhHHHHHHHhc-------CchhHHHHHHHHHHHHHHHHHhcCCCcccccCCCChhhhhHHHHHHHH
Q 027333 91 RARARFWAKFGDDKVLASIWNAFIK-------QGKEQEEAIGLAIETLKFLEEELKGKRFFGGEKIGLPDLALGWLANLI 163 (225)
Q Consensus 91 ~a~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~ 163 (225)
++++++|+.++...+.+.+...+.. +....+...+.+.+.|+.+|+.|++++|++|+++|+||+++++.+.+.
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~siaDi~l~~~~~~~ 81 (123)
T cd03181 2 EAQVLQWVSFANTELLPAVAAWFLPLLGIAPYNKKSVEAALEELDRVLGVLEERLLKRTYLVGERLTLADIFVAGALLLG 81 (123)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHccCceeccCCccHHHHHHHHHHHHH
Confidence 6789999999988888876544321 223456678889999999999999899999999999999999988876
Q ss_pred HHHHHHhhcccccccccchHHHHHHHHHcCchhhhcCCChH
Q 027333 164 GVFEEVIGVKLIEKERFPLLSAWMQEFAEAPVIKESWPPHE 204 (225)
Q Consensus 164 ~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 204 (225)
.... .+... ...+|++.+|++++.++|+|++++++.+
T Consensus 82 ~~~~--~~~~~--~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 118 (123)
T cd03181 82 FTYV--FDKEW--RAKYPNVTRWFNTVVNQPIFKAVFGEVK 118 (123)
T ss_pred HHHH--cCHHH--HHhChHHHHHHHHHHcCHHHHHHcCCCC
Confidence 3221 11111 3479999999999999999999887654
No 77
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=99.56 E-value=3.1e-14 Score=99.63 Aligned_cols=114 Identities=21% Similarity=0.324 Sum_probs=80.3
Q ss_pred CHHHHHHHHHHHHHccchhhHHH-HHHHhcCchhHHHHHHHHHHHHHHHHHhcC---CCcccccCCCChhhhhHHHHHHH
Q 027333 87 DPYERARARFWAKFGDDKVLASI-WNAFIKQGKEQEEAIGLAIETLKFLEEELK---GKRFFGGEKIGLPDLALGWLANL 162 (225)
Q Consensus 87 ~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~le~~L~---~~~fl~G~~~t~aD~~l~~~l~~ 162 (225)
|+..|+.+++|+.+. ..+...+ ...+... ..+++.+.++.||+.|+ +++|++| ++|+||+++++.+.+
T Consensus 1 d~~~ra~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~l~~Le~~L~~~~~~~fl~G-~~tlADi~l~~~~~~ 72 (120)
T cd03203 1 DPAKREFADELLAYT-DAFTKALYSSLIKGD------PSAEAAAALDYIENALSKFDDGPFFLG-QFSLVDIAYVPFIER 72 (120)
T ss_pred CHHHHHHHHHHHHHH-HHHHHHHHHHHhcCC------chHHHHHHHHHHHHHHHhcCCCCCcCC-CccHHHHHHHHHHHH
Confidence 467899999999882 2222222 2222221 12244667778888776 5899999 999999999998876
Q ss_pred HHHH-HHHhhcccccccccchHHHHHHHHHcCchhhhcCCChHHHHHHH
Q 027333 163 IGVF-EEVIGVKLIEKERFPLLSAWMQEFAEAPVIKESWPPHEKLVTKF 210 (225)
Q Consensus 163 ~~~~-~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~ 210 (225)
+... ....+.+. .+++|+|.+|+++|.++|+++++.++.+.+.+.+
T Consensus 73 ~~~~~~~~~~~~~--~~~~P~l~~W~~~~~~rp~~~~~~~~~~~~~~~~ 119 (120)
T cd03203 73 FQIFLSELFNYDI--TEGRPNLAAWIEEMNKIEAYTQTKQDPQELLDLA 119 (120)
T ss_pred HHHHHHHhcCccc--cccCcHHHHHHHHHhcchHHHhHcCCHHHHHhhh
Confidence 6431 12224433 2589999999999999999999999988777654
No 78
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=99.55 E-value=3.4e-14 Score=99.60 Aligned_cols=108 Identities=19% Similarity=0.276 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHhc-C-chhHHHHHHHHHHHHHHHHHhcCCCcccccCCCChhhhhHHHHHHHHHHHH
Q 027333 90 ERARARFWAKFGDDKVLASIWNAFIK-Q-GKEQEEAIGLAIETLKFLEEELKGKRFFGGEKIGLPDLALGWLANLIGVFE 167 (225)
Q Consensus 90 ~~a~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~ 167 (225)
+++.++++++.+.+.. ..+..++.. + +...+.....+.+.+..||++|++++|++|+++|+||+++++.+.++...
T Consensus 2 e~~~id~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aDi~l~~~~~~~~~~- 79 (121)
T cd03209 2 ERIRVDMLEQQAMDLR-MGLARICYSPDFEKLKPDYLAKLPDKLKLFSDFLGDRPWFAGDKITYVDFLLYEALDQHRIF- 79 (121)
T ss_pred chHHHHHHHHHHHHHH-HHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhCCCCCcCCCCccHHHHHHHHHHHHHHHh-
Confidence 4677888777766664 333333322 2 23345567788899999999999899999999999999999988887432
Q ss_pred HHhhcccccccccchHHHHHHHHHcCchhhhcCCChH
Q 027333 168 EVIGVKLIEKERFPLLSAWMQEFAEAPVIKESWPPHE 204 (225)
Q Consensus 168 ~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 204 (225)
+... .+.||+|.+|++++.++|++++++++.+
T Consensus 80 ---~~~~--~~~~P~l~~~~~rv~~~p~vk~~~~~~~ 111 (121)
T cd03209 80 ---EPDC--LDAFPNLKDFLERFEALPKISAYMKSDR 111 (121)
T ss_pred ---Cccc--cccChHHHHHHHHHHHCHHHHHHHhccc
Confidence 2222 3589999999999999999999988764
No 79
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=99.55 E-value=3.3e-14 Score=100.42 Aligned_cols=108 Identities=23% Similarity=0.230 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHh-cCchhHHHHHHHHHHHHHHHHHhcCC---CcccccCCCChhhhhHHHHHHHHHH
Q 027333 90 ERARARFWAKFGDDKVLASIWNAFI-KQGKEQEEAIGLAIETLKFLEEELKG---KRFFGGEKIGLPDLALGWLANLIGV 165 (225)
Q Consensus 90 ~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~le~~L~~---~~fl~G~~~t~aD~~l~~~l~~~~~ 165 (225)
+++.++++++.+.+.. ..+..++. ..+...+.....+.+.|..||+.|++ ++|++|+++|+||+++++.+.++..
T Consensus 3 e~~~vd~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~~~~~~~ 81 (126)
T cd03210 3 EAALIDMVNDGVEDLR-LKYVRMIYQNYEAGKDDYIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDLLDIHLV 81 (126)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHHHHHHHH
Confidence 5677777777665443 33333333 23344556677789999999999973 5899999999999999998887743
Q ss_pred HHHHhhcccccccccchHHHHHHHHHcCchhhhcCCChH
Q 027333 166 FEEVIGVKLIEKERFPLLSAWMQEFAEAPVIKESWPPHE 204 (225)
Q Consensus 166 ~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 204 (225)
. .... .+.+|+|.+|+++|.++|.++++++...
T Consensus 82 ~----~~~~--~~~~P~l~~~~~rv~~~p~v~~~~~~~~ 114 (126)
T cd03210 82 L----APGC--LDAFPLLKAFVERLSARPKLKAYLESDA 114 (126)
T ss_pred h----ChHh--hhcChHHHHHHHHHHhCcHHHHHHhCcC
Confidence 2 2112 3589999999999999999999887653
No 80
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.55 E-value=5.8e-14 Score=96.57 Aligned_cols=100 Identities=22% Similarity=0.419 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHh----cC-----chhHHHHHHHHHHHHHHHHHhcCCCcccccCCCChhhhhHHHHH
Q 027333 90 ERARARFWAKFGDDKVLASIWNAFI----KQ-----GKEQEEAIGLAIETLKFLEEELKGKRFFGGEKIGLPDLALGWLA 160 (225)
Q Consensus 90 ~~a~~~~~~~~~~~~~~~~~~~~~~----~~-----~~~~~~~~~~l~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l 160 (225)
+++++++|+.+..+.+.+.+...+. .. +...+...+.+.+.|+.+|++|++++|++|+++|+||+++++.+
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~l~g~~~t~aDi~~~~~~ 81 (110)
T cd03180 2 ARARADRWMDWQTSTLNPAFRYAFWGLVRTPPEQRDPAAIAASLAAWAKLMAILDAQLAGRPYLAGDRFTLADIPLGCSA 81 (110)
T ss_pred chhHHHHHHHHHHhhcChHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHHH
Confidence 4788999999998888887654322 11 12235567889999999999999899999999999999999987
Q ss_pred HHHHHHHHHhhcccccccccchHHHHHHHHHcCchh
Q 027333 161 NLIGVFEEVIGVKLIEKERFPLLSAWMQEFAEAPVI 196 (225)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 196 (225)
...... + ....++|+|.+|+++|.++|+|
T Consensus 82 ~~~~~~----~---~~~~~~p~l~~~~~~~~~~p~~ 110 (110)
T cd03180 82 YRWFEL----P---IERPPLPHLERWYARLRARPAF 110 (110)
T ss_pred HHHHHc----c---cccccCchHHHHHHHHHhCCCC
Confidence 533211 2 1246899999999999999975
No 81
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=99.51 E-value=1.2e-13 Score=98.90 Aligned_cols=109 Identities=22% Similarity=0.292 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHhcCchhH---HH-HHHHHHHHHHHHHHhcC--CCcccccCCCChhhhhHHHHHHHH
Q 027333 90 ERARARFWAKFGDDKVLASIWNAFIKQGKEQ---EE-AIGLAIETLKFLEEELK--GKRFFGGEKIGLPDLALGWLANLI 163 (225)
Q Consensus 90 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~l~~~l~~le~~L~--~~~fl~G~~~t~aD~~l~~~l~~~ 163 (225)
+++.++++++.+.+.+...+...+..+++.. .. ..+.+.+.|+.||++|+ +++|++|+++|+||+++++.+.++
T Consensus 3 e~a~iD~i~~~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~l~~~l~~~ 82 (137)
T cd03208 3 ERALIDMYVEGTADLMEMILMLPFLPPEEKEAKLALIKEKAKNRYFPVFEKVLKSHGQDFLVGNKLSRADIHLLEAILMV 82 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHHHHHHHHHH
Confidence 5778888888776665444333332222211 12 23456789999999998 688999999999999999998887
Q ss_pred HHHHHHhhcccccccccchHHHHHHHHHcCchhhhcCCChH
Q 027333 164 GVFEEVIGVKLIEKERFPLLSAWMQEFAEAPVIKESWPPHE 204 (225)
Q Consensus 164 ~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 204 (225)
... .... ...||+|.+|+++|.++|+++++++...
T Consensus 83 ~~~----~~~~--l~~~P~l~~~~~rv~~~P~vk~~~~~~~ 117 (137)
T cd03208 83 EEL----DPSL--LSDFPLLQAFKTRISNLPTIKKFLQPGS 117 (137)
T ss_pred HHh----chhh--hccChHHHHHHHHHHcCHHHHHHHhcCC
Confidence 432 2222 3589999999999999999999987553
No 82
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=99.51 E-value=8.9e-14 Score=98.15 Aligned_cols=104 Identities=24% Similarity=0.296 Sum_probs=77.0
Q ss_pred HHHHHHHHHHccchhhHHHHHH---------Hhc---CchhHHHHHHHHHHHHHHHHHh-cCCCcccccCCCChhhhhHH
Q 027333 91 RARARFWAKFGDDKVLASIWNA---------FIK---QGKEQEEAIGLAIETLKFLEEE-LKGKRFFGGEKIGLPDLALG 157 (225)
Q Consensus 91 ~a~~~~~~~~~~~~~~~~~~~~---------~~~---~~~~~~~~~~~l~~~l~~le~~-L~~~~fl~G~~~t~aD~~l~ 157 (225)
++++++|+.|..+.+.+.+... +.. .++..+...+.+.+.++.+|++ +++++|++|+++|+||++++
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~l~Gd~~t~ADi~l~ 81 (126)
T cd03183 2 RARVDEYLAWQHTNLRLGCAKYFWQKVLLPLLGGKPVSPEKVKKAEENLEESLDLLENYFLKDKPFLAGDEISIADLSAV 81 (126)
T ss_pred cccHHHHHHHHHhhhHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHH
Confidence 4667888888877666544321 111 2334456678899999999997 55579999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccccccchHHHHHHHHHc--CchhhhcC
Q 027333 158 WLANLIGVFEEVIGVKLIEKERFPLLSAWMQEFAE--APVIKESW 200 (225)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~--~p~~~~~~ 200 (225)
+.+.+.... +.+. .+.+|+|.+|+++|.+ +|+++++.
T Consensus 82 ~~~~~~~~~----~~~~--~~~~p~l~~w~~~~~~~~~p~~~~~~ 120 (126)
T cd03183 82 CEIMQPEAA----GYDV--FEGRPKLAAWRKRVKEAGNPLFDEAH 120 (126)
T ss_pred HHHHHHHhc----CCcc--cccCchHHHHHHHHHHhcchhHHHHH
Confidence 987665432 3322 3589999999999999 89998854
No 83
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=99.50 E-value=9.1e-14 Score=93.21 Aligned_cols=95 Identities=11% Similarity=0.160 Sum_probs=74.3
Q ss_pred HHHHHhhcCCCCCCCCCHHHHHHHHHHHHHccchhhHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhcCCCcccccCCCC
Q 027333 71 LEYVDETWKQNPLLPEDPYERARARFWAKFGDDKVLASIWNAFIKQGKEQEEAIGLAIETLKFLEEELKGKRFFGGEKIG 150 (225)
Q Consensus 71 ~~yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~fl~G~~~t 150 (225)
++||++.. .++|.++.+.++++.|++.....+.. ....++.+.++.+|++|++++|++|+++|
T Consensus 1 ~r~~~~~~---~~~~~~~~~~~~vd~~~d~~~~~l~~--------------~~~~~~~~~l~~le~~L~~~~fl~Gd~~t 63 (96)
T cd03200 1 ARFLYRLL---GPAPNAPNAATNIDSWVDTAIFQLAE--------------GSSKEKAAVLRALNSALGRSPWLVGSEFT 63 (96)
T ss_pred CchHHHHh---cccCCCchHHHHHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHHHcCCCccCCCCCC
Confidence 47888883 39999999999999999965433320 13345557788999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHc
Q 027333 151 LPDLALGWLANLIGVFEEVIGVKLIEKERFPLLSAWMQEFAE 192 (225)
Q Consensus 151 ~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~ 192 (225)
+|||++++.+.+. +. ....+|+|.+|+++|.+
T Consensus 64 iADi~l~~~l~~~-------~~---~~~~~p~l~~w~~r~~~ 95 (96)
T cd03200 64 VADIVSWCALLQT-------GL---ASAAPANVQRWLKSCEN 95 (96)
T ss_pred HHHHHHHHHHHHc-------cc---ccccChHHHHHHHHHHh
Confidence 9999999876542 21 13589999999999976
No 84
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.50 E-value=6.3e-14 Score=95.36 Aligned_cols=99 Identities=18% Similarity=0.248 Sum_probs=76.1
Q ss_pred HHHHHccchhhHHHHHHHhc-CchhHHHHHHHHHHHHHHHHHhcCCCcccccCCCChhhhhHHHHHHHHHHHHHHhhccc
Q 027333 96 FWAKFGDDKVLASIWNAFIK-QGKEQEEAIGLAIETLKFLEEELKGKRFFGGEKIGLPDLALGWLANLIGVFEEVIGVKL 174 (225)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~ 174 (225)
+|+.+..+.+.+.+...+.. .++..+....++.+.++.||++|++++|++|+++|+||+++++.+.+.... + .
T Consensus 3 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~g~~~t~aDi~~~~~~~~~~~~----~--~ 76 (103)
T cd03207 3 RWLFFYAGVVEPALIAKAMGIEEPARMAGFGSYDDVLAALEQALAKGPYLLGERFTAADVLVGSPLGWGLQF----G--L 76 (103)
T ss_pred eeeeeccccccHHHHHHHcCCCcchhhhhhhhHHHHHHHHHHHHccCCcccCCccCHHHHHHHHHHHHHHHc----C--C
Confidence 45555556666655443332 233456667889999999999999899999999999999999988886421 2 1
Q ss_pred ccccccchHHHHHHHHHcCchhhhcCCC
Q 027333 175 IEKERFPLLSAWMQEFAEAPVIKESWPP 202 (225)
Q Consensus 175 ~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 202 (225)
...+|+|.+|++++.++|+++++...
T Consensus 77 --~~~~p~l~~w~~~~~~~p~~~~~~~~ 102 (103)
T cd03207 77 --LPERPAFDAYIARITDRPAFQRAAAI 102 (103)
T ss_pred --CCCChHHHHHHHHHHcCHHHHHHhcc
Confidence 35899999999999999999987653
No 85
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.47 E-value=1.9e-13 Score=92.49 Aligned_cols=95 Identities=21% Similarity=0.385 Sum_probs=69.6
Q ss_pred HHHHHHccchhhHHHHHH----HhcCchhHHHHHHHHHHHHHHHHHhcCCCcccccCCCChhhhhHHHHHHHHHHHHHHh
Q 027333 95 RFWAKFGDDKVLASIWNA----FIKQGKEQEEAIGLAIETLKFLEEELKGKRFFGGEKIGLPDLALGWLANLIGVFEEVI 170 (225)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~ 170 (225)
.+|+.+..+.+.+..... ........++...++.+.++.+|++|++++|++|+++|+||+++++.+.+...
T Consensus 2 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~~----- 76 (100)
T cd03206 2 QRWLSVAAGEIANGPAAARLITLFGAPLDKETAIARAHRLLRLLEEHLAGRDWLAGDRPTIADVAVYPYVALAPE----- 76 (100)
T ss_pred ceehhhhhhhcccchhHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHccCCccCCCCCCHHHHHHHHHHHHHhc-----
Confidence 456666666654332221 11122345677889999999999999999999999999999999998765321
Q ss_pred hcccccccccchHHHHHHHHHcCchh
Q 027333 171 GVKLIEKERFPLLSAWMQEFAEAPVI 196 (225)
Q Consensus 171 ~~~~~~~~~~p~l~~w~~~~~~~p~~ 196 (225)
.....+.+|+|.+|+++|.++|++
T Consensus 77 --~~~~~~~~p~l~~~~~~~~~~p~~ 100 (100)
T cd03206 77 --GGVDLEDYPAIRRWLARIEALPGF 100 (100)
T ss_pred --cCCChhhCcHHHHHHHHHHhCcCC
Confidence 112245899999999999999975
No 86
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=99.46 E-value=2.6e-13 Score=90.88 Aligned_cols=72 Identities=29% Similarity=0.497 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCcccccCCCChhhhhHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHcCc
Q 027333 118 KEQEEAIGLAIETLKFLEEELKGKRFFGGEKIGLPDLALGWLANLIGVFEEVIGVKLIEKERFPLLSAWMQEFAEAP 194 (225)
Q Consensus 118 ~~~~~~~~~l~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p 194 (225)
+..+.....+.+.|+.+|+.|++++|++|+++|+||+++++.+.++... +.... .++||+|.+|+++|.++|
T Consensus 24 ~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~----~~~~~-~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 24 EMVEEARAKVPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERL----GPDFL-FEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHH----TTTTT-HTTSHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHh----CCCcc-cccCHHHHHHHHHHHcCC
Confidence 3456778899999999999999999999999999999999999988654 43333 269999999999999987
No 87
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.44 E-value=6.8e-13 Score=91.98 Aligned_cols=103 Identities=19% Similarity=0.161 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHccchhhHHHHHH-----HhcC--chhHHHHHHHHHHHHHHHHHhcC-CCcccccCCCChhhhhHHHHH
Q 027333 89 YERARARFWAKFGDDKVLASIWNA-----FIKQ--GKEQEEAIGLAIETLKFLEEELK-GKRFFGGEKIGLPDLALGWLA 160 (225)
Q Consensus 89 ~~~a~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~l~~~l~~le~~L~-~~~fl~G~~~t~aD~~l~~~l 160 (225)
.+++++++|+.++.+.+.+..... +... +...+.....+.+.+..+|.+|+ +++||+| ++|+||+++++++
T Consensus 2 ~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~l~G-~fSiAD~~l~~~~ 80 (114)
T cd03195 2 RQRARARQVQAWLRSDLLPIRVERSTEVVFAGAKAEPLSEAAQAAAEKLIAVAEALLPPGAANLFG-EWCIADTDLALML 80 (114)
T ss_pred HhhHHHHHHHHHHHhhHHHHHHhCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcccC-CccHHHHHHHHHH
Confidence 578999999999999988763211 1111 12346678888999999999995 5589999 5999999999999
Q ss_pred HHHHHHHHHhhcccccccccchHHHHHHHHHcCchhhhcCC
Q 027333 161 NLIGVFEEVIGVKLIEKERFPLLSAWMQEFAEAPVIKESWP 201 (225)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~ 201 (225)
.+.... |.+. . |++.+|++||.++|+|++.++
T Consensus 81 ~~~~~~----g~~l----~-p~l~ay~~r~~~rPa~~~~~~ 112 (114)
T cd03195 81 NRLVLN----GDPV----P-ERLRDYARRQWQRPSVQAWLA 112 (114)
T ss_pred HHHHHc----CCCC----C-HHHHHHHHHHHCCHHHHHHHh
Confidence 887543 5432 2 999999999999999998764
No 88
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.42 E-value=6.6e-13 Score=83.54 Aligned_cols=68 Identities=26% Similarity=0.346 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCcccccCCCChhhhhHHHHHHHHHHHHHHhhcccccccccchHHHHHHH
Q 027333 118 KEQEEAIGLAIETLKFLEEELKGKRFFGGEKIGLPDLALGWLANLIGVFEEVIGVKLIEKERFPLLSAWMQE 189 (225)
Q Consensus 118 ~~~~~~~~~l~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 189 (225)
...++..+.+.+.|+.||++|++++|++|++||+||+++++.+.++... +.+......+|+|.+|++|
T Consensus 2 ~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~----~~~~~~~~~~p~l~~w~~r 69 (69)
T PF13410_consen 2 AAVERARAQLEAALDALEDHLADGPFLFGDRPSLADIALAPFLWRLRFV----GPDFDLLEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSBTTBSS--HHHHHHHHHHHHHHHC----THTCCHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHh----CcCcCccccCHHHHHHHhC
Confidence 3467788999999999999999999999999999999999999988665 2221124699999999986
No 89
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=1.2e-11 Score=90.74 Aligned_cols=170 Identities=15% Similarity=0.153 Sum_probs=124.5
Q ss_pred hhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhcCCCCCCC-CCHHHHH
Q 027333 14 PFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVDETWKQNPLLP-EDPYERA 92 (225)
Q Consensus 14 p~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~~~~~~~~l~p-~~~~~~a 92 (225)
.-|..|..+|+++++||.++.-+- .+| .+|. |++|.|..|.+.++|-..|..++..+.-. +-. .+..+++
T Consensus 35 ascLAVqtfLrMcnLPf~v~~~~N----aef--mSP~-G~vPllr~g~~~~aef~pIV~fVeak~~~--l~s~lsE~qka 105 (257)
T KOG3027|consen 35 ASCLAVQTFLRMCNLPFNVRQRAN----AEF--MSPG-GKVPLLRIGKTLFAEFEPIVDFVEAKGVT--LTSWLSEDQKA 105 (257)
T ss_pred hhHHHHHHHHHHcCCCceeeecCC----ccc--cCCC-CCCceeeecchhhhhhhHHHHHHHHhccc--hhhhhhhHHHH
Confidence 458899999999999999987542 222 4675 89999999999999999999999998632 221 2445788
Q ss_pred HHHHHHHHccchhhHHHHHH-Hh----------------------------c-------------CchhHHHHHHHHHHH
Q 027333 93 RARFWAKFGDDKVLASIWNA-FI----------------------------K-------------QGKEQEEAIGLAIET 130 (225)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~-~~----------------------------~-------------~~~~~~~~~~~l~~~ 130 (225)
.++..++.+++.+...-..+ |. . +....+...++....
T Consensus 106 dmra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie~vdkc 185 (257)
T KOG3027|consen 106 DMRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIEQVDKC 185 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHH
Confidence 88888888777654432110 00 0 122346667888899
Q ss_pred HHHHHHhcCCCcccccCCCChhhhhHHHHHHHHHHHH-HHhhcccccccccchHHHHHHHHHcC
Q 027333 131 LKFLEEELKGKRFFGGEKIGLPDLALGWLANLIGVFE-EVIGVKLIEKERFPLLSAWMQEFAEA 193 (225)
Q Consensus 131 l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~-~~~~~~~~~~~~~p~l~~w~~~~~~~ 193 (225)
+..|+.+|+..+||.|++||-+|..+|+.+..+.... +....... .++|+||.++++|+.+.
T Consensus 186 ~~aLsa~L~~q~yf~g~~P~elDAlvFGHlytilTt~Lpn~ela~~-lkkys~LlefcrrIeq~ 248 (257)
T KOG3027|consen 186 CRALSAQLGSQPYFTGDQPTELDALVFGHLYTILTTRLPNMELANI-LKKYSNLLEFCRRIEQQ 248 (257)
T ss_pred HHHHHHHhcCCCccCCCCccHHHHHHHhhhHHhhhhcCCcHHHHHH-HHHhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999877664321 00011111 46899999999999863
No 90
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.39 E-value=1.1e-12 Score=89.44 Aligned_cols=95 Identities=21% Similarity=0.314 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHh---------cCchhHHHHHHHHHHHHHHHHHhcCCCcccccCCCChhhhhHHHHH
Q 027333 90 ERARARFWAKFGDDKVLASIWNAFI---------KQGKEQEEAIGLAIETLKFLEEELKGKRFFGGEKIGLPDLALGWLA 160 (225)
Q Consensus 90 ~~a~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l 160 (225)
+++++++|+.+..+.+.+.+..... .+++..+....++.+.++.||+.|++++|++|+++|+||+++++.+
T Consensus 2 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~g~~~slaDi~~~~~~ 81 (105)
T cd03179 2 ERAQVLRWLFFEQYSHEPYIATLRFLRVYLGLGEADAEVLAFLRERGHAALAVLEAHLAGRDFLVGDALTIADIALAAYT 81 (105)
T ss_pred cHHHHHHHHHHhhcccCccceeeeeeEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHccCccccCCCCCHHHHHHHHHH
Confidence 4788999999987777776543211 1234456778899999999999998889999999999999999998
Q ss_pred HHHHHHHHHhhcccccccccchHHHHHHHHH
Q 027333 161 NLIGVFEEVIGVKLIEKERFPLLSAWMQEFA 191 (225)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~ 191 (225)
.++... +.+ ..++|+|.+|+++++
T Consensus 82 ~~~~~~----~~~---~~~~p~l~~~~~~~~ 105 (105)
T cd03179 82 HVADEG----GFD---LADYPAIRAWLARIE 105 (105)
T ss_pred Hhcccc----CCC---hHhCccHHHHHHhhC
Confidence 887431 322 458999999999874
No 91
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.36 E-value=3.5e-12 Score=87.26 Aligned_cols=75 Identities=17% Similarity=0.293 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCC----------cccccCCCChhhhhHHHHHHHHHHHHHHhhcccc--cccccchHHH
Q 027333 118 KEQEEAIGLAIETLKFLEEELKGK----------RFFGGEKIGLPDLALGWLANLIGVFEEVIGVKLI--EKERFPLLSA 185 (225)
Q Consensus 118 ~~~~~~~~~l~~~l~~le~~L~~~----------~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~--~~~~~p~l~~ 185 (225)
+..++...++.+.|+.||++|+++ +||+|+++|+|||++++.+.++... +.+.. ....||+|.+
T Consensus 25 ~~i~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~----~~~~~~~~~~~~P~l~~ 100 (111)
T cd03204 25 EYLKKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFL----GLSRRYWGNGKRPNLEA 100 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHc----CccccccccccChHHHH
Confidence 345778899999999999999754 5999999999999999998887532 32211 0258999999
Q ss_pred HHHHHHcCchh
Q 027333 186 WMQEFAEAPVI 196 (225)
Q Consensus 186 w~~~~~~~p~~ 196 (225)
|+++|.++|+|
T Consensus 101 w~~rv~aRpsf 111 (111)
T cd03204 101 YFERVLQRESF 111 (111)
T ss_pred HHHHHHcCCCC
Confidence 99999999975
No 92
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.33 E-value=6.8e-12 Score=79.08 Aligned_cols=59 Identities=20% Similarity=0.207 Sum_probs=49.4
Q ss_pred CChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhh
Q 027333 12 SSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVDET 77 (225)
Q Consensus 12 ~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~~~ 77 (225)
.+++|.+++++|++.|++|+.+.... . ...+|. |+||+|++||.+++||.+|+.||.++
T Consensus 16 ~~~~~~kv~~~L~elglpye~~~~~~----~--~~~~P~-GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 16 DNASCLAVQTFLKMCNLPFNVRCRAN----A--EFMSPS-GKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCHHHHHHHHHHcCCCcEEEecCC----c--cccCCC-CcccEEEECCEEEeCHHHHHHHHhcC
Confidence 56789999999999999999884321 1 125677 89999999999999999999999864
No 93
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=99.30 E-value=2.9e-12 Score=86.53 Aligned_cols=95 Identities=23% Similarity=0.314 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHccchhhHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhcCCCc--ccccCCCChhhhhHHHHHHHHHH
Q 027333 88 PYERARARFWAKFGDDKVLASIWNAFIKQGKEQEEAIGLAIETLKFLEEELKGKR--FFGGEKIGLPDLALGWLANLIGV 165 (225)
Q Consensus 88 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~--fl~G~~~t~aD~~l~~~l~~~~~ 165 (225)
+..++.+++|+++.. .......-....+...+...+.+.+.|..+|++|+++. ||+|++||+||+++++.|..+..
T Consensus 3 ~~~~a~i~~W~~f~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~~~ 80 (99)
T PF14497_consen 3 PYWRALIDRWLDFSV--AFRRRKARLEKDEASGDFSREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLASLRW 80 (99)
T ss_dssp -TTHHHHHHHHH-GH--CCHCCHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHhccc--hhhhHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHHHHhh
Confidence 445778888988441 00000000011234567778999999999999998766 99999999999999998866532
Q ss_pred HHHHhhcccccccccchHHHHHHHHHc
Q 027333 166 FEEVIGVKLIEKERFPLLSAWMQEFAE 192 (225)
Q Consensus 166 ~~~~~~~~~~~~~~~p~l~~w~~~~~~ 192 (225)
. .++ +.+|||.+|++||++
T Consensus 81 -----~--~~~-~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 81 -----A--DFP-KDYPNLVRWYERIEE 99 (99)
T ss_dssp -----C--HHT-TTCHHHHHHHHHHHT
T ss_pred -----c--ccc-cccHHHHHHHHhhcC
Confidence 1 121 599999999999974
No 94
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=2.8e-10 Score=89.15 Aligned_cols=172 Identities=18% Similarity=0.228 Sum_probs=123.2
Q ss_pred CChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEEe-CCeeeeehHHHHHHHHhhcCCCCCCCCC-HH
Q 027333 12 SSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIH-NGKPISESLVILEYVDETWKQNPLLPED-PY 89 (225)
Q Consensus 12 ~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~-~g~~l~es~~I~~yL~~~~~~~~l~p~~-~~ 89 (225)
.++-|.++.++++.++-|.+++..+-. | .+|. |++|+|+. +|..+++-..|..+|.....+..+-++. ..
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ssN~----~---~s~s-g~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~~k 87 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSSNP----W---RSPS-GKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLSAK 87 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeecCC----C---CCCC-CCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHHHH
Confidence 578899999999999966666654321 1 2455 89999995 6799999999999999853333333333 56
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHh-------------------------------------------cCchhHHHHHHH
Q 027333 90 ERARARFWAKFGDDKVLASIWNAFI-------------------------------------------KQGKEQEEAIGL 126 (225)
Q Consensus 90 ~~a~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~~~~~~ 126 (225)
+.+....|+.++++.+.+.+...+. ...+..+.....
T Consensus 88 q~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~i~~~ 167 (313)
T KOG3028|consen 88 QLADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQIYKD 167 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHHHHHH
Confidence 7888889999988888887665221 011123344566
Q ss_pred HHHHHHHHHHhcCCCcccccCCCChhhhhHHHHHHHHHHHH-HHhhcccccccccchHHHHHHHHHc
Q 027333 127 AIETLKFLEEELKGKRFFGGEKIGLPDLALGWLANLIGVFE-EVIGVKLIEKERFPLLSAWMQEFAE 192 (225)
Q Consensus 127 l~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~-~~~~~~~~~~~~~p~l~~w~~~~~~ 192 (225)
..+++..|.+.|+.++|++|++||--|..++..+..+...+ +....... ...++||.++++++++
T Consensus 168 Aska~~~LS~~Lgs~kffFgd~psslDa~lfs~la~~~~~~Lp~~~Lq~~-l~~~~NL~~~~~~i~s 233 (313)
T KOG3028|consen 168 ASKALNLLSTLLGSKKFFFGDKPSSLDALLFSYLAILLQVALPNDSLQVH-LLAHKNLVRYVERIRS 233 (313)
T ss_pred HHHHHHHHHHHhcCceEeeCCCCchHHHHHHHHHHHHHhccCCchhHHHH-HHhcchHHHHHHHHHH
Confidence 67889999999999999999999999999999888742211 00000001 2359999999999987
No 95
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.29 E-value=1.6e-11 Score=79.32 Aligned_cols=72 Identities=26% Similarity=0.273 Sum_probs=63.4
Q ss_pred CceEEeccCCChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 027333 3 EEVKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVD 75 (225)
Q Consensus 3 ~~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~ 75 (225)
++++||+.++||+|.+++.+|...||+|+.+.++-.....++...+.. ..+|++..||..+.++..|.+||+
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~-~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGA-TTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCC-CCcCeEEECCEEEcCHHHHHHHhC
Confidence 479999999999999999999999999999998765444566667776 789999999999999999999984
No 96
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=99.28 E-value=1.7e-11 Score=83.43 Aligned_cols=96 Identities=23% Similarity=0.164 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHhcC-----chhHHHHHHHHHHHHHHHHHhcCC--CcccccCCCChhhhhHHHHHHH
Q 027333 90 ERARARFWAKFGDDKVLASIWNAFIKQ-----GKEQEEAIGLAIETLKFLEEELKG--KRFFGGEKIGLPDLALGWLANL 162 (225)
Q Consensus 90 ~~a~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~l~~le~~L~~--~~fl~G~~~t~aD~~l~~~l~~ 162 (225)
++++++.+++..++........++... ++..+...+.+.+.++.||++|++ ++|++|+++|+||+++++.+.+
T Consensus 2 e~~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l~~~~~~ 81 (104)
T cd03192 2 EAARVDALVDTIADLRAEFAKYFYEKDGEEKKEKKKEFLKEAIPKYLKKLEKILKENGGGYLVGDKLTWADLVVFDVLDY 81 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHHHHHHHH
Confidence 467788888876555433333333222 444566788899999999999977 8999999999999999999888
Q ss_pred HHHHHHHhhcccccccccchHHHHHHHH
Q 027333 163 IGVFEEVIGVKLIEKERFPLLSAWMQEF 190 (225)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~p~l~~w~~~~ 190 (225)
+... +... ....||+|.+|++++
T Consensus 82 ~~~~----~~~~-~~~~~p~l~~~~~~~ 104 (104)
T cd03192 82 LLYL----DPKL-LLKKYPKLKALRERV 104 (104)
T ss_pred HHhh----Cchh-hHHhChhHHHHHHhC
Confidence 7532 2221 135899999999875
No 97
>PRK10638 glutaredoxin 3; Provisional
Probab=99.26 E-value=3.4e-11 Score=78.54 Aligned_cols=73 Identities=25% Similarity=0.288 Sum_probs=64.6
Q ss_pred CCCceEEeccCCChhhHHHHHHHHHcCCCceEEecCCCC-CChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 027333 1 MAEEVKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSN-KSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVD 75 (225)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~ 75 (225)
|+ +++||+.+.||||++++.+|..+|++|+.++++... ..+++.+.++. +++|++..||..+.+...+..+-.
T Consensus 1 m~-~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~-~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 1 MA-NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGR-TTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred CC-cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEeCHHHHHHHHH
Confidence 77 899999999999999999999999999999997653 45678889998 899999999999999988887643
No 98
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=99.25 E-value=1.4e-11 Score=82.81 Aligned_cols=92 Identities=24% Similarity=0.493 Sum_probs=68.0
Q ss_pred HHHHHHccchhhHHHHHHHhc-------CchhHHHHHHHHHHHHHHHHHhcCCCcccccCCCChhhhhHHHHHHHHHHHH
Q 027333 95 RFWAKFGDDKVLASIWNAFIK-------QGKEQEEAIGLAIETLKFLEEELKGKRFFGGEKIGLPDLALGWLANLIGVFE 167 (225)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~ 167 (225)
++|+.+.++.+.+.+...+.. .++..+...+.+.+.++.||++|++++|++|+++|+||+++++.+.++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~t~aDi~~~~~l~~~~~~~ 81 (100)
T cd00299 2 RAWEEWADTTLEPAARRLLLLAFVGPEVDEAALEEAREELAAALAALEKLLAGRPYLAGDRFSLADIALAPVLARLDLLG 81 (100)
T ss_pred hHHHHHHHhhcCCcccceeeeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcCHHHHHHHHHHHHHHHhh
Confidence 456666666555554443332 2445567788999999999999999999999999999999999999886542
Q ss_pred HHhhcccccccccchHHHHHHHH
Q 027333 168 EVIGVKLIEKERFPLLSAWMQEF 190 (225)
Q Consensus 168 ~~~~~~~~~~~~~p~l~~w~~~~ 190 (225)
...+ . .+.+|+|.+|+++|
T Consensus 82 ~~~~--~--~~~~p~l~~~~~~~ 100 (100)
T cd00299 82 PLLG--L--LDEYPRLAAWYDRL 100 (100)
T ss_pred hhhh--h--hccCccHHHHHHhC
Confidence 2111 1 35899999999875
No 99
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.24 E-value=5e-11 Score=82.57 Aligned_cols=72 Identities=17% Similarity=0.256 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHhc---CCCcccccCCCChhhhhHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHcCchh
Q 027333 120 QEEAIGLAIETLKFLEEEL---KGKRFFGGEKIGLPDLALGWLANLIGVFEEVIGVKLIEKERFPLLSAWMQEFAEAPVI 196 (225)
Q Consensus 120 ~~~~~~~l~~~l~~le~~L---~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 196 (225)
.+...+.+.+.+..+|..| ++++||+|+ +|+||+++++.+.+.... + ++ ..|+|.+|+++|.++|++
T Consensus 39 ~~~~~~~~~~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~~~~~----~---~~--~~P~l~~~~~rv~~rPsv 108 (114)
T cd03194 39 SEAVQADIARIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVVTRFRTY----G---LP--LSPAAQAYVDALLAHPAM 108 (114)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHHHHHHHc----C---CC--CCHHHHHHHHHHHCCHHH
Confidence 4455566666666666665 577899999 999999999988876321 3 22 239999999999999999
Q ss_pred hhcCC
Q 027333 197 KESWP 201 (225)
Q Consensus 197 ~~~~~ 201 (225)
+++++
T Consensus 109 ~~~~~ 113 (114)
T cd03194 109 QEWIA 113 (114)
T ss_pred HHHHh
Confidence 98764
No 100
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=99.22 E-value=2.7e-11 Score=79.93 Aligned_cols=68 Identities=24% Similarity=0.205 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCcccccCCCChhhhhHHHHHHHHHHHHHHhhcc--cccccccchHHHHHHHHH
Q 027333 122 EAIGLAIETLKFLEEELKGKRFFGGEKIGLPDLALGWLANLIGVFEEVIGVK--LIEKERFPLLSAWMQEFA 191 (225)
Q Consensus 122 ~~~~~l~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~--~~~~~~~p~l~~w~~~~~ 191 (225)
...+++.+.++.+|+.|++++|++|+++|+||+++++.+.++.... .+.. ....+.+|+|.+|+++|.
T Consensus 19 ~~~~~~~~~l~~le~~L~~~~yl~Gd~~t~aDi~l~~~l~~~~~~~--~~~~~~~~~~~~~p~l~~~~~r~~ 88 (88)
T cd03193 19 EIYSLAKKDLKALSDLLGDKKFFFGDKPTSLDATVFGHLASILYAP--LPNSALQLILKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHHHHHHHhcC--CCChHHHHHHHhCcHHHHHHHHhC
Confidence 6678899999999999999999999999999999999888764310 0110 011357999999999974
No 101
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.17 E-value=1.2e-10 Score=81.97 Aligned_cols=69 Identities=20% Similarity=0.226 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcccccCCCChhhhhHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHcC
Q 027333 120 QEEAIGLAIETLKFLEEELKGKRFFGGEKIGLPDLALGWLANLIGVFEEVIGVKLIEKERFPLLSAWMQEFAEA 193 (225)
Q Consensus 120 ~~~~~~~l~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~ 193 (225)
.+...+.+.+.|+.+|++|++++|+.|+++|+||+++++.+.+.... .+.+. .+.+|+|.+|++||.+.
T Consensus 56 ~~~~~~~~~~~l~~l~~~L~~~~fl~Gd~~t~AD~~l~~~l~~~~~~---~~~~~--~~~~p~l~~W~~r~~~~ 124 (124)
T cd03202 56 REAALANFRAALEPLRATLKGQPFLGGAAPNYADYIVFGGFQWARIV---SPFPL--LEEDDPVYDWFERCLDL 124 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCccCCCCCchhHHHHHHHHHHHHHc---Ccccc--cccCChHHHHHHHHhcC
Confidence 45778889999999999999999999999999999999988887532 12222 35899999999999863
No 102
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.15 E-value=3e-10 Score=71.97 Aligned_cols=72 Identities=24% Similarity=0.254 Sum_probs=61.1
Q ss_pred CceEEeccCCChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 027333 3 EEVKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVD 75 (225)
Q Consensus 3 ~~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~ 75 (225)
++++||+.+.||+|.+++-+|...|++|+.++++.......+...... ..+|++..||..+.++..|.+||+
T Consensus 1 ~~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~-~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 1 ESVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGA-MTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred CeEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCC-CCcCeEEECCEEEeCHHHHHHHhC
Confidence 368999999999999999999999999999998765433444555555 689999999999999999999974
No 103
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.07 E-value=9.7e-10 Score=69.61 Aligned_cols=58 Identities=26% Similarity=0.419 Sum_probs=49.7
Q ss_pred CChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhh
Q 027333 12 SSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVDET 77 (225)
Q Consensus 12 ~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~~~ 77 (225)
.||+|.++.++|+.+|++|+.+...- -..+|. |++|+|+++|..+.||..|++||.++
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~~n-------~~~sp~-gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPSNN-------PWRSPT-GKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEecCC-------CCCCCC-CccCEEEECCEEecChHHHHHHHHHc
Confidence 57999999999999999998875431 123577 89999999999999999999999875
No 104
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.98 E-value=3.4e-09 Score=71.26 Aligned_cols=67 Identities=22% Similarity=0.328 Sum_probs=52.9
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCCCcccccCCCChhhhhHHHHHHHHHHHHHHhhcccccccccchHHHHHHHH
Q 027333 117 GKEQEEAIGLAIETLKFLEEELKGKRFFGGEKIGLPDLALGWLANLIGVFEEVIGVKLIEKERFPLLSAWMQEF 190 (225)
Q Consensus 117 ~~~~~~~~~~l~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~ 190 (225)
++..+.....+.+.|+.+|++|++++| +++|+||+++++.+.+..... .+... ...+|+|.+|+++|
T Consensus 32 ~~~~~~~~~~~~~~l~~le~~L~~~~~---d~~TlADi~l~~~l~~~~~~~--~~~~~--~~~~p~l~~w~~rm 98 (98)
T cd03205 32 QPWLERQRGKIERALDALEAELAKLPL---DPLDLADIAVACALGYLDFRH--PDLDW--RAAHPALAAWYARF 98 (98)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhCCC---CCCCHHHHHHHHHHHHHHhHc--cCcch--hhhChHHHHHHHhC
Confidence 344567789999999999999998888 899999999999998875321 12211 35899999999985
No 105
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.97 E-value=8.7e-10 Score=77.62 Aligned_cols=74 Identities=14% Similarity=0.025 Sum_probs=57.5
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCCCcccccCCCChhhhhHHHHHHHHHHH-HHHhhcccccccccchHHHHHHHHH
Q 027333 117 GKEQEEAIGLAIETLKFLEEELKGKRFFGGEKIGLPDLALGWLANLIGVF-EEVIGVKLIEKERFPLLSAWMQEFA 191 (225)
Q Consensus 117 ~~~~~~~~~~l~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~-~~~~~~~~~~~~~~p~l~~w~~~~~ 191 (225)
....++..+...+.|+.|++.|++++||+|++||.+|+++++++.++... ......... ..+||||.+|++||.
T Consensus 52 r~~~ee~~~~~~~~l~aLs~~Lg~~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~-~~~~pnL~~y~~Ri~ 126 (126)
T cd03211 52 DKTLDQVIEEVDQCCQALSQRLGTQPYFFGDQPTELDALVFGHLFTILTTQLPNDELAEK-VKKYSNLLAFCRRIE 126 (126)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHH-HHhCcHHHHHHHhcC
Confidence 44667888889999999999999999999999999999999998877432 000011111 458999999999984
No 106
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=98.92 E-value=4.2e-09 Score=75.17 Aligned_cols=74 Identities=16% Similarity=0.079 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCcccccCCCChhhhhHHHHHHHHHHHHH-HhhcccccccccchHHHHHHHHHc
Q 027333 118 KEQEEAIGLAIETLKFLEEELKGKRFFGGEKIGLPDLALGWLANLIGVFEE-VIGVKLIEKERFPLLSAWMQEFAE 192 (225)
Q Consensus 118 ~~~~~~~~~l~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~-~~~~~~~~~~~~p~l~~w~~~~~~ 192 (225)
...++..++..+.++.|++.|++++||+|+++|.+|+.+++.+..+..... ...... ...++|||.+|++||.+
T Consensus 60 ~~~~~~~~~a~~~l~~l~~~L~~~~~~~Gd~~t~~D~~~~~~l~~~~~~~~~~~~l~~-~~~~~pnL~~~~~ri~~ 134 (137)
T cd03212 60 EVEAEIYRDAKECLNLLSQRLGESQFFFGDTPTSLDALVFGYLAPLLKAPLPNNKLQN-HLKQCPNLCRFCDRILS 134 (137)
T ss_pred hhHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcHHHHHHHHHHHHHHhccCCChHHHH-HHHHCcHHHHHHHHHHH
Confidence 345677888899999999999999999999999999999998776642100 000011 14589999999999985
No 107
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.90 E-value=6.2e-09 Score=66.05 Aligned_cols=68 Identities=16% Similarity=0.154 Sum_probs=58.3
Q ss_pred ceEEeccCCChhhHHHHHHHHHcCCCceEEecCCC-CCChhhhhhCCCCCcccEEEeCCeeeeehHHHHH
Q 027333 4 EVKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLS-NKSPLLLQSNPVYKKVPVLIHNGKPISESLVILE 72 (225)
Q Consensus 4 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~ 72 (225)
+++||+.+.||+|++++.+|..+||+|+.++++-. ...+++.+.++. +.+|++..||..+.+-..+.+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~-~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGS-SVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEeCHHHHHh
Confidence 58999999999999999999999999999988754 234578888887 799999999998888766654
No 108
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=98.88 E-value=1.1e-08 Score=72.94 Aligned_cols=67 Identities=19% Similarity=0.303 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHhc-CCCcccccCCCChhhhhHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHc
Q 027333 121 EEAIGLAIETLKFLEEEL-KGKRFFGGEKIGLPDLALGWLANLIGVFEEVIGVKLIEKERFPLLSAWMQEFAE 192 (225)
Q Consensus 121 ~~~~~~l~~~l~~le~~L-~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~ 192 (225)
+..++.|...++.+-+.+ ++++|++|++||+||+++++.+..+.... +.. +..++|+|.+|++||++
T Consensus 78 ~D~r~~L~~a~~~w~~~~~~~~~FlaGd~ptIADisvyg~l~s~e~~~---~~~--Dl~~~p~I~~W~eRm~~ 145 (149)
T cd03197 78 DDVREWLYDALNTWVAALGKDRQFHGGSKPNLADLAVYGVLRSVEGHP---AFK--DMVEETKIGEWYERMDA 145 (149)
T ss_pred chHHHHHHHHHHHHHHHhcCCCCccCCCCCCHHHHHHHHHHHHHHHhc---ccc--chhhCcCHHHHHHHHHH
Confidence 344555555555554444 45789999999999999999887774321 221 35599999999999986
No 109
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.86 E-value=8.5e-09 Score=66.65 Aligned_cols=62 Identities=15% Similarity=0.230 Sum_probs=49.5
Q ss_pred ceEEeccCCChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeee
Q 027333 4 EVKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHNGKPISE 66 (225)
Q Consensus 4 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~e 66 (225)
+++||+.+.||+|.+++-+|..+||+|+.++++-.....+....++. ..+|+++.++..+.+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~-~~vPvv~i~~~~~~G 63 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGF-RQLPVVIAGDLSWSG 63 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCC-CCcCEEEECCEEEec
Confidence 58999999999999999999999999999999754322233344676 799999988765543
No 110
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.86 E-value=1e-08 Score=64.75 Aligned_cols=69 Identities=25% Similarity=0.225 Sum_probs=56.0
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecCCCC-CChhhhhhCCCCCcccEEEeCCeee--eehHHHHHHH
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSN-KSPLLLQSNPVYKKVPVLIHNGKPI--SESLVILEYV 74 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l--~es~~I~~yL 74 (225)
++||+.++||+|++++.+|...|++|..++++... ..+++.+.++. +.+|+++.+|..+ .++..|.++|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~-~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQ-RGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCC-CcccEEEECCEEEeeCCHHHHHHHh
Confidence 79999999999999999999999999998886542 23456777887 7899999888777 5566666654
No 111
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.86 E-value=1.3e-08 Score=63.84 Aligned_cols=69 Identities=22% Similarity=0.212 Sum_probs=59.7
Q ss_pred ceEEeccCCChhhHHHHHHHHHcCCCceEEecCCCC-CChhhhhhCCCCCcccEEEeCCeeeeehHHHHHH
Q 027333 4 EVKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSN-KSPLLLQSNPVYKKVPVLIHNGKPISESLVILEY 73 (225)
Q Consensus 4 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~y 73 (225)
++++|+.++||+|++++.+|..+|++|+.++++... ...++.+.++. .++|++..+|..+.++..|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~-~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGW-PTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEecHHHHHHh
Confidence 478999999999999999999999999999886543 34567778887 7999999999999999888764
No 112
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.81 E-value=1.5e-08 Score=63.95 Aligned_cols=63 Identities=22% Similarity=0.302 Sum_probs=53.1
Q ss_pred ceEEeccCCChhhHHHHHHHHHcCCCceEEecCCC-CCChhhhhhCCCCCcccEEEeCCeeeeeh
Q 027333 4 EVKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLS-NKSPLLLQSNPVYKKVPVLIHNGKPISES 67 (225)
Q Consensus 4 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~g~vP~L~~~g~~l~es 67 (225)
++++|+.++||+|.+++.+|..+|++|+.+.++.. +..+++.+.||. +.+|+++++|..+.+.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~-~~vP~i~~~~~~i~g~ 64 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGY-RSVPVVVIGDEHLSGF 64 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCC-cccCEEEECCEEEecC
Confidence 37899999999999999999999999999998764 234567788897 8999999888766553
No 113
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.76 E-value=4.5e-08 Score=62.29 Aligned_cols=71 Identities=20% Similarity=0.253 Sum_probs=57.3
Q ss_pred ceEEeccCCChhhHHHHHHHHHcCCCceEEecCCC-CCChhhhhhCCCCC-cccEEEeCCeeeeehHHHHHHHH
Q 027333 4 EVKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLS-NKSPLLLQSNPVYK-KVPVLIHNGKPISESLVILEYVD 75 (225)
Q Consensus 4 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~g-~vP~L~~~g~~l~es~~I~~yL~ 75 (225)
+++||+.+.||+|.+++-+|...||+|+.+.++.. +...++...... . .+|++..+|..+.+...+.++-.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~-~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGG-RRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCC-CCccCEEEECCEEEeChHHHHHHHh
Confidence 47899999999999999999999999999998754 222344444433 3 79999999999999999888643
No 114
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.70 E-value=7.3e-08 Score=61.52 Aligned_cols=70 Identities=11% Similarity=0.199 Sum_probs=53.7
Q ss_pred ceEEeccCCChhhHHHHHHHHHcCCCceEEecCCCCC-ChhhhhhC-CCCCcccEEE-eCCeeeeeh--HHHHHHH
Q 027333 4 EVKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSNK-SPLLLQSN-PVYKKVPVLI-HNGKPISES--LVILEYV 74 (225)
Q Consensus 4 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~-~~~~~~~~-p~~g~vP~L~-~~g~~l~es--~~I~~yL 74 (225)
+++||+.++||+|++++.+|...|++|+.++++-... ...+.+.| +. ..+|+++ ++|..+.++ ..+..+|
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~-~~vP~i~~~~g~~l~~~~~~~~~~~l 75 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGN-MTVPTVKFADGSFLTNPSAAQVKAKL 75 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCC-ceeCEEEECCCeEecCCCHHHHHHHh
Confidence 4799999999999999999999999999988865432 34556676 76 7899997 577776664 3444444
No 115
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=98.64 E-value=3.3e-07 Score=61.74 Aligned_cols=105 Identities=22% Similarity=0.221 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHHHccchhhHHHHH-----HHhc--CchhHHHHHHHHHHHHHHHHHhcC-CCcccccCCCChhhhhHHH
Q 027333 87 DPYERARARFWAKFGDDKVLASIWN-----AFIK--QGKEQEEAIGLAIETLKFLEEELK-GKRFFGGEKIGLPDLALGW 158 (225)
Q Consensus 87 ~~~~~a~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~l~~~l~~le~~L~-~~~fl~G~~~t~aD~~l~~ 158 (225)
|..+|+.++++..|+.+.|.+.-.. +|.. ...-.+.....+.+.+...+..|. +++||+|+ .|+||..+.+
T Consensus 1 D~~~RArAR~vqAwlrSdf~~lR~Erpt~vvf~~~~~~pLs~~a~~~a~kL~~~a~~ll~~g~~~LFGe-wsIAD~dlA~ 79 (117)
T PF14834_consen 1 DRQERARARQVQAWLRSDFMALRQERPTNVVFRGARKPPLSEAAQAAAQKLIAVAERLLADGGPNLFGE-WSIADADLAL 79 (117)
T ss_dssp SHHHHHHHHHHHHHHHHS-HHHHHHS-THHHHS--------HHHHHHHHHHHHHHHHHTTT--SSTTSS---HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcccHHHHhhCChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCcccc-chHHHHHHHH
Confidence 4568999999999998887765332 3332 122346667777888888888886 57899997 9999999999
Q ss_pred HHHHHHHHHHHhhcccccccccchHHHHHHHHHcCchhhhcCC
Q 027333 159 LANLIGVFEEVIGVKLIEKERFPLLSAWMQEFAEAPVIKESWP 201 (225)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~ 201 (225)
+++.+... |.. ++ +.+..|.++.-++|++++.+.
T Consensus 80 ml~Rl~~~----gd~-vP----~~l~~Ya~~qwqrpsVQ~Wla 113 (117)
T PF14834_consen 80 MLNRLVTY----GDP-VP----ERLADYAERQWQRPSVQRWLA 113 (117)
T ss_dssp HHHHHHTT----T---------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHc----CCC-CC----HHHHHHHHHHHCCHHHHHHHH
Confidence 99988532 433 22 689999999999999998654
No 116
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.63 E-value=1.5e-07 Score=60.54 Aligned_cols=71 Identities=21% Similarity=0.201 Sum_probs=58.5
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecCCCC-CChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHh
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSN-KSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVDE 76 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~~ 76 (225)
+++|+.+.||+|.+++-+|+..|++|+.+.++... ...++.+.+.. ..+|++..+|..+.+...+..+-.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~-~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGR-RTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCC-CCcCEEEECCEEEcChHHHHHHHHc
Confidence 47999999999999999999999999999987542 23455565555 6899999999999998888876544
No 117
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=3.1e-07 Score=59.16 Aligned_cols=69 Identities=22% Similarity=0.321 Sum_probs=54.7
Q ss_pred ceEEeccCCChhhHHHHHHHHHcCCCceEEecCCCC--CChhhh-hhCCCCCcccEEEeCCeeeeehHHHHHH
Q 027333 4 EVKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSN--KSPLLL-QSNPVYKKVPVLIHNGKPISESLVILEY 73 (225)
Q Consensus 4 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~--~~~~~~-~~~p~~g~vP~L~~~g~~l~es~~I~~y 73 (225)
.+++|+.+.||||.++.-+|..+|++|+.+.++... ...++. ..++. .++|++..||..+.....+.++
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~-~tvP~I~i~~~~igg~~d~~~~ 73 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQ-RTVPQIFIGGKHVGGCDDLDAL 73 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCC-CCcCEEEECCEEEeCcccHHHH
Confidence 489999999999999999999999999999997765 333344 44466 7899999998877765544444
No 118
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.57 E-value=1.7e-07 Score=59.16 Aligned_cols=57 Identities=16% Similarity=0.240 Sum_probs=44.9
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEEeCCe
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHNGK 62 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~ 62 (225)
++||+.+.||+|++++-+|..+||+|+.++++-.....+....... ..+|+++.+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~-~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGF-RQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCC-cccCEEEECCC
Confidence 5899999999999999999999999999998754322233334455 68999998654
No 119
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.55 E-value=4.8e-07 Score=59.09 Aligned_cols=76 Identities=17% Similarity=0.211 Sum_probs=60.5
Q ss_pred ceEEeccCCChhhHHHHHHHHH-----cCCCceEEecCCCC-CChhhhhhCCC-CCcccEEEeCCeeeeehHHHHHHHHh
Q 027333 4 EVKLLKTWSSPFGLRAFWILKL-----KGVQFDFIDEDLSN-KSPLLLQSNPV-YKKVPVLIHNGKPISESLVILEYVDE 76 (225)
Q Consensus 4 ~~~Ly~~~~sp~~~~vr~~l~~-----~gi~~~~~~v~~~~-~~~~~~~~~p~-~g~vP~L~~~g~~l~es~~I~~yL~~ 76 (225)
.+++|+.++||+|.+++-+|.. .|++|+.++++-.. ...++...... ...+|.+..||..+.+...|.+++.+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~~~ 81 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYVKE 81 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHHHH
Confidence 4999999999999999999999 89999999987542 12234333221 03699999999999999999999988
Q ss_pred hcC
Q 027333 77 TWK 79 (225)
Q Consensus 77 ~~~ 79 (225)
.++
T Consensus 82 ~~~ 84 (85)
T PRK11200 82 NLG 84 (85)
T ss_pred hcc
Confidence 764
No 120
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.51 E-value=1e-06 Score=59.23 Aligned_cols=70 Identities=16% Similarity=0.089 Sum_probs=57.7
Q ss_pred CceEEeccCCChhhHHHHHHHHHcCCCceEEecCCCCCCh----hhhhhCCCCCcccEEEeCCeeeeehHHHHHH
Q 027333 3 EEVKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSNKSP----LLLQSNPVYKKVPVLIHNGKPISESLVILEY 73 (225)
Q Consensus 3 ~~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~----~~~~~~p~~g~vP~L~~~g~~l~es~~I~~y 73 (225)
+++++|+.++||||.+++-+|...|++|+.++++-..... .+...+.. ..+|.+..+|..+.+...+...
T Consensus 8 ~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~-~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCS-PAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCC-CCcCeEEECCEEEcCHHHHHHH
Confidence 5799999999999999999999999999999998553222 34455555 6899999999999998887774
No 121
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.47 E-value=2.3e-07 Score=56.40 Aligned_cols=59 Identities=25% Similarity=0.336 Sum_probs=48.8
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecCCC-CCChhhhhhCCCCCcccEEEeCCeee
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLS-NKSPLLLQSNPVYKKVPVLIHNGKPI 64 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~g~vP~L~~~g~~l 64 (225)
+++|+.+.||+|.+++-+|...|++|+.++++.. ...+++.+.... ..+|++..||..+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~-~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGV-RTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSS-SSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCC-CccCEEEECCEEC
Confidence 5799999999999999999999999999999876 334555565454 6899999988754
No 122
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.45 E-value=1.5e-06 Score=56.17 Aligned_cols=72 Identities=21% Similarity=0.223 Sum_probs=59.6
Q ss_pred ceEEeccCCChhhHHHHHHHHHcCCCceEEecCCCCCC----hhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHh
Q 027333 4 EVKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSNKS----PLLLQSNPVYKKVPVLIHNGKPISESLVILEYVDE 76 (225)
Q Consensus 4 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~----~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~~ 76 (225)
++++|+.+.||+|.+++-+|...+++|+.+.++..... ..+.+.+.. ..+|++..+|..+.++..|..+..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~-~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQ-RTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCC-CCCCeEEECCEEEcCHHHHHHHHHc
Confidence 47899999999999999999999999999998876432 234455554 5799999999999999999987654
No 123
>PHA03050 glutaredoxin; Provisional
Probab=98.45 E-value=1.6e-06 Score=59.12 Aligned_cols=69 Identities=19% Similarity=0.262 Sum_probs=57.5
Q ss_pred CceEEeccCCChhhHHHHHHHHHcCC---CceEEecCCCCC----ChhhhhhCCCCCcccEEEeCCeeeeehHHHHH
Q 027333 3 EEVKLLKTWSSPFGLRAFWILKLKGV---QFDFIDEDLSNK----SPLLLQSNPVYKKVPVLIHNGKPISESLVILE 72 (225)
Q Consensus 3 ~~~~Ly~~~~sp~~~~vr~~l~~~gi---~~~~~~v~~~~~----~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~ 72 (225)
+++++|..++||||.+++-+|...|+ +|+.++++-... ..++.+.+-. ..||.+..+|..+.+...+..
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~-~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGG-RTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCC-CCcCEEEECCEEEeChHHHHH
Confidence 47999999999999999999999999 799998875322 3456677665 689999999999988877776
No 124
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.36 E-value=2.5e-06 Score=55.78 Aligned_cols=75 Identities=17% Similarity=0.240 Sum_probs=57.2
Q ss_pred eEEeccCCChhhHHHHHHHHHcC-----CCceEEecCCCC-CChhhhhhCCC-CCcccEEEeCCeeeeehHHHHHHHHhh
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKG-----VQFDFIDEDLSN-KSPLLLQSNPV-YKKVPVLIHNGKPISESLVILEYVDET 77 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~g-----i~~~~~~v~~~~-~~~~~~~~~p~-~g~vP~L~~~g~~l~es~~I~~yL~~~ 77 (225)
+++|+.++||||.+++-+|...+ ++|+.++++... ...++....-. ...||++..||..+.++..|..++.+.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~~ 81 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKEN 81 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHhc
Confidence 58999999999999999999984 668887776432 12234333221 037999999999999999999999887
Q ss_pred cC
Q 027333 78 WK 79 (225)
Q Consensus 78 ~~ 79 (225)
++
T Consensus 82 ~~ 83 (86)
T TIGR02183 82 FD 83 (86)
T ss_pred cc
Confidence 64
No 125
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.32 E-value=3.4e-06 Score=56.43 Aligned_cols=71 Identities=23% Similarity=0.250 Sum_probs=55.5
Q ss_pred CceEEecc-----CCChhhHHHHHHHHHcCCCceEEecCCC-CCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHH
Q 027333 3 EEVKLLKT-----WSSPFGLRAFWILKLKGVQFDFIDEDLS-NKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYV 74 (225)
Q Consensus 3 ~~~~Ly~~-----~~sp~~~~vr~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL 74 (225)
+++.+|.- ++||||.+++-+|...||+|+.++++-. ....++.+.+.. ..+|.+..+|..+.+...+....
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~-~tvP~vfi~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNW-PTIPQLYVKGEFVGGCDIIMEMY 88 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCC-CCCCEEEECCEEEeChHHHHHHH
Confidence 56888854 8899999999999999999999988533 112344456655 68999999999998888877753
No 126
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.26 E-value=5.7e-06 Score=54.58 Aligned_cols=71 Identities=21% Similarity=0.177 Sum_probs=56.2
Q ss_pred CceEEecc-----CCChhhHHHHHHHHHcCCCceEEecCCCC-CChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHH
Q 027333 3 EEVKLLKT-----WSSPFGLRAFWILKLKGVQFDFIDEDLSN-KSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYV 74 (225)
Q Consensus 3 ~~~~Ly~~-----~~sp~~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL 74 (225)
+++++|.. ++||||.+++-+|...|++|+.++++-.. ...++.+.+.. ..+|.+..+|..+.+...+....
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~-~tvP~vfi~g~~iGG~~~l~~l~ 84 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNW-PTFPQLYVNGELVGGCDIVKEMH 84 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCC-CCCCEEEECCEEEeCHHHHHHHH
Confidence 46788854 69999999999999999999999986442 22344555555 58999999999999988888754
No 127
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.21 E-value=1.2e-05 Score=52.06 Aligned_cols=71 Identities=21% Similarity=0.266 Sum_probs=57.3
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCC--ceEEecCCCCCCh----hhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHh
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQ--FDFIDEDLSNKSP----LLLQSNPVYKKVPVLIHNGKPISESLVILEYVDE 76 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~--~~~~~v~~~~~~~----~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~~ 76 (225)
+++|+.++||+|.+++-+|...+++ |+.+.++...... .+.+.... ..+|.+..+|..+.++..+.++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~-~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQ-RTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCC-CCCCeEEECCEEEcCHHHHHHHHHc
Confidence 4789999999999999999999999 9888887653332 24455554 5799999999999999888887654
No 128
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=97.91 E-value=7.4e-05 Score=46.91 Aligned_cols=55 Identities=29% Similarity=0.443 Sum_probs=47.3
Q ss_pred CChhhHHHHHHHHHcCCC---ceEEecCCCCCChhhhhhCCCCCcccEEEe-CCeeeeehHHHHHHH
Q 027333 12 SSPFGLRAFWILKLKGVQ---FDFIDEDLSNKSPLLLQSNPVYKKVPVLIH-NGKPISESLVILEYV 74 (225)
Q Consensus 12 ~sp~~~~vr~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~-~g~~l~es~~I~~yL 74 (225)
.+|-|.++..+|...+.+ |+.+..+- + ..+|. |++|+|.+ ++..+.+-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n----~---~~Spt-g~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNN----P---WLSPT-GELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCC----C---CcCCC-CCCCEEEECCCcEEECHHHHHHhh
Confidence 578999999999999999 77776642 1 25677 89999999 899999999999998
No 129
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.87 E-value=6e-05 Score=63.62 Aligned_cols=70 Identities=19% Similarity=0.205 Sum_probs=55.1
Q ss_pred CCCceEEeccCCChhhHHHHHHHHHcCCCceEEecCCCCCChhhh-hh--------CCCCCcccEEEeCCeeeeehHHHH
Q 027333 1 MAEEVKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLL-QS--------NPVYKKVPVLIHNGKPISESLVIL 71 (225)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~-~~--------~p~~g~vP~L~~~g~~l~es~~I~ 71 (225)
|. ++++|+.++||+|.++.-+|...||+|+.++++-.....++. .. ... ..||.+..||..+.+-..+.
T Consensus 1 m~-~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~-~tvP~ifi~~~~igGf~~l~ 78 (410)
T PRK12759 1 MV-EVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHI-RTVPQIFVGDVHIGGYDNLM 78 (410)
T ss_pred CC-cEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCC-CccCeEEECCEEEeCchHHH
Confidence 66 799999999999999999999999999999997432222322 11 233 57999999998888887776
Q ss_pred H
Q 027333 72 E 72 (225)
Q Consensus 72 ~ 72 (225)
.
T Consensus 79 ~ 79 (410)
T PRK12759 79 A 79 (410)
T ss_pred H
Confidence 5
No 130
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.83 E-value=3.1e-05 Score=65.39 Aligned_cols=112 Identities=17% Similarity=0.301 Sum_probs=79.3
Q ss_pred ccEEEeCCeeeeehHHHHHHHHhhcC-CCCCCCCCHHHHHHHHHHHHHccchhhHHHHHHHhcCchhHHHHHHHHHHHHH
Q 027333 54 VPVLIHNGKPISESLVILEYVDETWK-QNPLLPEDPYERARARFWAKFGDDKVLASIWNAFIKQGKEQEEAIGLAIETLK 132 (225)
Q Consensus 54 vP~L~~~g~~l~es~~I~~yL~~~~~-~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 132 (225)
++.+.-+|..+.++..+..|..+... .+.+++.+ .++.+++.|+++.... ....+...+.
T Consensus 38 ~~~~~~d~~~l~~a~~~~~~~~~~~~~~~~lf~~~-~d~~~vd~w~~~s~~~------------------~~~~~s~~~~ 98 (712)
T KOG1147|consen 38 VDKQFLDGRKLNGATEPVVYSAALAKADPKLFGNN-IDRSQVDHWVSFSSTF------------------SFDEISSSLS 98 (712)
T ss_pred hhhhccccccccCCccchhhhhhhcccCHhHcCCc-ccHHHHHHHHHHhhhc------------------chHHHHHHHH
Confidence 44333456677777777777665443 33588877 7899999999987652 1235667788
Q ss_pred HHHHhcCCCcccccCCCChhhhhHHHHHHHHHHHHHHhhcccccccccchHHHHHH
Q 027333 133 FLEEELKGKRFFGGEKIGLPDLALGWLANLIGVFEEVIGVKLIEKERFPLLSAWMQ 188 (225)
Q Consensus 133 ~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~ 188 (225)
.++..|.-..||+|..+|+||+++|+.+..-......+. ....+-++.+|++
T Consensus 99 ~ld~~l~~~t~lvg~sls~Ad~aiw~~l~~n~~~~~~lk----~~k~~~~v~Rw~~ 150 (712)
T KOG1147|consen 99 ELDKFLVLRTFLVGNSLSIADFAIWGALHSNGMRQEQLK----AKKDYQNVERWYD 150 (712)
T ss_pred HHHhhhhHHHHhhccchhHHHHHHHHHHhcccchHHHHH----hhCCchhhhhhcC
Confidence 888888888999999999999999998876422222211 1346789999998
No 131
>PRK10824 glutaredoxin-4; Provisional
Probab=97.79 E-value=0.00013 Score=50.18 Aligned_cols=71 Identities=18% Similarity=0.206 Sum_probs=55.8
Q ss_pred CceEEecc-----CCChhhHHHHHHHHHcCCCceEEecCCC-CCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHH
Q 027333 3 EEVKLLKT-----WSSPFGLRAFWILKLKGVQFDFIDEDLS-NKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYV 74 (225)
Q Consensus 3 ~~~~Ly~~-----~~sp~~~~vr~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL 74 (225)
+++.+|.- +.||||.++.-+|...|++|..++++-+ +-...+.+.+-. ..||-+..+|..|.+...+....
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~-~TVPQIFI~G~~IGG~ddl~~l~ 91 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANW-PTFPQLWVDGELVGGCDIVIEMY 91 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCC-CCCCeEEECCEEEcChHHHHHHH
Confidence 46777755 5899999999999999999999888643 222345566655 68999999999999988887753
No 132
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.63 E-value=0.0003 Score=50.56 Aligned_cols=69 Identities=19% Similarity=0.095 Sum_probs=55.0
Q ss_pred ceEEeccC------CChhhHHHHHHHHHcCCCceEEecCCC-CCChhhhhhCC----CCCcccEEEeCCeeeeehHHHHH
Q 027333 4 EVKLLKTW------SSPFGLRAFWILKLKGVQFDFIDEDLS-NKSPLLLQSNP----VYKKVPVLIHNGKPISESLVILE 72 (225)
Q Consensus 4 ~~~Ly~~~------~sp~~~~vr~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p----~~g~vP~L~~~g~~l~es~~I~~ 72 (225)
+++||..+ ++|+|.+++.+|+..||+|+.++++.. ...+++.+... . ..+|.+..+|..|.+...+.+
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~-~tvPqVFI~G~~IGG~del~~ 79 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKA-VSLPRVFVDGRYLGGAEEVLR 79 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCC-CCCCEEEECCEEEecHHHHHH
Confidence 36899888 899999999999999999999999764 22344444422 2 479999999999999888887
Q ss_pred H
Q 027333 73 Y 73 (225)
Q Consensus 73 y 73 (225)
.
T Consensus 80 L 80 (147)
T cd03031 80 L 80 (147)
T ss_pred H
Confidence 4
No 133
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=97.59 E-value=0.00059 Score=48.00 Aligned_cols=67 Identities=21% Similarity=0.304 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcccccCCCChhhhhHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHcCchh
Q 027333 121 EEAIGLAIETLKFLEEELKGKRFFGGEKIGLPDLALGWLANLIGVFEEVIGVKLIEKERFPLLSAWMQEFAEAPVI 196 (225)
Q Consensus 121 ~~~~~~l~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 196 (225)
+...+++...|..||..+.......| ++|+-|+.+|+.|+.+.... |.. ++ |++.+|+++|.+.-.+
T Consensus 58 ~~~i~~l~~~L~~Le~ll~~~~~~n~-~LS~dDi~lFp~LR~Ltivk---gi~-~P----~~V~~Y~~~~s~~t~V 124 (132)
T PF04399_consen 58 PELIAELNADLEELEPLLASPNAVNG-ELSIDDIILFPILRSLTIVK---GIQ-WP----PKVRAYMDRMSKATGV 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHH-SCTTBTTS-S--HHHHHHHHHHHHHCTCT---TS--------HHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHhccccccCC-CCCHHHHHHHHHHhhhhhcc---CCc-CC----HHHHHHHHHHHHHcCC
Confidence 56678888889999998875544445 89999999999999885431 322 22 7999999999886544
No 134
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00059 Score=45.97 Aligned_cols=71 Identities=21% Similarity=0.228 Sum_probs=58.7
Q ss_pred CceEEeccCCChhhHHHHHHHHHcCCCceEEecCCCCCChh----hhhhCCCCCcccEEEeCCeeeeehHHHHHHH
Q 027333 3 EEVKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSNKSPL----LLQSNPVYKKVPVLIHNGKPISESLVILEYV 74 (225)
Q Consensus 3 ~~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~----~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL 74 (225)
++..+|.-.+||||.+++-+|.-.|+++.++++|-.....+ +.+..-. ..+|.+..+|..+.+...++.+-
T Consensus 14 ~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~-~tvP~vFI~Gk~iGG~~dl~~lh 88 (104)
T KOG1752|consen 14 NPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQ-RTVPNVFIGGKFIGGASDLMALH 88 (104)
T ss_pred CCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCC-CCCCEEEECCEEEcCHHHHHHHH
Confidence 57889999999999999999999999999999987644333 3344444 58999999999999999888764
No 135
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00076 Score=41.70 Aligned_cols=63 Identities=27% Similarity=0.351 Sum_probs=47.6
Q ss_pred CCCceEEeccCCChhhHHHHHHHHHcCCCceEEecCCC-----------CCChhhhh--hCCCCCcccEEE-eCCeeee
Q 027333 1 MAEEVKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLS-----------NKSPLLLQ--SNPVYKKVPVLI-HNGKPIS 65 (225)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~-----------~~~~~~~~--~~p~~g~vP~L~-~~g~~l~ 65 (225)
|+ +.+||+...||-|....-.|+-.+++|+.+++.-. +..++|-+ .|-. --+|+|. +||.++.
T Consensus 1 ms-kp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gy-iGIPall~~d~~vVl 77 (85)
T COG4545 1 MS-KPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGY-IGIPALLTDDGKVVL 77 (85)
T ss_pred CC-CceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCc-ccceEEEeCCCcEEE
Confidence 77 77999999999999999999999999999987532 33445432 3333 3489997 5676655
No 136
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=97.28 E-value=0.0017 Score=45.39 Aligned_cols=67 Identities=12% Similarity=0.167 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcccccCCCChhhhhHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHcCchh
Q 027333 121 EEAIGLAIETLKFLEEELKGKRFFGGEKIGLPDLALGWLANLIGVFEEVIGVKLIEKERFPLLSAWMQEFAEAPVI 196 (225)
Q Consensus 121 ~~~~~~l~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 196 (225)
....+++...|..++..+..... .++++|+-|+.+|+.|+.+.... |.. ++ |++..|+++|.+.-.+
T Consensus 59 ~~~i~~l~~~L~~l~~ll~~~~~-~n~~ls~DDi~lFp~LR~Lt~vk---gi~-~P----~~V~~Y~~~~s~~t~V 125 (128)
T cd03199 59 PQYIAALNALLEELDPLILSSEA-VNGQLSTDDIILFPILRNLTLVK---GLV-FP----PKVKAYLERMSALTKV 125 (128)
T ss_pred HHHHHHHHHHHHHHHHHHcCccc-cCCcCCHHHHHHHHHHhhhhhhc---CCC-CC----HHHHHHHHHHHHHhCC
Confidence 35667788888888888854333 45579999999999999885432 332 22 7999999999886544
No 137
>PTZ00062 glutaredoxin; Provisional
Probab=97.24 E-value=0.0015 Score=49.71 Aligned_cols=70 Identities=19% Similarity=0.126 Sum_probs=53.8
Q ss_pred CceEEecc-----CCChhhHHHHHHHHHcCCCceEEecCCCC-CChhhhhhCCCCCcccEEEeCCeeeeehHHHHHH
Q 027333 3 EEVKLLKT-----WSSPFGLRAFWILKLKGVQFDFIDEDLSN-KSPLLLQSNPVYKKVPVLIHNGKPISESLVILEY 73 (225)
Q Consensus 3 ~~~~Ly~~-----~~sp~~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~y 73 (225)
+++.||.- +.||||+++.-+|...||+|+..+++-+. ....+.+.+-. ..+|.+..+|..+.+...+.+.
T Consensus 113 ~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~-~TvPqVfI~G~~IGG~d~l~~l 188 (204)
T PTZ00062 113 HKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNW-PTYPQLYVNGELIGGHDIIKEL 188 (204)
T ss_pred CCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCC-CCCCeEEECCEEEcChHHHHHH
Confidence 46777733 68999999999999999999998886432 12344455554 5799999999999888777764
No 138
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.20 E-value=0.0017 Score=39.95 Aligned_cols=58 Identities=21% Similarity=0.255 Sum_probs=40.7
Q ss_pred ceEEeccCCChhhHHHHHHHHHc-----CCCceEEecCCCCCChhhhhhCCCCCcccEEEeCCeeee
Q 027333 4 EVKLLKTWSSPFGLRAFWILKLK-----GVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHNGKPIS 65 (225)
Q Consensus 4 ~~~Ly~~~~sp~~~~vr~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~ 65 (225)
++++|+.++||+|.+++-+|... +++|..++++- .+++....-. ..+|++..+|..++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~---~~~l~~~~~i-~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAE---FPDLADEYGV-MSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEccc---CHhHHHHcCC-cccCEEEECCEEEE
Confidence 47899999999999998888765 56666665542 2333433333 46999998887654
No 139
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=96.97 E-value=0.0011 Score=45.50 Aligned_cols=34 Identities=21% Similarity=0.086 Sum_probs=31.1
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecCCC
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLS 38 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~ 38 (225)
++||+.+.||+|++++-+|..+|++|+.+.+.-.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~ 34 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEE 34 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCC
Confidence 5899999999999999999999999999988543
No 140
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=96.89 E-value=0.0015 Score=44.28 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=30.6
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecCC
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDL 37 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~ 37 (225)
+++|+.+.||+|++++-+|..+||+|+.+++.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLK 33 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeecc
Confidence 579999999999999999999999999998853
No 141
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=96.78 E-value=0.0023 Score=45.19 Aligned_cols=32 Identities=19% Similarity=-0.002 Sum_probs=30.6
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecC
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDED 36 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~ 36 (225)
+++|+.+.||+|++++-+|...||+|+.+.+.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~ 33 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIF 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeecc
Confidence 79999999999999999999999999999874
No 142
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=96.68 E-value=0.0031 Score=43.51 Aligned_cols=32 Identities=19% Similarity=0.035 Sum_probs=30.5
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecC
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDED 36 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~ 36 (225)
+++|+.+.|++|++++-+|...||+|+.+++.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~ 33 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLF 33 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 78999999999999999999999999999874
No 143
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.49 E-value=0.0043 Score=42.94 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=30.0
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecC
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDED 36 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~ 36 (225)
++||+.+.||+|++++-+|...||+|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecC
Confidence 47999999999999999999999999999874
No 144
>PRK10026 arsenate reductase; Provisional
Probab=96.42 E-value=0.0053 Score=43.78 Aligned_cols=34 Identities=9% Similarity=0.148 Sum_probs=32.1
Q ss_pred CCCceEEeccCCChhhHHHHHHHHHcCCCceEEec
Q 027333 1 MAEEVKLLKTWSSPFGLRAFWILKLKGVQFDFIDE 35 (225)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v 35 (225)
|+ .+++|+.+.|.-|++.+-+|..+|++|+++++
T Consensus 1 m~-~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~ 34 (141)
T PRK10026 1 MS-NITIYHNPACGTSRNTLEMIRNSGTEPTIIHY 34 (141)
T ss_pred CC-EEEEEeCCCCHHHHHHHHHHHHCCCCcEEEee
Confidence 76 79999999999999999999999999999986
No 145
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.021 Score=37.70 Aligned_cols=72 Identities=22% Similarity=0.232 Sum_probs=52.9
Q ss_pred CceEEe-----ccCCChhhHHHHHHHHHcC-CCceEEecCCC-CCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 027333 3 EEVKLL-----KTWSSPFGLRAFWILKLKG-VQFDFIDEDLS-NKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVD 75 (225)
Q Consensus 3 ~~~~Ly-----~~~~sp~~~~vr~~l~~~g-i~~~~~~v~~~-~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~ 75 (225)
+++.|| ..|.|+|+.++--+|.+.| ++|..++|--+ +-+..+.+.+-+ -.+|-|-.+|..+.+|..|.+...
T Consensus 15 n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~W-PT~PQLyi~GEfvGG~DIv~Em~q 93 (105)
T COG0278 15 NPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNW-PTFPQLYVNGEFVGGCDIVREMYQ 93 (105)
T ss_pred CceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCC-CCCceeeECCEEeccHHHHHHHHH
Confidence 466777 5688999999999999999 67777776332 122333444444 589999999999999988877543
No 146
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=96.32 E-value=0.011 Score=41.80 Aligned_cols=33 Identities=12% Similarity=-0.001 Sum_probs=31.0
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecCC
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDL 37 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~ 37 (225)
+++|+.+.|+.|++++-+|...||+|+.+++.-
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~ 34 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGK 34 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 799999999999999999999999999998853
No 147
>PRK12559 transcriptional regulator Spx; Provisional
Probab=96.29 E-value=0.01 Score=41.90 Aligned_cols=33 Identities=18% Similarity=-0.033 Sum_probs=31.0
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecCC
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDL 37 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~ 37 (225)
+++|+.+.|+.|++++-+|..+||+|+.+.+.-
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~ 34 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeC
Confidence 789999999999999999999999999998753
No 148
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.16 E-value=0.028 Score=35.57 Aligned_cols=55 Identities=9% Similarity=0.071 Sum_probs=40.5
Q ss_pred eEEeccCCChhhHHH----HHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEEeCCeeee
Q 027333 5 VKLLKTWSSPFGLRA----FWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHNGKPIS 65 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~v----r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~ 65 (225)
+.+|+ ++||.|..+ .-+++..|++++.+.++- .++..+.+- ..+|++..||..+.
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~---~~~a~~~~v--~~vPti~i~G~~~~ 61 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD---MNEILEAGV--TATPGVAVDGELVI 61 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC---HHHHHHcCC--CcCCEEEECCEEEE
Confidence 77877 999999987 668888899999988872 223334443 46999998875543
No 149
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.15 E-value=0.0084 Score=40.62 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=30.1
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecC
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDED 36 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~ 36 (225)
+++|+.+.|+.|++++-+|...|++|+.+++.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~ 32 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYR 32 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecc
Confidence 58999999999999999999999999999874
No 150
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=96.11 E-value=0.01 Score=40.82 Aligned_cols=33 Identities=12% Similarity=0.079 Sum_probs=30.7
Q ss_pred ceEEeccCCChhhHHHHHHHHHcCCCceEEecC
Q 027333 4 EVKLLKTWSSPFGLRAFWILKLKGVQFDFIDED 36 (225)
Q Consensus 4 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~ 36 (225)
.++||+.+.|+-|++++-+|...|++|+.+.+-
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~ 33 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLL 33 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehh
Confidence 379999999999999999999999999999874
No 151
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=96.10 E-value=0.04 Score=36.31 Aligned_cols=67 Identities=13% Similarity=0.168 Sum_probs=49.1
Q ss_pred eEEeccCCCh------hhHHHHHHHHHcCCCceEEecCCCC-CChhhhhhC----CCCCcccEEEeCCeeeeehHHHHH
Q 027333 5 VKLLKTWSSP------FGLRAFWILKLKGVQFDFIDEDLSN-KSPLLLQSN----PVYKKVPVLIHNGKPISESLVILE 72 (225)
Q Consensus 5 ~~Ly~~~~sp------~~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~~~~~----p~~g~vP~L~~~g~~l~es~~I~~ 72 (225)
+++|....+. .|++++.+|.-+||+|+.++++... ...+..+.. +. ..+|-+..+|..+.+...+..
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~-~tvPQIFi~~~~iGg~ddl~~ 79 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGK-PLPPQIFNGDEYCGDYEAFFE 79 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCC-CCCCEEEECCEEeeCHHHHHH
Confidence 5777776654 3678899999999999999998652 233444442 23 478999899999988876666
No 152
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=95.82 E-value=0.016 Score=40.00 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=30.8
Q ss_pred ceEEeccCCChhhHHHHHHHHHcCCCceEEecC
Q 027333 4 EVKLLKTWSSPFGLRAFWILKLKGVQFDFIDED 36 (225)
Q Consensus 4 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~ 36 (225)
.++||+.+.|.-|++++-.|+..||+|+.+.+.
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~ 34 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYL 34 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 389999999999999999999999999999764
No 153
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=95.54 E-value=0.065 Score=34.33 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=39.0
Q ss_pred ceEEeccCCChhhHHHHHHHHHcC--CCceEEecCCCCCChhhhhhCCCCCcccEEEeCC
Q 027333 4 EVKLLKTWSSPFGLRAFWILKLKG--VQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHNG 61 (225)
Q Consensus 4 ~~~Ly~~~~sp~~~~vr~~l~~~g--i~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g 61 (225)
+++||+-+.|+.|..+.-.|.... .+|+...+|......++.+-+ -.||||..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~~Y~---~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFEKYG---YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHHHSC---TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHhc---CCCCEEEEcC
Confidence 479999999999999999999643 456666666665444444443 3699999766
No 154
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.46 E-value=0.15 Score=32.29 Aligned_cols=57 Identities=14% Similarity=0.233 Sum_probs=38.2
Q ss_pred ceEEeccCCChhhHHHHHHHHH----cCCCceEEecCCCCCChhhhhhCCCCCcccEEEeCCe
Q 027333 4 EVKLLKTWSSPFGLRAFWILKL----KGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHNGK 62 (225)
Q Consensus 4 ~~~Ly~~~~sp~~~~vr~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~ 62 (225)
.+++|+.++||+|..+.-.+.. .+..+....+|..+..+ ..+.... ..+|++..+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~-~~~~~~v-~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQ-KAMEYGI-MAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHH-HHHHcCC-ccCCEEEECCE
Confidence 3689999999999988777653 35446666666554333 3333333 46999987764
No 155
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=95.30 E-value=0.032 Score=39.10 Aligned_cols=33 Identities=15% Similarity=0.038 Sum_probs=31.0
Q ss_pred ceEEeccCCChhhHHHHHHHHHcCCCceEEecC
Q 027333 4 EVKLLKTWSSPFGLRAFWILKLKGVQFDFIDED 36 (225)
Q Consensus 4 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~ 36 (225)
.++||+.+.|.-|++.+-.|..+||+|+.+++-
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~ 34 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDIL 34 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEecc
Confidence 689999999999999999999999999999873
No 156
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=95.19 E-value=0.11 Score=34.68 Aligned_cols=71 Identities=15% Similarity=0.146 Sum_probs=43.8
Q ss_pred CCCceEEeccCCChh------hHHHHHHHHHcCCCceEEecCCCC-CChhhhhhC---------CCCCcccEEEeCCeee
Q 027333 1 MAEEVKLLKTWSSPF------GLRAFWILKLKGVQFDFIDEDLSN-KSPLLLQSN---------PVYKKVPVLIHNGKPI 64 (225)
Q Consensus 1 M~~~~~Ly~~~~sp~------~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~~~~~---------p~~g~vP~L~~~g~~l 64 (225)
|. +++|....++. .+++..+|+.++|+|+.+++...+ ...+.++.. +. ...|-+..|+..+
T Consensus 1 m~--I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~-~lpPqiF~~~~Y~ 77 (99)
T PF04908_consen 1 MV--IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGK-PLPPQIFNGDEYC 77 (99)
T ss_dssp -S--EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT---S-EEEETTEEE
T ss_pred CE--EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCC-CCCCEEEeCCEEE
Confidence 65 89998876654 558999999999999999997752 233344333 22 2346788888888
Q ss_pred eehHHHHHHH
Q 027333 65 SESLVILEYV 74 (225)
Q Consensus 65 ~es~~I~~yL 74 (225)
.+-..+.+.-
T Consensus 78 Gdye~f~ea~ 87 (99)
T PF04908_consen 78 GDYEDFEEAN 87 (99)
T ss_dssp EEHHHHHHHH
T ss_pred eeHHHHHHHH
Confidence 8776666543
No 157
>PHA02125 thioredoxin-like protein
Probab=94.93 E-value=0.12 Score=32.47 Aligned_cols=51 Identities=16% Similarity=0.242 Sum_probs=36.8
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEEe
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIH 59 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~ 59 (225)
+.+|+.++|+.|+.+.-.|+ ++.++...+|.+. ..++.+..-- ..+|++..
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~--~~~~~~~~vd~~~-~~~l~~~~~v-~~~PT~~~ 52 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLA--NVEYTYVDVDTDE-GVELTAKHHI-RSLPTLVN 52 (75)
T ss_pred EEEEECCCCHhHHHHHHHHH--HHhheEEeeeCCC-CHHHHHHcCC-ceeCeEEC
Confidence 68999999999999887775 4567777777554 3344444444 57999984
No 158
>PRK10853 putative reductase; Provisional
Probab=94.91 E-value=0.048 Score=37.74 Aligned_cols=32 Identities=22% Similarity=0.207 Sum_probs=30.1
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecC
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDED 36 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~ 36 (225)
+++|+.+.|.-|++++-+|+..|++|+.+++-
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~ 33 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYR 33 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehc
Confidence 79999999999999999999999999999863
No 159
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=94.85 E-value=0.072 Score=31.07 Aligned_cols=54 Identities=28% Similarity=0.263 Sum_probs=36.6
Q ss_pred eEEeccCCChhhHHHHHHHH-----HcCCCceEEecCCCCCChhhhhhCCCCCcccEEEe
Q 027333 5 VKLLKTWSSPFGLRAFWILK-----LKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIH 59 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~-----~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~ 59 (225)
+.+|+..+|++|++.+..+. ..++.+..+.++............+. ..+|+++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGV-GGVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCC-ccccEEEE
Confidence 36788889999999999999 45666666665543322222235565 78999984
No 160
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=94.63 E-value=0.14 Score=33.44 Aligned_cols=57 Identities=16% Similarity=0.147 Sum_probs=37.7
Q ss_pred eEEeccCCChhhHHHHHHHHHc-----CCCceEEecCCCCCChhhhhhCCCCCcccEEEeCCeeee
Q 027333 5 VKLLKTWSSPFGLRAFWILKLK-----GVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHNGKPIS 65 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~ 65 (225)
+.+|..++||+|..+.-++... ++.+..++++ +..+...+.+= ..+|.++.||..+.
T Consensus 16 i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~--~~~e~a~~~~V--~~vPt~vidG~~~~ 77 (89)
T cd03026 16 FETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGA--LFQDEVEERGI--MSVPAIFLNGELFG 77 (89)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhH--hCHHHHHHcCC--ccCCEEEECCEEEE
Confidence 6788999999999877766554 5566666554 33333334443 36999998776544
No 161
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=94.38 E-value=0.068 Score=36.60 Aligned_cols=31 Identities=10% Similarity=0.191 Sum_probs=29.3
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEec
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDE 35 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v 35 (225)
++||+.+.|.-|++++-.|...|++|+.+++
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di 31 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEY 31 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEec
Confidence 5899999999999999999999999999876
No 162
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=94.25 E-value=0.075 Score=36.54 Aligned_cols=32 Identities=13% Similarity=0.121 Sum_probs=29.7
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecC
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDED 36 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~ 36 (225)
++||+.+.|.-|++++-.|...|++|+.+++.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999998763
No 163
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=92.60 E-value=0.42 Score=32.40 Aligned_cols=68 Identities=19% Similarity=0.230 Sum_probs=43.5
Q ss_pred CChhhHHHHHHHHHc---CCCceEEecCCCCCChhhh-hhCCCCCcccEEEe-CCe-------------eeeehHHHHHH
Q 027333 12 SSPFGLRAFWILKLK---GVQFDFIDEDLSNKSPLLL-QSNPVYKKVPVLIH-NGK-------------PISESLVILEY 73 (225)
Q Consensus 12 ~sp~~~~vr~~l~~~---gi~~~~~~v~~~~~~~~~~-~~~p~~g~vP~L~~-~g~-------------~l~es~~I~~y 73 (225)
.||.|..+.=+|... .-..+++.|+..-...... -+..-+..+|+|+- +|. .|.++..|++|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~ 102 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRY 102 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHH
Confidence 577888877777653 2235555565543333322 22222256999993 333 79999999999
Q ss_pred HHhhcC
Q 027333 74 VDETWK 79 (225)
Q Consensus 74 L~~~~~ 79 (225)
|.++|+
T Consensus 103 La~r~g 108 (112)
T PF11287_consen 103 LAERHG 108 (112)
T ss_pred HHHHcC
Confidence 999987
No 164
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=92.07 E-value=0.34 Score=35.76 Aligned_cols=38 Identities=34% Similarity=0.324 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhcCCC---cccccCC-CChhhhhHHHHHHHH
Q 027333 126 LAIETLKFLEEELKGK---RFFGGEK-IGLPDLALGWLANLI 163 (225)
Q Consensus 126 ~l~~~l~~le~~L~~~---~fl~G~~-~t~aD~~l~~~l~~~ 163 (225)
...+.+..|++.|++. .|++|+. +|-+||.+++.|.-+
T Consensus 112 ~a~~~l~~L~~~L~~~~~~~~~f~~~~psslD~L~~ayL~l~ 153 (168)
T PF11801_consen 112 LAMECLSLLEELLGEWEEARYFFGDSKPSSLDCLAFAYLALL 153 (168)
T ss_pred HHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHH
Confidence 4567899999999887 9999977 999999999977765
No 165
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=91.64 E-value=0.75 Score=28.89 Aligned_cols=57 Identities=19% Similarity=0.248 Sum_probs=36.7
Q ss_pred eEEeccCCChhhHHHHH----HHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeeh
Q 027333 5 VKLLKTWSSPFGLRAFW----ILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHNGKPISES 67 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~----~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es 67 (225)
+++ ..+.||+|..+.- ++...|+.++.+.+ .+ .++..+.+= ..+|+++.||...+..
T Consensus 3 I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~--~~-~~~~~~ygv--~~vPalvIng~~~~~G 63 (76)
T PF13192_consen 3 IKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDI--ED-FEEIEKYGV--MSVPALVINGKVVFVG 63 (76)
T ss_dssp EEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEET--TT-HHHHHHTT---SSSSEEEETTEEEEES
T ss_pred EEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc--cC-HHHHHHcCC--CCCCEEEECCEEEEEe
Confidence 777 4556999995544 55667888877776 22 344444433 4799999888665443
No 166
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=87.42 E-value=0.78 Score=31.14 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=23.1
Q ss_pred eccCCChhhHHHHHHHHHcCCCceEEecC
Q 027333 8 LKTWSSPFGLRAFWILKLKGVQFDFIDED 36 (225)
Q Consensus 8 y~~~~sp~~~~vr~~l~~~gi~~~~~~v~ 36 (225)
|+.+.|.-|++++-+|+..|++|+.+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 78899999999999999999999999873
No 167
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.20 E-value=2.3 Score=32.63 Aligned_cols=71 Identities=18% Similarity=0.148 Sum_probs=52.7
Q ss_pred ceEEe-----ccCCChhhHHHHHHHHHcCCCceEEecCCCC-CChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 027333 4 EVKLL-----KTWSSPFGLRAFWILKLKGVQFDFIDEDLSN-KSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVD 75 (225)
Q Consensus 4 ~~~Ly-----~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~ 75 (225)
++.|| ..|.|+|++.+--.|...|++|+..+|--++ -+..++..+-+ -.+|=|-.+|..+.+...|..-+.
T Consensus 140 ~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdW-PTfPQlyI~GEFiGGlDIl~~m~~ 216 (227)
T KOG0911|consen 140 PVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDW-PTFPQLYVKGEFIGGLDILKEMHE 216 (227)
T ss_pred eEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCC-CCccceeECCEeccCcHHHHHHhh
Confidence 45555 4578999999999999999999999885432 12223345555 579999999999998887776543
No 168
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=85.31 E-value=4.6 Score=27.99 Aligned_cols=33 Identities=9% Similarity=0.107 Sum_probs=22.4
Q ss_pred eEEeccCCChhhHHHHHH----HHHcCCCceEEecCC
Q 027333 5 VKLLKTWSSPFGLRAFWI----LKLKGVQFDFIDEDL 37 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~----l~~~gi~~~~~~v~~ 37 (225)
+..|+.++||+|+.+.=. ....++++-.+.++-
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~ 63 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSEN 63 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCC
Confidence 456788999999974443 444556666666653
No 169
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=84.49 E-value=0.65 Score=35.73 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCCCcccccCCCChhhhhHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHcCchhh
Q 027333 128 IETLKFLEEELKGKRFFGGEKIGLPDLALGWLANLIGVFEEVIGVKLIEKERFPLLSAWMQEFAEAPVIK 197 (225)
Q Consensus 128 ~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~ 197 (225)
...++.++..|.+++|..|.+++-.|+.+|..+.. +.. ...+++..+|++.+.+.-...
T Consensus 10 ~~glk~l~~sLA~ks~~~g~~~s~edv~vf~al~~----------ep~-s~~~v~~~~w~~~l~a~~~~~ 68 (231)
T KOG1668|consen 10 PAGLKKLNKSLAEKSYIEGYQLSKEDVVVFAALGV----------EPQ-SARLVNAERWYSKLEALLRLL 68 (231)
T ss_pred hhhhhhhhHhhhcccCCCCCCcccccceeehhccc----------Ccc-hhhhhHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999998885422 111 346788888888877754443
No 170
>PF11417 Inhibitor_G39P: Loader and inhibitor of phage G40P; InterPro: IPR024424 G39P inhibits the initiation of DNA replication by blocking G40P replicative helicase. G39P has a bipartite stricture consisting of a folded N-terminal domain and an unfolded C-terminal domain. The C-terminal is essential for helicase interaction [].; PDB: 1NO1_B.
Probab=84.44 E-value=4.8 Score=25.04 Aligned_cols=37 Identities=19% Similarity=0.449 Sum_probs=24.9
Q ss_pred ehHHHHHHHHhhcCC--CCCCCCCHHHHHHHHHHHHHccch
Q 027333 66 ESLVILEYVDETWKQ--NPLLPEDPYERARARFWAKFGDDK 104 (225)
Q Consensus 66 es~~I~~yL~~~~~~--~~l~p~~~~~~a~~~~~~~~~~~~ 104 (225)
|..-|+.++...||. ..+.+.+. +..++.|.+...+.
T Consensus 5 E~~~ll~~I~~aYP~~~~~f~~~~~--k~~v~~W~~~L~d~ 43 (71)
T PF11417_consen 5 ETAKLLKLIKAAYPQWAGNFKPTDS--KETVDLWYDMLKDY 43 (71)
T ss_dssp HHHHHHHHHHHHST---TT---STH--HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCcchhccchhhH--HHHHHHHHHHHHhC
Confidence 566789999999993 34555553 67788888877665
No 171
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=81.29 E-value=12 Score=24.18 Aligned_cols=69 Identities=25% Similarity=0.315 Sum_probs=41.5
Q ss_pred eEEeccCCChhhHHHHHHHH-----HcCCCceEEecCCCCCChhhhhhCCCCCcccEEE--eCCeee------eehHHHH
Q 027333 5 VKLLKTWSSPFGLRAFWILK-----LKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLI--HNGKPI------SESLVIL 71 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~-----~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~l------~es~~I~ 71 (225)
+..++.++|+.|+...-.+. +.+ ++....+|... ...+.+.--. ..+|.+. .+|..+ .+...|.
T Consensus 21 vv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~-~~~l~~~~~v-~~~Pt~~~~~~g~~~~~~~g~~~~~~l~ 97 (103)
T PF00085_consen 21 VVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDE-NKELCKKYGV-KSVPTIIFFKNGKEVKRYNGPRNAESLI 97 (103)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT-SHHHHHHTTC-SSSSEEEEEETTEEEEEEESSSSHHHHH
T ss_pred EEEEeCCCCCccccccceeccccccccc-ccccchhhhhc-cchhhhccCC-CCCCEEEEEECCcEEEEEECCCCHHHHH
Confidence 45678899999998764442 332 55666666553 3444444444 5799997 466443 2345666
Q ss_pred HHHHh
Q 027333 72 EYVDE 76 (225)
Q Consensus 72 ~yL~~ 76 (225)
.+|.+
T Consensus 98 ~~i~~ 102 (103)
T PF00085_consen 98 EFIEK 102 (103)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 66654
No 172
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=80.73 E-value=9.7 Score=24.79 Aligned_cols=58 Identities=10% Similarity=0.084 Sum_probs=33.4
Q ss_pred eEEeccCCChhhHHHHHHHHH----cCCCceEEecCCCCCChhhhhhCCCCCcccEEE--eCCeee
Q 027333 5 VKLLKTWSSPFGLRAFWILKL----KGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLI--HNGKPI 64 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~l 64 (225)
+.+|+.++|+.|+...-.+.. .+-.+....+|.+. .+++....-. ..+|++. .+|..+
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~-~~~l~~~~~v-~~vPt~~i~~~g~~v 80 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE-DQEIAEAAGI-MGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCC-CHHHHHHCCC-eeccEEEEEECCeEE
Confidence 456778999999987766644 12134445555443 3333333222 4699886 466544
No 173
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=79.42 E-value=12 Score=23.17 Aligned_cols=54 Identities=24% Similarity=0.193 Sum_probs=34.0
Q ss_pred eEEeccCCChhhHHHHHHHHH-----cCCCceEEecCCCCCChhhhhhCCCCCcccEEE--eCCe
Q 027333 5 VKLLKTWSSPFGLRAFWILKL-----KGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLI--HNGK 62 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~ 62 (225)
+.+++.++|+.|+...-.+.. .++.+-.+..+- ...+...... ..+|++. .+|.
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~v-~~~P~~~~~~~g~ 74 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDE---NPELAEEYGV-RSIPTFLFFKNGK 74 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCC---ChhHHHhcCc-ccccEEEEEECCE
Confidence 567788899999988777766 566555555442 2333333333 4699886 4564
No 174
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=77.40 E-value=9.3 Score=27.15 Aligned_cols=75 Identities=13% Similarity=0.002 Sum_probs=48.2
Q ss_pred ceEEeccCCChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeee---hHHHHHHHHhhc
Q 027333 4 EVKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHNGKPISE---SLVILEYVDETW 78 (225)
Q Consensus 4 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~e---s~~I~~yL~~~~ 78 (225)
++..|.+|.|+.|...--.++.+|+.+..+..+....-..-..+-+.....=+.+.+|..+=+ -.+|.+.|++..
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll~~~p 104 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLLAEKP 104 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcHHHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHHhCCC
Confidence 588999999999999999999999988888765431100001110000223345556655433 578999998876
No 175
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=77.21 E-value=2 Score=29.73 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=13.6
Q ss_pred cccEEEe--CCeeeeehHHHHHHHHhhcC
Q 027333 53 KVPVLIH--NGKPISESLVILEYVDETWK 79 (225)
Q Consensus 53 ~vP~L~~--~g~~l~es~~I~~yL~~~~~ 79 (225)
.-|-|.+ +|..+.|+.||++|+..-|.
T Consensus 35 ~~~~L~~~~~gF~L~e~NAIvrYl~nDF~ 63 (122)
T PF09635_consen 35 SGPLLKDKKSGFELFEPNAIVRYLANDFE 63 (122)
T ss_dssp -S--EEE-S--S----HHHHHHHHTT--T
T ss_pred ccceeeecCCceEEecccHHHHHHHhhcC
Confidence 4578854 67999999999999999765
No 176
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=76.35 E-value=8.3 Score=25.42 Aligned_cols=52 Identities=13% Similarity=0.006 Sum_probs=30.0
Q ss_pred eEEeccCCChhhHHHHHHH--------HHcCCCceEEecCCCCC---ChhhhhhCCCCCcccEEE
Q 027333 5 VKLLKTWSSPFGLRAFWIL--------KLKGVQFDFIDEDLSNK---SPLLLQSNPVYKKVPVLI 58 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l--------~~~gi~~~~~~v~~~~~---~~~~~~~~p~~g~vP~L~ 58 (225)
+..|+.++|++|+...-.+ ...+ .+....+|.... ...+.+.... ..+|++.
T Consensus 15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i-~~~Pti~ 77 (104)
T cd02953 15 FVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGV-FGPPTYL 77 (104)
T ss_pred EEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCC-CCCCEEE
Confidence 4567889999999875332 2232 455555555422 2344433333 4699886
No 177
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=75.84 E-value=21 Score=23.96 Aligned_cols=57 Identities=11% Similarity=0.063 Sum_probs=31.4
Q ss_pred eEEeccCCChhhHHHHHHH-----HHcCCCceEEecCCCCCChhhhhhCCCCCcccEEE--eCCee
Q 027333 5 VKLLKTWSSPFGLRAFWIL-----KLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLI--HNGKP 63 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l-----~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~ 63 (225)
+..|+.++|+.|+...-.+ .+.|..+....++... ...+.....- ..+|++. .+|..
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~-~~~l~~~~~V-~~~Pt~~i~~~g~~ 91 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH-ERRLARKLGA-HSVPAIVGIINGQV 91 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc-cHHHHHHcCC-ccCCEEEEEECCEE
Confidence 4567889999998654333 3333334444555443 2333333333 5799887 46643
No 178
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=75.78 E-value=16 Score=24.74 Aligned_cols=58 Identities=21% Similarity=0.209 Sum_probs=36.0
Q ss_pred eEEeccCCChhhHHHHHHHHH-----cCCCceEEecCCCCCChhhhhhCCCCCcccEEE--eCCeeeee
Q 027333 5 VKLLKTWSSPFGLRAFWILKL-----KGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLI--HNGKPISE 66 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~l~e 66 (225)
+..|+.++|+-|+.+.-.+.. .++ ....+|... ..++.+...- ..+|++. .+|..+..
T Consensus 26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i--~f~~Vd~~~-~~~l~~~~~v-~~vPt~l~fk~G~~v~~ 90 (113)
T cd02989 26 VCHFYHPEFFRCKIMDKHLEILAKKHLET--KFIKVNAEK-APFLVEKLNI-KVLPTVILFKNGKTVDR 90 (113)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCCC--EEEEEEccc-CHHHHHHCCC-ccCCEEEEEECCEEEEE
Confidence 346677999999977766643 344 445555443 3344444444 5799997 47876553
No 179
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.46 E-value=11 Score=26.15 Aligned_cols=68 Identities=16% Similarity=0.136 Sum_probs=42.5
Q ss_pred ccCCChhhHH----HHHHHHHcCCCceEEecCCCCCChhhhhhCCCCC-------cccEEEe-C--CeeeeehHHHHHHH
Q 027333 9 KTWSSPFGLR----AFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYK-------KVPVLIH-N--GKPISESLVILEYV 74 (225)
Q Consensus 9 ~~~~sp~~~~----vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g-------~vP~L~~-~--g~~l~es~~I~~yL 74 (225)
+-+|||.|.+ ++=+|++.+-+...+.++..+.+.|--..||+ . -||+|.. + +..+.+.+.-...|
T Consensus 41 GqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~F-R~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~L 119 (128)
T KOG3425|consen 41 GQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPF-RKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHL 119 (128)
T ss_pred CCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCcc-ccCCCceeecceeeEEcCccccchHhHhhHHHH
Confidence 3458999985 56667777777777777666544443333443 2 2788873 3 35566666666666
Q ss_pred Hhh
Q 027333 75 DET 77 (225)
Q Consensus 75 ~~~ 77 (225)
.+.
T Consensus 120 ve~ 122 (128)
T KOG3425|consen 120 VEM 122 (128)
T ss_pred HHH
Confidence 554
No 180
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=73.47 E-value=11 Score=33.57 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=37.0
Q ss_pred eEEeccCCChhhHHHHH----HHHHc-CCCceEEecCCCCCChhhh-hhCCCCCcccEEEeCCeeee
Q 027333 5 VKLLKTWSSPFGLRAFW----ILKLK-GVQFDFIDEDLSNKSPLLL-QSNPVYKKVPVLIHNGKPIS 65 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~----~l~~~-gi~~~~~~v~~~~~~~~~~-~~~p~~g~vP~L~~~g~~l~ 65 (225)
+++|..+.||+|-.+.- ++.+. +|..+.+++... +++. +.+= ..+|.++.||.++.
T Consensus 480 i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~---~~~~~~~~v--~~vP~~~i~~~~~~ 541 (555)
T TIGR03143 480 IKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHF---PDLKDEYGI--MSVPAIVVDDQQVY 541 (555)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECccc---HHHHHhCCc--eecCEEEECCEEEE
Confidence 67888888988875443 45555 688887776542 3444 4443 46999998775543
No 181
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=73.19 E-value=13 Score=25.12 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=30.1
Q ss_pred eEEe-ccCCChhhHHHHHHHHHcCCC---ceEEecCCCCCChhhhhhCCCCCcccEEE
Q 027333 5 VKLL-KTWSSPFGLRAFWILKLKGVQ---FDFIDEDLSNKSPLLLQSNPVYKKVPVLI 58 (225)
Q Consensus 5 ~~Ly-~~~~sp~~~~vr~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~g~vP~L~ 58 (225)
++++ +.++||+|+.++-++....-. .+...++.+. .+++...-.. ..+|++.
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~-~~~l~~~~~v-~~vPt~~ 80 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDE-DKEKAEKYGV-ERVPTTI 80 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCc-CHHHHHHcCC-CcCCEEE
Confidence 4445 568999999887777643321 2333444333 3444444333 5799997
No 182
>PHA03075 glutaredoxin-like protein; Provisional
Probab=71.26 E-value=7.5 Score=26.60 Aligned_cols=70 Identities=11% Similarity=0.044 Sum_probs=50.0
Q ss_pred CCCceEEeccCCChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhc
Q 027333 1 MAEEVKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVDETW 78 (225)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~~~~ 78 (225)
|.+.+.|+|-|.|+-|+.+.-+|....=+|+...|+.-. |... .|++=+|..|+.. .==..+.+|+...+
T Consensus 1 mK~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlS----fFsK---~g~v~~lg~d~~y-~lInn~~~~lgne~ 70 (123)
T PHA03075 1 MKKTLILFGKPLCSVCESISEALKELEDEYDILRVNILS----FFSK---DGQVKVLGMDKGY-TLINNFFKHLGNEY 70 (123)
T ss_pred CCceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeee----eecc---CCceEEEecccce-ehHHHHHHhhcccE
Confidence 667799999999999999999999998899999887531 1111 1678888754311 11246777777654
No 183
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=71.00 E-value=25 Score=22.56 Aligned_cols=58 Identities=10% Similarity=-0.004 Sum_probs=35.3
Q ss_pred eEEeccCCChhhHHHHHHHHHc----CCCceEEecCCCCCChhhhhhCCCCCcccEEE--eCCeee
Q 027333 5 VKLLKTWSSPFGLRAFWILKLK----GVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLI--HNGKPI 64 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~----gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~l 64 (225)
+..|+.++|+.|++..-.+... +..+....+|......-..+.+- ..+|++. .+|..+
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i--~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEI--TAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCC--ccccEEEEEECCEEE
Confidence 3567789999999876666542 33556666665543333334444 3699887 466543
No 184
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=70.65 E-value=51 Score=26.05 Aligned_cols=66 Identities=20% Similarity=0.107 Sum_probs=44.8
Q ss_pred hHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHccchhhHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhc
Q 027333 67 SLVILEYVDETWKQNPLLPEDPYERARARFWAKFGDDKVLASIWNAFIKQGKEQEEAIGLAIETLKFLEEEL 138 (225)
Q Consensus 67 s~~I~~yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L 138 (225)
...|-..+.|... -..-|+|+...+.|..-+...-+..+..+..++ .++..++++...++.||..|
T Consensus 6 ~qLI~~lf~RL~~-ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vl-----vQE~AL~~a~~ri~eLe~ql 71 (247)
T PF09849_consen 6 RQLIDDLFSRLKQ-AEAQPRDPEAEALIAQALARQPDAPYYLAQTVL-----VQEQALKQAQARIQELEAQL 71 (247)
T ss_pred HHHHHHHHHHHHh-ccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 3445555555442 223389998888888877777666666665555 45677778888888888886
No 185
>PHA02278 thioredoxin-like protein
Probab=70.37 E-value=29 Score=23.15 Aligned_cols=58 Identities=10% Similarity=0.072 Sum_probs=31.0
Q ss_pred EEeccCCChhhHHHHHHHHHc----C--CCceEEecCCCC-CChhhhhhCCCCCcccEEE--eCCeee
Q 027333 6 KLLKTWSSPFGLRAFWILKLK----G--VQFDFIDEDLSN-KSPLLLQSNPVYKKVPVLI--HNGKPI 64 (225)
Q Consensus 6 ~Ly~~~~sp~~~~vr~~l~~~----g--i~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~--~~g~~l 64 (225)
.-|+.+||+.|+...=.+... + +++..+.++-.. ..+++.+..-- ..+|++. .+|..+
T Consensus 19 V~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I-~~iPT~i~fk~G~~v 85 (103)
T PHA02278 19 VMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDI-MSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCC-ccccEEEEEECCEEE
Confidence 345778999999766444332 1 334444444221 02334333332 4699998 477654
No 186
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=68.73 E-value=22 Score=27.22 Aligned_cols=53 Identities=15% Similarity=0.111 Sum_probs=31.9
Q ss_pred eEEeccCCChhhHHHHHHHHHcC---CCceEEecCCCCCChhhhhhCCCCCcccEEEe
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKG---VQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIH 59 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~g---i~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~ 59 (225)
+++|+.++||+|..+..++...- -..+...+|.... ++.....-- ..+|++..
T Consensus 137 I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~-~~~~~~~~V-~~vPtl~i 192 (215)
T TIGR02187 137 IEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANEN-PDLAEKYGV-MSVPKIVI 192 (215)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCC-HHHHHHhCC-ccCCEEEE
Confidence 56688999999998877666432 1233334555443 333333332 46999984
No 187
>PTZ00051 thioredoxin; Provisional
Probab=64.91 E-value=34 Score=21.93 Aligned_cols=57 Identities=11% Similarity=0.040 Sum_probs=31.6
Q ss_pred eEEeccCCChhhHHHHHHHHHc---CCCceEEecCCCCCChhhhhhCCCCCcccEEE--eCCee
Q 027333 5 VKLLKTWSSPFGLRAFWILKLK---GVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLI--HNGKP 63 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~---gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~ 63 (225)
+..|+.++|+.|+...-.+... ...+....++... ...+.+.-.. ..+|+++ .+|..
T Consensus 22 li~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~-~~~~~~~~~v-~~~Pt~~~~~~g~~ 83 (98)
T PTZ00051 22 IVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDE-LSEVAEKENI-TSMPTFKVFKNGSV 83 (98)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcc-hHHHHHHCCC-ceeeEEEEEeCCeE
Confidence 3567889999999776555442 1223444444433 2333433333 4699887 36644
No 188
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=64.76 E-value=11 Score=29.99 Aligned_cols=57 Identities=16% Similarity=0.109 Sum_probs=43.3
Q ss_pred hHHHHHHHHHcCCCceEEecCCC-CCChhhhh---h-CCCCCcccEEEeCCeeeeehHHHHHH
Q 027333 16 GLRAFWILKLKGVQFDFIDEDLS-NKSPLLLQ---S-NPVYKKVPVLIHNGKPISESLVILEY 73 (225)
Q Consensus 16 ~~~vr~~l~~~gi~~~~~~v~~~-~~~~~~~~---~-~p~~g~vP~L~~~g~~l~es~~I~~y 73 (225)
|..||.+|+-.+|.|+.++|.++ ...+++.. . .-. -.+|.+..+|..|.+...|++-
T Consensus 150 C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~-~~LPrVFV~GryIGgaeeV~~L 211 (281)
T KOG2824|consen 150 CNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKA-VSLPRVFVKGRYIGGAEEVVRL 211 (281)
T ss_pred HHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhccccc-CccCeEEEccEEeccHHHhhhh
Confidence 77899999999999999999886 23344332 2 112 4699877899999998888874
No 189
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=64.20 E-value=26 Score=23.96 Aligned_cols=16 Identities=13% Similarity=0.131 Sum_probs=12.8
Q ss_pred eEEeccCCChhhHHHH
Q 027333 5 VKLLKTWSSPFGLRAF 20 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr 20 (225)
+..|+.++||+|++..
T Consensus 18 lv~f~a~wC~~C~~~~ 33 (125)
T cd02951 18 LLLFSQPGCPYCDKLK 33 (125)
T ss_pred EEEEeCCCCHHHHHHH
Confidence 4567889999999865
No 190
>PRK09381 trxA thioredoxin; Provisional
Probab=63.44 E-value=40 Score=22.22 Aligned_cols=58 Identities=10% Similarity=-0.024 Sum_probs=32.5
Q ss_pred eEEeccCCChhhHHHHHHHH----HcCCCceEEecCCCCCChhhhhhCCCCCcccEEE--eCCeee
Q 027333 5 VKLLKTWSSPFGLRAFWILK----LKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLI--HNGKPI 64 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~----~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~l 64 (225)
+..++.++||.|+...-.++ ..+-.+....++......-..+.+. ..+|+++ .+|..+
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v--~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGI--RGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCC--CcCCEEEEEeCCeEE
Confidence 34567789999997654442 2222345555555543322233444 5799986 466544
No 191
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=63.28 E-value=37 Score=23.15 Aligned_cols=60 Identities=10% Similarity=0.005 Sum_probs=32.0
Q ss_pred eEEeccCCChhhHHHHHHHHH------cCCCceEEecCCCCCChhhhhhCCCCCcccEEE--e-CCeeee
Q 027333 5 VKLLKTWSSPFGLRAFWILKL------KGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLI--H-NGKPIS 65 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~------~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~-~g~~l~ 65 (225)
+..|+.++|+.|+...-.+.. .+..|..+.++-... +.-...+..++.+|++. + +|..+.
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~-~~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE-PKDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC-chhhhcccCCCccceEEEECCCCCCch
Confidence 345677899999977544443 233455555543221 11123344323499987 3 565543
No 192
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=61.66 E-value=29 Score=23.32 Aligned_cols=69 Identities=13% Similarity=0.207 Sum_probs=40.2
Q ss_pred EeccCCChhhHHHHHHHHHcCC--CceEEecCCCCCCh--hhhhhC---CCCCcccEEEeCCe-eeeehHHHHHHHHhh
Q 027333 7 LLKTWSSPFGLRAFWILKLKGV--QFDFIDEDLSNKSP--LLLQSN---PVYKKVPVLIHNGK-PISESLVILEYVDET 77 (225)
Q Consensus 7 Ly~~~~sp~~~~vr~~l~~~gi--~~~~~~v~~~~~~~--~~~~~~---p~~g~vP~L~~~g~-~l~es~~I~~yL~~~ 77 (225)
|++...||+|.+..-.+...+. .++.+.+......+ ....++ .. ..+-+ ..+|. ...++.|+..-+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~-~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDAD-SRLHL-IDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHc-CeeEE-ecCCCEEEEcHHHHHHHHHHc
Confidence 5778899999988877777765 34444442111111 111222 22 23333 55665 999999999875553
No 193
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=59.89 E-value=14 Score=27.26 Aligned_cols=35 Identities=11% Similarity=0.161 Sum_probs=27.0
Q ss_pred ceEEeccCCChhhH----HHHHHHHHc-CCCceEEecCCC
Q 027333 4 EVKLLKTWSSPFGL----RAFWILKLK-GVQFDFIDEDLS 38 (225)
Q Consensus 4 ~~~Ly~~~~sp~~~----~vr~~l~~~-gi~~~~~~v~~~ 38 (225)
++++|+...||||. +++-+++.. ++.++.+.+.+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 47899999999987 455555666 888888888664
No 194
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=58.28 E-value=83 Score=25.60 Aligned_cols=73 Identities=11% Similarity=0.146 Sum_probs=46.9
Q ss_pred eEEeccCCChhhHHHHHHHH----HcCCCceEEecCCCCCChhhhhhCCCCCcccEEE--eCCeeeee------hHHHHH
Q 027333 5 VKLLKTWSSPFGLRAFWILK----LKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLI--HNGKPISE------SLVILE 72 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~----~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~l~e------s~~I~~ 72 (225)
+.+|+.++|+-|....=.|+ ..+=.|....|+.+.. +......-. ..||++. .+|.+|.+ -..|.+
T Consensus 47 lV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~-p~vAaqfgi-qsIPtV~af~dGqpVdgF~G~qPesqlr~ 124 (304)
T COG3118 47 LVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAE-PMVAAQFGV-QSIPTVYAFKDGQPVDGFQGAQPESQLRQ 124 (304)
T ss_pred EEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcc-hhHHHHhCc-CcCCeEEEeeCCcCccccCCCCcHHHHHH
Confidence 45667788888886544443 3455678888887653 344443333 5799987 46655544 357888
Q ss_pred HHHhhcC
Q 027333 73 YVDETWK 79 (225)
Q Consensus 73 yL~~~~~ 79 (225)
+|++..+
T Consensus 125 ~ld~~~~ 131 (304)
T COG3118 125 FLDKVLP 131 (304)
T ss_pred HHHHhcC
Confidence 9988765
No 195
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=58.12 E-value=15 Score=32.27 Aligned_cols=72 Identities=14% Similarity=0.083 Sum_probs=40.9
Q ss_pred ceEEeccCCChhhHHHHHHHHHcCC---CceEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeeeh----HHHHHHHHh
Q 027333 4 EVKLLKTWSSPFGLRAFWILKLKGV---QFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHNGKPISES----LVILEYVDE 76 (225)
Q Consensus 4 ~~~Ly~~~~sp~~~~vr~~l~~~gi---~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es----~~I~~yL~~ 76 (225)
.+++|..+.||||-.+.-++....+ .++...++-...++...+.+= ..||.+..+|..+.+. ..+++.+.+
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v--~~VP~~~i~~~~~~~g~~~~~~~~~~l~~ 197 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGI--QGVPAVFLNGEEFHNGRMDLAELLEKLEE 197 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCC--cccCEEEECCcEEEecCCCHHHHHHHHhh
Confidence 3779999999999876666544332 233333443333333333333 4799999777555542 344455544
Q ss_pred h
Q 027333 77 T 77 (225)
Q Consensus 77 ~ 77 (225)
.
T Consensus 198 ~ 198 (515)
T TIGR03140 198 T 198 (515)
T ss_pred c
Confidence 3
No 196
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=57.40 E-value=46 Score=25.40 Aligned_cols=57 Identities=16% Similarity=0.211 Sum_probs=33.5
Q ss_pred eEEecc---CCChhhHHHHHHHHHc-----CCCceEEecCCCCCChhhhhhCCCCCcccEEE--eCCee
Q 027333 5 VKLLKT---WSSPFGLRAFWILKLK-----GVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLI--HNGKP 63 (225)
Q Consensus 5 ~~Ly~~---~~sp~~~~vr~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~ 63 (225)
+.+|.. +|||.|+.+.-.++.. ++.+..+.++.+. ..++.+..-- ..+|++. .+|..
T Consensus 23 i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~-~~~l~~~~~V-~~~Pt~~~f~~g~~ 89 (215)
T TIGR02187 23 IVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPE-DKEEAEKYGV-ERVPTTIILEEGKD 89 (215)
T ss_pred EEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcc-cHHHHHHcCC-CccCEEEEEeCCee
Confidence 567777 8999999777666444 3444455555433 2333333333 4699997 35533
No 197
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=57.06 E-value=51 Score=21.36 Aligned_cols=56 Identities=11% Similarity=-0.021 Sum_probs=31.4
Q ss_pred eEEeccCCChhhHHHHHHHHHcCC----CceEEecCCCCCChhhhhhCCCCCcccEEE--eCCe
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGV----QFDFIDEDLSNKSPLLLQSNPVYKKVPVLI--HNGK 62 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi----~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~ 62 (225)
+..|+.++|+.|+...-.+....- .+....+|.... +.+.+..-- ..+|++. .+|.
T Consensus 22 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~-~~~~~~~~v-~~~Pt~~~~~~g~ 83 (101)
T cd03003 22 FVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD-RMLCRSQGV-NSYPSLYVFPSGM 83 (101)
T ss_pred EEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCcc-HHHHHHcCC-CccCEEEEEcCCC
Confidence 456788999999976554432211 244555665542 333333333 5799986 3553
No 198
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=56.90 E-value=18 Score=31.79 Aligned_cols=72 Identities=17% Similarity=0.096 Sum_probs=41.0
Q ss_pred ceEEeccCCChhhHHHHHHHHHcCC---CceEEecCCCCCChhhhhhCCCCCcccEEEeCCeeeee----hHHHHHHHHh
Q 027333 4 EVKLLKTWSSPFGLRAFWILKLKGV---QFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHNGKPISE----SLVILEYVDE 76 (225)
Q Consensus 4 ~~~Ly~~~~sp~~~~vr~~l~~~gi---~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~e----s~~I~~yL~~ 76 (225)
.+++|..+.||||-.+.-++...-+ ..+...++-.+. +++...--. ..||.+..+|..+.+ -..++..+.+
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~-~~~~~~~~v-~~VP~~~i~~~~~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALF-QDEVEARNI-MAVPTVFLNGEEFGQGRMTLEEILAKLDT 196 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhC-HhHHHhcCC-cccCEEEECCcEEEecCCCHHHHHHHHhc
Confidence 3789999999999876655544322 233333333333 333333233 479999977755554 2455566654
Q ss_pred h
Q 027333 77 T 77 (225)
Q Consensus 77 ~ 77 (225)
.
T Consensus 197 ~ 197 (517)
T PRK15317 197 G 197 (517)
T ss_pred c
Confidence 3
No 199
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=56.18 E-value=51 Score=21.87 Aligned_cols=53 Identities=15% Similarity=0.151 Sum_probs=29.8
Q ss_pred eEEeccCCChhhHHHHHHH-----HHcCCCceEEecCCCCCChhhh-hhCCCCCcccEEE
Q 027333 5 VKLLKTWSSPFGLRAFWIL-----KLKGVQFDFIDEDLSNKSPLLL-QSNPVYKKVPVLI 58 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l-----~~~gi~~~~~~v~~~~~~~~~~-~~~p~~g~vP~L~ 58 (225)
+..|+.++||.|+...-.+ .+.+..+....++.+.....+. +.... ..+|++.
T Consensus 25 lv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v-~~~Pti~ 83 (109)
T cd02993 25 LVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQL-KSFPTIL 83 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCC-CcCCEEE
Confidence 5677889999999654333 2233345555555443222332 22333 5699886
No 200
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=54.32 E-value=59 Score=21.27 Aligned_cols=56 Identities=16% Similarity=0.046 Sum_probs=29.5
Q ss_pred eEEeccCCChhhHHHHHHHHH----cC-CCceEEecCCCCCChhhhhhCCCCCcccEEE--eCCee
Q 027333 5 VKLLKTWSSPFGLRAFWILKL----KG-VQFDFIDEDLSNKSPLLLQSNPVYKKVPVLI--HNGKP 63 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~----~g-i~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~ 63 (225)
+..|+.+||+.|+...-.+.. .+ -......++.+ ..+..+..-- ..+|++. .+|..
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d--~~~~~~~~~v-~~~Pt~~~~~~g~~ 83 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD--TIDTLKRYRG-KCEPTFLFYKNGEL 83 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC--CHHHHHHcCC-CcCcEEEEEECCEE
Confidence 346678999999976544432 22 12333344433 2233333323 4689886 46654
No 201
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=53.84 E-value=79 Score=22.83 Aligned_cols=60 Identities=18% Similarity=0.202 Sum_probs=33.5
Q ss_pred eEEeccCCChhhHHHHHHHHH-----cCCCceEEecCCCCCChhhhhh-CCCC----CcccEEE--eCCeeee
Q 027333 5 VKLLKTWSSPFGLRAFWILKL-----KGVQFDFIDEDLSNKSPLLLQS-NPVY----KKVPVLI--HNGKPIS 65 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~-----~gi~~~~~~v~~~~~~~~~~~~-~p~~----g~vP~L~--~~g~~l~ 65 (225)
+..|+.++||.|+...-.+.. .+-.+....||.+.. ++..+. +-.. +++|++. .+|..+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~-~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF-PNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC-HHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 456788899999976544432 223355566665543 233322 2110 2389987 5776654
No 202
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=50.66 E-value=51 Score=22.08 Aligned_cols=62 Identities=18% Similarity=0.136 Sum_probs=35.0
Q ss_pred EEeccCCChhhHHHHHHHHH-----cCCCceEEecCCCCCChhhhhhCCCCCcccEEE--eCCeeeeehHHHHH
Q 027333 6 KLLKTWSSPFGLRAFWILKL-----KGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLI--HNGKPISESLVILE 72 (225)
Q Consensus 6 ~Ly~~~~sp~~~~vr~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~l~es~~I~~ 72 (225)
..|+.++|+.|+.+.-.++. .++. ...+|.... .+.+.--- ..+|++. .+|..+........
T Consensus 29 v~F~a~~c~~C~~l~~~l~~la~~~~~v~--f~~vd~~~~--~l~~~~~i-~~~Pt~~~f~~G~~v~~~~G~~~ 97 (113)
T cd02957 29 VHFYEPGFPRCKILDSHLEELAAKYPETK--FVKINAEKA--FLVNYLDI-KVLPTLLVYKNGELIDNIVGFEE 97 (113)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCcE--EEEEEchhh--HHHHhcCC-CcCCEEEEEECCEEEEEEecHHH
Confidence 45778899999976655543 3443 344444332 33333222 4699997 47766555444333
No 203
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=50.42 E-value=18 Score=25.08 Aligned_cols=60 Identities=17% Similarity=0.220 Sum_probs=27.2
Q ss_pred ccCCChhhHHHH----HHHHHcCCCceEEecCCCCCC------hhhhhhCC---CCCcccEEE--eCCeeeeehHHH
Q 027333 9 KTWSSPFGLRAF----WILKLKGVQFDFIDEDLSNKS------PLLLQSNP---VYKKVPVLI--HNGKPISESLVI 70 (225)
Q Consensus 9 ~~~~sp~~~~vr----~~l~~~gi~~~~~~v~~~~~~------~~~~~~~p---~~g~vP~L~--~~g~~l~es~~I 70 (225)
+..|||.|+++. -++....-....+.+...+.. -.|+. +| . ..||+|+ .++..|.|....
T Consensus 34 g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~-~p~~~l-~~IPTLi~~~~~~rL~e~e~~ 108 (119)
T PF06110_consen 34 GQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRT-DPDLKL-KGIPTLIRWETGERLVEEECL 108 (119)
T ss_dssp S-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH---CC----SSSEEEECTSS-EEEHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceE-cceeee-eecceEEEECCCCccchhhhc
Confidence 446899999765 444443223444433332211 12332 22 2 3599998 345566665443
No 204
>PRK10996 thioredoxin 2; Provisional
Probab=49.87 E-value=88 Score=21.97 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=33.5
Q ss_pred eEEeccCCChhhHHHHHHHHH----cCCCceEEecCCCCCChhhhhhCCCCCcccEEE--eCCeee
Q 027333 5 VKLLKTWSSPFGLRAFWILKL----KGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLI--HNGKPI 64 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~l 64 (225)
+..|+.++|+.|+...-.+.. .+-.+....+|.... +.+.+..-. ..+|++. .+|..+
T Consensus 56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~-~~l~~~~~V-~~~Ptlii~~~G~~v 119 (139)
T PRK10996 56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAE-RELSARFRI-RSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCC-HHHHHhcCC-CccCEEEEEECCEEE
Confidence 456778899999975443332 233455566666543 344433333 4699987 466543
No 205
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=48.33 E-value=80 Score=21.63 Aligned_cols=56 Identities=11% Similarity=0.041 Sum_probs=31.9
Q ss_pred EeccCCChhhHHHHHHHHHcCCC----ceEEecCCCCCChhhhhhCCCCCcccEEE--eCCeee
Q 027333 7 LLKTWSSPFGLRAFWILKLKGVQ----FDFIDEDLSNKSPLLLQSNPVYKKVPVLI--HNGKPI 64 (225)
Q Consensus 7 Ly~~~~sp~~~~vr~~l~~~gi~----~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~l 64 (225)
-|+.+|||.|+.+.-.+...--. .....||.++ .+++...--- ..+|++. .+|..+
T Consensus 20 ~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~-~~~la~~~~V-~~iPTf~~fk~G~~v 81 (114)
T cd02954 20 RFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE-VPDFNKMYEL-YDPPTVMFFFRNKHM 81 (114)
T ss_pred EEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC-CHHHHHHcCC-CCCCEEEEEECCEEE
Confidence 36778999999776555332211 2344555544 3344444333 4699997 477554
No 206
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=47.36 E-value=29 Score=26.34 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=24.9
Q ss_pred ceEEeccCCChhhH----HHHHHHHHcCCCceEEecCC
Q 027333 4 EVKLLKTWSSPFGL----RAFWILKLKGVQFDFIDEDL 37 (225)
Q Consensus 4 ~~~Ly~~~~sp~~~----~vr~~l~~~gi~~~~~~v~~ 37 (225)
++.+|+...||||. +++-++...+++++.+.+.+
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 68899999999987 34555556677777776644
No 207
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=45.76 E-value=98 Score=21.33 Aligned_cols=55 Identities=20% Similarity=0.176 Sum_probs=27.8
Q ss_pred CCChhhHHHHH----HHHHcCCCceEEecCCCCC------ChhhhhhCCCCC-cccEEE--eCCeeeee
Q 027333 11 WSSPFGLRAFW----ILKLKGVQFDFIDEDLSNK------SPLLLQSNPVYK-KVPVLI--HNGKPISE 66 (225)
Q Consensus 11 ~~sp~~~~vr~----~l~~~gi~~~~~~v~~~~~------~~~~~~~~p~~g-~vP~L~--~~g~~l~e 66 (225)
.|||.|+.+.- +....+-.+..+.|+.++. ...+...--. . .+|++. .+|..+.|
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I-~~~iPT~~~~~~~~~l~~ 105 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL-TTGVPTLLRWKTPQRLVE 105 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc-ccCCCEEEEEcCCceecc
Confidence 69999996543 3333332344455554321 2333332221 3 599997 34544444
No 208
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=45.27 E-value=86 Score=20.53 Aligned_cols=58 Identities=12% Similarity=0.109 Sum_probs=30.2
Q ss_pred EEeccCCChhhHHHHHHHHHcC---CCceEEecCCCCCC--hhhhhhCCCCCcccEEE--eCCeee
Q 027333 6 KLLKTWSSPFGLRAFWILKLKG---VQFDFIDEDLSNKS--PLLLQSNPVYKKVPVLI--HNGKPI 64 (225)
Q Consensus 6 ~Ly~~~~sp~~~~vr~~l~~~g---i~~~~~~v~~~~~~--~~~~~~~p~~g~vP~L~--~~g~~l 64 (225)
..|+.+||+.|+...-.+.... -.+....++.+... .++.+..-- ..+|++. .+|..+
T Consensus 20 v~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V-~~~Pt~~~~~~G~~v 84 (103)
T cd02985 20 LEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKI-IEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCC-CcCCEEEEEeCCeEE
Confidence 4567789999986554443211 12334444443321 244433333 4699887 366543
No 209
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=44.95 E-value=79 Score=19.99 Aligned_cols=56 Identities=14% Similarity=0.097 Sum_probs=30.3
Q ss_pred eEEeccCCChhhHHHHHHHHH----cCCCceEEecCCCCCChhhhhhCCCCCcccEEE--eCCe
Q 027333 5 VKLLKTWSSPFGLRAFWILKL----KGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLI--HNGK 62 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~ 62 (225)
+..++.++|+.|+...-.+.. .+-.+....+|......-..+.+- ..+|++. .+|.
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v--~~~P~~~~~~~g~ 79 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGI--RSIPTLLLFKNGK 79 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCC--CcCCEEEEEeCCc
Confidence 345677899999976544433 222345555554432222233333 4699887 3553
No 210
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=43.85 E-value=84 Score=19.97 Aligned_cols=57 Identities=21% Similarity=0.204 Sum_probs=32.7
Q ss_pred eEEeccCCChhhHHHHHHHHHc----CCCceEEecCCCCCChhhhhhCCCCCcccEEE--eCCee
Q 027333 5 VKLLKTWSSPFGLRAFWILKLK----GVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLI--HNGKP 63 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~----gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~ 63 (225)
+..++.++|+.|+...-.+... +-.+....+|.+. ...+.+.-.. ..+|+++ .+|..
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~~l~~~~~i-~~~Pt~~~~~~g~~ 78 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA-QPQIAQQFGV-QALPTVYLFAAGQP 78 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC-CHHHHHHcCC-CCCCEEEEEeCCEE
Confidence 3456778999999765555432 2134455566554 3344433333 4699997 56644
No 211
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=43.25 E-value=1.2e+02 Score=21.47 Aligned_cols=59 Identities=12% Similarity=0.031 Sum_probs=29.6
Q ss_pred eEEeccCCChhhHHHHHHHHH----cCCCceEEecCCCCC-ChhhhhhCCCCCcccEEE--e-CCeee
Q 027333 5 VKLLKTWSSPFGLRAFWILKL----KGVQFDFIDEDLSNK-SPLLLQSNPVYKKVPVLI--H-NGKPI 64 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~----~gi~~~~~~v~~~~~-~~~~~~~~p~~g~vP~L~--~-~g~~l 64 (225)
+..|+.+||+.|+...-.+.. .+-.+..+.++.+.. ...+....-. ..+|+++ + +|.++
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V-~~iPt~v~~~~~G~~v 90 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRV-DGIPHFVFLDREGNEE 90 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCC-CCCCEEEEECCCCCEE
Confidence 345677899999876544432 222233444443321 1223322222 4589886 3 56544
No 212
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=42.54 E-value=28 Score=23.04 Aligned_cols=34 Identities=15% Similarity=0.019 Sum_probs=19.7
Q ss_pred eEEeccCCChhhHHHHHHHHH-------cCCCceEEecCCC
Q 027333 5 VKLLKTWSSPFGLRAFWILKL-------KGVQFDFIDEDLS 38 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~-------~gi~~~~~~v~~~ 38 (225)
+.+|+.++||+|++..-.+.. ..-.+..+.++..
T Consensus 9 v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (112)
T PF13098_consen 9 VVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNID 49 (112)
T ss_dssp EEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecC
Confidence 456788999999987555542 1113556666554
No 213
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=41.80 E-value=33 Score=25.69 Aligned_cols=22 Identities=18% Similarity=0.058 Sum_probs=18.0
Q ss_pred ceEEeccCCChhhHHHHHHHHH
Q 027333 4 EVKLLKTWSSPFGLRAFWILKL 25 (225)
Q Consensus 4 ~~~Ly~~~~sp~~~~vr~~l~~ 25 (225)
.+.+|..+.||||++..-.+..
T Consensus 80 ~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 80 VVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred EEEEEECCCCccHHHHHHHHhh
Confidence 3668889999999998877764
No 214
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=41.59 E-value=1e+02 Score=20.20 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=27.9
Q ss_pred eEEeccCCChhhHHHHHHHH-----HcCCCceEEecCCCCCChhhhhhCCCCCcccEEE
Q 027333 5 VKLLKTWSSPFGLRAFWILK-----LKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLI 58 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~-----~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~ 58 (225)
+..|+.++|+.|+...-.+. +.++. ...+|.....+.+.+.--. ..+|++.
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~la~~~~~~~--~~~vd~~~~~~~l~~~~~V-~~~PT~~ 77 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNALSSMFPQIR--HLAIEESSIKPSLLSRYGV-VGFPTIL 77 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHHHHHHhccCc--eEEEECCCCCHHHHHhcCC-eecCEEE
Confidence 45667889999997664443 33433 3344433122333333223 4689886
No 215
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.96 E-value=39 Score=21.32 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=21.2
Q ss_pred ChhhHHHHHHHHHcCCCceEEecC
Q 027333 13 SPFGLRAFWILKLKGVQFDFIDED 36 (225)
Q Consensus 13 sp~~~~vr~~l~~~gi~~~~~~v~ 36 (225)
-+|++|+.-.|+..||+|+..+..
T Consensus 15 vGF~rk~L~I~E~~~is~Eh~PSG 38 (76)
T cd04911 15 VGFGRKLLSILEDNGISYEHMPSG 38 (76)
T ss_pred hcHHHHHHHHHHHcCCCEeeecCC
Confidence 379999999999999999988654
No 216
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=40.62 E-value=1.5e+02 Score=21.91 Aligned_cols=63 Identities=14% Similarity=0.015 Sum_probs=34.3
Q ss_pred EeccCCChhhHHHHHHHH---HcCCCceEEecCCCCCChhhhhhCCCCCcccEEE--eCCeeeeehHHHHH
Q 027333 7 LLKTWSSPFGLRAFWILK---LKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLI--HNGKPISESLVILE 72 (225)
Q Consensus 7 Ly~~~~sp~~~~vr~~l~---~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~l~es~~I~~ 72 (225)
.|+.++|+.|+.+--.|. ..--.+..+.|+.... .+....+- ..+|++. .+|..+..-....+
T Consensus 89 ~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~--~l~~~f~v-~~vPTlllyk~G~~v~~~vG~~~ 156 (175)
T cd02987 89 HIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT--GASDEFDT-DALPALLVYKGGELIGNFVRVTE 156 (175)
T ss_pred EEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch--hhHHhCCC-CCCCEEEEEECCEEEEEEechHH
Confidence 456689999985543322 1111344455554432 34444454 5799997 47876654433333
No 217
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=40.60 E-value=98 Score=19.82 Aligned_cols=53 Identities=9% Similarity=-0.101 Sum_probs=27.4
Q ss_pred eEEeccCCChhhHHHHH----HHHHcC--CCceEEecCCCC-CChhhhhhCCCCCcccEEE
Q 027333 5 VKLLKTWSSPFGLRAFW----ILKLKG--VQFDFIDEDLSN-KSPLLLQSNPVYKKVPVLI 58 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~----~l~~~g--i~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~ 58 (225)
+.+|+.++|+.|+...- +....+ -.+....++... ....+.+.-.- ..+|.++
T Consensus 21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i-~~~Pt~~ 80 (104)
T cd02997 21 LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNV-KGFPTFK 80 (104)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCC-ccccEEE
Confidence 45778899999997632 222211 223344444432 13333333222 3689886
No 218
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=40.34 E-value=35 Score=23.12 Aligned_cols=26 Identities=12% Similarity=0.348 Sum_probs=21.0
Q ss_pred ccEEE-eCCeeeeehHHHHHHHHhhcC
Q 027333 54 VPVLI-HNGKPISESLVILEYVDETWK 79 (225)
Q Consensus 54 vP~L~-~~g~~l~es~~I~~yL~~~~~ 79 (225)
+|.+. .+|.++++|..|+++.++.+.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 45555 689999999999999888654
No 219
>PRK09266 hypothetical protein; Provisional
Probab=38.34 E-value=54 Score=25.94 Aligned_cols=57 Identities=12% Similarity=0.064 Sum_probs=38.7
Q ss_pred HHHHcCCCceEEecCCC---CCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhcC
Q 027333 22 ILKLKGVQFDFIDEDLS---NKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVDETWK 79 (225)
Q Consensus 22 ~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~~~~~ 79 (225)
.+...|+++++..+++. ...+.|..-+-. |-+||-..|+..+.+...|.+.|.+.|.
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfltnSl~-gi~pV~~i~~~~~~~~~~~~~~l~~~~~ 259 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFACNAWR-GQRAVSAIDDVALPDSHALLELLRRAYE 259 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhhhcCcc-ceEEEEEECCEECCCCchHHHHHHHHHH
Confidence 45566999999988765 223334443344 7899999888777655677777777663
No 220
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=38.31 E-value=21 Score=24.98 Aligned_cols=52 Identities=15% Similarity=0.115 Sum_probs=26.2
Q ss_pred eEEeccCCChhhHH----HHHHHHHc-CCCceEEecCCC-CCChhhhhhCCCCCcccEEE
Q 027333 5 VKLLKTWSSPFGLR----AFWILKLK-GVQFDFIDEDLS-NKSPLLLQSNPVYKKVPVLI 58 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~----vr~~l~~~-gi~~~~~~v~~~-~~~~~~~~~~p~~g~vP~L~ 58 (225)
+.++.-+|||.|++ +.-+++.. +|++..+..|-. +..+.|+. +-. ..+|+++
T Consensus 45 ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-~g~-~~IP~~I 102 (129)
T PF14595_consen 45 ILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT-NGG-RSIPTFI 102 (129)
T ss_dssp EEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT--SS---SSEEE
T ss_pred EEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-CCC-eecCEEE
Confidence 56778899999985 33444455 677776655321 11233444 433 5799998
No 221
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=38.18 E-value=97 Score=19.06 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=21.2
Q ss_pred cccEEEeCCeeeeehHHHHHHHHhhc
Q 027333 53 KVPVLIHNGKPISESLVILEYVDETW 78 (225)
Q Consensus 53 ~vP~L~~~g~~l~es~~I~~yL~~~~ 78 (225)
.=||+..+| ..+|-.+|.+||.+..
T Consensus 15 ~dPVi~~~G-~tyer~~I~~~l~~~~ 39 (73)
T PF04564_consen 15 RDPVILPSG-HTYERSAIERWLEQNG 39 (73)
T ss_dssp SSEEEETTS-EEEEHHHHHHHHCTTS
T ss_pred hCceeCCcC-CEEcHHHHHHHHHcCC
Confidence 459988788 8899999999999933
No 222
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=38.12 E-value=92 Score=20.16 Aligned_cols=52 Identities=10% Similarity=-0.099 Sum_probs=28.8
Q ss_pred eEEeccCCChhhHHHHHHHHHc----CCCceEEecCCCCCChhhhhhCCCCCcccEEE
Q 027333 5 VKLLKTWSSPFGLRAFWILKLK----GVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLI 58 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~----gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~ 58 (225)
+..|+.++|+.|++..-.+... +-.+....+|... ..++.+..-- ..+|.+.
T Consensus 23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~i-~~~Pt~~ 78 (104)
T cd03004 23 LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK-YESLCQQANI-RAYPTIR 78 (104)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc-hHHHHHHcCC-CcccEEE
Confidence 4567889999998754444322 2124444555543 2344333333 5699887
No 223
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=37.00 E-value=1.1e+02 Score=19.56 Aligned_cols=52 Identities=12% Similarity=0.011 Sum_probs=29.4
Q ss_pred eEEeccCCChhhHHHHHHHHH-----cCCCceEEecCCCCCChhhhhhCCCCCcccEEE
Q 027333 5 VKLLKTWSSPFGLRAFWILKL-----KGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLI 58 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~ 58 (225)
+..|+.++||.|+...-.+.. .+..+....+|... .+.+.+.-.. ..+|++.
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~-~~~~~~~~~i-~~~Pt~~ 76 (101)
T cd02994 20 MIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ-EPGLSGRFFV-TALPTIY 76 (101)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC-CHhHHHHcCC-cccCEEE
Confidence 556788999999865544332 23344445555443 2333333233 4689987
No 224
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=36.64 E-value=1.6e+02 Score=21.03 Aligned_cols=75 Identities=12% Similarity=0.068 Sum_probs=42.9
Q ss_pred CceEEeccCCChhhHHHHHHHHHcCCC--ceEEecCCCCCChhhhhhCCCC--C-cccEEEeCCeeeeehHHHHHHHHhh
Q 027333 3 EEVKLLKTWSSPFGLRAFWILKLKGVQ--FDFIDEDLSNKSPLLLQSNPVY--K-KVPVLIHNGKPISESLVILEYVDET 77 (225)
Q Consensus 3 ~~~~Ly~~~~sp~~~~vr~~l~~~gi~--~~~~~v~~~~~~~~~~~~~p~~--g-~vP~L~~~g~~l~es~~I~~yL~~~ 77 (225)
..+++++...||+|-..--+|....-. +....+..+. ...++...+.. . ..=.++.+|..+.+|.|+++-+...
T Consensus 8 p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~-g~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~i~~~L 86 (137)
T COG3011 8 PDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEP-GQALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIRILRLL 86 (137)
T ss_pred CCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCch-hhhHHhhcCCChhhhheeeEecCCceEeccHHHHHHHHHC
Confidence 356888999999988654444444333 4444332221 22233332220 1 1122335789999999999977765
Q ss_pred c
Q 027333 78 W 78 (225)
Q Consensus 78 ~ 78 (225)
-
T Consensus 87 ~ 87 (137)
T COG3011 87 P 87 (137)
T ss_pred C
Confidence 4
No 225
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=36.60 E-value=51 Score=25.99 Aligned_cols=20 Identities=10% Similarity=0.152 Sum_probs=16.3
Q ss_pred eEEeccCCChhhHHHHHHHH
Q 027333 5 VKLLKTWSSPFGLRAFWILK 24 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~ 24 (225)
+.+|..+.||||++..--+.
T Consensus 121 I~vFtDp~CpyC~kl~~~l~ 140 (251)
T PRK11657 121 VYVFADPNCPYCKQFWQQAR 140 (251)
T ss_pred EEEEECCCChhHHHHHHHHH
Confidence 66789999999999876554
No 226
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=36.09 E-value=54 Score=25.51 Aligned_cols=21 Identities=5% Similarity=0.061 Sum_probs=17.1
Q ss_pred eEEeccCCChhhHHHHHHHHH
Q 027333 5 VKLLKTWSSPFGLRAFWILKL 25 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~ 25 (225)
+.+|..+.||||++..--+..
T Consensus 111 I~vFtDp~CpyCkkl~~~l~~ 131 (232)
T PRK10877 111 ITVFTDITCGYCHKLHEQMKD 131 (232)
T ss_pred EEEEECCCChHHHHHHHHHHH
Confidence 678899999999998765544
No 227
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=35.84 E-value=1.5e+02 Score=20.54 Aligned_cols=59 Identities=10% Similarity=-0.000 Sum_probs=35.6
Q ss_pred EeccCCChhhHHHHH-------HHHHcCCCceEEecCCCCCChhhhh--------hCCCCCcccEEE---eCCeeeeeh
Q 027333 7 LLKTWSSPFGLRAFW-------ILKLKGVQFDFIDEDLSNKSPLLLQ--------SNPVYKKVPVLI---HNGKPISES 67 (225)
Q Consensus 7 Ly~~~~sp~~~~vr~-------~l~~~gi~~~~~~v~~~~~~~~~~~--------~~p~~g~vP~L~---~~g~~l~es 67 (225)
.++..+|++|++..- +....+-.|..+.+|.+..+ +..+ ..-. +-+|+++ .+|..+..+
T Consensus 21 ~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~-~~~~~~~~~~~~~~~~-~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 21 SIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERP-DVDKIYMNAAQAMTGQ-GGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCc-HHHHHHHHHHHHhcCC-CCCCEEEEECCCCCEEeee
Confidence 457789999997632 22233446888888876432 2211 1122 3599987 267887776
No 228
>PTZ00102 disulphide isomerase; Provisional
Probab=35.05 E-value=2.6e+02 Score=24.04 Aligned_cols=73 Identities=15% Similarity=0.079 Sum_probs=42.3
Q ss_pred eEEeccCCChhhHHHHHHH-------HHcCCCceEEecCCCCCChhhhhhCCCCCcccEEE--eCCeee-----eehHHH
Q 027333 5 VKLLKTWSSPFGLRAFWIL-------KLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLI--HNGKPI-----SESLVI 70 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l-------~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~l-----~es~~I 70 (225)
+..|+.+||+.|++..-.+ ...+-++....+|.... ..+.+..-. ..+|++. .+|..+ .....|
T Consensus 53 lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~-~~l~~~~~i-~~~Pt~~~~~~g~~~~y~g~~~~~~l 130 (477)
T PTZ00102 53 LVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE-MELAQEFGV-RGYPTIKFFNKGNPVNYSGGRTADGI 130 (477)
T ss_pred EEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC-HHHHHhcCC-CcccEEEEEECCceEEecCCCCHHHH
Confidence 4677889999999664211 22233455556655432 333333222 4599886 344321 346788
Q ss_pred HHHHHhhcC
Q 027333 71 LEYVDETWK 79 (225)
Q Consensus 71 ~~yL~~~~~ 79 (225)
..|+.+...
T Consensus 131 ~~~l~~~~~ 139 (477)
T PTZ00102 131 VSWIKKLTG 139 (477)
T ss_pred HHHHHHhhC
Confidence 999988754
No 229
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=34.90 E-value=49 Score=20.64 Aligned_cols=22 Identities=9% Similarity=-0.211 Sum_probs=16.7
Q ss_pred eEEeccCCChhhHHHHHHHHHc
Q 027333 5 VKLLKTWSSPFGLRAFWILKLK 26 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~ 26 (225)
+.+|..+.||+|....-.+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 4678899999999776666553
No 230
>cd05142 Barstar Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it thus inhibiting its potentially lethal RNase activity inside the cell. Barstar also binds and inhibits a ribonuclease called RNase Sa (produced by Streptomyces aureofaciens) which belongs to the same enzyme family as does barnase.
Probab=33.47 E-value=83 Score=20.32 Aligned_cols=32 Identities=9% Similarity=0.125 Sum_probs=25.5
Q ss_pred EEeCCeeeeehHHHHHHHHhhcCCCCCCCCCH
Q 027333 57 LIHNGKPISESLVILEYVDETWKQNPLLPEDP 88 (225)
Q Consensus 57 L~~~g~~l~es~~I~~yL~~~~~~~~l~p~~~ 88 (225)
++.||..+.+-....+.+.+.+.-+..++.+-
T Consensus 2 i~iDg~~i~~~~~f~~~l~~~~~~p~~~G~Nl 33 (87)
T cd05142 2 VVIDGEEIRSIEDLHQILKKELALPEYYGENL 33 (87)
T ss_pred EEEECccCCCHHHHHHHHHHHhCCchhcCCCH
Confidence 34577888889999999999998777777764
No 231
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=33.25 E-value=61 Score=23.82 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=21.5
Q ss_pred eEEeccCCChhhHH----HHHHHHHcCCCceEEecC
Q 027333 5 VKLLKTWSSPFGLR----AFWILKLKGVQFDFIDED 36 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~----vr~~l~~~gi~~~~~~v~ 36 (225)
+.+|+...||||.. ++-+....++.++.+.+.
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~~ 36 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPIL 36 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeeee
Confidence 46889999999884 344444556666666553
No 232
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=33.19 E-value=92 Score=20.85 Aligned_cols=30 Identities=17% Similarity=0.155 Sum_probs=24.7
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEe
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFID 34 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~ 34 (225)
..|......|...-++.+++.+|||++...
T Consensus 58 ~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~ 87 (100)
T PF15608_consen 58 KVLVRDPDDPDLAHLLLLAEEKGVPVEVYP 87 (100)
T ss_pred EEEECCCCCccHHHHHHHHHHcCCcEEEeC
Confidence 356666778999999999999999998875
No 233
>PF12290 DUF3802: Protein of unknown function (DUF3802); InterPro: IPR020979 This family of proteins is found in bacteria and are typically between 114 and 143 amino acids in length. There is a conserved KNLFD sequence motif. The annotation with this family suggests that it may be the B subunit of bacterial type IIA DNA topoisomerase but there is no evidence to support this annotation.
Probab=32.73 E-value=47 Score=22.63 Aligned_cols=85 Identities=15% Similarity=0.104 Sum_probs=49.5
Q ss_pred HHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHccchhhHHHHHHHhcCc----hhHHHHHHHHHHHHHHHHHhcCCCcc
Q 027333 68 LVILEYVDETWKQNPLLPEDPYERARARFWAKFGDDKVLASIWNAFIKQG----KEQEEAIGLAIETLKFLEEELKGKRF 143 (225)
Q Consensus 68 ~~I~~yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~l~~le~~L~~~~f 143 (225)
.+.++||.+..+ ++-..........-..+.+++.+...+..++...+ +.+-...++.......|++.|++
T Consensus 9 ~~LI~yLte~L~---lFe~~~~~~~~~~Tv~d~vee~ia~~im~vc~Qnp~L~~~~R~~iirE~Daiv~DLeEVLa~--- 82 (113)
T PF12290_consen 9 DALIEYLTENLS---LFESSQSGDTGDETVEDVVEEQIASQIMAVCEQNPELEFSQRFQIIREADAIVYDLEEVLAS--- 82 (113)
T ss_pred HHHHHHHHHhHH---HhcCCCCCCcccchHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 578889988765 33211111122223344556666666666665433 23455677788888999998864
Q ss_pred cccCCCChhhhhHHH
Q 027333 144 FGGEKIGLPDLALGW 158 (225)
Q Consensus 144 l~G~~~t~aD~~l~~ 158 (225)
..+.++|-.-+.+..
T Consensus 83 V~~~~aT~eQ~~Fi~ 97 (113)
T PF12290_consen 83 VWNQKATNEQIAFIE 97 (113)
T ss_pred HHcCCCCHHHHHHHH
Confidence 234567777665544
No 234
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=32.63 E-value=1.3e+02 Score=19.08 Aligned_cols=56 Identities=14% Similarity=0.075 Sum_probs=30.1
Q ss_pred eEEeccCCChhhHHHHHHH-----HHcC--CCceEEecCCCCCChhhhhhCCCCCcccEEE--eCCe
Q 027333 5 VKLLKTWSSPFGLRAFWIL-----KLKG--VQFDFIDEDLSNKSPLLLQSNPVYKKVPVLI--HNGK 62 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l-----~~~g--i~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~ 62 (225)
+..|+.++|+.|+...-.+ ...+ -.+....+|..... .+.+...- ..+|++. .+|.
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~v-~~~Pt~~~~~~g~ 84 (102)
T cd03005 20 FVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR-ELCSEFQV-RGYPTLLLFKDGE 84 (102)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh-hhHhhcCC-CcCCEEEEEeCCC
Confidence 4567788999999654322 3333 23555556554322 33222222 4699876 3553
No 235
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=32.54 E-value=76 Score=23.35 Aligned_cols=32 Identities=6% Similarity=-0.085 Sum_probs=21.3
Q ss_pred ceEEeccCCChhhH----HHHHHHHHc--CCCceEEec
Q 027333 4 EVKLLKTWSSPFGL----RAFWILKLK--GVQFDFIDE 35 (225)
Q Consensus 4 ~~~Ly~~~~sp~~~----~vr~~l~~~--gi~~~~~~v 35 (225)
++.+|..+.||||. +++-+.+.. +++++.+..
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~~ 39 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHLG 39 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEec
Confidence 38899999999998 444444444 555555543
No 236
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=32.45 E-value=68 Score=22.28 Aligned_cols=50 Identities=12% Similarity=0.182 Sum_probs=25.1
Q ss_pred cCCChhhHHHHHHHHH-----cCCCceEEecCCCC--CChhhhhhCCCCCcccEEEeCC
Q 027333 10 TWSSPFGLRAFWILKL-----KGVQFDFIDEDLSN--KSPLLLQSNPVYKKVPVLIHNG 61 (225)
Q Consensus 10 ~~~sp~~~~vr~~l~~-----~gi~~~~~~v~~~~--~~~~~~~~~p~~g~vP~L~~~g 61 (225)
..+||.|+.-.-.|.. .+-.++.+-|..+. ....|.+.... ..|++.|.+
T Consensus 33 ~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~--~~p~~~D~~ 89 (149)
T cd02970 33 GFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFL--PFPVYADPD 89 (149)
T ss_pred CCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCC--CCeEEECCc
Confidence 5699999863333222 12234444444332 12234554443 578877654
No 237
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=32.10 E-value=2.7e+02 Score=23.65 Aligned_cols=73 Identities=18% Similarity=0.100 Sum_probs=42.2
Q ss_pred eEEeccCCChhhHHHHHHHH-----Hc--CCCceEEecCCCCCChhhhhhCCCCCcccEEE--eCCee-------eeehH
Q 027333 5 VKLLKTWSSPFGLRAFWILK-----LK--GVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLI--HNGKP-------ISESL 68 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~-----~~--gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~-------l~es~ 68 (225)
+.+|+.+||+.|++..-.+. +. +-.+....++.... .++.+.-.. ..+|++. .+|.. -.+..
T Consensus 22 ~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-~~l~~~~~i-~~~Pt~~~~~~g~~~~~~~~g~~~~~ 99 (462)
T TIGR01130 22 LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE-KDLAQKYGV-SGYPTLKIFRNGEDSVSDYNGPRDAD 99 (462)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc-HHHHHhCCC-ccccEEEEEeCCccceeEecCCCCHH
Confidence 56778899999997643222 22 32355556655442 334333333 4589886 34432 12467
Q ss_pred HHHHHHHhhcC
Q 027333 69 VILEYVDETWK 79 (225)
Q Consensus 69 ~I~~yL~~~~~ 79 (225)
.|..++.+..+
T Consensus 100 ~l~~~i~~~~~ 110 (462)
T TIGR01130 100 GIVKYMKKQSG 110 (462)
T ss_pred HHHHHHHHhcC
Confidence 78888887654
No 238
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=32.08 E-value=82 Score=16.88 Aligned_cols=24 Identities=13% Similarity=0.092 Sum_probs=19.8
Q ss_pred CcccEEEeCCeeeeehHHHHHHHH
Q 027333 52 KKVPVLIHNGKPISESLVILEYVD 75 (225)
Q Consensus 52 g~vP~L~~~g~~l~es~~I~~yL~ 75 (225)
|.+|....++..+.....|.+|+.
T Consensus 25 g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 25 GELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred CCCCeEEeCCeEEEeHHHHHHHHh
Confidence 678887777888888888888875
No 239
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=31.41 E-value=1.3e+02 Score=19.67 Aligned_cols=56 Identities=14% Similarity=0.080 Sum_probs=31.2
Q ss_pred eEEeccCCChhhHHHHHHHHHc-----C-C----CceEEecCCCCCChhhhhhCCCCCcccEEE--eCCe
Q 027333 5 VKLLKTWSSPFGLRAFWILKLK-----G-V----QFDFIDEDLSNKSPLLLQSNPVYKKVPVLI--HNGK 62 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~-----g-i----~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~ 62 (225)
+..|+.++|+.|+...-.+... + . .+....+|.+.. .++.+..-. ..+|++. .+|.
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~-~~l~~~~~v-~~~Ptl~~~~~g~ 89 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE-SDIADRYRI-NKYPTLKLFRNGM 89 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-HHHHHhCCC-CcCCEEEEEeCCc
Confidence 4567889999999776555321 1 1 234444554432 344433333 4699987 3554
No 240
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=31.23 E-value=50 Score=19.74 Aligned_cols=21 Identities=29% Similarity=0.232 Sum_probs=15.2
Q ss_pred ceEEecc----CCChhhHHHHHHHH
Q 027333 4 EVKLLKT----WSSPFGLRAFWILK 24 (225)
Q Consensus 4 ~~~Ly~~----~~sp~~~~vr~~l~ 24 (225)
+|+||.+ ..|.||+||-.+|.
T Consensus 2 ~mKLYRfiTGpDDssFChrvta~LN 26 (70)
T COG5515 2 KMKLYRFITGPDDSSFCHRVTAALN 26 (70)
T ss_pred cceeeEeecCCchHHHHHHHHHHHh
Confidence 3778744 45679999987764
No 241
>PRK15371 effector protein YopJ; Provisional
Probab=30.34 E-value=1.8e+02 Score=23.61 Aligned_cols=41 Identities=10% Similarity=0.008 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCcccccCCCChhhhhHHHHHHHH
Q 027333 122 EAIGLAIETLKFLEEELKGKRFFGGEKIGLPDLALGWLANLI 163 (225)
Q Consensus 122 ~~~~~l~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~ 163 (225)
...+++..+++.||..++.+.|+ -+.++..|+-..+.+...
T Consensus 23 ~~~~~L~~~i~~le~~~~~G~~~-~~~~~~~Di~~lp~lv~~ 63 (287)
T PRK15371 23 ISNEELKNIITQLEDDIADGSWI-HKNYARTDLEVMPALVAQ 63 (287)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCC-CchhHHhhHHhhHHHHHH
Confidence 45678999999999999988888 445899999998876655
No 242
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=30.03 E-value=60 Score=24.12 Aligned_cols=32 Identities=13% Similarity=0.145 Sum_probs=20.5
Q ss_pred eEEeccCCChhhH----HHHHHHHHc----CCCceEEecC
Q 027333 5 VKLLKTWSSPFGL----RAFWILKLK----GVQFDFIDED 36 (225)
Q Consensus 5 ~~Ly~~~~sp~~~----~vr~~l~~~----gi~~~~~~v~ 36 (225)
+.+|+...||||. +++-++... ++.++.+.+.
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~ 40 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFE 40 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeee
Confidence 4689999999998 444444444 4555555543
No 243
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=30.03 E-value=52 Score=19.68 Aligned_cols=32 Identities=16% Similarity=0.017 Sum_probs=19.7
Q ss_pred EEeccCCChhhHHHHHHHHHcCCCceEEecCC
Q 027333 6 KLLKTWSSPFGLRAFWILKLKGVQFDFIDEDL 37 (225)
Q Consensus 6 ~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~ 37 (225)
+||......-+..++-+|+..||++....-..
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~ 33 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFVKNEHM 33 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE--S---
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEECCcc
Confidence 57777666678999999999999998886543
No 244
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=28.51 E-value=1.7e+02 Score=18.97 Aligned_cols=52 Identities=12% Similarity=-0.030 Sum_probs=27.7
Q ss_pred eEEeccCCChhhHHHHHHH-----HHc--CCCceEEecCCCCCChhhhhhCCCCCcccEEE
Q 027333 5 VKLLKTWSSPFGLRAFWIL-----KLK--GVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLI 58 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l-----~~~--gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~ 58 (225)
+..|+.++||.|++..-.+ .+. |..+....++.... +.+.+..-- ..+|++.
T Consensus 19 lv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~I-~~~Pt~~ 77 (104)
T cd03000 19 LVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY-SSIASEFGV-RGYPTIK 77 (104)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC-HhHHhhcCC-ccccEEE
Confidence 4456778999999654333 221 33444444544332 233322222 4699986
No 245
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=28.11 E-value=1.1e+02 Score=20.79 Aligned_cols=51 Identities=10% Similarity=-0.132 Sum_probs=29.3
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCC----ceEEecCCCCCChhhh--hhCCCCCcccEEE
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQ----FDFIDEDLSNKSPLLL--QSNPVYKKVPVLI 58 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~----~~~~~v~~~~~~~~~~--~~~p~~g~vP~L~ 58 (225)
+..|+.+||+.|+...-.+....-. .....||.+. ...+. +.+- ..+|++.
T Consensus 33 lV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~-~~~l~~~~~~I--~~~PTl~ 89 (113)
T cd03006 33 LVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWW-PQGKCRKQKHF--FYFPVIH 89 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC-ChHHHHHhcCC--cccCEEE
Confidence 3567889999999776655544322 3344555443 22333 2233 4689887
No 246
>PF13728 TraF: F plasmid transfer operon protein
Probab=27.84 E-value=99 Score=23.78 Aligned_cols=52 Identities=12% Similarity=0.001 Sum_probs=34.5
Q ss_pred eEEeccCCChhhH----HHHHHHHHcCCCceEEecCCC---------CCChhhhhhCCCCCcccEEE
Q 027333 5 VKLLKTWSSPFGL----RAFWILKLKGVQFDFIDEDLS---------NKSPLLLQSNPVYKKVPVLI 58 (225)
Q Consensus 5 ~~Ly~~~~sp~~~----~vr~~l~~~gi~~~~~~v~~~---------~~~~~~~~~~p~~g~vP~L~ 58 (225)
+.+++...||+|+ .++.+....|+.+..+.+|-. .........+. ..+|+|.
T Consensus 124 L~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v--~~~Pal~ 188 (215)
T PF13728_consen 124 LFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGV--KVTPALF 188 (215)
T ss_pred EEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCC--CcCCEEE
Confidence 5567778999998 477777788998888877622 11122233444 4689886
No 247
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=27.77 E-value=3.9e+02 Score=22.87 Aligned_cols=118 Identities=13% Similarity=0.024 Sum_probs=57.0
Q ss_pred hHHHHHHHHHcCCCceEEecC---CC--------------CCChhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhc
Q 027333 16 GLRAFWILKLKGVQFDFIDED---LS--------------NKSPLLLQSNPVYKKVPVLIHNGKPISESLVILEYVDETW 78 (225)
Q Consensus 16 ~~~vr~~l~~~gi~~~~~~v~---~~--------------~~~~~~~~~~p~~g~vP~L~~~g~~l~es~~I~~yL~~~~ 78 (225)
..-++-+|+..|++...+.-. ++ ..-+++.+... ..+=++... .......++|.++|
T Consensus 171 ~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg~~~e~i~~~~~--A~lniv~~~----~~~~~~a~~L~e~~ 244 (428)
T cd01965 171 VREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGGTTLEEIRDAGN--AKATIALGE----YSGRKAAKALEEKF 244 (428)
T ss_pred HHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCCCCcHHHHHHhcc--CcEEEEECh----hhhHHHHHHHHHHH
Confidence 788999999999998876531 00 00122222211 112111111 13457899999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHccchhhHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhcCCCccccc
Q 027333 79 KQNPLLPEDPYERARARFWAKFGDDKVLASIWNAFIKQGKEQEEAIGLAIETLKFLEEELKGKRFFGG 146 (225)
Q Consensus 79 ~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~fl~G 146 (225)
+-+-+....+..-...+.|+..+...+... .++..++.+.++.+.+...-..|+++++...
T Consensus 245 GiP~~~~~~p~G~~~t~~~l~~l~~~~g~~-------~~~~~~~~r~~~~~~~~~~~~~l~gk~v~i~ 305 (428)
T cd01965 245 GVPYILFPTPIGLKATDEFLRALSKLSGKP-------IPEELERERGRLLDAMLDSHFYLGGKRVAIA 305 (428)
T ss_pred CCCeeecCCCcChHHHHHHHHHHHHHHCCC-------CCHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 765433222444455555555444332211 1222333333343333333355677666654
No 248
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=27.76 E-value=68 Score=20.45 Aligned_cols=52 Identities=13% Similarity=-0.042 Sum_probs=28.3
Q ss_pred eEEeccCCChhhHHHHHHH-----HHcCC-CceEEecCCCCCChhhhhhCCCCCcccEEE
Q 027333 5 VKLLKTWSSPFGLRAFWIL-----KLKGV-QFDFIDEDLSNKSPLLLQSNPVYKKVPVLI 58 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l-----~~~gi-~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~ 58 (225)
+.+|+.++|+.|+...-.+ ...+- .+....++... ...+.+.-.. ..+|.+.
T Consensus 17 ~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~i-~~~P~~~ 74 (102)
T TIGR01126 17 LVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA-EKDLASRFGV-SGFPTIK 74 (102)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc-hHHHHHhCCC-CcCCEEE
Confidence 5678889999998754333 22321 13344444332 3344333333 4699885
No 249
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=27.55 E-value=44 Score=22.91 Aligned_cols=65 Identities=15% Similarity=0.134 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHcCCCceEEecCCCCC-ChhhhhhCCCCCcccEEEe---CCeeeeehHHHHHHHHhhcC
Q 027333 15 FGLRAFWILKLKGVQFDFIDEDLSNK-SPLLLQSNPVYKKVPVLIH---NGKPISESLVILEYVDETWK 79 (225)
Q Consensus 15 ~~~~vr~~l~~~gi~~~~~~v~~~~~-~~~~~~~~p~~g~vP~L~~---~g~~l~es~~I~~yL~~~~~ 79 (225)
|..-.+=+....|++.+...++-.+. ..+-....|+.|..|.++| --...-|...|+.|+.+...
T Consensus 24 fP~LakEl~e~~g~~I~~~r~~~~~~l~~e~~~~~~~sGy~PtViD~lrRC~T~EEALEVInylek~GE 92 (128)
T PF09868_consen 24 FPALAKELEEEEGISIEGYRLDEEQVLEEEEEEPDDFSGYNPTVIDYLRRCKTDEEALEVINYLEKRGE 92 (128)
T ss_pred hHHHHHHHhccCCCceeeeechhhhhhhhccccCCCccCCCChHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 34455666777888887665542210 0111113343477888775 34566777888888888644
No 250
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=27.24 E-value=3e+02 Score=21.37 Aligned_cols=72 Identities=17% Similarity=0.129 Sum_probs=40.1
Q ss_pred eEEeccCCChhhHHHHHHHHH-----cCCCceEEecCCCCCChhhhhhCCCCCcccEEE--eCCeee------eehHHHH
Q 027333 5 VKLLKTWSSPFGLRAFWILKL-----KGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLI--HNGKPI------SESLVIL 71 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~l------~es~~I~ 71 (225)
+..|+.+||+.|+...-.+.. .| .+....+|... .+.+.+.--- ..+|++. ++|..+ .....|.
T Consensus 56 lV~FyApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~-~~~l~~~~~I-~~~PTl~~f~~G~~v~~~~G~~s~e~L~ 132 (224)
T PTZ00443 56 FVKFYAPWCSHCRKMAPAWERLAKALKG-QVNVADLDATR-ALNLAKRFAI-KGYPTLLLFDKGKMYQYEGGDRSTEKLA 132 (224)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCcc-cHHHHHHcCC-CcCCEEEEEECCEEEEeeCCCCCHHHHH
Confidence 456788999999865444332 22 24444555443 2344433333 4699887 466443 2345666
Q ss_pred HHHHhhcC
Q 027333 72 EYVDETWK 79 (225)
Q Consensus 72 ~yL~~~~~ 79 (225)
+|+.+.+.
T Consensus 133 ~fi~~~~~ 140 (224)
T PTZ00443 133 AFALGDFK 140 (224)
T ss_pred HHHHHHHH
Confidence 66666654
No 251
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=26.64 E-value=1.5e+02 Score=20.25 Aligned_cols=61 Identities=20% Similarity=0.108 Sum_probs=35.5
Q ss_pred eEEeccCC--ChhhHHHHHHHHHcCCCc----eEEecCCCCCChhhhhhCCCCCcccEEE--eCCeeeeeh
Q 027333 5 VKLLKTWS--SPFGLRAFWILKLKGVQF----DFIDEDLSNKSPLLLQSNPVYKKVPVLI--HNGKPISES 67 (225)
Q Consensus 5 ~~Ly~~~~--sp~~~~vr~~l~~~gi~~----~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~l~es 67 (225)
+.+|+..+ ||-|+.+.-.+...--.| ....++.++. +++....-- ..+|+++ .+|..+...
T Consensus 31 v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~-~~la~~f~V-~sIPTli~fkdGk~v~~~ 99 (111)
T cd02965 31 VLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADE-QALAARFGV-LRTPALLFFRDGRYVGVL 99 (111)
T ss_pred EEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCC-HHHHHHcCC-CcCCEEEEEECCEEEEEE
Confidence 44566664 999998776665543333 3334555443 344443333 4699998 478766543
No 252
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=25.82 E-value=1.9e+02 Score=18.68 Aligned_cols=53 Identities=11% Similarity=-0.122 Sum_probs=28.5
Q ss_pred eEEeccCCChhhHHHHHHHHHc----CCCceEEecCCCC-CChhhhhhCCCCCcccEEE
Q 027333 5 VKLLKTWSSPFGLRAFWILKLK----GVQFDFIDEDLSN-KSPLLLQSNPVYKKVPVLI 58 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~----gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~ 58 (225)
+..|+.++|+.|+...-.+... +-.+....++.+. ....+.+.... ..+|.+.
T Consensus 22 lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i-~~~Pt~~ 79 (109)
T cd03002 22 LVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGV-QGFPTLK 79 (109)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCC-CcCCEEE
Confidence 5577889999998654333222 2123444444442 12334433333 4699887
No 253
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=25.16 E-value=1.5e+02 Score=18.09 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=25.8
Q ss_pred eEEeccCCChhhHHHHHHHHHcCCCceEEecC
Q 027333 5 VKLLKTWSSPFGLRAFWILKLKGVQFDFIDED 36 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~ 36 (225)
.-+..++....+.+..-+|...|++++.++++
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~liP~P 34 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVRLIPTP 34 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEEEeCCC
Confidence 34455666678999999999999999999874
No 254
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=23.80 E-value=73 Score=23.93 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=18.1
Q ss_pred CCeeeeehHHHHHHHHhhcC
Q 027333 60 NGKPISESLVILEYVDETWK 79 (225)
Q Consensus 60 ~g~~l~es~~I~~yL~~~~~ 79 (225)
.+..|+||..|-+|+.++|+
T Consensus 154 ad~lIaDs~~I~~y~~~~y~ 173 (185)
T PF09314_consen 154 ADRLIADSKGIQDYIKERYG 173 (185)
T ss_pred CCEEEEcCHHHHHHHHHHcC
Confidence 45789999999999999998
No 255
>PF12728 HTH_17: Helix-turn-helix domain
Probab=23.29 E-value=1.5e+02 Score=16.42 Aligned_cols=26 Identities=12% Similarity=0.063 Sum_probs=21.8
Q ss_pred CcccEEEeCCeeeeehHHHHHHHHhh
Q 027333 52 KKVPVLIHNGKPISESLVILEYVDET 77 (225)
Q Consensus 52 g~vP~L~~~g~~l~es~~I~~yL~~~ 77 (225)
|.+|....++.....-..|.+|+.+.
T Consensus 25 g~i~~~~~g~~~~~~~~~l~~~~~~~ 50 (51)
T PF12728_consen 25 GKIPPFKIGRKWRIPKSDLDRWLERR 50 (51)
T ss_pred CCCCeEEeCCEEEEeHHHHHHHHHhC
Confidence 68988887888899999999998763
No 256
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=22.71 E-value=2.3e+02 Score=21.90 Aligned_cols=60 Identities=22% Similarity=0.169 Sum_probs=39.4
Q ss_pred ceEEeccCCChhhHHHHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEEeCCeeee
Q 027333 4 EVKLLKTWSSPFGLRAFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLIHNGKPIS 65 (225)
Q Consensus 4 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~ 65 (225)
.+++|.+..|--|-...-.|+.+|+-=.+..++.......+.+ |-- -.+|.+..||..+.
T Consensus 12 ~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f~~~~-~~V-~SvP~Vf~DGel~~ 71 (265)
T COG5494 12 EVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPPFLAFE-KGV-ISVPSVFIDGELVY 71 (265)
T ss_pred EEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCChHHHhh-cce-eecceEEEcCeEEE
Confidence 3789999999888888889999888655555544332222222 222 26899987776544
No 257
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=22.40 E-value=3.5e+02 Score=23.90 Aligned_cols=73 Identities=18% Similarity=0.119 Sum_probs=46.2
Q ss_pred eEEeccCCChhhHH-------HHHHHHHcCCCceEEecCCCCCChhhhhhCCCCCcccEEE--eCCee------eeehHH
Q 027333 5 VKLLKTWSSPFGLR-------AFWILKLKGVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLI--HNGKP------ISESLV 69 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~-------vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~------l~es~~ 69 (225)
+.-||-|||..|.+ .--.|...|=+.....||-... ..+...--. .-.|+|. .+|.. ..+...
T Consensus 46 lVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~-~~~~~~y~v-~gyPTlkiFrnG~~~~~Y~G~r~adg 123 (493)
T KOG0190|consen 46 LVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE-SDLASKYEV-RGYPTLKIFRNGRSAQDYNGPREADG 123 (493)
T ss_pred EEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-hhhHhhhcC-CCCCeEEEEecCCcceeccCcccHHH
Confidence 45678888887764 3344455555788888876533 233332222 3489886 35543 456899
Q ss_pred HHHHHHhhcC
Q 027333 70 ILEYVDETWK 79 (225)
Q Consensus 70 I~~yL~~~~~ 79 (225)
|+.||-++.+
T Consensus 124 Iv~wl~kq~g 133 (493)
T KOG0190|consen 124 IVKWLKKQSG 133 (493)
T ss_pred HHHHHHhccC
Confidence 9999988764
No 258
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=22.39 E-value=1.3e+02 Score=23.49 Aligned_cols=54 Identities=17% Similarity=0.229 Sum_probs=34.3
Q ss_pred HHHHcCCCceEEecCCC---CCChhhhhhCCCCCcccEEEeCCeee--eehHHHHHHHHh
Q 027333 22 ILKLKGVQFDFIDEDLS---NKSPLLLQSNPVYKKVPVLIHNGKPI--SESLVILEYVDE 76 (225)
Q Consensus 22 ~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l--~es~~I~~yL~~ 76 (225)
.+...|++++...+.+. ...+-|..-+.. |-+|+-..++..+ .....|.+.|-+
T Consensus 196 ~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~-gv~pV~~i~~~~~~~~~~~~~~~~l~~ 254 (256)
T cd00449 196 LAKELGIKVEERPISLDELYAADEVFLTGTAA-EVTPVTEIDGRGIGDGKPGPVTRKLRE 254 (256)
T ss_pred HHHHcCCeEEEEecCHHHHhhCCEEEEccccc-eEEEEEEECCeecCCCCCCHHHHHHHH
Confidence 56677999999988764 323334444444 7889998777665 334556665544
No 259
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=21.89 E-value=2.1e+02 Score=17.69 Aligned_cols=52 Identities=8% Similarity=-0.158 Sum_probs=30.6
Q ss_pred eEEeccCCChhhHHHHHHHHH----c--CCCceEEecCCCCCChhhhhhCCCCCcccEEE
Q 027333 5 VKLLKTWSSPFGLRAFWILKL----K--GVQFDFIDEDLSNKSPLLLQSNPVYKKVPVLI 58 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l~~----~--gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~ 58 (225)
+.+|+.++|++|+...-.+.. . +-.+....++... ...+.+.-.. ..+|++.
T Consensus 19 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~i-~~~Pt~~ 76 (101)
T cd02961 19 LVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA-NNDLCSEYGV-RGYPTIK 76 (101)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc-hHHHHHhCCC-CCCCEEE
Confidence 567788899999976655533 2 2345555555443 2344433333 4689886
No 260
>PLN02309 5'-adenylylsulfate reductase
Probab=21.82 E-value=2.8e+02 Score=24.21 Aligned_cols=53 Identities=13% Similarity=0.094 Sum_probs=30.2
Q ss_pred eEEeccCCChhhHHHHHHH-----HHcCCCceEEecCCCCCChhhhh-hCCCCCcccEEE
Q 027333 5 VKLLKTWSSPFGLRAFWIL-----KLKGVQFDFIDEDLSNKSPLLLQ-SNPVYKKVPVLI 58 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~vr~~l-----~~~gi~~~~~~v~~~~~~~~~~~-~~p~~g~vP~L~ 58 (225)
+..|+.++|+.|+...-.+ .+.+-.+....++.+.....+.. ..-. ..+|++.
T Consensus 369 lV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I-~~~PTil 427 (457)
T PLN02309 369 LVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQL-GSFPTIL 427 (457)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCC-ceeeEEE
Confidence 5678899999998655333 22343455555655522233332 1222 4699987
No 261
>COG5460 Uncharacterized conserved protein [Function unknown]
Probab=21.27 E-value=2.3e+02 Score=17.91 Aligned_cols=36 Identities=14% Similarity=0.234 Sum_probs=21.6
Q ss_pred HHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHccchhhHHHH
Q 027333 68 LVILEYVDETWKQNPLLPEDPYERARARFWAKFGDDKVLASIW 110 (225)
Q Consensus 68 ~~I~~yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~ 110 (225)
.-|-+||.+... .....-.+..+++|+.+.+.+.+.
T Consensus 16 ~~i~dYL~~E~~-------~evg~~~Ae~fleFis~elGpyfY 51 (82)
T COG5460 16 TRIRDYLTRETE-------TEVGKFDAEFFLEFISGELGPYFY 51 (82)
T ss_pred HHHHHHHHHHHH-------HHHHHhhHHHHHHHHHhhhhHHHH
Confidence 346778877643 223445556677777777665533
No 262
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=21.21 E-value=94 Score=22.27 Aligned_cols=48 Identities=19% Similarity=0.124 Sum_probs=31.7
Q ss_pred HHHccchhhHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhcCCCcccc
Q 027333 98 AKFGDDKVLASIWNAFIKQGKEQEEAIGLAIETLKFLEEELKGKRFFG 145 (225)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~fl~ 145 (225)
-.++++.+.|.+.--+...........+.+....+.+|++++|+-++.
T Consensus 8 k~YiDTaliPL~~i~~~~~~k~~a~~~E~~~~l~~~lErqfKGRv~l~ 55 (142)
T PF10673_consen 8 KEYIDTALIPLIPIDFGEDMKEAASQGEFLRLLADELERQFKGRVLLF 55 (142)
T ss_pred hcccceeeeeccccCccccHHHHHHHHHHHHHHHHHHHHhcCceEEec
Confidence 346677776665554544444555667777888889999998764443
No 263
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=21.17 E-value=92 Score=21.61 Aligned_cols=20 Identities=5% Similarity=-0.044 Sum_probs=15.4
Q ss_pred ceEEeccCCChhhHHHHHHH
Q 027333 4 EVKLLKTWSSPFGLRAFWIL 23 (225)
Q Consensus 4 ~~~Ly~~~~sp~~~~vr~~l 23 (225)
.++.|..+.||+|++..-.+
T Consensus 8 ~i~~f~D~~Cp~C~~~~~~l 27 (154)
T cd03023 8 TIVEFFDYNCGYCKKLAPEL 27 (154)
T ss_pred EEEEEECCCChhHHHhhHHH
Confidence 46788899999999775443
No 264
>PF07181 VirC2: VirC2 protein; InterPro: IPR009841 This family consists of several VirC2 proteins which seem to be found exclusively in Agrobacterium species and Rhizobium etli. VirC2 is known to be involved in virulence in Agrobacterium species but its exact function is unclear [, ].; PDB: 2RH3_A.
Probab=20.43 E-value=2.3e+02 Score=21.15 Aligned_cols=29 Identities=14% Similarity=0.053 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCccccc
Q 027333 118 KEQEEAIGLAIETLKFLEEELKGKRFFGG 146 (225)
Q Consensus 118 ~~~~~~~~~l~~~l~~le~~L~~~~fl~G 146 (225)
...+.+.=.+++.|+.+|.+|.+|.|=..
T Consensus 107 s~sksLqmILrrAL~dfE~mL~dGsF~~~ 135 (202)
T PF07181_consen 107 SPSKSLQMILRRALDDFEAMLADGSFSKA 135 (202)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTSGGGGS
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCccccc
Confidence 34566677788999999999988887654
No 265
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=20.25 E-value=1.9e+02 Score=21.72 Aligned_cols=30 Identities=13% Similarity=0.020 Sum_probs=18.2
Q ss_pred eEEeccCCChhhHHH----HHHHHHcCCCceEEe
Q 027333 5 VKLLKTWSSPFGLRA----FWILKLKGVQFDFID 34 (225)
Q Consensus 5 ~~Ly~~~~sp~~~~v----r~~l~~~gi~~~~~~ 34 (225)
+..|+..+||+|++- .-+.+..|+.+--+.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs 106 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYT 106 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEE
Confidence 456777899999975 333444464443333
No 266
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=20.06 E-value=1.1e+02 Score=24.53 Aligned_cols=54 Identities=7% Similarity=0.003 Sum_probs=33.7
Q ss_pred HHHHcCCCceEEecCCC---CCChhhhhhCCCCCcccEEEeCCeee----eehHHHHHHHHh
Q 027333 22 ILKLKGVQFDFIDEDLS---NKSPLLLQSNPVYKKVPVLIHNGKPI----SESLVILEYVDE 76 (225)
Q Consensus 22 ~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l----~es~~I~~yL~~ 76 (225)
+++..|++++...+.+. ...+-|..-+.. |-+||-..++..+ .....|.+.|.+
T Consensus 211 ~~~~~Gi~v~e~~i~~~~l~~ade~f~~ns~~-gi~pV~~i~~~~~~~~~~~~gp~~~~l~~ 271 (279)
T cd01557 211 LARDLGIKVEERPITRDELYEADEVFATGTAA-VVTPVGEIDYRGKEPGEGEVGPVTKKLYD 271 (279)
T ss_pred HHHHcCCeEEEEeCCHHHHhhCCEEEEeccee-EEEEEEEEccccccCCCCCCCHHHHHHHH
Confidence 56777999999988764 223334444444 7889998776554 333455554444
Done!